16-4731501-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731501
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731501
    reference: chr 16
allele count: 3
allele frequency: 2.803319129849742e-5
allele num: 107016
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1066-50G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.153G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1132-50G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1249-50G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1132-50G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.250-50G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1066-50G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1069-50G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.104-50G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.956-50G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000591673
  gene symbol: MGRN1
  hgvsc: ENST00000591673.1:n.538-50G>A
  variant of: http://identifiers.org/hgnc/20254
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11682
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5378
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16587
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12765
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9192
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2737
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

16-4731509-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731509
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731509
    reference: chr 16
allele count: 1
allele frequency: 9.291607819817142e-6
allele num: 107624
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1132-42G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1066-42G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.250-42G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000591673
  gene symbol: MGRN1
  hgvsc: ENST00000591673.1:n.538-42G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.161G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1066-42G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1249-42G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1069-42G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1132-42G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.104-42G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.956-42G>A
  variant of: http://identifiers.org/hgnc/20254
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5311
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6444
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22567
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2902
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12600
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8650
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5501
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD

16-4731512-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731512
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731512
    reference: chr 16
allele count: 2
allele frequency: 1.854736998293642e-5
allele num: 107832
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1066-39C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1069-39C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1132-39C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000591673
  gene symbol: MGRN1
  hgvsc: ENST00000591673.1:n.538-39C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.104-39C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1132-39C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.250-39C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.164C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1249-39C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1066-39C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.956-39C>T
  variant of: http://identifiers.org/hgnc/20254
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5301
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7957
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2959
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24718
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4583
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13032
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

16-4731518-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731518
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731518
    reference: chr 16
allele count: 48
allele frequency: 4.419563936358279e-4
allele num: 108608
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1132-33G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.956-33G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.170G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000591673
  gene symbol: MGRN1
  hgvsc: ENST00000591673.1:n.538-33G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1066-33G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1132-33G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.250-33G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1066-33G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1249-33G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.104-33G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1069-33G>A
  variant of: http://identifiers.org/hgnc/20254
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6038
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5138
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 27956
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3135
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14040
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD

16-4731518-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731518
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731518
    reference: chr 16
allele count: 3
allele frequency: 2.762227460223925e-5
allele num: 108608
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1066-33G>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.956-33G>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.104-33G>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1066-33G>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1249-33G>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.170G>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1069-33G>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1132-33G>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.250-33G>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000591673
  gene symbol: MGRN1
  hgvsc: ENST00000591673.1:n.538-33G>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1132-33G>C
  variant of: http://identifiers.org/hgnc/20254
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14040
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3135
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6038
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5138
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27956
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5431
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD

16-4731519-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731519
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731519
    reference: chr 16
allele count: 3
allele frequency: 2.75709953129308e-5
allele num: 108810
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1066-32C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.956-32C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.171C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1132-32C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000591673
  gene symbol: MGRN1
  hgvsc: ENST00000591673.1:n.538-32C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1069-32C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1249-32C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1132-32C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.250-32C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.104-32C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1066-32C>T
  variant of: http://identifiers.org/hgnc/20254
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3153
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14268
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5044
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5778
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28287
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1087
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

16-4731521-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731521
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731521
    reference: chr 16
allele count: 4
allele frequency: 3.658915863229725e-5
allele num: 109322
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1069-30T>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.173T>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1132-30T>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.956-30T>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1066-30T>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.250-30T>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1132-30T>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.104-30T>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000591673
  gene symbol: MGRN1
  hgvsc: ENST00000591673.1:n.538-30T>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1249-30T>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1066-30T>C
  variant of: http://identifiers.org/hgnc/20254
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4956
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29411
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5079
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3150
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14509
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 681
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

16-4731521-TGA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731521
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731519
    reference: chr 16
allele count: 1
allele frequency: 9.147289658074313e-6
allele num: 109322
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1066-28_1066-27delAG
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1132-28_1132-27delAG
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.104-28_104-27delAG
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1066-28_1066-27delAG
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.175_176delAG
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.956-28_956-27delAG
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1069-28_1069-27delAG
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.250-28_250-27delAG
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1249-28_1249-27delAG
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000591673
  gene symbol: MGRN1
  hgvsc: ENST00000591673.1:n.538-28_538-27delAG
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1132-28_1132-27delAG
  variant of: http://identifiers.org/hgnc/20254
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5079
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29411
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14509
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4956
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3150
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 681
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: East Asian
reference allele: TGA
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

16-4731529-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731529
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731529
    reference: chr 16
allele count: 1
allele frequency: 8.993452766386071e-6
allele num: 111192
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1132-22C>G
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1249-22C>G
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.181C>G
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1069-22C>G
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1066-22C>G
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.250-22C>G
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1132-22C>G
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.956-22C>G
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.104-22C>G
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000591673
  gene symbol: MGRN1
  hgvsc: ENST00000591673.1:n.538-22C>G
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1066-22C>G
  variant of: http://identifiers.org/hgnc/20254
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 15946
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3342
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4232
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31003
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3400
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff

16-4731529-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731529
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731528
    reference: chr 16
allele count: 2
allele frequency: 1.798690553277214e-5
allele num: 111192
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1069-21delT
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.104-21delT
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.250-21delT
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1066-21delT
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1066-21delT
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.956-21delT
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1249-21delT
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.182delT
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1132-21delT
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000591673
  gene symbol: MGRN1
  hgvsc: ENST00000591673.1:n.538-21delT
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1132-21delT
  variant of: http://identifiers.org/hgnc/20254
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3400
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4232
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3342
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15946
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31003
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: CT
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

16-4731533-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731533
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731533
    reference: chr 16
allele count: 215
allele frequency: 1.917861985299365e-3
allele num: 112104
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1249-18C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1066-18C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.104-18C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.250-18C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1069-18C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.185C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1066-18C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1132-18C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1132-18C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000591673
  gene symbol: MGRN1
  hgvsc: ENST00000591673.1:n.538-18C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.956-18C>T
  variant of: http://identifiers.org/hgnc/20254
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 3827
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 3.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 16341
  bin: 2.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 1.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3461
  bin: 3.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 2721
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 31746
  bin: 2.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.25e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 3
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

16-4731537-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731537
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731537
    reference: chr 16
allele count: 2
allele frequency: 1.762828987959878e-5
allele num: 113454
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1132-14C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.189C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1132-14C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.956-14C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1066-14C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.104-14C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.250-14C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000591673
  gene symbol: MGRN1
  hgvsc: ENST00000591673.1:n.538-14C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1066-14C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1069-14C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1249-14C>T
  variant of: http://identifiers.org/hgnc/20254
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3515
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3275
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32765
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16866
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

16-4731538-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731538
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731538
    reference: chr 16
allele count: 1
allele frequency: 8.797241185164333e-6
allele num: 113672
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1069-13C>G
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1132-13C>G
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.956-13C>G
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1066-13C>G
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1132-13C>G
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.250-13C>G
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.104-13C>G
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1249-13C>G
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.190C>G
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1066-13C>G
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000591673
  gene symbol: MGRN1
  hgvsc: ENST00000591673.1:n.538-13C>G
  variant of: http://identifiers.org/hgnc/20254
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3544
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3181
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1961
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16970
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32837
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3514
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

16-4731541-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731541
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731541
    reference: chr 16
allele count: 1
allele frequency: 8.74630468627005e-6
allele num: 114334
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.193G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1132-10G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000591673
  gene symbol: MGRN1
  hgvsc: ENST00000591673.1:n.538-10G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1069-10G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1132-10G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1066-10G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.956-10G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.104-10G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.250-10G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1066-10G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1249-10G>A
  variant of: http://identifiers.org/hgnc/20254
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2914
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1708
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17158
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33231
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3560
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1199
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

16-4731547-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731547
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731547
    reference: chr 16
allele count: 2
allele frequency: 1.732651823616044e-5
allele num: 115430
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1132-4A>G
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1066-4A>G
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.250-4A>G
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.104-4A>G
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1069-4A>G
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1066-4A>G
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1132-4A>G
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.956-4A>G
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000591673
  gene symbol: MGRN1
  hgvsc: ENST00000591673.1:n.538-4A>G
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1249-4A>G
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.199A>G
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3616
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17485
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33766
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1132-4A>G
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

16-4731561-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731561
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731561
    reference: chr 16
allele count: 1
allele frequency: 8.535481998668465e-6
allele num: 117158
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.114G>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.*3G>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1079G>C
  hgvsp: ENSP00000393311.1:p.Ser360Thr
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1076G>C
  hgvsp: ENSP00000465860.1:p.Ser359Thr
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1076G>C
  hgvsp: ENSP00000468819.1:p.Ser359Thr
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000591673
  gene symbol: MGRN1
  hgvsc: ENST00000591673.1:n.548G>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1142G>C
  hgvsp: ENSP00000262370.6:p.Ser381Thr
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1259G>C
  hgvsp: ENSP00000467414.1:p.Ser420Thr
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1142G>C
  hgvsp: ENSP00000382487.4:p.Ser381Thr
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.213G>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.260G>C
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3674
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34610
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17987
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser381Thr
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

16-4731563-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731563
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731563
    reference: chr 16
allele count: 1
allele frequency: 8.510928031592565e-6
allele num: 117496
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1144G>A
  hgvsp: ENSP00000382487.4:p.Val382Ile
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1078G>A
  hgvsp: ENSP00000468819.1:p.Val360Ile
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1078G>A
  hgvsp: ENSP00000465860.1:p.Val360Ile
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.116G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.262G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000591673
  gene symbol: MGRN1
  hgvsc: ENST00000591673.1:n.550G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1261G>A
  hgvsp: ENSP00000467414.1:p.Val421Ile
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.215G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1081G>A
  hgvsp: ENSP00000393311.1:p.Val361Ile
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1144G>A
  hgvsp: ENSP00000262370.6:p.Val382Ile
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.*5G>A
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18134
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34677
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3706
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val382Ile
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

