19-55043987-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55043987
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55043987
    reference: chr 19
allele count: 1
allele frequency: 8.280064915708939e-6
allele num: 120772
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.79C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.-28C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.-28C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.79C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.-28C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.-28C>T
  variant of: http://identifiers.org/hgnc/25043
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2811
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7385
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4507
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7425
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4472
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5716
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3165
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4566
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6122
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6906
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 981
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1085
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 904
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1472
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ

19-55043988-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55043988
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55043988
    reference: chr 19
allele count: 2
allele frequency: 1.656012983141788e-5
allele num: 120772
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.-27T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.-27T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.80T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.-27T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.80T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.-27T>C
  variant of: http://identifiers.org/hgnc/25043
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2811
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5716
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7385
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4567
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4507
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6906
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6122
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4472
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7426
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3165
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1086
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 904
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum

19-55043991-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55043991
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55043991
    reference: chr 19
allele count: 28
allele frequency: 2.318418176398503e-4
allele num: 120772
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.-24G>A
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.-24G>A
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.-24G>A
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.-24G>A
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.83G>A
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.83G>A
  variant of: http://identifiers.org/hgnc/25043
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4473
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4511
  bin: 9.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7385
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2810
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7425
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4568
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2214
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3164
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5716
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6905
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6120
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 982
  bin: 8.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 904
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1087
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

19-55043991-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55043991
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55043991
    reference: chr 19
allele count: 10
allele frequency: 8.280064915708939e-5
allele num: 120772
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.-24G>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.-24G>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.-24G>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.-24G>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.83G>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.83G>T
  variant of: http://identifiers.org/hgnc/25043
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5716
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4568
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7385
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6120
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4511
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3164
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2810
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6905
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7425
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4473
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 904
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1474
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 982
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

19-55044001-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044001
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044001
    reference: chr 19
allele count: 200
allele frequency: 1.656012983141788e-3
allele num: 120772
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.-14A>G
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.93A>G
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.-14A>G
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.-14A>G
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.-14A>G
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.93A>G
  variant of: http://identifiers.org/hgnc/25043
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7429
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6907
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3160
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2813
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4524
  bin: 9.75e1
  variant carriers: 186
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4474
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4569
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7387
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5716
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6118
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2096
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1090
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 982
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52534
  bin: 9.75e1
  variant carriers: 200
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

19-55044010-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044010
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044010
    reference: chr 19
allele count: 55
allele frequency: 4.554035703639917e-4
allele num: 120772
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.102G>A
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.-5G>A
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.-5G>A
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.-5G>A
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.-5G>A
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.102G>A
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.-5G>A
  variant of: http://identifiers.org/hgnc/25043
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4489
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2208
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6927
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7450
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7409
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5729
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6137
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3170
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2825
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4588
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4362
  bin: 9.75e1
  variant carriers: 54
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1093
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 984
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

19-55044015-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044015
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044015
    reference: chr 19
allele count: 1
allele frequency: 8.280064915708939e-6
allele num: 120772
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: start_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.1A>G
  hgvsp: ENSP00000395115.1:p.Met1?
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: start_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.1A>G
  hgvsp: ENSP00000401224.1:p.Met1?
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: true
  consequence: start_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.1A>G
  hgvsp: ENSP00000221567.6:p.Met1?
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.107A>G
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.1A>G
  hgvsp: ENSP00000335388.3:p.Met1?
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.107A>G
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: start_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.1A>G
  hgvsp: ENSP00000396692.1:p.Met1?
  variant of: http://identifiers.org/hgnc/25043
canonical: true
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4491
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7465
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4308
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7418
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2830
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6934
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2208
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4592
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5731
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1488
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1094
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 904
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

19-55044018-GC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044018
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044017
    reference: chr 19
allele count: 1
allele frequency: 8.280064915708939e-6
allele num: 120772
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.9delC
  hgvsp: ENSP00000221567.6:p.Lys4AsnfsTer12
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.9delC
  hgvsp: ENSP00000335388.3:p.Lys4AsnfsTer12
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.115delC
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.9delC
  hgvsp: ENSP00000396692.1:p.Lys4AsnfsTer12
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.9delC
  hgvsp: ENSP00000401224.1:p.Lys4AsnfsTer12
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.115delC
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.9delC
  hgvsp: ENSP00000395115.1:p.Lys4AsnfsTer12
  variant of: http://identifiers.org/hgnc/25043
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7418
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2831
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7465
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4592
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6935
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4491
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5731
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4307
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2208
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52497
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 984
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1488
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Lys4AsnfsTer12
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: Latino
reference allele: GC
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

19-55044024-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044024
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044024
    reference: chr 19
allele count: 2
allele frequency: 1.656012983141788e-5
allele num: 120772
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.10A>G
  hgvsp: ENSP00000395115.1:p.Lys4Glu
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.10A>G
  hgvsp: ENSP00000396692.1:p.Lys4Glu
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.10A>G
  hgvsp: ENSP00000335388.3:p.Lys4Glu
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.116A>G
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.116A>G
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.10A>G
  hgvsp: ENSP00000401224.1:p.Lys4Glu
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.10A>G
  hgvsp: ENSP00000221567.6:p.Lys4Glu
  variant of: http://identifiers.org/hgnc/25043
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4592
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2831
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6935
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7466
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4306
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5731
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7418
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2209
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4490
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1094
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2106
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Lys4Glu
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: VQSLOD

19-55044035-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044035
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044035
    reference: chr 19
allele count: 15
allele frequency: 1.242030305539455e-4
allele num: 120770
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.21C>T
  hgvsp: ENST00000447145.1:c.21C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.21C>T
  hgvsp: ENST00000221567.6:c.21C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.127C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.127C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.21C>T
  hgvsp: ENST00000335056.3:c.21C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.21C>T
  hgvsp: ENST00000434659.1:c.21C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.21C>T
  hgvsp: ENST00000446586.1:c.21C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25043
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5731
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7466
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6935
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2209
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2831
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4490
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7418
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4306
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 6144
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1487
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52496
  bin: 9.75e1
  variant carriers: 15
hgvs: p.Thr7Thr
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

19-55044036-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044036
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044036
    reference: chr 19
allele count: 3
allele frequency: 2.484019474712682e-5
allele num: 120772
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.22G>A
  hgvsp: ENSP00000335388.3:p.Val8Ile
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.22G>A
  hgvsp: ENSP00000221567.6:p.Val8Ile
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.22G>A
  hgvsp: ENSP00000395115.1:p.Val8Ile
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.128G>A
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.22G>A
  hgvsp: ENSP00000401224.1:p.Val8Ile
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.22G>A
  hgvsp: ENSP00000396692.1:p.Val8Ile
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.128G>A
  variant of: http://identifiers.org/hgnc/25043
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6146
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4595
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7468
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4294
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2209
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7418
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2831
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5732
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4491
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6935
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 901
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val8Ile
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
reference allele: G
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

19-55044044-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044044
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044044
    reference: chr 19
allele count: 1
allele frequency: 8.280202036929701e-6
allele num: 120770
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.30T>A
  hgvsp: ENSP00000396692.1:p.Cys10Ter
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.136T>A
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.30T>A
  hgvsp: ENSP00000395115.1:p.Cys10Ter
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.30T>A
  hgvsp: ENSP00000335388.3:p.Cys10Ter
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: true
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.30T>A
  hgvsp: ENSP00000221567.6:p.Cys10Ter
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.30T>A
  hgvsp: ENSP00000401224.1:p.Cys10Ter
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.136T>A
  variant of: http://identifiers.org/hgnc/25043
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5732
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2832
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6146
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4491
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7469
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4291
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6937
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2209
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7418
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4595
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2107
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1094
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Cys10Ter
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum

19-55044054-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044054
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044054
    reference: chr 19
allele count: 1
allele frequency: 8.280202036929701e-6
allele num: 120770
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.34+6T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.34+6T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.34+6T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.34+6T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.146T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.34+6T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.146T>C
  variant of: http://identifiers.org/hgnc/25043
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4595
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6937
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2832
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5732
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7468
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4290
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4492
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7418
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2209
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 904
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1488
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1094
  bin: 7.75e1
  variant carriers: 0
hgvs: c.34+6T>C
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

19-55044064-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044064
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044064
    reference: chr 19
allele count: 297
allele frequency: 2.459220004968121e-3
allele num: 120770
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.34+16G>A
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.34+16G>A
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.156G>A
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.34+16G>A
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.34+16G>A
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.156G>A
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.34+16G>A
  variant of: http://identifiers.org/hgnc/25043
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4595
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6933
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2826
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7471
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4494
  bin: 7.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 5728
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4294
  bin: 9.75e1
  variant carriers: 202
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7416
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3173
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 9.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 8.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 8.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 900
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52495
  bin: 9.75e1
  variant carriers: 295
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 2
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-55044067-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044067
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044067
    reference: chr 19
allele count: 1
allele frequency: 8.280202036929701e-6
allele num: 120770
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.34+19A>G
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.34+19A>G
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.34+19A>G
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.34+19A>G
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.159A>G
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.159A>G
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.34+19A>G
  variant of: http://identifiers.org/hgnc/25043
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4122
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7499
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6961
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6172
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5748
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4613
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2209
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7454
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4503
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52451
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 989
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: African
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD

19-55044076-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044076
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044076
    reference: chr 19
allele count: 27
allele frequency: 2.235691573926868e-4
allele num: 120768
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.34+28C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.34+28C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.34+28C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.168C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.168C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.34+28C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.34+28C>T
  variant of: http://identifiers.org/hgnc/25043
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6963
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6169
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3174
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4502
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7498
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7453
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2838
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5747
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4125
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 4615
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

19-55044081-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044081
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044081
    reference: chr 19
allele count: 1
allele frequency: 8.280339162692104e-6
allele num: 120768
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.34+33G>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.173G>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.173G>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.34+33G>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.34+33G>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.34+33G>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.34+33G>T
  variant of: http://identifiers.org/hgnc/25043
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7457
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7500
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6964
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4500
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6173
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4613
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5748
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2839
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4112
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1491
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

19-55044084-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044084
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044084
    reference: chr 19
allele count: 8
allele frequency: 6.624381034397098e-5
allele num: 120766
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.34+36A>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.34+36A>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.34+36A>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.34+36A>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.176A>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.176A>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.34+36A>T
  variant of: http://identifiers.org/hgnc/25043
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4111
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4615
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2832
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6172
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4499
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7459
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6965
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7495
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5749
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3177
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 878
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

19-55044094-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044094
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044094
    reference: chr 19
allele count: 8
allele frequency: 6.625039336171058e-5
allele num: 120754
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.34+46C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.34+46C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.186C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.186C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.34+46C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.34+46C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.34+46C>T
  variant of: http://identifiers.org/hgnc/25043
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4603
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6168
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2209
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2811
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7496
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7458
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4501
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5748
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6962
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4110
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3176
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 752
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 983
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

19-55044096-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044096
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044096
    reference: chr 19
allele count: 3
allele frequency: 2.484389751064147e-5
allele num: 120754
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.188C>G
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.34+48C>G
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.34+48C>G
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.188C>G
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.34+48C>G
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.34+48C>G
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.34+48C>G
  variant of: http://identifiers.org/hgnc/25043
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7494
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6165
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4501
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2800
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4593
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7457
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5749
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2208
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6963
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4109
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3177
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 984
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2111
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1482
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

19-55044097-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044097
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044097
    reference: chr 19
allele count: 1
allele frequency: 8.281299170213822e-6
allele num: 120754
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.34+49T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.189T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.34+49T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.189T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.34+49T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.34+49T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.34+49T>C
  variant of: http://identifiers.org/hgnc/25043
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4501
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7458
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6962
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7493
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2800
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5749
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6163
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2208
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4109
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 984
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 672
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD

19-55044224-ATT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044224
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044222
    reference: chr 19
allele count: 2
allele frequency: 3.369045212586753e-5
allele num: 59364
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.35-34_35-33delTT
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.320_321delTT
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.35-34_35-33delTT
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.320_321delTT
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.35-34_35-33delTT
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.35-34_35-33delTT
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.35-34_35-33delTT
  variant of: http://identifiers.org/hgnc/25043
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 6841
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3308
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6028
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3520
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7778
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2484
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5086
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8134
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3738
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1218
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1663
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6603
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2659
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15775
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1435
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1372
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
reference allele: ATT
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum

