19-40542366-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40542366
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40542366
    reference: chr 19
allele count: 1
allele frequency: 8.740341922175995e-6
allele num: 114412
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128000
  ensembl protein: ENSP00000391641
  ensembl transcript: ENST00000434248
  gene symbol: ZNF780B
  hgvsc: ENST00000434248.1:c.400C>T
  hgvsp: ENSP00000391641.1:p.His134Tyr
  variant of: http://identifiers.org/hgnc/33109
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128000
  ensembl protein: ENSP00000221355
  ensembl transcript: ENST00000221355
  gene symbol: ZNF780B
  hgvsc: ENST00000221355.6:c.-45C>T
  variant of: http://identifiers.org/hgnc/33109
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18074
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3085
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29428
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3200
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5141
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 826
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1245
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1029
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42203
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4017
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1754
  bin: 9.75e1
  variant carriers: 1
hgvs: p.His134Tyr
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6456
  num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

19-40542371-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40542371
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40542371
    reference: chr 19
allele count: 1
allele frequency: 8.7470697316399e-6
allele num: 114324
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128000
  ensembl protein: ENSP00000391641
  ensembl transcript: ENST00000434248
  gene symbol: ZNF780B
  hgvsc: ENST00000434248.1:c.395A>G
  hgvsp: ENSP00000391641.1:p.Gln132Arg
  variant of: http://identifiers.org/hgnc/33109
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128000
  ensembl protein: ENSP00000221355
  ensembl transcript: ENST00000221355
  gene symbol: ZNF780B
  hgvsc: ENST00000221355.6:c.-50A>G
  variant of: http://identifiers.org/hgnc/33109
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2871
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3135
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29684
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3014
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18086
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5200
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43935
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3987
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1754
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gln132Arg
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10638
  num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

19-40542374-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40542374
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40542374
    reference: chr 19
allele count: 2
allele frequency: 1.767002986235047e-5
allele num: 113186
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128000
  ensembl protein: ENSP00000221355
  ensembl transcript: ENST00000221355
  gene symbol: ZNF780B
  hgvsc: ENST00000221355.6:c.-53G>A
  variant of: http://identifiers.org/hgnc/33109
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128000
  ensembl protein: ENSP00000391641
  ensembl transcript: ENST00000434248
  gene symbol: ZNF780B
  hgvsc: ENST00000434248.1:c.392G>A
  hgvsp: ENSP00000391641.1:p.Arg131Gln
  variant of: http://identifiers.org/hgnc/33109
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29247
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2908
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3295
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17496
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3641
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3916
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 1755
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5998
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 659
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 249
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 551
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 42592
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 802
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genotype quality: GenotypeQuality
  all individuals: 546
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg131Gln
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6422
  num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD

19-40542375-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40542375
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40542375
    reference: chr 19
allele count: 7
allele frequency: 6.201605329836809e-5
allele num: 112874
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128000
  ensembl protein: ENSP00000221355
  ensembl transcript: ENST00000221355
  gene symbol: ZNF780B
  hgvsc: ENST00000221355.6:c.-54C>T
  variant of: http://identifiers.org/hgnc/33109
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000128000
  ensembl protein: ENSP00000391641
  ensembl transcript: ENST00000434248
  gene symbol: ZNF780B
  hgvsc: ENST00000434248.1:c.391C>T
  hgvsp: ENSP00000391641.1:p.Arg131Ter
  variant of: http://identifiers.org/hgnc/33109
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29112
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3409
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3786
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17396
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2842
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6227
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3878
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 678
  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 341
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg131Ter
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 1.616971735334066e-5
  allele num: 61844
  num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ

19-40542382-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40542382
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40542382
    reference: chr 19
allele count: 1
allele frequency: 9.057642839027572e-6
allele num: 110404
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128000
  ensembl protein: ENSP00000221355
  ensembl transcript: ENST00000221355
  gene symbol: ZNF780B
  hgvsc: ENST00000221355.6:c.-61T>C
  variant of: http://identifiers.org/hgnc/33109
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128000
  ensembl protein: ENSP00000391641
  ensembl transcript: ENST00000434248
  gene symbol: ZNF780B
  hgvsc: ENST00000434248.1:c.384T>C
  hgvsp: ENST00000434248.1:c.384T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/33109
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.5e0
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genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
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  bin: 7.25e1
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genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 289
  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Phe128Phe
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 1.657495193263939e-5
  allele num: 60332
  num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD

19-40542386-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40542386
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40542386
    reference: chr 19
allele count: 4
allele frequency: 3.679649697348812e-5
allele num: 108706
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128000
  ensembl protein: ENSP00000221355
  ensembl transcript: ENST00000221355
  gene symbol: ZNF780B
  hgvsc: ENST00000221355.6:c.-65G>C
  variant of: http://identifiers.org/hgnc/33109
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128000
  ensembl protein: ENSP00000391641
  ensembl transcript: ENST00000434248
  gene symbol: ZNF780B
  hgvsc: ENST00000434248.1:c.380G>C
  hgvsp: ENSP00000391641.1:p.Arg127Thr
  variant of: http://identifiers.org/hgnc/33109
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5298
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.75e1
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genotype depth: GenotypeDepth
  all individuals: 287
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 824
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  variant carriers: 0
hgvs: p.Arg127Thr
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 15606
  num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD

19-40542393-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40542393
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40542393
    reference: chr 19
allele count: 2
allele frequency: 1.891682273045419e-5
allele num: 105726
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128000
  ensembl protein: ENSP00000221355
  ensembl transcript: ENST00000221355
  gene symbol: ZNF780B
  hgvsc: ENST00000221355.6:c.-72A>G
  variant of: http://identifiers.org/hgnc/33109
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128000
  ensembl protein: ENSP00000391641
  ensembl transcript: ENST00000434248
  gene symbol: ZNF780B
  hgvsc: ENST00000434248.1:c.373A>G
  hgvsp: ENSP00000391641.1:p.Arg125Gly
  variant of: http://identifiers.org/hgnc/33109
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Arg125Gly
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7386
  num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
reference allele: T
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum

19-40542399-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40542399
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40542399
    reference: chr 19
allele count: 2
allele frequency: 1.947192148921256e-5
allele num: 102712
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128000
  ensembl protein: ENSP00000221355
  ensembl transcript: ENST00000221355
  gene symbol: ZNF780B
  hgvsc: ENST00000221355.6:c.-78G>A
  variant of: http://identifiers.org/hgnc/33109
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128000
  ensembl protein: ENSP00000391641
  ensembl transcript: ENST00000434248
  gene symbol: ZNF780B
  hgvsc: ENST00000434248.1:c.367G>A
  hgvsp: ENSP00000391641.1:p.Glu123Lys
  variant of: http://identifiers.org/hgnc/33109
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23131
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2842
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  variant carriers: 0
hgvs: p.Glu123Lys
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 800
  num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

19-40542400-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40542400
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40542400
    reference: chr 19
allele count: 1
allele frequency: 9.790291946505844e-6
allele num: 102142
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128000
  ensembl protein: ENSP00000391641
  ensembl transcript: ENST00000434248
  gene symbol: ZNF780B
  hgvsc: ENST00000434248.1:c.366A>G
  hgvsp: ENST00000434248.1:c.366A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/33109
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128000
  ensembl protein: ENSP00000221355
  ensembl transcript: ENST00000221355
  gene symbol: ZNF780B
  hgvsc: ENST00000221355.6:c.-79A>G
  variant of: http://identifiers.org/hgnc/33109
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2746
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 928
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1752
  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32780
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser122Ser
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6062
  num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/19-40542415-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40542415
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40542415
    reference: chr 19
allele count: 1
allele frequency: 1.068033749866496e-5
allele num: 93630
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128000
  ensembl protein: ENSP00000221355
  ensembl transcript: ENST00000221355
  gene symbol: ZNF780B
  hgvsc: ENST00000221355.6:c.-94T>G
  variant of: http://identifiers.org/hgnc/33109
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000128000
  ensembl protein: ENSP00000391641
  ensembl transcript: ENST00000434248
  gene symbol: ZNF780B
  hgvsc: ENST00000434248.1:c.351T>G
  hgvsp: ENSP00000391641.1:p.Tyr117Ter
  variant of: http://identifiers.org/hgnc/33109
canonical: true
consequence: stop gained
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11702
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
  all individuals: 355
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3322
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1976
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 636
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 515
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 1923
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1287
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 319
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2035
  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2488
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Tyr117Ter
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 746
  num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