16-4731565-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731565
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731565
    reference: chr 16
allele count: 1
allele frequency: 8.499065102838687e-6
allele num: 117660
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000591673
  gene symbol: MGRN1
  hgvsc: ENST00000591673.1:n.552C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1263C>T
  hgvsp: ENST00000587747.1:c.1263C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1080C>T
  hgvsp: ENST00000588994.1:c.1080C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.118C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1080C>T
  hgvsp: ENST00000586183.1:c.1080C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1146C>T
  hgvsp: ENST00000399577.5:c.1146C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1083C>T
  hgvsp: ENST00000415496.1:c.1083C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1146C>T
  hgvsp: ENST00000262370.7:c.1146C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.217C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.*7C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.264C>T
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3694
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18224
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34803
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val382Val
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ

16-4731571-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731571
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731571
    reference: chr 16
allele count: 1
allele frequency: 8.47314014573801e-6
allele num: 118020
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.223T>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.270T>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.124T>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1086T>C
  hgvsp: ENST00000586183.1:c.1086T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000591673
  gene symbol: MGRN1
  hgvsc: ENST00000591673.1:n.558T>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1089T>C
  hgvsp: ENST00000415496.1:c.1089T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1152T>C
  hgvsp: ENST00000399577.5:c.1152T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1269T>C
  hgvsp: ENST00000587747.1:c.1269T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1152T>C
  hgvsp: ENST00000262370.7:c.1152T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1086T>C
  hgvsp: ENST00000588994.1:c.1086T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.*13T>C
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3739
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34901
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18363
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro384Pro
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum

16-4731577-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731577
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731577
    reference: chr 16
allele count: 6
allele frequency: 5.074596569572719e-5
allele num: 118236
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1092C>T
  hgvsp: ENST00000588994.1:c.1092C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.276C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1158C>T
  hgvsp: ENST00000399577.5:c.1158C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.229C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000591673
  gene symbol: MGRN1
  hgvsc: ENST00000591673.1:n.564C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1158C>T
  hgvsp: ENST00000262370.7:c.1158C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1095C>T
  hgvsp: ENST00000415496.1:c.1095C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.130C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.*19C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1092C>T
  hgvsp: ENST00000586183.1:c.1092C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1275C>T
  hgvsp: ENST00000587747.1:c.1275C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34888
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3772
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18494
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Tyr386Tyr
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD

16-4731578-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731578
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731578
    reference: chr 16
allele count: 1
allele frequency: 8.453228287883143e-6
allele num: 118298
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1276G>C
  hgvsp: ENSP00000467414.1:p.Glu426Gln
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1093G>C
  hgvsp: ENSP00000468819.1:p.Glu365Gln
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.277G>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000591673
  gene symbol: MGRN1
  hgvsc: ENST00000591673.1:n.565G>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1093G>C
  hgvsp: ENSP00000465860.1:p.Glu365Gln
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1096G>C
  hgvsp: ENSP00000393311.1:p.Glu366Gln
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.131G>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1159G>C
  hgvsp: ENSP00000382487.4:p.Glu387Gln
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.*20G>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1159G>C
  hgvsp: ENSP00000262370.6:p.Glu387Gln
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.230G>C
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34928
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18549
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3759
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu387Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

16-4731578-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731578
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731578
    reference: chr 16
allele count: 1
allele frequency: 8.453228287883143e-6
allele num: 118298
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1093G>A
  hgvsp: ENSP00000465860.1:p.Glu365Lys
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1159G>A
  hgvsp: ENSP00000382487.4:p.Glu387Lys
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.277G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000591673
  gene symbol: MGRN1
  hgvsc: ENST00000591673.1:n.565G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1276G>A
  hgvsp: ENSP00000467414.1:p.Glu426Lys
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1159G>A
  hgvsp: ENSP00000262370.6:p.Glu387Lys
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1093G>A
  hgvsp: ENSP00000468819.1:p.Glu365Lys
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.*20G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.131G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.230G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1096G>A
  hgvsp: ENSP00000393311.1:p.Glu366Lys
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3759
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18549
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34928
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu387Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

16-4731583-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731583
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731583
    reference: chr 16
allele count: 1
allele frequency: 8.443521286117163e-6
allele num: 118434
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1098C>G
  hgvsp: ENST00000588994.1:c.1098C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1164C>G
  hgvsp: ENST00000399577.5:c.1164C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.282C>G
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1101C>G
  hgvsp: ENST00000415496.1:c.1101C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.235C>G
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.*25C>G
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1281C>G
  hgvsp: ENST00000587747.1:c.1281C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1098C>G
  hgvsp: ENST00000586183.1:c.1098C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1164C>G
  hgvsp: ENST00000262370.7:c.1164C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.136C>G
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34914
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3775
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18648
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro388Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

16-4731588-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731588
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731588
    reference: chr 16
allele count: 1
allele frequency: 8.441525552497847e-6
allele num: 118462
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1286C>T
  hgvsp: ENSP00000467414.1:p.Ser429Leu
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.141C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1169C>T
  hgvsp: ENSP00000382487.4:p.Ser390Leu
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1103C>T
  hgvsp: ENSP00000465860.1:p.Ser368Leu
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1169C>T
  hgvsp: ENSP00000262370.6:p.Ser390Leu
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.287C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.240C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1106C>T
  hgvsp: ENSP00000393311.1:p.Ser369Leu
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.*30C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1103C>T
  hgvsp: ENSP00000468819.1:p.Ser368Leu
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3787
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34862
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18691
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser390Leu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum

16-4731589-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731589
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731589
    reference: chr 16
allele count: 2
allele frequency: 1.688248104941502e-5
allele num: 118466
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.142G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1107G>A
  hgvsp: ENST00000415496.1:c.1107G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1170G>A
  hgvsp: ENST00000262370.7:c.1170G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1170G>A
  hgvsp: ENST00000399577.5:c.1170G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1104G>A
  hgvsp: ENST00000586183.1:c.1104G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1287G>A
  hgvsp: ENST00000587747.1:c.1287G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1104G>A
  hgvsp: ENST00000588994.1:c.1104G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.288G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.241G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.*31G>A
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34807
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18714
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3801
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser390Ser
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ

16-4731589-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731589
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731589
    reference: chr 16
allele count: 1
allele frequency: 8.441240524707511e-6
allele num: 118466
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.241G>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1170G>T
  hgvsp: ENST00000262370.7:c.1170G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1104G>T
  hgvsp: ENST00000588994.1:c.1104G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1104G>T
  hgvsp: ENST00000586183.1:c.1104G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1107G>T
  hgvsp: ENST00000415496.1:c.1107G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1170G>T
  hgvsp: ENST00000399577.5:c.1170G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1287G>T
  hgvsp: ENST00000587747.1:c.1287G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.288G>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.*31G>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.142G>T
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3801
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18714
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34807
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1298
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser390Ser
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD

16-4731595-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731595
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731595
    reference: chr 16
allele count: 1
allele frequency: 8.435259384226064e-6
allele num: 118550
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1293C>T
  hgvsp: ENST00000587747.1:c.1293C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1110C>T
  hgvsp: ENST00000586183.1:c.1110C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1176C>T
  hgvsp: ENST00000399577.5:c.1176C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1113C>T
  hgvsp: ENST00000415496.1:c.1113C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1176C>T
  hgvsp: ENST00000262370.7:c.1176C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1110C>T
  hgvsp: ENST00000588994.1:c.1110C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.*37C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.294C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.148C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.247C>T
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3804
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34773
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18804
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu392Leu
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

16-4731596-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731596
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731596
    reference: chr 16
allele count: 1
allele frequency: 8.433836552247617e-6
allele num: 118570
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1114G>A
  hgvsp: ENSP00000393311.1:p.Glu372Lys
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.*38G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.248G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1111G>A
  hgvsp: ENSP00000465860.1:p.Glu371Lys
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1111G>A
  hgvsp: ENSP00000468819.1:p.Glu371Lys
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.149G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1177G>A
  hgvsp: ENSP00000382487.4:p.Glu393Lys
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1177G>A
  hgvsp: ENSP00000262370.6:p.Glu393Lys
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.295G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1294G>A
  hgvsp: ENSP00000467414.1:p.Glu432Lys
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3806
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34772
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18815
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6309
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Glu393Lys
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ

16-4731596-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731596
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731596
    reference: chr 16
allele count: 1
allele frequency: 8.433836552247617e-6
allele num: 118570
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1111G>C
  hgvsp: ENSP00000465860.1:p.Glu371Gln
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1177G>C
  hgvsp: ENSP00000262370.6:p.Glu393Gln
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.149G>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1114G>C
  hgvsp: ENSP00000393311.1:p.Glu372Gln
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.248G>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1111G>C
  hgvsp: ENSP00000468819.1:p.Glu371Gln
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1177G>C
  hgvsp: ENSP00000382487.4:p.Glu393Gln
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1294G>C
  hgvsp: ENSP00000467414.1:p.Glu432Gln
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.*38G>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.295G>C
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18815
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34772
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3806
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48968
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu393Gln
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum

16-4731600-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731600
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731600
    reference: chr 16
allele count: 3
allele frequency: 2.53151739152448e-5
allele num: 118506
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1115C>T
  hgvsp: ENSP00000465860.1:p.Ala372Val
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.299C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.*42C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1298C>T
  hgvsp: ENSP00000467414.1:p.Ala433Val
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1115C>T
  hgvsp: ENSP00000468819.1:p.Ala372Val
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.252C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1181C>T
  hgvsp: ENSP00000262370.6:p.Ala394Val
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.153C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1181C>T
  hgvsp: ENSP00000382487.4:p.Ala394Val
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1118C>T
  hgvsp: ENSP00000393311.1:p.Ala373Val
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34546
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3820
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18779
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala394Val
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD

16-4731601-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731601
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731601
    reference: chr 16
allele count: 5
allele frequency: 4.2191956525408e-5
allele num: 118506
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1182G>A
  hgvsp: ENST00000262370.7:c.1182G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1119G>A
  hgvsp: ENST00000415496.1:c.1119G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.*43G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1116G>A
  hgvsp: ENST00000586183.1:c.1116G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1299G>A
  hgvsp: ENST00000587747.1:c.1299G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1182G>A
  hgvsp: ENST00000399577.5:c.1182G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.154G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.253G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1116G>A
  hgvsp: ENST00000588994.1:c.1116G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.300G>A
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18795
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34532
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6260
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala394Ala
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/16-4731602-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731602
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731602
    reference: chr 16
allele count: 1
allele frequency: 8.439958137807636e-6
allele num: 118484
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1300C>A
  hgvsp: ENSP00000467414.1:p.Leu434Ile
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.155C>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1183C>A
  hgvsp: ENSP00000382487.4:p.Leu395Ile
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1120C>A
  hgvsp: ENSP00000393311.1:p.Leu374Ile
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.*44C>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1117C>A
  hgvsp: ENSP00000465860.1:p.Leu373Ile
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.301C>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.254C>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1117C>A
  hgvsp: ENSP00000468819.1:p.Leu373Ile
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1183C>A
  hgvsp: ENSP00000262370.6:p.Leu395Ile
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34488
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18753
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3827
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 968
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu395Ile
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ

16-4731602-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731602
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731602
    reference: chr 16
allele count: 8
allele frequency: 6.751966510246109e-5
allele num: 118484
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1183C>G
  hgvsp: ENSP00000382487.4:p.Leu395Val
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1120C>G
  hgvsp: ENSP00000393311.1:p.Leu374Val
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.*44C>G
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1117C>G
  hgvsp: ENSP00000468819.1:p.Leu373Val
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1300C>G
  hgvsp: ENSP00000467414.1:p.Leu434Val
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.301C>G
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.254C>G
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1183C>G
  hgvsp: ENSP00000262370.6:p.Leu395Val
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.155C>G
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1117C>G
  hgvsp: ENSP00000465860.1:p.Leu373Val
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34488
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3827
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18753
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 968
  bin: 7.75e1
  variant carriers: 1
hgvs: p.Leu395Val
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

16-4731606-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731606
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731606
    reference: chr 16
allele count: 1
allele frequency: 8.440100605999223e-6
allele num: 118482
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1187A>G
  hgvsp: ENSP00000262370.6:p.Asn396Ser
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1124A>G
  hgvsp: ENSP00000393311.1:p.Asn375Ser
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.*48A>G
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1121A>G
  hgvsp: ENSP00000465860.1:p.Asn374Ser
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1304A>G
  hgvsp: ENSP00000467414.1:p.Asn435Ser
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1187A>G
  hgvsp: ENSP00000382487.4:p.Asn396Ser
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1121A>G
  hgvsp: ENSP00000468819.1:p.Asn374Ser
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.305A>G
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.159A>G
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.258A>G
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3817
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34516
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18734
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 967
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asn396Ser
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

16-4731606-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731606
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731606
    reference: chr 16
allele count: 1
allele frequency: 8.440100605999223e-6
allele num: 118482
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.*48A>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.258A>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1187A>T
  hgvsp: ENSP00000382487.4:p.Asn396Ile
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1124A>T
  hgvsp: ENSP00000393311.1:p.Asn375Ile
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1121A>T
  hgvsp: ENSP00000468819.1:p.Asn374Ile
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.305A>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1121A>T
  hgvsp: ENSP00000465860.1:p.Asn374Ile
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1304A>T
  hgvsp: ENSP00000467414.1:p.Asn435Ile
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.159A>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1187A>T
  hgvsp: ENSP00000262370.6:p.Asn396Ile
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3817
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34516
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18734
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asn396Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
reference allele: A
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

16-4731607-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731607
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731607
    reference: chr 16
allele count: 9
allele frequency: 7.596218771100608e-5
allele num: 118480
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.*49C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.259C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.160C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1188C>T
  hgvsp: ENST00000399577.5:c.1188C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1125C>T
  hgvsp: ENST00000415496.1:c.1125C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1122C>T
  hgvsp: ENST00000586183.1:c.1122C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1188C>T
  hgvsp: ENST00000262370.7:c.1188C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1305C>T
  hgvsp: ENST00000587747.1:c.1305C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1122C>T
  hgvsp: ENST00000588994.1:c.1122C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.306C>T
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34505
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3805
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18740
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48543
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asn396Asn
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

16-4731609-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731609
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731609
    reference: chr 16
allele count: 1
allele frequency: 8.441240524707511e-6
allele num: 118466
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.308G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1127G>A
  hgvsp: ENSP00000393311.1:p.Gly376Asp
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1124G>A
  hgvsp: ENSP00000465860.1:p.Gly375Asp
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1124G>A
  hgvsp: ENSP00000468819.1:p.Gly375Asp
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1190G>A
  hgvsp: ENSP00000382487.4:p.Gly397Asp
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.*51G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.261G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1190G>A
  hgvsp: ENSP00000262370.6:p.Gly397Asp
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1307G>A
  hgvsp: ENSP00000467414.1:p.Gly436Asp
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.162G>A
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18763
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34510
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3794
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gly397Asp
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

16-4731613-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731613
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731613
    reference: chr 16
allele count: 1
allele frequency: 8.439530762089629e-6
allele num: 118490
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.312C>G
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1128C>G
  hgvsp: ENST00000586183.1:c.1128C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.265C>G
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.166C>G
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1128C>G
  hgvsp: ENST00000588994.1:c.1128C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1194C>G
  hgvsp: ENST00000399577.5:c.1194C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1194C>G
  hgvsp: ENST00000262370.7:c.1194C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1131C>G
  hgvsp: ENST00000415496.1:c.1131C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1311C>G
  hgvsp: ENST00000587747.1:c.1311C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.*55C>G
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18751
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3794
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34525
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6260
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu398Leu
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum

16-4731614-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731614
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731614
    reference: chr 16
allele count: 3
allele frequency: 2.532585939082866e-5
allele num: 118456
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.*56C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1195C>T
  hgvsp: ENSP00000262370.6:p.Arg399Trp
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1132C>T
  hgvsp: ENSP00000393311.1:p.Arg378Trp
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1195C>T
  hgvsp: ENSP00000382487.4:p.Arg399Trp
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.313C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.167C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1312C>T
  hgvsp: ENSP00000467414.1:p.Arg438Trp
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1129C>T
  hgvsp: ENSP00000465860.1:p.Arg377Trp
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1129C>T
  hgvsp: ENSP00000468819.1:p.Arg377Trp
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.266C>T
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34511
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18750
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1367
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg399Trp
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS

16-4731625-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731625
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731625
    reference: chr 16
allele count: 1
allele frequency: 8.446231291597689e-6
allele num: 118396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1140C>T
  hgvsp: ENST00000586183.1:c.1140C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1140C>T
  hgvsp: ENST00000588994.1:c.1140C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1206C>T
  hgvsp: ENST00000262370.7:c.1206C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1206C>T
  hgvsp: ENST00000399577.5:c.1206C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.277C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.*67C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.324C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1323C>T
  hgvsp: ENST00000587747.1:c.1323C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.178C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1143C>T
  hgvsp: ENST00000415496.1:c.1143C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18758
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3821
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34425
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6258
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser402Ser
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

16-4731627-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731627
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731627
    reference: chr 16
allele count: 1
allele frequency: 8.444376889429329e-6
allele num: 118422
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1208C>T
  hgvsp: ENSP00000382487.4:p.Pro403Leu
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1208C>T
  hgvsp: ENSP00000262370.6:p.Pro403Leu
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1325C>T
  hgvsp: ENSP00000467414.1:p.Pro442Leu
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.279C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1142C>T
  hgvsp: ENSP00000465860.1:p.Pro381Leu
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.326C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.*69C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1145C>T
  hgvsp: ENSP00000393311.1:p.Pro382Leu
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1142C>T
  hgvsp: ENSP00000468819.1:p.Pro381Leu
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.180C>T
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18775
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3822
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34425
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro403Leu
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum

16-4731628-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731628
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731628
    reference: chr 16
allele count: 5
allele frequency: 4.221974533049616e-5
allele num: 118428
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.*70G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1143G>A
  hgvsp: ENST00000588994.1:c.1143G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.280G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1209G>A
  hgvsp: ENST00000262370.7:c.1209G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1143G>A
  hgvsp: ENST00000586183.1:c.1143G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1209G>A
  hgvsp: ENST00000399577.5:c.1209G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1326G>A
  hgvsp: ENST00000587747.1:c.1326G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.327G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.181G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1146G>A
  hgvsp: ENST00000415496.1:c.1146G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3816
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34428
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18773
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro403Pro
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