19-55044225-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044225
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044225
    reference: chr 19
allele count: 3
allele frequency: 6.010096962897668e-5
allele num: 49916
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.35-37T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.35-37T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.35-37T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.317T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.35-37T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.317T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.35-37T>C
  variant of: http://identifiers.org/hgnc/25043
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4002
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2512
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6063
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1890
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2828
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4590
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5545
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6488
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1715
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6101
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1054
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1826
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

19-55044226-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044226
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044226
    reference: chr 19
allele count: 1
allele frequency: 2.000080003200128e-5
allele num: 49998
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.35-36T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.35-36T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.318T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.35-36T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.318T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.35-36T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.35-36T>C
  variant of: http://identifiers.org/hgnc/25043
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4571
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6029
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4049
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2824
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5560
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6524
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2505
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9797
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 760
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6528
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1569
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2143
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1678
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1609
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD

19-55044228-TTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044228
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044226
    reference: chr 19
allele count: 91553
allele frequency: 7.628272425802797e-1
allele num: 120018
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.327_328delTC
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.35-27_35-26delTC
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.35-27_35-26delTC
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.327_328delTC
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.35-27_35-26delTC
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.35-27_35-26delTC
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.35-27_35-26delTC
  variant of: http://identifiers.org/hgnc/25043
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2678
  bin: 6.25e1
  variant carriers: 2521
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.5e0
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 1.25e1
  variant carriers: 482
genotype depth: GenotypeDepth
  all individuals: 5155
  bin: 2.75e1
  variant carriers: 4930
genotype depth: GenotypeDepth
  all individuals: 6855
  bin: 4.75e1
  variant carriers: 6380
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 9.25e1
  variant carriers: 498
genotype depth: GenotypeDepth
  all individuals: 1945
  bin: 6.75e1
  variant carriers: 1826
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 7.75e1
  variant carriers: 1043
genotype depth: GenotypeDepth
  all individuals: 7027
  bin: 3.25e1
  variant carriers: 6635
genotype depth: GenotypeDepth
  all individuals: 8172
  bin: 3.75e1
  variant carriers: 7652
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 9.75e1
  variant carriers: 1891
genotype depth: GenotypeDepth
  all individuals: 2919
  bin: 2.25e1
  variant carriers: 2823
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 1.75e1
  variant carriers: 1409
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 8.25e1
  variant carriers: 747
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 7.25e1
  variant carriers: 1277
genotype depth: GenotypeDepth
  all individuals: 3867
  bin: 5.75e1
  variant carriers: 3634
genotype depth: GenotypeDepth
  all individuals: 7996
  bin: 4.25e1
  variant carriers: 7434
genotype depth: GenotypeDepth
  all individuals: 5262
  bin: 5.25e1
  variant carriers: 4900
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 8.75e1
  variant carriers: 602
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.5e0
  variant carriers: 54
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 3.25e1
  variant carriers: 165
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 3.75e1
  variant carriers: 205
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 5.75e1
  variant carriers: 507
genotype quality: GenotypeQuality
  all individuals: 831
  bin: 6.25e1
  variant carriers: 606
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 4.75e1
  variant carriers: 305
genotype quality: GenotypeQuality
  all individuals: 918
  bin: 7.25e1
  variant carriers: 809
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.25e1
  variant carriers: 83
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 5.25e1
  variant carriers: 434
num of homozygotes: 35099
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: TTC
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

19-55044235-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044235
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044235
    reference: chr 19
allele count: 411
allele frequency: 3.619168383790352e-3
allele num: 113562
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.327T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.35-27T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.35-27T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.35-27T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.35-27T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.327T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.35-27T>C
  variant of: http://identifiers.org/hgnc/25043
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6854
  bin: 3.75e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 5374
  bin: 3.25e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 1.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 7470
  bin: 4.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1977
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6523
  bin: 5.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 2.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3265
  bin: 2.75e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5151
  bin: 5.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 7826
  bin: 4.25e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3857
  bin: 6.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 2235
  bin: 8.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 3132
  bin: 7.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 3460
  bin: 6.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 3133
  bin: 9.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 3.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 3928
  bin: 6.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 1.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2225
  bin: 7.25e1
  variant carriers: 2
num of homozygotes: 8
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

19-55044236-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044236
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044236
    reference: chr 19
allele count: 426
allele frequency: 3.750660327522451e-3
allele num: 113580
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.35-26C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.35-26C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.35-26C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.35-26C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.35-26C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.328C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.328C>T
  variant of: http://identifiers.org/hgnc/25043
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2690
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 7864
  bin: 4.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 1.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 6871
  bin: 3.75e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1976
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 2.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 5385
  bin: 3.25e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 7481
  bin: 4.75e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 2.75e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6548
  bin: 5.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3860
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2446
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5166
  bin: 5.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 5.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 4.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 3.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3088
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3119
  bin: 9.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3138
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3196
  bin: 8.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 2.25e1
  variant carriers: 2
num of homozygotes: 9
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: African
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum

19-55044241-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044241
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044242
    reference: chr 19
allele count: 7330
allele frequency: 1.106648952231415e-1
allele num: 66236
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.347dupT
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.35-7dupT
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.35-7dupT
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.347dupT
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.35-7dupT
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.35-7dupT
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.35-7dupT
  variant of: http://identifiers.org/hgnc/25043
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 1.75e1
  variant carriers: 1356
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 8.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 4966
  bin: 2.75e1
  variant carriers: 1283
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 7.25e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.5e0
  variant carriers: 182
genotype depth: GenotypeDepth
  all individuals: 4651
  bin: 5.75e1
  variant carriers: 226
genotype depth: GenotypeDepth
  all individuals: 3899
  bin: 2.25e1
  variant carriers: 1513
genotype depth: GenotypeDepth
  all individuals: 6235
  bin: 3.75e1
  variant carriers: 610
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 7.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 5479
  bin: 5.25e1
  variant carriers: 251
genotype depth: GenotypeDepth
  all individuals: 6595
  bin: 4.25e1
  variant carriers: 454
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 1.25e1
  variant carriers: 780
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 9.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 6114
  bin: 4.75e1
  variant carriers: 297
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 8.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 2588
  bin: 6.75e1
  variant carriers: 127
genotype depth: GenotypeDepth
  all individuals: 5812
  bin: 3.25e1
  variant carriers: 895
genotype depth: GenotypeDepth
  all individuals: 3501
  bin: 6.25e1
  variant carriers: 160
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 9.25e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 9.25e1
  variant carriers: 195
genotype quality: GenotypeQuality
  all individuals: 1705
  bin: 6.25e1
  variant carriers: 323
genotype quality: GenotypeQuality
  all individuals: 1477
  bin: 5.25e1
  variant carriers: 300
genotype quality: GenotypeQuality
  all individuals: 2484
  bin: 1.25e1
  variant carriers: 286
genotype quality: GenotypeQuality
  all individuals: 19550
  bin: 2.5e0
  variant carriers: 252
genotype quality: GenotypeQuality
  all individuals: 1267
  bin: 7.25e1
  variant carriers: 232
genotype quality: GenotypeQuality
  all individuals: 957
  bin: 8.75e1
  variant carriers: 216
genotype quality: GenotypeQuality
  all individuals: 2127
  bin: 3.75e1
  variant carriers: 333
genotype quality: GenotypeQuality
  all individuals: 2554
  bin: 7.5e0
  variant carriers: 295
num of homozygotes: 214
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum

19-55044241-C-CTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044241
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044243
    reference: chr 19
allele count: 2883
allele frequency: 4.352617911709644e-2
allele num: 66236
alternate allele: CTT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.346_347dupTT
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.346_347dupTT
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.35-8_35-7dupTT
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.35-8_35-7dupTT
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.35-8_35-7dupTT
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.35-8_35-7dupTT
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.35-8_35-7dupTT
  variant of: http://identifiers.org/hgnc/25043
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6595
  bin: 4.25e1
  variant carriers: 122
genotype depth: GenotypeDepth
  all individuals: 5479
  bin: 5.25e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3899
  bin: 2.25e1
  variant carriers: 747
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6235
  bin: 3.75e1
  variant carriers: 184
genotype depth: GenotypeDepth
  all individuals: 4966
  bin: 2.75e1
  variant carriers: 587
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 1.75e1
  variant carriers: 692
genotype depth: GenotypeDepth
  all individuals: 4651
  bin: 5.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 1.25e1
  variant carriers: 342
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.5e0
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5812
  bin: 3.25e1
  variant carriers: 338
genotype depth: GenotypeDepth
  all individuals: 2588
  bin: 6.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3501
  bin: 6.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 6114
  bin: 4.75e1
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1265
  bin: 7.75e1
  variant carriers: 76
genotype quality: GenotypeQuality
  all individuals: 957
  bin: 8.75e1
  variant carriers: 72
genotype quality: GenotypeQuality
  all individuals: 2536
  bin: 2.75e1
  variant carriers: 129
genotype quality: GenotypeQuality
  all individuals: 1327
  bin: 5.75e1
  variant carriers: 103
genotype quality: GenotypeQuality
  all individuals: 19550
  bin: 2.5e0
  variant carriers: 151
genotype quality: GenotypeQuality
  all individuals: 1477
  bin: 5.25e1
  variant carriers: 101
genotype quality: GenotypeQuality
  all individuals: 2371
  bin: 1.75e1
  variant carriers: 109
genotype quality: GenotypeQuality
  all individuals: 2484
  bin: 1.25e1
  variant carriers: 99
genotype quality: GenotypeQuality
  all individuals: 8463
  bin: 9.75e1
  variant carriers: 1395
num of homozygotes: 105
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP

19-55044241-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044241
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044240
    reference: chr 19
allele count: 7815
allele frequency: 1.179871972945226e-1
allele num: 66236
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.35-7delT
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.35-7delT
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.35-7delT
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.35-7delT
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.347delT
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.347delT
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.35-7delT
  variant of: http://identifiers.org/hgnc/25043
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4651
  bin: 5.75e1
  variant carriers: 377
genotype depth: GenotypeDepth
  all individuals: 5479
  bin: 5.25e1
  variant carriers: 557
genotype depth: GenotypeDepth
  all individuals: 3899
  bin: 2.25e1
  variant carriers: 890
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 9.75e1
  variant carriers: 134
genotype depth: GenotypeDepth
  all individuals: 2588
  bin: 6.75e1
  variant carriers: 182
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 1.25e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 3501
  bin: 6.25e1
  variant carriers: 242
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 1.75e1
  variant carriers: 335
genotype depth: GenotypeDepth
  all individuals: 6235
  bin: 3.75e1
  variant carriers: 1683
genotype depth: GenotypeDepth
  all individuals: 6114
  bin: 4.75e1
  variant carriers: 884
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 7.25e1
  variant carriers: 121
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 8.75e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 7.75e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 9.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 8.25e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 6595
  bin: 4.25e1
  variant carriers: 1353
genotype depth: GenotypeDepth
  all individuals: 4966
  bin: 2.75e1
  variant carriers: 1493
genotype depth: GenotypeDepth
  all individuals: 5812
  bin: 3.25e1
  variant carriers: 1821
genotype quality: GenotypeQuality
  all individuals: 1327
  bin: 5.75e1
  variant carriers: 427
genotype quality: GenotypeQuality
  all individuals: 1077
  bin: 8.25e1
  variant carriers: 233
genotype quality: GenotypeQuality
  all individuals: 2536
  bin: 2.75e1
  variant carriers: 630
genotype quality: GenotypeQuality
  all individuals: 2554
  bin: 7.5e0
  variant carriers: 704
genotype quality: GenotypeQuality
  all individuals: 2127
  bin: 3.75e1
  variant carriers: 551
genotype quality: GenotypeQuality
  all individuals: 1477
  bin: 5.25e1
  variant carriers: 457
genotype quality: GenotypeQuality
  all individuals: 2371
  bin: 1.75e1
  variant carriers: 661
genotype quality: GenotypeQuality
  all individuals: 2906
  bin: 2.25e1
  variant carriers: 630
genotype quality: GenotypeQuality
  all individuals: 1705
  bin: 6.25e1
  variant carriers: 375
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
reference allele: CT
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP

19-55044241-CTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044241
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044239
    reference: chr 19
allele count: 2479
allele frequency: 3.742677697928619e-2
allele num: 66236
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.346_347delTT
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.35-8_35-7delTT
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.35-8_35-7delTT
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.346_347delTT
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.35-8_35-7delTT
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.35-8_35-7delTT
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.35-8_35-7delTT
  variant of: http://identifiers.org/hgnc/25043
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 7.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2588
  bin: 6.75e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 8.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 3501
  bin: 6.25e1
  variant carriers: 120
genotype depth: GenotypeDepth
  all individuals: 4651
  bin: 5.75e1
  variant carriers: 217
genotype depth: GenotypeDepth
  all individuals: 5812
  bin: 3.25e1
  variant carriers: 533
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 1.75e1
  variant carriers: 87
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3899
  bin: 2.25e1
  variant carriers: 204
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 1.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 6595
  bin: 4.25e1
  variant carriers: 549
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 7.25e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 6235
  bin: 3.75e1
  variant carriers: 579
genotype depth: GenotypeDepth
  all individuals: 5479
  bin: 5.25e1
  variant carriers: 296
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 8.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 4966
  bin: 2.75e1
  variant carriers: 349
genotype depth: GenotypeDepth
  all individuals: 6114
  bin: 4.75e1
  variant carriers: 430
genotype quality: GenotypeQuality
  all individuals: 2554
  bin: 7.5e0
  variant carriers: 289
genotype quality: GenotypeQuality
  all individuals: 1327
  bin: 5.75e1
  variant carriers: 148
genotype quality: GenotypeQuality
  all individuals: 2484
  bin: 1.25e1
  variant carriers: 271
genotype quality: GenotypeQuality
  all individuals: 1660
  bin: 4.75e1
  variant carriers: 166
genotype quality: GenotypeQuality
  all individuals: 8463
  bin: 9.75e1
  variant carriers: 394
genotype quality: GenotypeQuality
  all individuals: 957
  bin: 8.75e1
  variant carriers: 68
genotype quality: GenotypeQuality
  all individuals: 1798
  bin: 4.25e1
  variant carriers: 180
genotype quality: GenotypeQuality
  all individuals: 1550
  bin: 6.75e1
  variant carriers: 123
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 9.25e1
  variant carriers: 45
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: CTT
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum

19-55044241-C-CTTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044241
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044244
    reference: chr 19
allele count: 124
allele frequency: 1.872093725466514e-3
allele num: 66236
alternate allele: CTTT
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.35-9_35-7dupTTT
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.35-9_35-7dupTTT
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.35-9_35-7dupTTT
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.345_347dupTTT
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.35-9_35-7dupTTT
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.35-9_35-7dupTTT
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.345_347dupTTT
  variant of: http://identifiers.org/hgnc/25043
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6235
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4966
  bin: 2.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 5812
  bin: 3.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 5479
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6114
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6595
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4651
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 1.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 3501
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3899
  bin: 2.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2588
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 1.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2554
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1550
  bin: 6.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 2906
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2484
  bin: 1.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 8463
  bin: 9.75e1
  variant carriers: 77
genotype quality: GenotypeQuality
  all individuals: 1327
  bin: 5.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1798
  bin: 4.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 19550
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2536
  bin: 2.75e1
  variant carriers: 1
num of homozygotes: 1
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

19-55044241-CTTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044241
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044238
    reference: chr 19
allele count: 266
allele frequency: 4.015942991726554e-3
allele num: 66236
alternate allele: C
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3899
  bin: 2.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 3501
  bin: 6.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 5479
  bin: 5.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 4966
  bin: 2.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 2588
  bin: 6.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 6235
  bin: 3.75e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 6114
  bin: 4.75e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 4651
  bin: 5.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5812
  bin: 3.25e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6595
  bin: 4.25e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2536
  bin: 2.75e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 1660
  bin: 4.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 2906
  bin: 2.25e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 1798
  bin: 4.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 1267
  bin: 7.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 2554
  bin: 7.5e0
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 2127
  bin: 3.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 2357
  bin: 3.25e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 2484
  bin: 1.25e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 1265
  bin: 7.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 1550
  bin: 6.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 19550
  bin: 2.5e0
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 2371
  bin: 1.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 1705
  bin: 6.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 8463
  bin: 9.75e1
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 1477
  bin: 5.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 1077
  bin: 8.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 957
  bin: 8.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1327
  bin: 5.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 9.25e1
  variant carriers: 8
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 27
  allele frequency: 4.756871035940803e-3
  allele num: 5676
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 17
  allele frequency: 3.480753480753481e-3
  allele num: 4884
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 137
  allele frequency: 3.583760594328764e-3
  allele num: 38228
  num of homozygotes: 0
population: African
  type: Population
  allele count: 11
  allele frequency: 2.14257888585898e-3
  allele num: 5134
  num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
reference allele: CTTT
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

19-55044243-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044243
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044243
    reference: chr 19
allele count: 10
allele frequency: 1.565729316715726e-4
allele num: 63868
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.35-19T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.35-19T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.35-19T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.35-19T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.335T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.335T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.35-19T>C
  variant of: http://identifiers.org/hgnc/25043
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3835
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2744
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2232
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4835
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3158
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5072
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4415
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4296
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5190
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2547
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1209
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1949
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1884
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4182
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1111
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2921
  bin: 2.75e1
  variant carriers: 3
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

19-55044254-T-TTTTC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044254
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044258
    reference: chr 19
allele count: 1
allele frequency: 8.308960382876895e-6
allele num: 120352
alternate allele: TTTTC
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.35-7_35-6insTTCT
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.35-7_35-6insTTCT
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.35-7_35-6insTTCT
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.35-7_35-6insTTCT
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.35-7_35-6insTTCT
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.347_348insTTCT
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.347_348insTTCT
  variant of: http://identifiers.org/hgnc/25043
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 2362
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3636
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6446
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6676
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4737
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3058
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5846
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6085
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2243
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4634
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9092
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9427
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1933
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2712
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 4.25e1
  variant carriers: 0
hgvs: c.35-7_35-6insTTCT
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

19-55044255-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044255
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044255
    reference: chr 19
allele count: 1
allele frequency: 8.317391665973551e-6
allele num: 120230
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.35-7T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.35-7T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.35-7T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.35-7T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.35-7T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.347T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.347T>C
  variant of: http://identifiers.org/hgnc/25043
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4808
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5103
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4631
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3632
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3058
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4123
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6437
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5903
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6055
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6659
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2240
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1393
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1441
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
hgvs: c.35-7T>C
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

19-55044256-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044256
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044256
    reference: chr 19
allele count: 1
allele frequency: 2.037655880674872e-5
allele num: 49076
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.35-6G>A
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.348G>A
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.35-6G>A
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.35-6G>A
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.35-6G>A
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.35-6G>A
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.348G>A
  variant of: http://identifiers.org/hgnc/25043
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3323
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5669
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8288
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6643
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7797
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2620
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8971
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4782
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1134
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1135
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3415
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1119
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1883
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 975
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1087
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1012
  bin: 3.75e1
  variant carriers: 0
hgvs: c.35-6G>A
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS

19-55044256-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044256
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044256
    reference: chr 19
allele count: 869
allele frequency: 1.770722960306463e-2
allele num: 49076
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.35-6G>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.35-6G>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.35-6G>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.35-6G>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.348G>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.348G>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.35-6G>T
  variant of: http://identifiers.org/hgnc/25043
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 5669
  bin: 3.25e1
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 9.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 7797
  bin: 3.75e1
  variant carriers: 145
genotype depth: GenotypeDepth
  all individuals: 3323
  bin: 2.75e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 8971
  bin: 4.25e1
  variant carriers: 161
genotype depth: GenotypeDepth
  all individuals: 8288
  bin: 4.75e1
  variant carriers: 162
genotype depth: GenotypeDepth
  all individuals: 2620
  bin: 9.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 6.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 8.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 7.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 8.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 3178
  bin: 6.25e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 4782
  bin: 5.75e1
  variant carriers: 104
genotype depth: GenotypeDepth
  all individuals: 6643
  bin: 5.25e1
  variant carriers: 121
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 7.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 890
  bin: 4.75e1
  variant carriers: 50
genotype quality: GenotypeQuality
  all individuals: 1082
  bin: 3.25e1
  variant carriers: 55
genotype quality: GenotypeQuality
  all individuals: 1135
  bin: 2.75e1
  variant carriers: 74
genotype quality: GenotypeQuality
  all individuals: 963
  bin: 5.75e1
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 975
  bin: 4.25e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 5845
  bin: 9.75e1
  variant carriers: 252
genotype quality: GenotypeQuality
  all individuals: 1092
  bin: 1.25e1
  variant carriers: 61
genotype quality: GenotypeQuality
  all individuals: 881
  bin: 9.25e1
  variant carriers: 24
hgvs: c.35-6G>T
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

19-55044257-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044257
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044257
    reference: chr 19
allele count: 3
allele frequency: 2.777263469727828e-5
allele num: 108020
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.35-5C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.349C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.35-5C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.35-5C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.35-5C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.349C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.35-5C>T
  variant of: http://identifiers.org/hgnc/25043
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3332
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2074
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8796
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5709
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6683
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4778
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2689
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7747
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3145
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1097
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3668
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4450
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2746
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1009
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 897
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 7.5e0
  variant carriers: 0
hgvs: c.35-5C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

19-55044258-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044258
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044258
    reference: chr 19
allele count: 3
allele frequency: 2.503588476816771e-5
allele num: 119828
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.35-4C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.35-4C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.35-4C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.350C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.350C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.35-4C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.35-4C>T
  variant of: http://identifiers.org/hgnc/25043
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5847
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7777
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6568
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8356
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3309
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4838
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2679
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8717
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5960
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3623
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3077
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
hgvs: c.35-4C>T
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

19-55044259-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044259
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044259
    reference: chr 19
allele count: 454
allele frequency: 3.783144176124527e-3
allele num: 120006
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.35-3T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.35-3T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.351T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.35-3T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.351T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.35-3T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.35-3T>C
  variant of: http://identifiers.org/hgnc/25043
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6579
  bin: 5.25e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4850
  bin: 5.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 7776
  bin: 3.75e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 7.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3308
  bin: 2.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 2681
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3129
  bin: 6.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 5851
  bin: 3.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 7.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 8705
  bin: 4.25e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 8380
  bin: 4.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 8.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2070
  bin: 6.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 4121
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3673
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3117
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.75e1
  variant carriers: 1
hgvs: c.35-3T>C
num of homozygotes: 15
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

19-55044263-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044263
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044263
    reference: chr 19
allele count: 3
allele frequency: 2.508654859264463e-5
allele num: 119586
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.355A>G
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.36A>G
  hgvsp: ENST00000447145.1:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.355A>G
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.36A>G
  hgvsp: ENST00000335056.3:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.36A>G
  hgvsp: ENST00000434659.1:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.36A>G
  hgvsp: ENST00000221567.6:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.36A>G
  hgvsp: ENST00000446586.1:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25043
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6597
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8708
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4826
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8441
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5956
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3300
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2679
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7804
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4031
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4161
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6312
  bin: 6.25e1
  variant carriers: 0
hgvs: c.36A>G
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

19-55044266-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044266
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044266
    reference: chr 19
allele count: 4
allele frequency: 3.364341346072973e-5
allele num: 118894
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.358C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.39C>T
  hgvsp: ENST00000221567.6:c.39C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.39C>T
  hgvsp: ENST00000335056.3:c.39C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.358C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.39C>T
  hgvsp: ENST00000446586.1:c.39C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.39C>T
  hgvsp: ENST00000434659.1:c.39C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.39C>T
  hgvsp: ENST00000447145.1:c.39C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25043
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8689
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5960
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3299
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7805
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6576
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8400
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4826
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2707
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3118
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Phe13Phe
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