19-40542416-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40542416
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40542416
    reference: chr 19
allele count: 1
allele frequency: 1.086909264814573e-5
allele num: 92004
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128000
  ensembl protein: ENSP00000221355
  ensembl transcript: ENST00000221355
  gene symbol: ZNF780B
  hgvsc: ENST00000221355.6:c.-95A>G
  variant of: http://identifiers.org/hgnc/33109
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128000
  ensembl protein: ENSP00000391641
  ensembl transcript: ENST00000434248
  gene symbol: ZNF780B
  hgvsc: ENST00000434248.1:c.350A>G
  hgvsp: ENSP00000391641.1:p.Tyr117Cys
  variant of: http://identifiers.org/hgnc/33109
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3446
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2374
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 2080
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Tyr117Cys
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8456
  num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD

19-40542419-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40542419
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40542419
    reference: chr 19
allele count: 6
allele frequency: 6.688366700851652e-5
allele num: 89708
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128000
  ensembl protein: ENSP00000221355
  ensembl transcript: ENST00000221355
  gene symbol: ZNF780B
  hgvsc: ENST00000221355.6:c.-98T>C
  variant of: http://identifiers.org/hgnc/33109
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128000
  ensembl protein: ENSP00000391641
  ensembl transcript: ENST00000434248
  gene symbol: ZNF780B
  hgvsc: ENST00000434248.1:c.347T>C
  hgvsp: ENSP00000391641.1:p.Phe116Ser
  variant of: http://identifiers.org/hgnc/33109
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14163
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1851
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1115
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3539
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
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genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 268
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2289
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Phe116Ser
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 710
  num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

19-40542421-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40542421
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40542421
    reference: chr 19
allele count: 1
allele frequency: 1.146683790477938e-5
allele num: 87208
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128000
  ensembl protein: ENSP00000391641
  ensembl transcript: ENST00000434248
  gene symbol: ZNF780B
  hgvsc: ENST00000434248.1:c.345C>G
  hgvsp: ENST00000434248.1:c.345C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/33109
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128000
  ensembl protein: ENSP00000221355
  ensembl transcript: ENST00000221355
  gene symbol: ZNF780B
  hgvsc: ENST00000221355.6:c.-100C>G
  variant of: http://identifiers.org/hgnc/33109
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 7.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1978
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1452
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2317
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 919
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21922
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 878
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1748
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala115Ala
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5444
  num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

19-40542426-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40542426
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40542426
    reference: chr 19
allele count: 159
allele frequency: 1.87407180405931e-3
allele num: 84842
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128000
  ensembl protein: ENSP00000391641
  ensembl transcript: ENST00000434248
  gene symbol: ZNF780B
  hgvsc: ENST00000434248.1:c.340G>A
  hgvsp: ENSP00000391641.1:p.Glu114Lys
  variant of: http://identifiers.org/hgnc/33109
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128000
  ensembl protein: ENSP00000221355
  ensembl transcript: ENST00000221355
  gene symbol: ZNF780B
  hgvsc: ENST00000221355.6:c.-105G>A
  variant of: http://identifiers.org/hgnc/33109
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 11669
  bin: 1.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14462
  bin: 2.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9514
  bin: 2.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 16035
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3460
  bin: 1.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22994
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 954
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1563
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 790
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2221
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2246
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1373
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20618
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1873
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1884
  bin: 9.75e1
  variant carriers: 155
hgvs: p.Glu114Lys
num of homozygotes: 1
population: Latino
  type: Population
  allele count: 7
  allele frequency: 1.121435437359821e-3
  allele num: 6242
  num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