16-4731637-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731637
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731637
    reference: chr 16
allele count: 1
allele frequency: 8.453514125822104e-6
allele num: 118294
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.190C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1152C>T
  hgvsp: ENST00000588994.1:c.1152C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1218C>T
  hgvsp: ENST00000262370.7:c.1218C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.289C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1152C>T
  hgvsp: ENST00000586183.1:c.1152C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1335C>T
  hgvsp: ENST00000587747.1:c.1335C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1218C>T
  hgvsp: ENST00000399577.5:c.1218C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.336C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1155C>T
  hgvsp: ENST00000415496.1:c.1155C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.*79C>T
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3819
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34389
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18686
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro406Pro
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQ

16-4731639-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731639
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731639
    reference: chr 16
allele count: 1
allele frequency: 8.453228287883143e-6
allele num: 118298
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1157C>T
  hgvsp: ENSP00000393311.1:p.Ser386Leu
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1154C>T
  hgvsp: ENSP00000465860.1:p.Ser385Leu
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.*81C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.192C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1220C>T
  hgvsp: ENSP00000382487.4:p.Ser407Leu
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.291C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1154C>T
  hgvsp: ENSP00000468819.1:p.Ser385Leu
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1220C>T
  hgvsp: ENSP00000262370.6:p.Ser407Leu
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1337C>T
  hgvsp: ENSP00000467414.1:p.Ser446Leu
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.338C>T
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3812
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34409
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18702
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1490
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser407Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

16-4731645-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731645
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731645
    reference: chr 16
allele count: 2
allele frequency: 1.690559913443332e-5
allele num: 118304
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.297C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1226C>T
  hgvsp: ENSP00000382487.4:p.Pro409Leu
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1160C>T
  hgvsp: ENSP00000468819.1:p.Pro387Leu
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1163C>T
  hgvsp: ENSP00000393311.1:p.Pro388Leu
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.198C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.*87C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1343C>T
  hgvsp: ENSP00000467414.1:p.Pro448Leu
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1226C>T
  hgvsp: ENSP00000262370.6:p.Pro409Leu
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.344C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1160C>T
  hgvsp: ENSP00000465860.1:p.Pro387Leu
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3797
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34504
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18698
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48703
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro409Leu
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP

16-4731650-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731650
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731650
    reference: chr 16
allele count: 1
allele frequency: 8.454943605526151e-6
allele num: 118274
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1168T>C
  hgvsp: ENSP00000393311.1:p.Tyr390His
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.*92T>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1165T>C
  hgvsp: ENSP00000468819.1:p.Tyr389His
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1348T>C
  hgvsp: ENSP00000467414.1:p.Tyr450His
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.349T>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1231T>C
  hgvsp: ENSP00000262370.6:p.Tyr411His
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.203T>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1231T>C
  hgvsp: ENSP00000382487.4:p.Tyr411His
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1165T>C
  hgvsp: ENSP00000465860.1:p.Tyr389His
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.302T>C
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3796
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18685
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34540
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Tyr411His
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

16-4731650-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731650
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731650
    reference: chr 16
allele count: 2
allele frequency: 1.69098872110523e-5
allele num: 118274
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.*92T>G
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1231T>G
  hgvsp: ENSP00000262370.6:p.Tyr411Asp
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.203T>G
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1168T>G
  hgvsp: ENSP00000393311.1:p.Tyr390Asp
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.302T>G
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1165T>G
  hgvsp: ENSP00000468819.1:p.Tyr389Asp
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1231T>G
  hgvsp: ENSP00000382487.4:p.Tyr411Asp
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1348T>G
  hgvsp: ENSP00000467414.1:p.Tyr450Asp
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1165T>G
  hgvsp: ENSP00000465860.1:p.Tyr389Asp
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.349T>G
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34540
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3796
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18685
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Tyr411Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/16-4731657-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731657
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731657
    reference: chr 16
allele count: 1
allele frequency: 8.455372543714276e-6
allele num: 118268
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1175A>C
  hgvsp: ENSP00000393311.1:p.Glu392Ala
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.356A>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.210A>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1172A>C
  hgvsp: ENSP00000465860.1:p.Glu391Ala
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.309A>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.*99A>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1238A>C
  hgvsp: ENSP00000382487.4:p.Glu413Ala
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1172A>C
  hgvsp: ENSP00000468819.1:p.Glu391Ala
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1238A>C
  hgvsp: ENSP00000262370.6:p.Glu413Ala
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1355A>C
  hgvsp: ENSP00000467414.1:p.Glu452Ala
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3787
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18687
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34548
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu413Ala
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

16-4731661-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731661
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731661
    reference: chr 16
allele count: 1
allele frequency: 8.458233244239943e-6
allele num: 118228
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.*103C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1242C>T
  hgvsp: ENST00000399577.5:c.1242C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.360C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1359C>T
  hgvsp: ENST00000587747.1:c.1359C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.214C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1176C>T
  hgvsp: ENST00000588994.1:c.1176C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.313C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1176C>T
  hgvsp: ENST00000586183.1:c.1176C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1179C>T
  hgvsp: ENST00000415496.1:c.1179C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1242C>T
  hgvsp: ENST00000262370.7:c.1242C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3793
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34519
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18689
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ile414Ile
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP

16-4731663-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731663
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731663
    reference: chr 16
allele count: 11
allele frequency: 9.306103111622477e-5
allele num: 118202
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1244C>T
  hgvsp: ENSP00000262370.6:p.Thr415Ile
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.*105C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1361C>T
  hgvsp: ENSP00000467414.1:p.Thr454Ile
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.315C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1178C>T
  hgvsp: ENSP00000468819.1:p.Thr393Ile
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1181C>T
  hgvsp: ENSP00000393311.1:p.Thr394Ile
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1178C>T
  hgvsp: ENSP00000465860.1:p.Thr393Ile
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1244C>T
  hgvsp: ENSP00000382487.4:p.Thr415Ile
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.216C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.362C>T
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18690
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34490
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3788
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1262
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1591
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr415Ile
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ

16-4731669-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731669
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731669
    reference: chr 16
allele count: 1
allele frequency: 8.464533604198409e-6
allele num: 118140
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1187C>T
  hgvsp: ENSP00000393311.1:p.Ser396Leu
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1367C>T
  hgvsp: ENSP00000467414.1:p.Ser456Leu
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1250C>T
  hgvsp: ENSP00000382487.4:p.Ser417Leu
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1184C>T
  hgvsp: ENSP00000468819.1:p.Ser395Leu
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.321C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.*111C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.222C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1184C>T
  hgvsp: ENSP00000465860.1:p.Ser395Leu
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1250C>T
  hgvsp: ENSP00000262370.6:p.Ser417Leu
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.368C>T
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34429
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18705
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3785
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser417Leu
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

16-4731672-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731672
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731672
    reference: chr 16
allele count: 1
allele frequency: 8.467257116729607e-6
allele num: 118102
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.*114G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1370G>A
  hgvsp: ENSP00000467414.1:p.Gly457Asp
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1253G>A
  hgvsp: ENSP00000262370.6:p.Gly418Asp
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1187G>A
  hgvsp: ENSP00000465860.1:p.Gly396Asp
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1253G>A
  hgvsp: ENSP00000382487.4:p.Gly418Asp
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1190G>A
  hgvsp: ENSP00000393311.1:p.Gly397Asp
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1187G>A
  hgvsp: ENSP00000468819.1:p.Gly396Asp
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.324G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.371G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.225G>A
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18696
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3780
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34422
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gly418Asp
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

16-4731675-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731675
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731675
    reference: chr 16
allele count: 1
allele frequency: 8.468834688346883e-6
allele num: 118080
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1256T>A
  hgvsp: ENSP00000382487.4:p.Ile419Asn
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1190T>A
  hgvsp: ENSP00000465860.1:p.Ile397Asn
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1190T>A
  hgvsp: ENSP00000468819.1:p.Ile397Asn
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1373T>A
  hgvsp: ENSP00000467414.1:p.Ile458Asn
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1193T>A
  hgvsp: ENSP00000393311.1:p.Ile398Asn
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.*117T>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.228T>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1256T>A
  hgvsp: ENSP00000262370.6:p.Ile419Asn
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.327T>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.374T>A
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3774
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34378
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18688
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ile419Asn
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

16-4731676-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731676
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731676
    reference: chr 16
allele count: 1
allele frequency: 8.473570932262274e-6
allele num: 118014
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1191C>T
  hgvsp: ENST00000588994.1:c.1191C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.229C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1194C>T
  hgvsp: ENST00000415496.1:c.1194C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.328C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1374C>T
  hgvsp: ENST00000587747.1:c.1374C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.375C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1257C>T
  hgvsp: ENST00000262370.7:c.1257C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1257C>T
  hgvsp: ENST00000399577.5:c.1257C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1191C>T
  hgvsp: ENST00000586183.1:c.1191C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.*118C>T
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18664
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3774
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34345
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ile419Ile
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

16-4731678-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731678
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731678
    reference: chr 16
allele count: 5
allele frequency: 4.236929073807304e-5
allele num: 118010
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.330C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1259C>T
  hgvsp: ENSP00000262370.6:p.Ser420Leu
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.*120C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.377C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1193C>T
  hgvsp: ENSP00000468819.1:p.Ser398Leu
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1376C>T
  hgvsp: ENSP00000467414.1:p.Ser459Leu
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1193C>T
  hgvsp: ENSP00000465860.1:p.Ser398Leu
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1196C>T
  hgvsp: ENSP00000393311.1:p.Ser399Leu
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1259C>T
  hgvsp: ENSP00000382487.4:p.Ser420Leu
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.231C>T
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3772
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18660
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34354
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 957
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1258
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser420Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
reference allele: C
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