19-55044271-TGAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044271
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044268
    reference: chr 19
allele count: 1
allele frequency: 8.316423272678886e-6
allele num: 120244
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.45_47delGAA
  hgvsp: ENSP00000401224.1:p.Asn16del
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.364_366delGAA
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.45_47delGAA
  hgvsp: ENSP00000335388.3:p.Asn16del
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.364_366delGAA
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.45_47delGAA
  hgvsp: ENSP00000395115.1:p.Asn16del
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.45_47delGAA
  hgvsp: ENSP00000396692.1:p.Asn16del
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.45_47delGAA
  hgvsp: ENSP00000221567.6:p.Asn16del
  variant of: http://identifiers.org/hgnc/25043
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8396
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2708
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5989
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3328
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3115
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8691
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4823
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7810
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4719
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3174
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6392
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asn16del
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: TGAA
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum

19-55044271-TGAACCA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044271
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044265
    reference: chr 19
allele count: 1
allele frequency: 8.316423272678886e-6
allele num: 120244
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.48_53delCCAGAA
  hgvsp: ENSP00000401224.1:p.Asn16_Gln17del
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.48_53delCCAGAA
  hgvsp: ENSP00000395115.1:p.Asn16_Gln17del
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.367_372delCCAGAA
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.367_372delCCAGAA
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.48_53delCCAGAA
  hgvsp: ENSP00000335388.3:p.Asn16_Gln17del
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.48_53delCCAGAA
  hgvsp: ENSP00000396692.1:p.Asn16_Gln17del
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.48_53delCCAGAA
  hgvsp: ENSP00000221567.6:p.Asn16_Gln17del
  variant of: http://identifiers.org/hgnc/25043
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2708
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8396
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5989
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8691
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3328
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4823
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3115
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7810
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3174
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29645
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asn16_Gln17del
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
reference allele: TGAACCA
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

19-55044272-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044272
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044272
    reference: chr 19
allele count: 4
allele frequency: 3.327178053933557e-5
allele num: 120222
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.45G>A
  hgvsp: ENST00000446586.1:c.45G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.45G>A
  hgvsp: ENST00000447145.1:c.45G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.45G>A
  hgvsp: ENST00000434659.1:c.45G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.364G>A
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.45G>A
  hgvsp: ENST00000221567.6:c.45G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.45G>A
  hgvsp: ENST00000335056.3:c.45G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.364G>A
  variant of: http://identifiers.org/hgnc/25043
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8693
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6580
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7806
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6000
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3325
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2709
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8397
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4821
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29634
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3751
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu15Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD

19-55044274-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044274
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044274
    reference: chr 19
allele count: 1
allele frequency: 8.316284949187499e-6
allele num: 120246
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.47A>G
  hgvsp: ENSP00000335388.3:p.Asn16Ser
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.366A>G
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.47A>G
  hgvsp: ENSP00000396692.1:p.Asn16Ser
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.47A>G
  hgvsp: ENSP00000221567.6:p.Asn16Ser
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.47A>G
  hgvsp: ENSP00000395115.1:p.Asn16Ser
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.366A>G
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.47A>G
  hgvsp: ENSP00000401224.1:p.Asn16Ser
  variant of: http://identifiers.org/hgnc/25043
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2710
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2088
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3113
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7812
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4822
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3324
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8396
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6002
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6580
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8692
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3549
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4228
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asn16Ser
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

19-55044275-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044275
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044275
    reference: chr 19
allele count: 1
allele frequency: 8.316284949187499e-6
allele num: 120246
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.48C>T
  hgvsp: ENST00000335056.3:c.48C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.48C>T
  hgvsp: ENST00000221567.6:c.48C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.48C>T
  hgvsp: ENST00000446586.1:c.48C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.48C>T
  hgvsp: ENST00000447145.1:c.48C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.367C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.367C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.48C>T
  hgvsp: ENST00000434659.1:c.48C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25043
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6578
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3327
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4823
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7810
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6003
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2711
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8396
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8692
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3179
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4227
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asn16Asn
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/19-55044277-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044277
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044277
    reference: chr 19
allele count: 2
allele frequency: 1.663146340246478e-5
allele num: 120254
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.50A>C
  hgvsp: ENSP00000401224.1:p.Gln17Pro
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.50A>C
  hgvsp: ENSP00000335388.3:p.Gln17Pro
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.50A>C
  hgvsp: ENSP00000395115.1:p.Gln17Pro
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.369A>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.50A>C
  hgvsp: ENSP00000221567.6:p.Gln17Pro
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.50A>C
  hgvsp: ENSP00000396692.1:p.Gln17Pro
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.369A>C
  variant of: http://identifiers.org/hgnc/25043
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6006
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8695
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6579
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7812
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4823
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3117
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3325
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2710
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8394
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4101
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3755
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gln17Pro
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

19-55044279-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044279
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044279
    reference: chr 19
allele count: 3
allele frequency: 2.494636531457367e-5
allele num: 120258
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.52A>T
  hgvsp: ENSP00000401224.1:p.Lys18Ter
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.52A>T
  hgvsp: ENSP00000335388.3:p.Lys18Ter
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.371A>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.52A>T
  hgvsp: ENSP00000395115.1:p.Lys18Ter
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.52A>T
  hgvsp: ENSP00000396692.1:p.Lys18Ter
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: true
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.52A>T
  hgvsp: ENSP00000221567.6:p.Lys18Ter
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.371A>T
  variant of: http://identifiers.org/hgnc/25043
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6005
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2753
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6555
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2092
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3332
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8385
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4804
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7807
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3100
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8695
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3546
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4721
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Lys18Ter
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

19-55044290-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044290
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044290
    reference: chr 19
allele count: 1
allele frequency: 8.315178526882972e-6
allele num: 120262
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.63A>T
  hgvsp: ENST00000434659.1:c.63A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.63A>T
  hgvsp: ENST00000447145.1:c.63A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.63A>T
  hgvsp: ENST00000221567.6:c.63A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.382A>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.63A>T
  hgvsp: ENST00000446586.1:c.63A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.382A>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.63A>T
  hgvsp: ENST00000335056.3:c.63A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25043
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8704
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8399
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3350
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2696
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4828
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7818
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6015
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6583
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29624
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3562
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3758
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4734
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro21Pro
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum

19-55044291-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044291
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044291
    reference: chr 19
allele count: 1
allele frequency: 8.313242996092776e-6
allele num: 120290
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.64C>T
  hgvsp: ENSP00000221567.6:p.His22Tyr
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.64C>T
  hgvsp: ENSP00000401224.1:p.His22Tyr
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.383C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.64C>T
  hgvsp: ENSP00000396692.1:p.His22Tyr
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.64C>T
  hgvsp: ENSP00000335388.3:p.His22Tyr
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.64C>T
  hgvsp: ENSP00000395115.1:p.His22Tyr
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.383C>T
  variant of: http://identifiers.org/hgnc/25043
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7816
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2694
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8710
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3354
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4829
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8403
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6018
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6585
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3129
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29656
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4229
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3184
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
hgvs: p.His22Tyr
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS

19-55044293-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044293
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044293
    reference: chr 19
allele count: 1
allele frequency: 8.31255195344971e-6
allele num: 120300
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.66T>C
  hgvsp: ENST00000447145.1:c.66T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.66T>C
  hgvsp: ENST00000434659.1:c.66T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.66T>C
  hgvsp: ENST00000335056.3:c.66T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.66T>C
  hgvsp: ENST00000221567.6:c.66T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.66T>C
  hgvsp: ENST00000446586.1:c.66T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.385T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.385T>C
  variant of: http://identifiers.org/hgnc/25043
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2694
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6017
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4829
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8401
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7816
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3353
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6586
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8711
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4226
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3185
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4114
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
hgvs: p.His22His
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

19-55044294-GCGGGTGAGTCCTATC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044294
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044279
    reference: chr 19
allele count: 1
allele frequency: 8.312966565248474e-6
allele num: 120294
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  variant of: http://identifiers.org/hgnc/25043
canonical: true
consequence: splice donor
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 2694
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3354
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7816
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8713
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6015
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4829
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6587
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8401
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6515
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3184
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3566
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
hgvs: c.69_70+13delGGGTGAGTCCTATCC
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: GCGGGTGAGTCCTATC
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD

19-55044295-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044295
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044295
    reference: chr 19
allele count: 3
allele frequency: 2.493848507016027e-5
allele num: 120296
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.68C>T
  hgvsp: ENSP00000401224.1:p.Ala23Val
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.68C>T
  hgvsp: ENSP00000221567.6:p.Ala23Val
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.68C>T
  hgvsp: ENSP00000396692.1:p.Ala23Val
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.387C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.68C>T
  hgvsp: ENSP00000395115.1:p.Ala23Val
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.387C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.68C>T
  hgvsp: ENSP00000335388.3:p.Ala23Val
  variant of: http://identifiers.org/hgnc/25043
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4829
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2695
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7815
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8712
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6016
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3354
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8401
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6587
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4112
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3183
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala23Val
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff

19-55044296-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044296
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044296
    reference: chr 19
allele count: 6
allele frequency: 4.987779939149085e-5
allele num: 120294
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.69G>A
  hgvsp: ENST00000221567.6:c.69G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.69G>A
  hgvsp: ENST00000447145.1:c.69G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.69G>A
  hgvsp: ENST00000446586.1:c.69G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.69G>A
  hgvsp: ENST00000335056.3:c.69G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.388G>A
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.388G>A
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.69G>A
  hgvsp: ENST00000434659.1:c.69G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25043
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3358
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8708
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7812
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6008
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6589
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2698
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8400
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4830
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 2.25e1
  variant carriers: 0
hgvs: c.69G>A
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

19-55044298-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044298
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044298
    reference: chr 19
allele count: 1
allele frequency: 8.312275568559649e-6
allele num: 120304
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.70+1G>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.389+1G>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.70+1G>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.389+1G>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.70+1G>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.70+1G>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.70+1G>T
  variant of: http://identifiers.org/hgnc/25043
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2694
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3362
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7814
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8401
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8709
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6009
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4829
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6590
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4225
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3565
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 3.25e1
  variant carriers: 0
hgvs: c.70+1G>T
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

19-55044300-GAGTCCTATCCC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044300
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044289
    reference: chr 19
allele count: 1
allele frequency: 8.312137383006666e-6
allele num: 120306
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  variant of: http://identifiers.org/hgnc/25043
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3361
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4838
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6015
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8710
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8410
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2691
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7820
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2092
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29689
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4221
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4725
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3561
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 2.25e1
  variant carriers: 0
hgvs: c.70+11_70+21delTCCCAGTCCTA
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: GAGTCCTATCCC
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

19-55044309-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044309
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044309
    reference: chr 19
allele count: 145
allele frequency: 1.205099649274447e-3
allele num: 120322
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.70+12C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.389+12C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.70+12C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.70+12C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.70+12C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.389+12C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.70+12C>T
  variant of: http://identifiers.org/hgnc/25043
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 4826
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 9.75e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 7804
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3358
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 5998
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 8400
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2100
  bin: 6.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8691
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6593
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 9.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 4721
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3549
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4213
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6501
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3173
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3749
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum

19-55044311-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044311
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044311
    reference: chr 19
allele count: 1
allele frequency: 8.310203267571925e-6
allele num: 120334
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.389+14C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.70+14C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.389+14C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.70+14C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.70+14C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.70+14C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.70+14C>T
  variant of: http://identifiers.org/hgnc/25043
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7811
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8409
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6601
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3362
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2709
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4844
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8698
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3127
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2099
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4724
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

19-55044313-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044313
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044313
    reference: chr 19
allele count: 2
allele frequency: 1.662013030182157e-5
allele num: 120336
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.389+16G>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.70+16G>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.70+16G>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.70+16G>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.70+16G>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.70+16G>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.389+16G>C
  variant of: http://identifiers.org/hgnc/25043
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7811
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8697
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4844
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3359
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1563
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6002
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8409
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2099
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6601
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2711
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3549
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4217
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4726
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

http://identifiers.org/exac.variant/19-55044315-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044315
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044315
    reference: chr 19
allele count: 1
allele frequency: 8.310065150910783e-6
allele num: 120336
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.389+18C>A
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.70+18C>A
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.70+18C>A
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.70+18C>A
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.389+18C>A
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.70+18C>A
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.70+18C>A
  variant of: http://identifiers.org/hgnc/25043
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8409
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4845
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2099
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6002
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2710
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7810
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6601
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3359
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8698
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3175
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3546
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3754
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4723
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