16-4731679-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731679
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731679
    reference: chr 16
allele count: 7
allele frequency: 5.932605600379687e-5
allele num: 117992
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1377G>A
  hgvsp: ENST00000587747.1:c.1377G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.232G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.378G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1260G>A
  hgvsp: ENST00000262370.7:c.1260G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1197G>A
  hgvsp: ENST00000415496.1:c.1197G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.331G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1194G>A
  hgvsp: ENST00000586183.1:c.1194G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1260G>A
  hgvsp: ENST00000399577.5:c.1260G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1194G>A
  hgvsp: ENST00000588994.1:c.1194G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.*121G>A
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3772
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34353
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18660
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 48536
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser420Ser
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

16-4731680-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731680
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731680
    reference: chr 16
allele count: 5
allele frequency: 4.237288135593221e-5
allele num: 118000
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.332G>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1195G>C
  hgvsp: ENSP00000468819.1:p.Asp399His
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1261G>C
  hgvsp: ENSP00000382487.4:p.Asp421His
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1261G>C
  hgvsp: ENSP00000262370.6:p.Asp421His
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1378G>C
  hgvsp: ENSP00000467414.1:p.Asp460His
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.233G>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1195G>C
  hgvsp: ENSP00000465860.1:p.Asp399His
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.*122G>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.379G>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1198G>C
  hgvsp: ENSP00000393311.1:p.Asp400His
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18656
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34347
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3768
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48524
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1787
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp421His
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/16-4731682-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731682
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731682
    reference: chr 16
allele count: 1
allele frequency: 8.480181815098116e-6
allele num: 117922
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.381C>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1200C>A
  hgvsp: ENSP00000393311.1:p.Asp400Glu
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.334C>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1380C>A
  hgvsp: ENSP00000467414.1:p.Asp460Glu
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1263C>A
  hgvsp: ENSP00000262370.6:p.Asp421Glu
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1197C>A
  hgvsp: ENSP00000468819.1:p.Asp399Glu
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1263C>A
  hgvsp: ENSP00000382487.4:p.Asp421Glu
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.235C>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.*124C>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1197C>A
  hgvsp: ENSP00000465860.1:p.Asp399Glu
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18646
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3769
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34320
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1789
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp421Glu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff

16-4731682-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731682
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731682
    reference: chr 16
allele count: 6
allele frequency: 5.088109089058869e-5
allele num: 117922
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.334C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.235C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1197C>T
  hgvsp: ENST00000586183.1:c.1197C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1197C>T
  hgvsp: ENST00000588994.1:c.1197C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1263C>T
  hgvsp: ENST00000399577.5:c.1263C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1263C>T
  hgvsp: ENST00000262370.7:c.1263C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1200C>T
  hgvsp: ENST00000415496.1:c.1200C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1380C>T
  hgvsp: ENST00000587747.1:c.1380C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.381C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.*124C>T
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3769
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18646
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34320
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1252
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asp421Asp
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

16-4731683-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731683
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731683
    reference: chr 16
allele count: 7
allele frequency: 5.935925919644523e-5
allele num: 117926
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.236G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1381G>A
  hgvsp: ENSP00000467414.1:p.Gly461Ser
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1201G>A
  hgvsp: ENSP00000393311.1:p.Gly401Ser
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1264G>A
  hgvsp: ENSP00000262370.6:p.Gly422Ser
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.382G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1264G>A
  hgvsp: ENSP00000382487.4:p.Gly422Ser
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1198G>A
  hgvsp: ENSP00000465860.1:p.Gly400Ser
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.335G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1198G>A
  hgvsp: ENSP00000468819.1:p.Gly400Ser
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.*125G>A
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18654
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34331
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3767
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 953
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly422Ser
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

16-4731683-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731683
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731683
    reference: chr 16
allele count: 1
allele frequency: 8.479894170920747e-6
allele num: 117926
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.382G>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.*125G>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1264G>C
  hgvsp: ENSP00000262370.6:p.Gly422Arg
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1201G>C
  hgvsp: ENSP00000393311.1:p.Gly401Arg
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1198G>C
  hgvsp: ENSP00000465860.1:p.Gly400Arg
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.236G>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1198G>C
  hgvsp: ENSP00000468819.1:p.Gly400Arg
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1264G>C
  hgvsp: ENSP00000382487.4:p.Gly422Arg
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.335G>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1381G>C
  hgvsp: ENSP00000467414.1:p.Gly461Arg
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34331
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3767
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18654
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly422Arg
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

16-4731688-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731688
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731688
    reference: chr 16
allele count: 1
allele frequency: 8.483491126268282e-6
allele num: 117876
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.241G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1206G>A
  hgvsp: ENST00000415496.1:c.1206G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1203G>A
  hgvsp: ENST00000586183.1:c.1203G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1386G>A
  hgvsp: ENST00000587747.1:c.1386G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1269G>A
  hgvsp: ENST00000262370.7:c.1269G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1203G>A
  hgvsp: ENST00000588994.1:c.1203G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1269G>A
  hgvsp: ENST00000399577.5:c.1269G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.*130G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.340G>A
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.387G>A
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18636
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3754
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34330
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1241
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6193
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu423Leu
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

16-4731688-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731688
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731688
    reference: chr 16
allele count: 2
allele frequency: 1.696698225253656e-5
allele num: 117876
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1386G>C
  hgvsp: ENST00000587747.1:c.1386G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.340G>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.387G>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1269G>C
  hgvsp: ENST00000262370.7:c.1269G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1203G>C
  hgvsp: ENST00000588994.1:c.1203G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1203G>C
  hgvsp: ENST00000586183.1:c.1203G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1206G>C
  hgvsp: ENST00000415496.1:c.1206G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1269G>C
  hgvsp: ENST00000399577.5:c.1269G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.*130G>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.241G>C
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3754
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18636
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34330
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu423Leu
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD

16-4731688-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731688
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731688
    reference: chr 16
allele count: 1
allele frequency: 8.483491126268282e-6
allele num: 117876
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.241G>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1269G>T
  hgvsp: ENST00000399577.5:c.1269G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1203G>T
  hgvsp: ENST00000588994.1:c.1203G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1269G>T
  hgvsp: ENST00000262370.7:c.1269G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1386G>T
  hgvsp: ENST00000587747.1:c.1386G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1206G>T
  hgvsp: ENST00000415496.1:c.1206G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1203G>T
  hgvsp: ENST00000586183.1:c.1203G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.340G>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.387G>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.*130G>T
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3754
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34330
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18636
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu423Leu
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD

16-4731692-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731692
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731692
    reference: chr 16
allele count: 1
allele frequency: 8.4870911343846e-6
allele num: 117826
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1207C>G
  hgvsp: ENSP00000468819.1:p.Gln403Glu
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.344C>G
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.245C>G
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1273C>G
  hgvsp: ENSP00000382487.4:p.Gln425Glu
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1273C>G
  hgvsp: ENSP00000262370.6:p.Gln425Glu
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1207C>G
  hgvsp: ENSP00000465860.1:p.Gln403Glu
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1210C>G
  hgvsp: ENSP00000393311.1:p.Gln404Glu
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.391C>G
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1390C>G
  hgvsp: ENSP00000467414.1:p.Gln464Glu
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.*134C>G
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3753
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34271
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18627
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gln425Glu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

16-4731693-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731693
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731693
    reference: chr 16
allele count: 1
allele frequency: 8.4870911343846e-6
allele num: 117826
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1208A>T
  hgvsp: ENSP00000465860.1:p.Gln403Leu
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1274A>T
  hgvsp: ENSP00000262370.6:p.Gln425Leu
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1391A>T
  hgvsp: ENSP00000467414.1:p.Gln464Leu
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1211A>T
  hgvsp: ENSP00000393311.1:p.Gln404Leu
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.345A>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.*135A>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1208A>T
  hgvsp: ENSP00000468819.1:p.Gln403Leu
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.392A>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1274A>T
  hgvsp: ENSP00000382487.4:p.Gln425Leu
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.246A>T
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34257
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3751
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18625
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gln425Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: East Asian
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

16-4731694-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731694
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731694
    reference: chr 16
allele count: 3
allele frequency: 2.546948755391041e-5
allele num: 117788
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.393G>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1392G>C
  hgvsp: ENSP00000467414.1:p.Gln464His
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.346G>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1212G>C
  hgvsp: ENSP00000393311.1:p.Gln404His
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1275G>C
  hgvsp: ENSP00000382487.4:p.Gln425His
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.*136G>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1209G>C
  hgvsp: ENSP00000468819.1:p.Gln403His
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.247G>C
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1209G>C
  hgvsp: ENSP00000465860.1:p.Gln403His
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1275G>C
  hgvsp: ENSP00000262370.6:p.Gln425His
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18615
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34245
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3753
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gln425His
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

16-4731696-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731696
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731696
    reference: chr 16
allele count: 1
allele frequency: 8.49733183780293e-6
allele num: 117684
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1394C>T
  hgvsp: ENSP00000467414.1:p.Ala465Val
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1214C>T
  hgvsp: ENSP00000393311.1:p.Ala405Val
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000262370
  ensembl transcript: ENST00000262370
  gene symbol: MGRN1
  hgvsc: ENST00000262370.7:c.1277C>T
  hgvsp: ENSP00000262370.6:p.Ala426Val
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1277C>T
  hgvsp: ENSP00000382487.4:p.Ala426Val
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1211C>T
  hgvsp: ENSP00000468819.1:p.Ala404Val
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.*138C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.395C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000585676
  gene symbol: MGRN1
  hgvsc: ENST00000585676.1:n.348C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1211C>T
  hgvsp: ENSP00000465860.1:p.Ala404Val
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.249C>T
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18590
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3742
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34107
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala426Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