19-55044321-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044321
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044321
    reference: chr 19
allele count: 1
allele frequency: 8.310065150910783e-6
allele num: 120336
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.70+24A>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.70+24A>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.389+24A>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.389+24A>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.70+24A>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.70+24A>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.70+24A>T
  variant of: http://identifiers.org/hgnc/25043
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3361
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4846
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6602
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5995
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8408
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8698
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2099
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7810
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2710
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3176
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6482
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29754
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-55044324-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044324
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044324
    reference: chr 19
allele count: 1
allele frequency: 8.310065150910783e-6
allele num: 120336
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.389+27C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.70+27C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.70+27C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.389+27C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.70+27C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.70+27C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.70+27C>T
  variant of: http://identifiers.org/hgnc/25043
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8408
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2099
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3348
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6601
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7813
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5992
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2710
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8698
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4846
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4105
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3540
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ

19-55044327-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044327
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044327
    reference: chr 19
allele count: 5
allele frequency: 4.154894465680572e-5
allele num: 120340
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.70+30T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.70+30T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.389+30T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.70+30T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.70+30T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.389+30T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.70+30T>C
  variant of: http://identifiers.org/hgnc/25043
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2100
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2713
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8696
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5992
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8405
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6600
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3345
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4846
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7812
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29755
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3176
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4215
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: African
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

19-55044335-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044335
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044335
    reference: chr 19
allele count: 1
allele frequency: 8.307855908547122e-6
allele num: 120368
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.70+38A>G
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.70+38A>G
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.389+38A>G
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.70+38A>G
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.389+38A>G
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.70+38A>G
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.70+38A>G
  variant of: http://identifiers.org/hgnc/25043
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6601
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8406
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3323
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5979
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2710
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8695
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7806
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4847
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6365
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4103
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: African
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-55044339-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044339
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044339
    reference: chr 19
allele count: 1
allele frequency: 8.30827005200977e-6
allele num: 120362
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.389+42A>G
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.70+42A>G
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.70+42A>G
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.70+42A>G
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.70+42A>G
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.70+42A>G
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.389+42A>G
  variant of: http://identifiers.org/hgnc/25043
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6600
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5970
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3300
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7803
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8697
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2710
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8404
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4847
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3178
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3527
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4101
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29751
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

19-55044344-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044344
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044344
    reference: chr 19
allele count: 1
allele frequency: 8.307993951780402e-6
allele num: 120366
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.70+47T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.70+47T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.70+47T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.70+47T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.70+47T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.389+47T>C
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.389+47T>C
  variant of: http://identifiers.org/hgnc/25043
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7801
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8403
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4847
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3274
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5940
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6600
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2710
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8699
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4209
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3755
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

19-55044901-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044901
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044901
    reference: chr 19
allele count: 1
allele frequency: 8.537522410996328e-6
allele num: 117130
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.71-50A>G
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.71-50A>G
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.390-50A>G
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.71-50A>G
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.71-50A>G
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.71-50A>G
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.390-50A>G
  variant of: http://identifiers.org/hgnc/25043
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4549
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4305
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4607
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3606
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3101
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2692
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10158
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4398
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7104
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4348
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1254
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2632
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 813
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1243
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD

19-55044902-C-CG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044902
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044903
    reference: chr 19
allele count: 1
allele frequency: 8.554466286848364e-6
allele num: 116898
alternate allele: CG
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.71-43dupG
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.71-43dupG
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.390-43dupG
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.71-43dupG
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.390-43dupG
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.71-43dupG
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.71-43dupG
  variant of: http://identifiers.org/hgnc/25043
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7106
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3148
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4609
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4348
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10153
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2337
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4401
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4305
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2693
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4547
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3606
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4625
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1249
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2611
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

19-55044902-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044902
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044902
    reference: chr 19
allele count: 6
allele frequency: 5.132679772109018e-5
allele num: 116898
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.390-49C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.71-49C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.390-49C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.71-49C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.71-49C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.71-49C>T
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.71-49C>T
  variant of: http://identifiers.org/hgnc/25043
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2337
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3606
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4609
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4547
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3148
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7106
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4401
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4348
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2693
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4305
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10153
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4625
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2029
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1282
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 787
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

19-55044903-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55044903
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 55044903
    reference: chr 19
allele count: 5
allele frequency: 4.271678769756514e-5
allele num: 117050
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000396692
  ensembl transcript: ENST00000446586
  gene symbol: KIR3DX1
  hgvsc: ENST00000446586.1:c.71-48G>A
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000335388
  ensembl transcript: ENST00000335056
  gene symbol: KIR3DX1
  hgvsc: ENST00000335056.3:c.71-48G>A
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000395115
  ensembl transcript: ENST00000447145
  gene symbol: KIR3DX1
  hgvsc: ENST00000447145.1:c.71-48G>A
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000401224
  ensembl transcript: ENST00000434659
  gene symbol: KIR3DX1
  hgvsc: ENST00000434659.1:c.71-48G>A
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000465702
  gene symbol: KIR3DX1
  hgvsc: ENST00000465702.1:n.390-48G>A
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl protein: ENSP00000221567
  ensembl transcript: ENST00000221567
  gene symbol: KIR3DX1
  hgvsc: ENST00000221567.6:c.71-48G>A
  variant of: http://identifiers.org/hgnc/25043
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104970
  ensembl transcript: ENST00000471931
  gene symbol: KIR3DX1
  hgvsc: ENST00000471931.1:n.390-48G>A
  variant of: http://identifiers.org/hgnc/25043
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4607
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4346
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2694
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10170
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4304
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4399
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2328
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3607
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7104
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4549
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3266
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2193
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2036
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1899
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 4
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52537
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2093
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
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African
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allele count: 1
allele frequency: 1.019991840065279e-4
allele num: 9804
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.04e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.98e0

DP
type: SiteQuality
SIO_000300: 3.80912e6

QD
type: SiteQuality
SIO_000300: 9.720000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: 2.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-2

FS
type: SiteQuality
SIO_000300: 4.17e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 981
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996703626011388e-5
allele num: 66740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

DP
type: SiteQuality
SIO_000300: 3.809093e6

FS
type: SiteQuality
SIO_000300: 4.945e0

VQSLOD
type: SiteQuality
SIO_000300: -4.027e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.24e-2

QD
type: SiteQuality
SIO_000300: 9.43e0

MQRankSum
type: SiteQuality
SIO_000300: 1.78e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.83e-1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 28

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
allele num: 16512
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African
type: Population
allele count: 28
allele frequency: 2.855977152182782e-3
allele num: 9804
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

QD
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SIO_000300: 1.201e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.47e-1

DP
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SIO_000300: 3.810488e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.219e0

VQSLOD
type: SiteQuality
SIO_000300: 5.33e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.63e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 10

GenotypeQuality
all individuals: 0
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
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European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.498351813005694e-4
allele num: 66740
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.219e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

MQRankSum
type: SiteQuality
SIO_000300: 3.63e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.33e0

InbreedingCoeff
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SIO_000300: 5.7e-3

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.43e-1

DP
type: SiteQuality
SIO_000300: 3.810488e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 137
allele frequency: 2.052741983817801e-3
allele num: 66740
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.319281271596407e-4
allele num: 11576
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 3
allele frequency: 3.059975520195838e-4
allele num: 9804
num of homozygotes: 0

South Asian
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allele count: 19
allele frequency: 1.150678294573644e-3
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 33
allele frequency: 4.989416389476867e-3
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.333333333333334e-3
allele num: 900
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.44e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.323e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e0

VQSLOD
type: SiteQuality
SIO_000300: 5.87e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 3.815935e6

MQ
type: SiteQuality
SIO_000300: 5.967e1

MQRankSum
type: SiteQuality
SIO_000300: 3.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.75e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 0
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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East Asian
type: Population
allele count: 53
allele frequency: 6.144215163459309e-3
allele num: 8626
num of homozygotes: 0

African
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allele count: 2
allele frequency: 2.039983680130559e-4
allele num: 9804
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.06e0

BaseQRankSum
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SIO_000300: -3.146e0

DP
type: SiteQuality
SIO_000300: 3.796776e6

InbreedingCoeff
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SIO_000300: 8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.64e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

QD
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.76e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 1.159285879897983e-4
allele num: 8626
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African
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 900
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.106e0

BaseQRankSum
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QD
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MQ
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SIO_000300: 5.872e1

DP
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SIO_000300: 3.789685e6

MQRankSum
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ClippingRankSum
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.44e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.994e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.7e-1

VQSLOD
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MQRankSum
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QD
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FS
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 3.1e-3

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -3.28e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 900
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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East Asian
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allele frequency: 2.318571759795966e-4
allele num: 8626
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
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MQ
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BaseQRankSum
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ReadPosRankSum
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QD
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DP
type: SiteQuality
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
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allele count: 9
allele frequency: 1.348516631705124e-4
allele num: 66740
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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allele num: 11576
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 3.633720930232558e-4
allele num: 16512
num of homozygotes: 0

BaseQRankSum
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ClippingRankSum
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MQRankSum
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VQSLOD
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FS
type: SiteQuality
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DP
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MQ
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.996703626011388e-5
allele num: 66740
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.965e1

MQRankSum
type: SiteQuality
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BaseQRankSum
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SIO_000300: -1.658e0

FS
type: SiteQuality
SIO_000300: 2.706e0

VQSLOD
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SIO_000300: 1.31e0

DP
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ClippingRankSum
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SIO_000300: -5.4e-1

InbreedingCoeff
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SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.85e-1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.677e0

DP
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ClippingRankSum
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SIO_000300: 7.32e-1

VQSLOD
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SIO_000300: 4.33e-1

QD
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

ReadPosRankSum
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FS
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SIO_000300: 3.109e0

MQ
type: SiteQuality
SIO_000300: 5.937e1

MQRankSum
type: SiteQuality
SIO_000300: -7.52e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele frequency: 0.0e0
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InbreedingCoeff
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SIO_000300: 4.0e-3

FS
type: SiteQuality
SIO_000300: 1.578e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.95e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

DP
type: SiteQuality
SIO_000300: 3.78771e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.62e0

VQSLOD
type: SiteQuality
SIO_000300: -6.652e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.139e0

QD
type: SiteQuality
SIO_000300: 1.153e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.07e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 8
allele frequency: 1.209555488358028e-3
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 24
allele frequency: 2.073613271124935e-3
allele num: 11574
num of homozygotes: 1

African
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allele count: 6
allele frequency: 6.119951040391676e-4
allele num: 9804
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 257
allele frequency: 3.850764159424633e-3
allele num: 66740
num of homozygotes: 1

Other
type: Population
allele count: 1
allele frequency: 1.111111111111111e-3
allele num: 900
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.3e0

QD
type: SiteQuality
SIO_000300: 1.356e1

MQ
type: SiteQuality
SIO_000300: 5.975e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.291e0

DP
type: SiteQuality
SIO_000300: 3.787833e6

MQRankSum
type: SiteQuality
SIO_000300: 2.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.66e-1

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

FS
type: SiteQuality
SIO_000300: 2.339e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.04e-1

MQ
type: SiteQuality
SIO_000300: 5.92e1

DP
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.197e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 27

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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South Asian
type: Population
allele count: 26
allele frequency: 1.574612403100775e-3
allele num: 16512
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.959e1

ClippingRankSum
type: SiteQuality
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MQRankSum
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FS
type: SiteQuality
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VQSLOD
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 900
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

QD
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FS
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
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MQ
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
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allele count: 8
allele frequency: 1.19871737241152e-4
allele num: 66738
num of homozygotes: 0

QD
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
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DP
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InbreedingCoeff
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FS
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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VQSLOD
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

European (Finnish)
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allele frequency: 1.209555488358028e-3
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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Other
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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VQSLOD
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InbreedingCoeff
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DP
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ReadPosRankSum
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MQRankSum
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FS
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BaseQRankSum
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MQ
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QD
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ClippingRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 3
allele frequency: 1.816860465116279e-4
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.032e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.29e-1

FS
type: SiteQuality
SIO_000300: 7.62e-1

QD
type: SiteQuality
SIO_000300: 1.607e1

MQRankSum
type: SiteQuality
SIO_000300: 7.81e-1

DP
type: SiteQuality
SIO_000300: 3.768316e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.05e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.5e-1

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1482
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1096
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2113
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52430
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 73
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 729
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.91e-1

DP
type: SiteQuality
SIO_000300: 3.768231e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.03e0

MQRankSum
type: SiteQuality
SIO_000300: 1.39e0

QD
type: SiteQuality
SIO_000300: 1.297e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 9.3e-2

GenotypeQuality
all individuals: 1324
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1051
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3407
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1743
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2442
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3747
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1243
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 793
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1926
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 780
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3328
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35194
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 9.017132551848512e-4
allele num: 2218
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8258
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5044
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 442
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.22e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.41e-1

FS
type: SiteQuality
SIO_000300: 5.372e0

MQRankSum
type: SiteQuality
SIO_000300: -3.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

QD
type: SiteQuality
SIO_000300: 1.331e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.2e-1

MQ
type: SiteQuality
SIO_000300: 6.072e1

DP
type: SiteQuality
SIO_000300: 2.882188e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.38e-1

GenotypeQuality
all individuals: 2792
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10488
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2147
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6532
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 508
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1685
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1568
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 762
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 980
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1205
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30120
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1666
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4404
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3324
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2908
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 384
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 4.219409282700422e-4
allele num: 7110
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.344e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.72e-2

DP
type: SiteQuality
SIO_000300: 2.90311e6

MQRankSum
type: SiteQuality
SIO_000300: -2.419e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.09e0

FS
type: SiteQuality
SIO_000300: 1.012e0

MQ
type: SiteQuality
SIO_000300: 5.656e1

VQSLOD
type: SiteQuality
SIO_000300: -6.649e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e-1

GenotypeQuality
all individuals: 1822
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1048
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6899
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1205
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 977
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3092
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 653
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 658
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3340
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7094
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2920
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 382
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.269632319564231e-4
allele num: 4406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1668
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30188
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.639e0

VQSLOD
type: SiteQuality
SIO_000300: -1.84e-1

MQ
type: SiteQuality
SIO_000300: 5.649e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.64e-2

DP
type: SiteQuality
SIO_000300: 2.906091e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.17e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.194e0

QD
type: SiteQuality
SIO_000300: 2.006e1

GenotypeQuality
all individuals: 67
bin: 7.5e0
variant carriers: 55

GenotypeQuality
all individuals: 71
bin: 1.75e1
variant carriers: 67

GenotypeQuality
all individuals: 49522
bin: 9.75e1
variant carriers: 47377

GenotypeQuality
all individuals: 75
bin: 1.25e1
variant carriers: 69

GenotypeQuality
all individuals: 287
bin: 4.25e1
variant carriers: 279

GenotypeQuality
all individuals: 926
bin: 6.75e1
variant carriers: 755

GenotypeQuality
all individuals: 130
bin: 2.75e1
variant carriers: 114

GenotypeQuality
all individuals: 1433
bin: 8.25e1
variant carriers: 1203

GenotypeQuality
all individuals: 1262
bin: 8.75e1
variant carriers: 1120

GenotypeQuality
all individuals: 1717
bin: 9.25e1
variant carriers: 1502

GenotypeQuality
all individuals: 1269
bin: 7.75e1
variant carriers: 1076

Other
type: Population
allele count: 683
allele frequency: 7.605790645879733e-1
allele num: 898
num of homozygotes: 259

African
type: Population
allele count: 7947
allele frequency: 8.162489728841413e-1
allele num: 9736
num of homozygotes: 3229

European (Non-Finnish)
type: Population
allele count: 48899
allele frequency: 7.376527379695278e-1
allele num: 66290
num of homozygotes: 18078

European (Finnish)
type: Population
allele count: 4961
allele frequency: 7.537222728653905e-1
allele num: 6582
num of homozygotes: 1875

Latino
type: Population
allele count: 9036
allele frequency: 7.84783741532048e-1
allele num: 11514
num of homozygotes: 3541

South Asian
type: Population
allele count: 12337
allele frequency: 7.512483254171234e-1
allele num: 16422
num of homozygotes: 4674

East Asian
type: Population
allele count: 7690
allele frequency: 8.966884328358209e-1
allele num: 8576
num of homozygotes: 3443

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.84e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.43e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.81e-1

MQ
type: SiteQuality
SIO_000300: 6.106e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.74e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.0e-2

DP
type: SiteQuality
SIO_000300: 2.801963e6

VQSLOD
type: SiteQuality
SIO_000300: 4.82e0

QD
type: SiteQuality
SIO_000300: 2.966e1

GenotypeQuality
all individuals: 3183
bin: 2.5e0
variant carriers: 3

GenotypeQuality
all individuals: 503
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 101
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3239
bin: 8.25e1
variant carriers: 5

GenotypeQuality
all individuals: 374
bin: 5.75e1
variant carriers: 4

GenotypeQuality
all individuals: 389
bin: 2.75e1
variant carriers: 5

GenotypeQuality
all individuals: 543
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 101
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 485
bin: 3.25e1
variant carriers: 6

GenotypeQuality
all individuals: 384
bin: 4.25e1
variant carriers: 4

GenotypeQuality
all individuals: 31754
bin: 9.75e1
variant carriers: 335

South Asian
type: Population
allele count: 400
allele frequency: 2.631232732535193e-2
allele num: 15202
num of homozygotes: 8

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6310
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.104484205875856e-4
allele num: 9054
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.287275290800141e-4
allele num: 11348
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.816646329715497e-5
allele num: 62284
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.173708920187793e-3
allele num: 852
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.71e-1

FS
type: SiteQuality
SIO_000300: 8.100000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.75e0

QD
type: SiteQuality
SIO_000300: 9.210000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.61e-2

MQ
type: SiteQuality
SIO_000300: 5.854e1

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.92e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.1e-2

DP
type: SiteQuality
SIO_000300: 3.062982e6

GenotypeQuality
all individuals: 134
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 2202
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 490
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 118
bin: 1.25e1
variant carriers: 3

GenotypeQuality
all individuals: 419
bin: 2.75e1
variant carriers: 5

GenotypeQuality
all individuals: 4060
bin: 6.25e1
variant carriers: 5

GenotypeQuality
all individuals: 576
bin: 4.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2231
bin: 7.25e1
variant carriers: 6

GenotypeQuality
all individuals: 31744
bin: 9.75e1
variant carriers: 367

GenotypeQuality
all individuals: 3448
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 105
bin: 1.75e1
variant carriers: 4

South Asian
type: Population
allele count: 414
allele frequency: 2.72117786249507e-2
allele num: 15214
num of homozygotes: 9

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6324
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.424877124224999e-5
allele num: 62258
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.286343612334801e-4
allele num: 11350
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.173708920187793e-3
allele num: 852
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.103752759381898e-4
allele num: 9060
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.821e1

VQSLOD
type: SiteQuality
SIO_000300: -1.963e0

MQRankSum
type: SiteQuality
SIO_000300: -3.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.03e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e0

FS
type: SiteQuality
SIO_000300: 8.48e-1

QD
type: SiteQuality
SIO_000300: 1.002e1

DP
type: SiteQuality
SIO_000300: 3.066227e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.59e-1

GenotypeQuality
all individuals: 2357
bin: 3.25e1
variant carriers: 244

GenotypeQuality
all individuals: 1550
bin: 6.75e1
variant carriers: 287

GenotypeQuality
all individuals: 2536
bin: 2.75e1
variant carriers: 282

GenotypeQuality
all individuals: 2371
bin: 1.75e1
variant carriers: 314

GenotypeQuality
all individuals: 1265
bin: 7.75e1
variant carriers: 272

GenotypeQuality
all individuals: 8463
bin: 9.75e1
variant carriers: 3073

GenotypeQuality
all individuals: 1660
bin: 4.75e1
variant carriers: 301

GenotypeQuality
all individuals: 1798
bin: 4.25e1
variant carriers: 345

GenotypeQuality
all individuals: 1077
bin: 8.25e1
variant carriers: 258

GenotypeQuality
all individuals: 1327
bin: 5.75e1
variant carriers: 275

GenotypeQuality
all individuals: 2906
bin: 2.25e1
variant carriers: 315

Other
type: Population
allele count: 56
allele frequency: 1.098039215686274e-1
allele num: 510
num of homozygotes: 3

European (Non-Finnish)
type: Population
allele count: 4574
allele frequency: 1.196505179449618e-1
allele num: 38228
num of homozygotes: 86

Latino
type: Population
allele count: 377
allele frequency: 6.64200140944327e-2
allele num: 5676
num of homozygotes: 14

African
type: Population
allele count: 839
allele frequency: 1.634203350214258e-1
allele num: 5134
num of homozygotes: 44

East Asian
type: Population
allele count: 254
allele frequency: 5.200655200655201e-2
allele num: 4884
num of homozygotes: 7

South Asian
type: Population
allele count: 815
allele frequency: 9.864439603001694e-2
allele num: 8262
num of homozygotes: 48

European (Finnish)
type: Population
allele count: 415
allele frequency: 1.171654432523998e-1
allele num: 3542
num of homozygotes: 12

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.481e-1

QD
type: SiteQuality
SIO_000300: 2.88e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.11e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.08e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.91e1

DP
type: SiteQuality
SIO_000300: 2.702873e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.909999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.11e-1

GenotypeQuality
all individuals: 2554
bin: 7.5e0
variant carriers: 120

GenotypeQuality
all individuals: 860
bin: 9.25e1
variant carriers: 89

GenotypeQuality
all individuals: 2906
bin: 2.25e1
variant carriers: 112

GenotypeQuality
all individuals: 2357
bin: 3.25e1
variant carriers: 105

GenotypeQuality
all individuals: 1550
bin: 6.75e1
variant carriers: 90

GenotypeQuality
all individuals: 1660
bin: 4.75e1
variant carriers: 119

GenotypeQuality
all individuals: 1798
bin: 4.25e1
variant carriers: 95

GenotypeQuality
all individuals: 1267
bin: 7.25e1
variant carriers: 83

GenotypeQuality
all individuals: 2127
bin: 3.75e1
variant carriers: 112

GenotypeQuality
all individuals: 1077
bin: 8.25e1
variant carriers: 72

GenotypeQuality
all individuals: 1705
bin: 6.25e1
variant carriers: 92

African
type: Population
allele count: 310
allele frequency: 6.038176860148033e-2
allele num: 5134
num of homozygotes: 19

European (Non-Finnish)
type: Population
allele count: 1583
allele frequency: 4.140943810819295e-2
allele num: 38228
num of homozygotes: 54

South Asian
type: Population
allele count: 524
allele frequency: 6.342290002420721e-2
allele num: 8262
num of homozygotes: 19

Other
type: Population
allele count: 26
allele frequency: 5.098039215686274e-2
allele num: 510
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 121
allele frequency: 3.416149068322982e-2
allele num: 3542
num of homozygotes: 5

Latino
type: Population
allele count: 177
allele frequency: 3.118393234672304e-2
allele num: 5676
num of homozygotes: 3

East Asian
type: Population
allele count: 142
allele frequency: 2.907452907452908e-2
allele num: 4884
num of homozygotes: 4

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.909999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.91e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.11e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.08e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.481e-1

QD
type: SiteQuality
SIO_000300: 2.88e0

DP
type: SiteQuality
SIO_000300: 2.702873e6

GenotypeQuality
all individuals: 2357
bin: 3.25e1
variant carriers: 608

GenotypeQuality
all individuals: 2484
bin: 1.25e1
variant carriers: 697

GenotypeQuality
all individuals: 957
bin: 8.75e1
variant carriers: 227

GenotypeQuality
all individuals: 860
bin: 9.25e1
variant carriers: 173

GenotypeQuality
all individuals: 19550
bin: 2.5e0
variant carriers: 537

GenotypeQuality
all individuals: 1798
bin: 4.25e1
variant carriers: 513

GenotypeQuality
all individuals: 1265
bin: 7.75e1
variant carriers: 300

GenotypeQuality
all individuals: 1267
bin: 7.25e1
variant carriers: 337

GenotypeQuality
all individuals: 8463
bin: 9.75e1
variant carriers: 1529

GenotypeQuality
all individuals: 1550
bin: 6.75e1
variant carriers: 322

GenotypeQuality
all individuals: 1660
bin: 4.75e1
variant carriers: 506

Other
type: Population
allele count: 62
allele frequency: 1.215686274509804e-1
allele num: 510
num of homozygotes: 0