16-4731697-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4731697
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4731697
    reference: chr 16
allele count: 1
allele frequency: 8.494877588813945e-6
allele num: 117718
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000443810
  ensembl transcript: ENST00000536343
  gene symbol: MGRN1
  hgvsc: ENST00000536343.1:c.*139C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000382487
  ensembl transcript: ENST00000399577
  gene symbol: MGRN1
  hgvsc: ENST00000399577.5:c.1278C>T
  hgvsp: ENST00000399577.5:c.1278C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000467414
  ensembl transcript: ENST00000587747
  gene symbol: MGRN1
  hgvsc: ENST00000587747.1:c.1395C>T
  hgvsp: ENST00000587747.1:c.1395C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000592256
  gene symbol: MGRN1
  hgvsc: ENST00000592256.1:n.250C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000465860
  ensembl transcript: ENST00000586183
  gene symbol: MGRN1
  hgvsc: ENST00000586183.1:c.1212C>T
  hgvsp: ENST00000586183.1:c.1212C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102858
  ensembl transcript: ENST00000588111
  gene symbol: MGRN1
  hgvsc: ENST00000588111.1:n.396C>T
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000393311
  ensembl transcript: ENST00000415496
  gene symbol: MGRN1
  hgvsc: ENST00000415496.1:c.1215C>T
  hgvsp: ENST00000415496.1:c.1215C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102858
  ensembl protein: ENSP00000468819
  ensembl transcript: ENST00000588994
  gene symbol: MGRN1
  hgvsc: ENST00000588994.1:c.1212C>T
  hgvsp: ENST00000588994.1:c.1212C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20254
canonical: true
consequence: synonymous
filter: PASS
hgvs: p.Ala426Ala
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 3938
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 702
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20513
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4759
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1488
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 952
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2545
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2494
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4797
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4175
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1116
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4728
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1081
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1481
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4627
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11684
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8040
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6088
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8996
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10974
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.959169504413661e-5
allele num: 60494
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.087e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.18e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.12e-1

FS
type: SiteQuality
SIO_000300: 2.105e0

DP
type: SiteQuality
SIO_000300: 1.175605e6

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.1e-1

GenotypeQuality
all individuals: 3649
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4828
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 911
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30090
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 868
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 529
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 915
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2328
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1085
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3700
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2398
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1949
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 9.039956608208281e-5
allele num: 11062
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60748
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8086
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6124
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9050
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11802
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.802e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.308e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

DP
type: SiteQuality
SIO_000300: 1.21795e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.9e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 8.57e0

GenotypeQuality
all individuals: 5562
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2201
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4896
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3435
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 859
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1592
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 877
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 474
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1069
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32669
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 638
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3102
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1453
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9084
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11816
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60874
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 1.80538003249684e-4
allele num: 11078
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8096
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 756
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6128
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.33e0

VQSLOD
type: SiteQuality
SIO_000300: 3.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.9e-2

BaseQRankSum
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SIO_000300: -2.605e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.802e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.58e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.06e-1

DP
type: SiteQuality
SIO_000300: 1.237846e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

GenotypeQuality
all individuals: 154
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1954
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 48

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 1.75e1
variant carriers: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.915212582944212e-4
allele num: 8138
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9114
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 26
allele frequency: 4.24434359593849e-4
allele num: 61258
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 754
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 18
allele frequency: 2.920181700194679e-3
allele num: 6164
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12046
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11134
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.280096e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

MQ
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SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.89e0

BaseQRankSum
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SIO_000300: -2.107e0

MQRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

FS
type: SiteQuality
SIO_000300: 1.063e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

QD
type: SiteQuality
SIO_000300: 1.403e1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 9.75e1
variant carriers: 3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6164
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12046
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11134
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9114
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61258
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.68640943720816e-4
allele num: 8138
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 754
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.4e-2

MQRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.107e0

FS
type: SiteQuality
SIO_000300: 1.063e0

VQSLOD
type: SiteQuality
SIO_000300: 2.89e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

DP
type: SiteQuality
SIO_000300: 1.280096e6

QD
type: SiteQuality
SIO_000300: 1.403e1

GenotypeQuality
all individuals: 509
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
all individuals: 5135
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GenotypeQuality
all individuals: 95
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9120
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 760
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6162
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12044
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11176
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61374
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.670173721556154e-4
allele num: 8174
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.26e-1

FS
type: SiteQuality
SIO_000300: 1.678e0

VQSLOD
type: SiteQuality
SIO_000300: -1.093e0

MQ
type: SiteQuality
SIO_000300: 5.808e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.736e0

QD
type: SiteQuality
SIO_000300: 1.739e1

DP
type: SiteQuality
SIO_000300: 1.286443e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.47e-1

GenotypeQuality
all individuals: 253
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 511
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 264
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GenotypeQuality
all individuals: 228
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variant carriers: 4

GenotypeQuality
all individuals: 1636
bin: 2.75e1
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GenotypeQuality
all individuals: 39050
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GenotypeQuality
all individuals: 562
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variant carriers: 0

GenotypeQuality
all individuals: 2132
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
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GenotypeQuality
all individuals: 357
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GenotypeQuality
all individuals: 1106
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variant carriers: 0

GenotypeQuality
all individuals: 267
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variant carriers: 0

GenotypeQuality
all individuals: 5276
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 907
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variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.868549172346641e-4
allele num: 8216
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6170
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9150
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12204
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11198
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.931e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.24e0

QD
type: SiteQuality
SIO_000300: 1.502e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.299642e6

VQSLOD
type: SiteQuality
SIO_000300: 4.7e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.5e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6170
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11198
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.622902398649745e-5
allele num: 61618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12204
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9150
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8216
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

DP
type: SiteQuality
SIO_000300: 1.299642e6

MQRankSum
type: SiteQuality
SIO_000300: -1.51e-1

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.931e1

QD
type: SiteQuality
SIO_000300: 1.502e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.88e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.5e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12692
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11326
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62454
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.079913606911447e-4
allele num: 9260
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6242
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.7658e1

MQRankSum
type: SiteQuality
SIO_000300: 1.17e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.79e-1

MQ
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
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QD
type: SiteQuality
SIO_000300: 1.402e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 90
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.202356934703942e-5
allele num: 62454
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9260
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11326
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6242
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8424
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12692
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.17e0

MQ
type: SiteQuality
SIO_000300: 5.911e1

FS
type: SiteQuality
SIO_000300: 1.7658e1

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
type: SiteQuality
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DP
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SIO_000300: 1.344569e6

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 212

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
all individuals: 4148
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.535626535626536e-4
allele num: 13024
num of homozygotes: 0

African
type: Population
allele count: 200
allele frequency: 2.149613069647463e-2
allele num: 9304
num of homozygotes: 3

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.591849729385546e-4
allele num: 6282
num of homozygotes: 0

Latino
type: Population
allele count: 12
allele frequency: 1.057455058160028e-3
allele num: 11348
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.4e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.311e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.07e-1

DP
type: SiteQuality
SIO_000300: 1.364499e6

MQRankSum
type: SiteQuality
SIO_000300: 2.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.026e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.19e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.065643648763853e-4
allele num: 9384
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13590
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.175088131609871e-4
allele num: 8510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.99e-1

DP
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SIO_000300: 1.381548e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.697e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.0e-2

FS
type: SiteQuality
SIO_000300: 8.83e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.39e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

QD
type: SiteQuality
SIO_000300: 1.133e1

GenotypeQuality
all individuals: 211
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5809
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11400
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.174812030075188e-4
allele num: 8512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9384
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13700
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6356
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

VQSLOD
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SIO_000300: -3.274e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.604e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e0

DP
type: SiteQuality
SIO_000300: 1.384916e6

QD
type: SiteQuality
SIO_000300: 2.72e0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 374
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variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6400
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.210653753026634e-3
allele num: 826
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14012
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63742
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9418
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.15e0

DP
type: SiteQuality
SIO_000300: 1.393027e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.67e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e-1

MQ
type: SiteQuality
SIO_000300: 5.82e1

VQSLOD
type: SiteQuality
SIO_000300: -1.508e0

QD
type: SiteQuality
SIO_000300: 1.266e1

MQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -6.96e-1

GenotypeDepth
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 46623
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GenotypeQuality
all individuals: 324
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14590
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6466
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9430
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.118957020772254e-5
allele num: 64124
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.92e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e-1

MQ
type: SiteQuality
SIO_000300: 5.956e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.1e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 1.40655e6

QD
type: SiteQuality
SIO_000300: 1.399e1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.172058134083451e-4
allele num: 8532
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64678
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9460
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15606
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.658e0

DP
type: SiteQuality
SIO_000300: 1.427141e6

FS
type: SiteQuality
SIO_000300: 6.02e-1

MQ
type: SiteQuality
SIO_000300: 5.948e1

VQSLOD
type: SiteQuality
SIO_000300: 1.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.95e-1

QD
type: SiteQuality
SIO_000300: 1.22e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 215
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variant carriers: 1

GenotypeQuality
all individuals: 973
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.056635672020287e-4
allele num: 9464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64796
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15792
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.431706e6

ReadPosRankSum
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SIO_000300: 1.17e0

VQSLOD
type: SiteQuality
SIO_000300: 1.2e0

FS
type: SiteQuality
SIO_000300: 1.45e0

MQRankSum
type: SiteQuality
SIO_000300: 5.03e-1

BaseQRankSum
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SIO_000300: 2.8e-1