Latino
type: Population
allele count: 471
allele frequency: 8.298097251585623e-2
allele num: 5676
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5359
allele frequency: 1.401852045621011e-1
allele num: 38228
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 333
allele frequency: 9.40146809712027e-2
allele num: 3542
num of homozygotes: 0

South Asian
type: Population
allele count: 955
allele frequency: 1.155894456548051e-1
allele num: 8262
num of homozygotes: 0

African
type: Population
allele count: 358
allele frequency: 6.973120373977405e-2
allele num: 5134
num of homozygotes: 0

East Asian
type: Population
allele count: 277
allele frequency: 5.671580671580671e-2
allele num: 4884
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.88e0

MQRankSum
type: SiteQuality
SIO_000300: -8.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.909999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.08e0

MQ
type: SiteQuality
SIO_000300: 5.91e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.481e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.11e-1

DP
type: SiteQuality
SIO_000300: 2.702873e6

GenotypeQuality
all individuals: 2371
bin: 1.75e1
variant carriers: 271

GenotypeQuality
all individuals: 19550
bin: 2.5e0
variant carriers: 286

GenotypeQuality
all individuals: 1267
bin: 7.25e1
variant carriers: 70

GenotypeQuality
all individuals: 2906
bin: 2.25e1
variant carriers: 242

GenotypeQuality
all individuals: 2357
bin: 3.25e1
variant carriers: 201

GenotypeQuality
all individuals: 1477
bin: 5.25e1
variant carriers: 167

GenotypeQuality
all individuals: 2127
bin: 3.75e1
variant carriers: 180

GenotypeQuality
all individuals: 2536
bin: 2.75e1
variant carriers: 218

GenotypeQuality
all individuals: 1077
bin: 8.25e1
variant carriers: 66

GenotypeQuality
all individuals: 1705
bin: 6.25e1
variant carriers: 112

GenotypeQuality
all individuals: 1265
bin: 7.75e1
variant carriers: 100

South Asian
type: Population
allele count: 460
allele frequency: 5.567659162430404e-2
allele num: 8262
num of homozygotes: 0

African
type: Population
allele count: 138
allele frequency: 2.687962602259447e-2
allele num: 5134
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 79
allele frequency: 2.230378317334839e-2
allele num: 3542
num of homozygotes: 0

East Asian
type: Population
allele count: 95
allele frequency: 1.945126945126945e-2
allele num: 4884
num of homozygotes: 0

Other
type: Population
allele count: 10
allele frequency: 1.96078431372549e-2
allele num: 510
num of homozygotes: 0

Latino
type: Population
allele count: 230
allele frequency: 4.052149400986611e-2
allele num: 5676
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1467
allele frequency: 3.837501307941823e-2
allele num: 38228
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.11e-1

DP
type: SiteQuality
SIO_000300: 2.702873e6

MQ
type: SiteQuality
SIO_000300: 5.91e1

VQSLOD
type: SiteQuality
SIO_000300: 2.08e0

QD
type: SiteQuality
SIO_000300: 2.88e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.909999999999999e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.481e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.11e-1

GenotypeQuality
all individuals: 2371
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 860
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2357
bin: 3.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1477
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2127
bin: 3.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1267
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1705
bin: 6.25e1
variant carriers: 5

GenotypeQuality
all individuals: 957
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1265
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1077
bin: 8.25e1
variant carriers: 4

GenotypeQuality
all individuals: 1660
bin: 4.75e1
variant carriers: 4

European (Non-Finnish)
type: Population
allele count: 73
allele frequency: 1.909595061211677e-3
allele num: 38228
num of homozygotes: 1

South Asian
type: Population
allele count: 20
allele frequency: 2.420721374969741e-3
allele num: 8262
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 8.190008190008191e-4
allele num: 4884
num of homozygotes: 0

African
type: Population
allele count: 13
allele frequency: 2.532138683287885e-3
allele num: 5134
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 1.233262861169838e-3
allele num: 5676
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 1.411631846414455e-3
allele num: 3542
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 3.92156862745098e-3
allele num: 510
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.88e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.481e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.702873e6

MQRankSum
type: SiteQuality
SIO_000300: -8.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.11e-1

MQ
type: SiteQuality
SIO_000300: 5.91e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.909999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.11e-1

European (Finnish)
type: Population
allele count: 4
allele frequency: 1.129305477131564e-3
allele num: 3542
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 3.92156862745098e-3
allele num: 510
num of homozygotes: 0

South Asian
type: Population
allele count: 68
allele frequency: 8.23045267489712e-3
allele num: 8262
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.08e0

DP
type: SiteQuality
SIO_000300: 2.702873e6

QD
type: SiteQuality
SIO_000300: 2.88e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.11e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -8.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.11e-1

MQ
type: SiteQuality
SIO_000300: 5.91e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.481e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.909999999999999e-1

GenotypeQuality
all individuals: 915
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2452
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11823
bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 2317
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1281
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3712
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 919
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4427
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1696
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 6
allele frequency: 6.965405154399814e-4
allele num: 8614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6276
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4106
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 490
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6358
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 1.228124040528093e-4
allele num: 32570
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.989e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.261e0

QD
type: SiteQuality
SIO_000300: 3.77e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.710000000000001e-2

MQ
type: SiteQuality
SIO_000300: 5.812e1

FS
type: SiteQuality
SIO_000300: 7.37e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.45e-1

DP
type: SiteQuality
SIO_000300: 2.75454e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e0

GenotypeQuality
all individuals: 59
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3003
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25258
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3635
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1398
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1826
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9710
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503262078710802e-5
allele num: 66522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.78e-1

DP
type: SiteQuality
SIO_000300: 3.682153e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.85e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.91e-1

QD
type: SiteQuality
SIO_000300: 1.45e0

MQ
type: SiteQuality
SIO_000300: 5.713e1

VQSLOD
type: SiteQuality
SIO_000300: -1.869e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.436e0

GenotypeQuality
all individuals: 1823
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3052
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3656
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9681
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25827
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2703
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9118
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9692
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504664459825459e-5
allele num: 66460
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

DP
type: SiteQuality
SIO_000300: 3.681536e6

FS
type: SiteQuality
SIO_000300: 3.0271e1

QD
type: SiteQuality
SIO_000300: 1.289e1

VQSLOD
type: SiteQuality
SIO_000300: -5.249e0

MQ
type: SiteQuality
SIO_000300: 5.799e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.13e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.44e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.09e-1

GenotypeQuality
all individuals: 5845
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 890
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32420
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1082
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 707
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1137
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1365
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 881
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 913
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1092
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 963
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1299
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3724
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.071064430931761e-5
allele num: 32562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3090
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3270
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2848
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3210
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 372
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.74e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.49e-1

MQ
type: SiteQuality
SIO_000300: 5.769e1

DP
type: SiteQuality
SIO_000300: 2.983285e6

QD
type: SiteQuality
SIO_000300: 1.05e0

VQSLOD
type: SiteQuality
SIO_000300: -5.068e1

MQRankSum
type: SiteQuality
SIO_000300: -2.16e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.747e0

FS
type: SiteQuality
SIO_000300: 1.05158e2

GenotypeQuality
all individuals: 1012
bin: 3.75e1
variant carriers: 49

GenotypeQuality
all individuals: 1087
bin: 1.75e1
variant carriers: 63

GenotypeQuality
all individuals: 1119
bin: 8.25e1
variant carriers: 29

GenotypeQuality
all individuals: 1883
bin: 6.75e1
variant carriers: 28

GenotypeQuality
all individuals: 1134
bin: 7.5e0
variant carriers: 62

GenotypeQuality
all individuals: 707
bin: 8.75e1
variant carriers: 23

GenotypeQuality
all individuals: 32420
bin: 2.5e0
variant carriers: 47

GenotypeQuality
all individuals: 3415
bin: 6.25e1
variant carriers: 29

GenotypeQuality
all individuals: 1299
bin: 7.75e1
variant carriers: 25

GenotypeQuality
all individuals: 1365
bin: 2.25e1
variant carriers: 71

GenotypeQuality
all individuals: 1137
bin: 7.25e1
variant carriers: 33

GenotypeQuality
all individuals: 913
bin: 5.25e1
variant carriers: 47

Other
type: Population
allele count: 10
allele frequency: 2.688172043010753e-2
allele num: 372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 230
allele frequency: 8.075842696629214e-2
allele num: 2848
num of homozygotes: 0

South Asian
type: Population
allele count: 109
allele frequency: 2.926960257787325e-2
allele num: 3724
num of homozygotes: 0

East Asian
type: Population
allele count: 80
allele frequency: 2.588996763754045e-2
allele num: 3090
num of homozygotes: 0

Latino
type: Population
allele count: 62
allele frequency: 1.896024464831804e-2
allele num: 3270
num of homozygotes: 0

African
type: Population
allele count: 50
allele frequency: 1.557632398753894e-2
allele num: 3210
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 328
allele frequency: 1.007309133345618e-2
allele num: 32562
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.05158e2

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.74e-2

MQ
type: SiteQuality
SIO_000300: 5.769e1

VQSLOD
type: SiteQuality
SIO_000300: -5.068e1

MQRankSum
type: SiteQuality
SIO_000300: -2.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.747e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.94e-1

DP
type: SiteQuality
SIO_000300: 2.983285e6

QD
type: SiteQuality
SIO_000300: 1.05e0

GenotypeQuality
all individuals: 2752
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1121
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5214
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 982
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1136
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3161
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3012
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1202
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22797
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2369
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.639451767329005e-5
allele num: 60996
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10320
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8126
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.470355731225296e-4
allele num: 8096
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13870
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5822
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.231e1

FS
type: SiteQuality
SIO_000300: 6.6851e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.628e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.08e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.602e0

DP
type: SiteQuality
SIO_000300: 2.99269e6

MQ
type: SiteQuality
SIO_000300: 5.625e1

QD
type: SiteQuality
SIO_000300: 6.24e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.48e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.93e-2

GenotypeQuality
all individuals: 106
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4468
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 4.75e1
variant carriers: 1

East Asian
type: Population
allele count: 2
allele frequency: 2.329373398555789e-4
allele num: 8586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508705229172324e-5
allele num: 66282
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.758e0

MQRankSum
type: SiteQuality
SIO_000300: -2.547e0

DP
type: SiteQuality
SIO_000300: 2.99301e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.418e0

FS
type: SiteQuality
SIO_000300: 1.1761e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

MQ
type: SiteQuality
SIO_000300: 5.723e1

VQSLOD
type: SiteQuality
SIO_000300: -3.577e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.56e0

QD
type: SiteQuality
SIO_000300: 7.1e0

GenotypeQuality
all individuals: 122
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 435

GenotypeQuality
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GenotypeQuality
all individuals: 3986
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.346314325452017e-4
allele num: 11504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66388
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.036484245439469e-4
allele num: 9648
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.237136465324385e-3
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 445
allele frequency: 2.707471404234607e-2
allele num: 16436
num of homozygotes: 15

East Asian
type: Population
allele count: 1
allele frequency: 1.162520344106022e-4
allele num: 8602
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.58e-2

DP
type: SiteQuality
SIO_000300: 2.996353e6

QD
type: SiteQuality
SIO_000300: 1.531e1

FS
type: SiteQuality
SIO_000300: 7.02e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.05e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.98e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.865e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.84e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.0e-2

MQ
type: SiteQuality
SIO_000300: 5.635e1

GenotypeQuality
all individuals: 243
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66368
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9670
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.487561032318065e-4
allele num: 8602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6072
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.99e-1

MQ
type: SiteQuality
SIO_000300: 5.732e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.494e0

QD
type: SiteQuality
SIO_000300: 2.357e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.085e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

DP
type: SiteQuality
SIO_000300: 2.996909e6

GenotypeQuality
all individuals: 117
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 70
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 80
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 29191
bin: 9.75e1
variant carriers: 3