QD
type: SiteQuality
SIO_000300: 1.196e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQ
type: SiteQuality
SIO_000300: 5.971e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.63e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 262
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GenotypeQuality
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GenotypeQuality
all individuals: 78
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GenotypeQuality
all individuals: 1280
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9474
num of homozygotes: 0

South Asian
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allele count: 0
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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European (Non-Finnish)
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InbreedingCoeff
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MQRankSum
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VQSLOD
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QD
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ReadPosRankSum
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FS
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DP
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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European (Non-Finnish)
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Other
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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South Asian
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ClippingRankSum
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FS
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DP
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ReadPosRankSum
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BaseQRankSum
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MQ
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QD
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InbreedingCoeff
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VQSLOD
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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African
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Other
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European (Non-Finnish)
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allele num: 65014
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Latino
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East Asian
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MQRankSum
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ClippingRankSum
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FS
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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MQ
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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East Asian
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South Asian
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European (Finnish)
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Latino
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Other
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FS
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BaseQRankSum
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DP
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MQRankSum
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ClippingRankSum
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MQ
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QD
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 65040
num of homozygotes: 0

Latino
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South Asian
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African
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European (Finnish)
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East Asian
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Other
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VQSLOD
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QD
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MQRankSum
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InbreedingCoeff
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MQ
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BaseQRankSum
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DP
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FS
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Other
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South Asian
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East Asian
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European (Finnish)
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African
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Latino
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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FS
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DP
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MQ
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MQRankSum
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VQSLOD
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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European (Non-Finnish)
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East Asian
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Other
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African
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Latino
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ClippingRankSum
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QD
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DP
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MQ
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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FS
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MQRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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European (Finnish)
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African
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Other
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Latino
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European (Non-Finnish)
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DP
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VQSLOD
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FS
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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QD
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BaseQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.535720867375146e-5
allele num: 65116
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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DP
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ReadPosRankSum
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QD
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MQRankSum
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BaseQRankSum
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MQ
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InbreedingCoeff
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SIO_000300: 2.1e-3

FS
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SIO_000300: 5.27e-1

ClippingRankSum
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SIO_000300: -4.31e-1

VQSLOD
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SIO_000300: 1.04e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 1
allele frequency: 8.674531575294934e-5
allele num: 11528
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6576
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65166
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African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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MQ
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MQRankSum
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FS
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QD
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InbreedingCoeff
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 8.673026886383348e-5
allele num: 11530
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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South Asian
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ReadPosRankSum
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SIO_000300: 5.74e-1

FS
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SIO_000300: 5.259e0

DP
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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QD
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VQSLOD
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MQ
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SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.534260026389273e-5
allele num: 65178
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.74e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

FS
type: SiteQuality
SIO_000300: 5.259e0

QD
type: SiteQuality
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ClippingRankSum
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DP
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SIO_000300: 1.447444e6

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

MQRankSum
type: SiteQuality
SIO_000300: 4.3e-1

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.070875813782091e-5
allele num: 65128
num of homozygotes: 0

Latino
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allele frequency: 8.674531575294934e-5
allele num: 11528
num of homozygotes: 0

Other
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ReadPosRankSum
type: SiteQuality
SIO_000300: 8.100000000000001e-1

BaseQRankSum
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MQ
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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FS
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DP
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 3.049524274213223e-4
allele num: 16396
num of homozygotes: 0

Other
type: Population
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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European (Finnish)
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allele frequency: 0.0e0
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African
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East Asian
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VQSLOD
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InbreedingCoeff
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FS
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QD
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MQ
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BaseQRankSum
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DP
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
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num of homozygotes: 0

Other
type: Population
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Latino
type: Population
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
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South Asian
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African
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European (Finnish)
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QD
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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DP
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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FS
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 9.216873022212664e-5
allele num: 65098
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East Asian
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African
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allele frequency: 2.111040743086342e-4
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Latino
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South Asian
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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MQ
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ClippingRankSum
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FS
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DP
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VQSLOD
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MQRankSum
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SIO_000300: 3.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.221e0

QD
type: SiteQuality
SIO_000300: 1.058e1

GenotypeQuality
all individuals: 335
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48529
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65090
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.093845216331505e-5
allele num: 16410
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.62e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

FS
type: SiteQuality
SIO_000300: 2.359e0

QD
type: SiteQuality
SIO_000300: 1.222e1

DP
type: SiteQuality
SIO_000300: 1.444688e6

VQSLOD
type: SiteQuality
SIO_000300: 1.62e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.721e0

MQ
type: SiteQuality
SIO_000300: 5.934e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.25e-1

GenotypeQuality
all individuals: 58
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65090
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16410
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.056859015007398e-4
allele num: 9462
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.222e1

MQ
type: SiteQuality
SIO_000300: 5.934e1

DP
type: SiteQuality
SIO_000300: 1.444688e6

VQSLOD
type: SiteQuality
SIO_000300: 1.62e0

FS
type: SiteQuality
SIO_000300: 2.359e0

MQRankSum
type: SiteQuality
SIO_000300: 5.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.721e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 7.25e-1

GenotypeQuality
all individuals: 235
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 6243
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9466
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16408
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.229142980057155e-4
allele num: 65086
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.676036786395974e-5
allele num: 11526
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.444929e6

FS
type: SiteQuality
SIO_000300: 1.097e0

MQ
type: SiteQuality
SIO_000300: 5.939e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.47e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.45e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -6.04e-1

QD
type: SiteQuality
SIO_000300: 1.153e1

GenotypeQuality
all individuals: 194
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1281
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9456
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.093102607847916e-5
allele num: 16412
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65072
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.4e0

VQSLOD
type: SiteQuality
SIO_000300: -1.218e-1

FS
type: SiteQuality
SIO_000300: 8.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.91e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.292e0

QD
type: SiteQuality
SIO_000300: 1.057e1

DP
type: SiteQuality
SIO_000300: 1.444067e6

GenotypeQuality
all individuals: 1359
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 80
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GenotypeQuality
all individuals: 138
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65078
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.674531575294934e-5
allele num: 11528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16426
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.82e0

MQ
type: SiteQuality
SIO_000300: 5.925e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.35e0

VQSLOD
type: SiteQuality
SIO_000300: -5.2e-2

QD
type: SiteQuality
SIO_000300: 1.073e1

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-3

DP
type: SiteQuality
SIO_000300: 1.44429e6

FS
type: SiteQuality
SIO_000300: 1.669e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.807e0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.537042729787888e-5
allele num: 65060
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9440
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21758188238159e-4
allele num: 16426
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

VQSLOD
type: SiteQuality
SIO_000300: 7.04e-1

DP
type: SiteQuality
SIO_000300: 1.444226e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.73e-1

QD
type: SiteQuality
SIO_000300: 1.001e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.17e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.51e-1

FS
type: SiteQuality
SIO_000300: 1.217e0

GenotypeQuality
all individuals: 48482
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 331
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variant carriers: 0

GenotypeQuality
all individuals: 1271
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9412
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.538508877196221e-5
allele num: 64998
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

FS
type: SiteQuality
SIO_000300: 2.137e0

QD
type: SiteQuality
SIO_000300: 1.226e1

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.443408e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.687e0

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.9e-1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 70
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GenotypeQuality
all individuals: 126
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9420
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65012
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.133786848072562e-3
allele num: 882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.409e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

MQ
type: SiteQuality
SIO_000300: 5.955e1

VQSLOD
type: SiteQuality
SIO_000300: -1.254e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.179999999999999e-1

QD
type: SiteQuality
SIO_000300: 7.56e0

MQRankSum
type: SiteQuality
SIO_000300: 4.24e-1

DP
type: SiteQuality
SIO_000300: 1.444061e6

FS
type: SiteQuality
SIO_000300: 9.494999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.76e-1

GenotypeQuality
all individuals: 86
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1444
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 979
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1275
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.690178104524901e-5
allele num: 65018
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9430
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.444633e6

QD
type: SiteQuality
SIO_000300: 1.206e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 5.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.26e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.19e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.81e0

GenotypeQuality
all individuals: 1463
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6257
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 972
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1264
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9354
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.070908207867897e-5
allele num: 16472
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64944
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.14e0

MQRankSum
type: SiteQuality
SIO_000300: 8.080000000000001e-1

FS
type: SiteQuality
SIO_000300: 9.57e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.36e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.118e0

VQSLOD
type: SiteQuality
SIO_000300: -2.221e0

QD
type: SiteQuality
SIO_000300: 8.83e0

DP
type: SiteQuality
SIO_000300: 1.441858e6

MQ
type: SiteQuality
SIO_000300: 5.901e1

GenotypeQuality
all individuals: 206
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 21
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.25e1
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GenotypeQuality
all individuals: 211
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 976
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64950
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.516070345664039e-4
allele num: 6596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.442094e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

FS
type: SiteQuality
SIO_000300: 1.182e0

VQSLOD
type: SiteQuality
SIO_000300: 3.98e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -9.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.19e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.095e0

QD
type: SiteQuality
SIO_000300: 1.471e1

GenotypeQuality
all individuals: 228
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1546
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
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variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 980
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1264
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6248
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.13857998289136e-4
allele num: 9352
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64950
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.493e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.98e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.8e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.738e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 4.731e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.33e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.66e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

DP
type: SiteQuality
SIO_000300: 1.441883e6

GenotypeQuality
all individuals: 48715
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1541
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 83
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 973
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6245
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1265
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.06951871657754e-4
allele num: 9350
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64924
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.93e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.81e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.79e-1