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9664
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.019597185735423e-5
allele num: 66234
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.215214485356665e-4
allele num: 16458
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.004049e6

MQRankSum
type: SiteQuality
SIO_000300: -5.53e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.119e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.73e-1

MQ
type: SiteQuality
SIO_000300: 5.839e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

QD
type: SiteQuality
SIO_000300: 8.17e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.51e-1

GenotypeQuality
all individuals: 41
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504438092372499e-5
allele num: 66470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9672
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.112e0

QD
type: SiteQuality
SIO_000300: 5.77e0

MQRankSum
type: SiteQuality
SIO_000300: -5.258e0

DP
type: SiteQuality
SIO_000300: 3.00513e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.999999999999999e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.907e0

VQSLOD
type: SiteQuality
SIO_000300: 1.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

MQ
type: SiteQuality
SIO_000300: 5.177e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.66e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162520344106022e-4
allele num: 8602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9672
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66470
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.999999999999999e-3

DP
type: SiteQuality
SIO_000300: 3.00513e6

MQ
type: SiteQuality
SIO_000300: 5.177e1

MQRankSum
type: SiteQuality
SIO_000300: -5.258e0

FS
type: SiteQuality
SIO_000300: 1.112e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.907e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 9.66e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.32e0

QD
type: SiteQuality
SIO_000300: 5.77e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4720
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9672
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66458
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.652244708071644e-4
allele num: 8598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

DP
type: SiteQuality
SIO_000300: 3.005414e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e-1

MQ
type: SiteQuality
SIO_000300: 5.77e1

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -5.639999999999999e-1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 7.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.19e-1

QD
type: SiteQuality
SIO_000300: 1.158e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504619180885318e-5
allele num: 66462
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9676
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.5099e1

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.728e1

DP
type: SiteQuality
SIO_000300: 3.00574e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.172e0

BaseQRankSum
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SIO_000300: 5.71e0

QD
type: SiteQuality
SIO_000300: 1.161e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504347564461293e-5
allele num: 66474
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9676
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.054e0

QD
type: SiteQuality
SIO_000300: 8.82e0

FS
type: SiteQuality
SIO_000300: 3.908e0

VQSLOD
type: SiteQuality
SIO_000300: -1.92e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQ
type: SiteQuality
SIO_000300: 5.844e1

DP
type: SiteQuality
SIO_000300: 3.006057e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.054e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9678
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.008785654110001e-5
allele num: 66472
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.006357e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 1.186e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.54e0

VQSLOD
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SIO_000300: -1.366e0

MQ
type: SiteQuality
SIO_000300: 5.727e1

QD
type: SiteQuality
SIO_000300: 9.59e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 2
allele frequency: 2.325040688212044e-4
allele num: 8602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9676
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504392827055001e-5
allele num: 66472
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.96e0

MQ
type: SiteQuality
SIO_000300: 5.771e1

QD
type: SiteQuality
SIO_000300: 1.235e1

VQSLOD
type: SiteQuality
SIO_000300: -1.379e0

MQRankSum
type: SiteQuality
SIO_000300: 4.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.12e-1

FS
type: SiteQuality
SIO_000300: 4.945e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

DP
type: SiteQuality
SIO_000300: 3.009885e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.81e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9688
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66490
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.677542519958348e-5
allele num: 11524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.99e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.62e0

QD
type: SiteQuality
SIO_000300: 9.300000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

DP
type: SiteQuality
SIO_000300: 3.005959e6

VQSLOD
type: SiteQuality
SIO_000300: -2.038e0

FS
type: SiteQuality
SIO_000300: 2.283e0

MQ
type: SiteQuality
SIO_000300: 5.799e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.09e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9684
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503895088278642e-5
allele num: 66494
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.14e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.734e0

QD
type: SiteQuality
SIO_000300: 1.372e1

MQ
type: SiteQuality
SIO_000300: 5.744e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.38e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.39e-1

DP
type: SiteQuality
SIO_000300: 3.00543e6

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3761
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503759398496241e-5
allele num: 66500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9686
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.15e-1

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 4.11e-1

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.642e1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 8.208e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

DP
type: SiteQuality
SIO_000300: 3.005484e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.724e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503849855630414e-5
allele num: 66496
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.007e0

MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
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SIO_000300: 5.321e1

QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 1.821051353648173e-4
allele num: 16474
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66498
num of homozygotes: 0

QD
type: SiteQuality
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MQ
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DP
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MQRankSum
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FS
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
type: SiteQuality
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VQSLOD
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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bin: 8.25e1
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 3.035085589413621e-4
allele num: 16474
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.503940323647958e-5
allele num: 66492
num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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DP
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MQ
type: SiteQuality
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QD
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ClippingRankSum
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BaseQRankSum
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503849855630414e-5
allele num: 66496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9692
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.005973e6

MQRankSum
type: SiteQuality
SIO_000300: -3.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.451e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.753e1

FS
type: SiteQuality
SIO_000300: 6.582e0

VQSLOD
type: SiteQuality
SIO_000300: -1.541e0

QD
type: SiteQuality
SIO_000300: 8.5e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.908e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3758
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3181
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9690
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503804625703029e-5
allele num: 66498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.366e0

VQSLOD
type: SiteQuality
SIO_000300: -6.34e-1

DP
type: SiteQuality
SIO_000300: 3.005258e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.6e-2

MQ
type: SiteQuality
SIO_000300: 5.39e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.1e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.817e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

QD
type: SiteQuality
SIO_000300: 1.17e0

GenotypeQuality
all individuals: 4100
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 146

GenotypeQuality
all individuals: 65
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 3
allele frequency: 3.348214285714286e-3
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 23
allele frequency: 3.458334586353111e-4
allele num: 66506
num of homozygotes: 0

African
type: Population
allele count: 103
allele frequency: 1.062951496388029e-2
allele num: 9690
num of homozygotes: 0

Latino
type: Population
allele count: 15
allele frequency: 1.300728407908429e-3
allele num: 11532
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.068697657482704e-5
allele num: 16478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.295e0

FS
type: SiteQuality
SIO_000300: 5.32e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.75e-2

QD
type: SiteQuality
SIO_000300: 1.237e1

DP
type: SiteQuality
SIO_000300: 3.013224e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.42e-1

MQ
type: SiteQuality
SIO_000300: 5.806e1

MQRankSum
type: SiteQuality
SIO_000300: 5.600000000000001e-1

GenotypeQuality
all individuals: 4216
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3754
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3175
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variant carriers: 0

GenotypeQuality
all individuals: 29753
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 1.031353135313531e-4
allele num: 9696
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.72e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.888e0

DP
type: SiteQuality
SIO_000300: 3.008647e6

QD
type: SiteQuality
SIO_000300: 8.01e0

MQ
type: SiteQuality
SIO_000300: 5.631e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -6.3e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.24e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.026e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.654e0

GenotypeQuality
all individuals: 3754
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 313
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variant carriers: 0

GenotypeQuality
all individuals: 80
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variant carriers: 0

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 6483
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variant carriers: 0

GenotypeQuality
all individuals: 51
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variant carriers: 0

GenotypeQuality
all individuals: 3175
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4104
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29753
bin: 9.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.670019074041963e-5
allele num: 11534
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66514
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.031778786628147e-4
allele num: 9692
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.166e0

FS
type: SiteQuality
SIO_000300: 4.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

QD
type: SiteQuality
SIO_000300: 1.227e1

MQRankSum
type: SiteQuality
SIO_000300: -5.27e-1

DP
type: SiteQuality
SIO_000300: 3.008604e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

MQ
type: SiteQuality
SIO_000300: 5.821e1

VQSLOD
type: SiteQuality
SIO_000300: -1.902e0

GenotypeQuality
all individuals: 70
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 29754
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4104
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 52
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variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 6489
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variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 312
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variant carriers: 0

GenotypeQuality
all individuals: 4215
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9694
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503533303262667e-5
allele num: 66510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e0

MQ
type: SiteQuality
SIO_000300: 5.788e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

FS
type: SiteQuality
SIO_000300: 6.711e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.05e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

DP
type: SiteQuality
SIO_000300: 3.008647e6

VQSLOD
type: SiteQuality
SIO_000300: -1.805e0

QD
type: SiteQuality
SIO_000300: 5.2e-1

GenotypeQuality
all individuals: 4714
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
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variant carriers: 0

GenotypeQuality
all individuals: 4217
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
all individuals: 3754
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.067224851352991e-5
allele num: 16482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9692
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.39e0

QD
type: SiteQuality
SIO_000300: 6.81e0

DP
type: SiteQuality
SIO_000300: 3.00853e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.407e0

MQ
type: SiteQuality
SIO_000300: 5.389e1

FS
type: SiteQuality
SIO_000300: 3.216e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.72e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 32
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3754
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503578516870151e-5
allele num: 66508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9700
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.47e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.086e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.826e0

QD
type: SiteQuality
SIO_000300: 8.42e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.58e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -5.17e-1

DP
type: SiteQuality
SIO_000300: 3.008396e6

MQ
type: SiteQuality
SIO_000300: 5.841e1

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 28
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3754
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.033612425676495e-4
allele num: 16482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9704
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

QD
type: SiteQuality
SIO_000300: 1.162e1

MQ
type: SiteQuality
SIO_000300: 5.657e1

VQSLOD
type: SiteQuality
SIO_000300: -1.753e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.16e0

DP
type: SiteQuality
SIO_000300: 3.008528e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.748e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.3e0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29751
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3175
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503352476021528e-5
allele num: 66518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9710
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.32e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.045e0

QD
type: SiteQuality
SIO_000300: 1.655e1

MQ
type: SiteQuality
SIO_000300: 5.606e1

DP
type: SiteQuality
SIO_000300: 3.00779e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.643e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

GenotypeQuality
all individuals: 131
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6293
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4686
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3754
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4210
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503397678753984e-5
allele num: 66516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9710
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.53e-1

FS
type: SiteQuality
SIO_000300: 1.465e0

MQ
type: SiteQuality
SIO_000300: 5.646e1

DP
type: SiteQuality
SIO_000300: 3.007442e6

MQRankSum
type: SiteQuality
SIO_000300: -1.165e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

VQSLOD
type: SiteQuality
SIO_000300: -1.073e0

QD
type: SiteQuality
SIO_000300: 1.404e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.95e0

GenotypeQuality
all individuals: 29751
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 87
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4106
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4665
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6158
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3519
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3175
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.670019074041963e-5
allele num: 11534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9710
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.141e-1

MQ
type: SiteQuality
SIO_000300: 5.917e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.73e0

QD
type: SiteQuality
SIO_000300: 1.417e1

DP
type: SiteQuality
SIO_000300: 3.007083e6

FS
type: SiteQuality
SIO_000300: 3.849e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.473e0

GenotypeQuality
all individuals: 181
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4626
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2033
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10576
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1908
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 955
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29396
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2215
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14028
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521699433927811e-5
allele num: 65716
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9766
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.592424e6

VQSLOD
type: SiteQuality
SIO_000300: -2.057e0

FS
type: SiteQuality
SIO_000300: 1.394e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.71e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.6e-2

MQRankSum
type: SiteQuality
SIO_000300: -8.86e-1

MQ
type: SiteQuality
SIO_000300: 5.937e1

QD
type: SiteQuality
SIO_000300: 9.48e0

GenotypeQuality
all individuals: 2198
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29384
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 787
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1899
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1282
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 937
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10626
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2029
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 472
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9760
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.522858100082234e-5
allele num: 65666
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13856
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e-1

DP
type: SiteQuality
SIO_000300: 2.592817e6

MQRankSum
type: SiteQuality
SIO_000300: 7.76e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

FS
type: SiteQuality
SIO_000300: 4.261e0

VQSLOD
type: SiteQuality
SIO_000300: 1.31e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.52e-1

GenotypeQuality
all individuals: 2198
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29384
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 362
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10626
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1249
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2611
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1899
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 937
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9760
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.732201628269531e-4
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65666
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.886836027713626e-4
allele num: 13856
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

FS
type: SiteQuality
SIO_000300: 4.261e0

MQRankSum
type: SiteQuality
SIO_000300: 7.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.31e0

DP
type: SiteQuality
SIO_000300: 2.592817e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.15e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.52e-1