DP
type: SiteQuality
SIO_000300: 1.441929e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.72e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

QD
type: SiteQuality
SIO_000300: 1.395e1

GenotypeQuality
all individuals: 1265
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6245
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 973
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41
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variant carriers: 0

GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
all individuals: 68
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variant carriers: 0

GenotypeQuality
all individuals: 46
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variant carriers: 0

GenotypeQuality
all individuals: 35
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variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
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GenotypeQuality
all individuals: 92
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 73
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.080524921446614e-5
allele num: 64924
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9350
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.93e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.441929e6

MQRankSum
type: SiteQuality
SIO_000300: 7.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.72e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

QD
type: SiteQuality
SIO_000300: 1.395e1

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1265
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GenotypeQuality
all individuals: 39
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GenotypeQuality
all individuals: 6246
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GenotypeQuality
all individuals: 37
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 81
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 38
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variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64930
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9342
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.133786848072562e-3
allele num: 882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.66e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.21e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.600000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.441531e6

VQSLOD
type: SiteQuality
SIO_000300: -3.522e-1

MQ
type: SiteQuality
SIO_000300: 5.911e1

QD
type: SiteQuality
SIO_000300: 8.84e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 973
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
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GenotypeQuality
all individuals: 37
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GenotypeQuality
all individuals: 48701
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1265
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variant carriers: 0

GenotypeQuality
all individuals: 68
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GenotypeQuality
all individuals: 81
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GenotypeQuality
all individuals: 81
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 51
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9330
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.540689612670631e-5
allele num: 64906
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.320000000000001e-1

InbreedingCoeff
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SIO_000300: 9.0e-4

BaseQRankSum
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QD
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SIO_000300: 1.071e1

VQSLOD
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SIO_000300: 1.51e0

ReadPosRankSum
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SIO_000300: 8.169999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.68e-1

MQ
type: SiteQuality
SIO_000300: 5.935e1

MQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

DP
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SIO_000300: 1.441238e6

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64882
num of homozygotes: 0

Latino
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allele count: 11
allele frequency: 9.558567952728537e-4
allele num: 11508
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
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QD
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FS
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InbreedingCoeff
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VQSLOD
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MQRankSum
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BaseQRankSum
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DP
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SIO_000300: 1.441637e6

ClippingRankSum
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SIO_000300: -5.93e-1

MQ
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SIO_000300: 5.96e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9326
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.542257865515114e-5
allele num: 64840
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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SIO_000300: -2.289e0

FS
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InbreedingCoeff
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SIO_000300: 2.2e-3

QD
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SIO_000300: 1.037e1

BaseQRankSum
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SIO_000300: -5.253e0

ClippingRankSum
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SIO_000300: 1.49e0

MQRankSum
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SIO_000300: 1.64e0

MQ
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SIO_000300: 5.956e1

ReadPosRankSum
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SIO_000300: -2.005e0

DP
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SIO_000300: 1.440206e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.175088131609871e-4
allele num: 8510
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9308
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64826
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.149999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.439823e6

QD
type: SiteQuality
SIO_000300: 1.345e1

VQSLOD
type: SiteQuality
SIO_000300: 1.89e0

MQRankSum
type: SiteQuality
SIO_000300: -2.88e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9300
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.542876539019348e-5
allele num: 64814
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.857e0

VQSLOD
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ReadPosRankSum
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SIO_000300: 1.08e0

MQ
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SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.32e-1

InbreedingCoeff
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SIO_000300: 1.6e-3

BaseQRankSum
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SIO_000300: -3.8e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.99e-1

DP
type: SiteQuality
SIO_000300: 1.439129e6

QD
type: SiteQuality
SIO_000300: 6.1e-1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64768
num of homozygotes: 0

South Asian
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allele frequency: 6.071645415907711e-5
allele num: 16470
num of homozygotes: 0

DP
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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VQSLOD
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MQ
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QD
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.543924656476764e-5
allele num: 64770
num of homozygotes: 0

European (Finnish)
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East Asian
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allele frequency: 3.525264394829612e-4
allele num: 8510
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South Asian
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African
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allele frequency: 1.077354018530489e-4
allele num: 9282
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Latino
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Other
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QD
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SIO_000300: 1.057e1

FS
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InbreedingCoeff
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DP
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MQ
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VQSLOD
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

Other
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Latino
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African
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allele frequency: 0.0e0
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European (Finnish)
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 7
allele frequency: 1.080914144533663e-4
allele num: 64760
num of homozygotes: 0

DP
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MQ
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BaseQRankSum
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FS
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ClippingRankSum
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QD
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9278
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.54397233201581e-5
allele num: 64768
num of homozygotes: 0

Latino
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allele count: 4
allele frequency: 3.478260869565218e-4
allele num: 11500
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.15e-1

MQ
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SIO_000300: 5.933e1

ClippingRankSum
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SIO_000300: -6.39e-1

FS
type: SiteQuality
SIO_000300: 5.32e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.93e-1

DP
type: SiteQuality
SIO_000300: 1.43839e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

QD
type: SiteQuality
SIO_000300: 1.197e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.35e-1

GenotypeQuality
all individuals: 95
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9268
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.545547278291243e-5
allele num: 64702
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

VQSLOD
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MQ
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SIO_000300: 5.913e1

BaseQRankSum
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SIO_000300: 7.31e-1

FS
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SIO_000300: 0.0e0

MQRankSum
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SIO_000300: 3.01e-1

ReadPosRankSum
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DP
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ClippingRankSum
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SIO_000300: -4.42e-1

QD
type: SiteQuality
SIO_000300: 1.118e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.900000000000001e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.545547278291243e-5
allele num: 64702
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9268
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Latino
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allele count: 5
allele frequency: 4.348582362149939e-4
allele num: 11498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.118e1

BaseQRankSum
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SIO_000300: 7.31e-1

MQ
type: SiteQuality
SIO_000300: 5.913e1

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

FS
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SIO_000300: 0.0e0

DP
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ClippingRankSum
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SIO_000300: -4.42e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.37e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.900000000000001e-3

GenotypeQuality
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variant carriers: 7

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6216
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.739432944859976e-4
allele num: 11498
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.070908207867897e-5
allele num: 16472
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.182380216383307e-5
allele num: 64700
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9268
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.85e0

QD
type: SiteQuality
SIO_000300: 1.216e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.52e-1

MQ
type: SiteQuality
SIO_000300: 5.944e1

FS
type: SiteQuality
SIO_000300: 2.493e0

ClippingRankSum
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SIO_000300: 4.0e-3

InbreedingCoeff
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SIO_000300: 3.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 9.45e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.68e-1

DP
type: SiteQuality
SIO_000300: 1.437928e6

GenotypeQuality
all individuals: 76
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variant carriers: 0

GenotypeQuality
all individuals: 207
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.174812030075188e-4
allele num: 8512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64700
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9268
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.944e1

VQSLOD
type: SiteQuality
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ClippingRankSum
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MQRankSum
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FS
type: SiteQuality
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QD
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BaseQRankSum
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SIO_000300: 9.45e-1

DP
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

South Asian
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allele frequency: 6.074596039363382e-5
allele num: 16462
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64672
num of homozygotes: 0

Other
type: Population
allele count: 0
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InbreedingCoeff
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SIO_000300: 4.6e-3

BaseQRankSum
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DP
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QD
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VQSLOD
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MQ
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FS
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

Other
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 6.074596039363382e-5
allele num: 16462
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.546264225630876e-5
allele num: 64672
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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MQRankSum
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InbreedingCoeff
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FS
type: SiteQuality
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ClippingRankSum
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ReadPosRankSum
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MQ
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VQSLOD
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BaseQRankSum
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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South Asian
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East Asian
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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QD
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
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FS
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DP
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MQ
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6196
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 947
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9254
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.175640724194686e-4
allele num: 8506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.15e0

DP
type: SiteQuality
SIO_000300: 1.435686e6

VQSLOD
type: SiteQuality
SIO_000300: -1.647e-1

FS
type: SiteQuality
SIO_000300: 7.518e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.698e0

MQRankSum
type: SiteQuality
SIO_000300: -2.93e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQ
type: SiteQuality
SIO_000300: 5.971e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.87e0

GenotypeQuality
all individuals: 315
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.70170553428472e-5
allele num: 11492
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9258
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.06e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.294e0

VQSLOD
type: SiteQuality
SIO_000300: -3.22e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

DP
type: SiteQuality
SIO_000300: 1.435433e6

MQRankSum
type: SiteQuality
SIO_000300: -1.406e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.71e-1

MQ
type: SiteQuality
SIO_000300: 5.892e1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.642381851381882e-5
allele num: 64622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9252
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.72e-1

DP
type: SiteQuality
SIO_000300: 1.435275e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

MQ
type: SiteQuality
SIO_000300: 5.97e1

MQRankSum
type: SiteQuality
SIO_000300: -7.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 1.3791e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.589e0

QD
type: SiteQuality
SIO_000300: 1.262e1

VQSLOD
type: SiteQuality
SIO_000300: -1.224e0

GenotypeQuality
all individuals: 272
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2046
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6161
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 933
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 78
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9226
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.076072426783327e-5
allele num: 16458
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.433142e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.27e-1

FS
type: SiteQuality
SIO_000300: 2.154e0

MQ
type: SiteQuality
SIO_000300: 5.864e1

VQSLOD
type: SiteQuality
SIO_000300: -1.298e0

QD
type: SiteQuality
SIO_000300: 9.59e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -4.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.293e0