19-40542427-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40542427
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40542427
    reference: chr 19
allele count: 6
allele frequency: 7.192692224699705e-5
allele num: 83418
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128000
  ensembl protein: ENSP00000391641
  ensembl transcript: ENST00000434248
  gene symbol: ZNF780B
  hgvsc: ENST00000434248.1:c.339C>T
  hgvsp: ENST00000434248.1:c.339C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/33109
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128000
  ensembl protein: ENSP00000221355
  ensembl transcript: ENST00000221355
  gene symbol: ZNF780B
  hgvsc: ENST00000221355.6:c.-106C>T
  variant of: http://identifiers.org/hgnc/33109
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11813
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9146
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16670
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3361
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14162
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1370
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1798
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1633
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 998
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2263
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23581
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1745
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 2227
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19780
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu113Leu
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6064
  num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/19-40542431-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40542431
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40542431
    reference: chr 19
allele count: 3
allele frequency: 3.662735330745e-5
allele num: 81906
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128000
  ensembl protein: ENSP00000221355
  ensembl transcript: ENST00000221355
  gene symbol: ZNF780B
  hgvsc: ENST00000221355.6:c.-110G>T
  variant of: http://identifiers.org/hgnc/33109
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128000
  ensembl protein: ENSP00000391641
  ensembl transcript: ENST00000434248
  gene symbol: ZNF780B
  hgvsc: ENST00000434248.1:c.335G>T
  hgvsp: ENSP00000391641.1:p.Gly112Val
  variant of: http://identifiers.org/hgnc/33109
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12051
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17538
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8660
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3079
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13817
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19678
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2218
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2202
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1710
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1740
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1309
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1741
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24753
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly112Val
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7644
  num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

19-40542435-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40542435
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40542435
    reference: chr 19
allele count: 2
allele frequency: 2.49719066050693e-5
allele num: 80090
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128000
  ensembl protein: ENSP00000221355
  ensembl transcript: ENST00000221355
  gene symbol: ZNF780B
  hgvsc: ENST00000221355.6:c.-114C>T
  variant of: http://identifiers.org/hgnc/33109
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128000
  ensembl protein: ENSP00000391641
  ensembl transcript: ENST00000434248
  gene symbol: ZNF780B
  hgvsc: ENST00000434248.1:c.331C>T
  hgvsp: ENSP00000391641.1:p.Leu111Phe
  variant of: http://identifiers.org/hgnc/33109
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8171
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13091
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1752
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18390
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3017
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1833
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2241
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1740
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1709
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu111Phe
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 2
  allele frequency: 4.73260766682442e-5
  allele num: 42260
  num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: African
population: East Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

19-40542436-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40542436
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40542436
    reference: chr 19
allele count: 19
allele frequency: 2.388434946574481e-4
allele num: 79550
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128000
  ensembl protein: ENSP00000391641
  ensembl transcript: ENST00000434248
  gene symbol: ZNF780B
  hgvsc: ENST00000434248.1:c.330A>C
  hgvsp: ENST00000434248.1:c.330A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/33109
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128000
  ensembl protein: ENSP00000221355
  ensembl transcript: ENST00000221355
  gene symbol: ZNF780B
  hgvsc: ENST00000221355.6:c.-115A>C
  variant of: http://identifiers.org/hgnc/33109
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12854
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3004
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18599
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12439
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8083
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2215
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1902
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1289
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2240
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1755
  bin: 9.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26033
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18690
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1701
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr110Thr
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 13212
  num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP

19-40542454-TATAAC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40542454
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40542449
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 70158
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128000
  ensembl protein: ENSP00000221355
  ensembl transcript: ENST00000221355
  gene symbol: ZNF780B
  hgvsc: ENST00000221355.6:c.-138_-134delGTTAT
  variant of: http://identifiers.org/hgnc/33109
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000128000
  ensembl protein: ENSP00000471726
  ensembl transcript: ENST00000595995
  gene symbol: ZNF780B
  hgvsc: ENST00000595995.1:c.307_311delGTTAT
  hgvsp: ENSP00000471726.1:p.Val103LysfsTer5
  variant of: http://identifiers.org/hgnc/33109
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000128000
  ensembl protein: ENSP00000471669
  ensembl transcript: ENST00000598845
  gene symbol: ZNF780B
  hgvsc: ENST00000598845.1:c.*15_*19delGTTAT
  variant of: http://identifiers.org/hgnc/33109
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000128000
  ensembl protein: ENSP00000391641
  ensembl transcript: ENST00000434248
  gene symbol: ZNF780B
  hgvsc: ENST00000434248.1:c.307_311delGTTAT
  hgvsp: ENSP00000391641.1:p.Val103LysfsTer5
  variant of: http://identifiers.org/hgnc/33109
canonical: true
consequence: frameshift
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9329
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6231
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13343
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2657
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22365
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2949
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29370
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2766
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13556
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1249
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1736
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1283
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1436
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2364
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val103LysfsTer5
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
reference allele: TATAAC
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum

19-40542461-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40542461
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40542461
    reference: chr 19
allele count: 6
allele frequency: 8.92803999761919e-5
allele num: 67204
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128000
  ensembl protein: ENSP00000221355
  ensembl transcript: ENST00000221355
  gene symbol: ZNF780B
  hgvsc: ENST00000221355.6:c.-140A>T
  variant of: http://identifiers.org/hgnc/33109
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128000
  ensembl protein: ENSP00000391641
  ensembl transcript: ENST00000434248
  gene symbol: ZNF780B
  hgvsc: ENST00000434248.1:c.305A>T
  hgvsp: ENSP00000391641.1:p.His102Leu
  variant of: http://identifiers.org/hgnc/33109
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000128000
  ensembl protein: ENSP00000471669
  ensembl transcript: ENST00000598845
  gene symbol: ZNF780B
  hgvsc: ENST00000598845.1:c.*13A>T
  variant of: http://identifiers.org/hgnc/33109
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128000
  ensembl protein: ENSP00000471726
  ensembl transcript: ENST00000595995
  gene symbol: ZNF780B
  hgvsc: ENST00000595995.1:c.305A>T
  hgvsp: ENSP00000471726.1:p.His102Leu
  variant of: http://identifiers.org/hgnc/33109
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23542
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13442
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8374
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2850
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2983
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5729
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 966
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1225
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3105
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1407
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30509
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2184
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2352
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12523
  bin: 6.25e1
  variant carriers: 0
hgvs: p.His102Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

19-40542466-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40542466
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40542466
    reference: chr 19
allele count: 1
allele frequency: 1.554388037429664e-5
allele num: 64334
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128000
  ensembl protein: ENSP00000471726
  ensembl transcript: ENST00000595995
  gene symbol: ZNF780B
  hgvsc: ENST00000595995.1:c.300C>A
  hgvsp: ENST00000595995.1:c.300C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/33109
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000128000
  ensembl protein: ENSP00000471669
  ensembl transcript: ENST00000598845
  gene symbol: ZNF780B
  hgvsc: ENST00000598845.1:c.*8C>A
  variant of: http://identifiers.org/hgnc/33109
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128000
  ensembl protein: ENSP00000221355
  ensembl transcript: ENST00000221355
  gene symbol: ZNF780B
  hgvsc: ENST00000221355.6:c.-145C>A
  variant of: http://identifiers.org/hgnc/33109
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128000
  ensembl protein: ENSP00000391641
  ensembl transcript: ENST00000434248
  gene symbol: ZNF780B
  hgvsc: ENST00000434248.1:c.300C>A
  hgvsp: ENST00000434248.1:c.300C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/33109
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7662
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13408
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3314
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2848
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24425
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5319
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1077
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1208
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2290
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2119
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3474
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11279
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1027
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1738
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1735
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Pro100Pro
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff

16-4476141-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4476141
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4476141
    reference: chr 16
allele count: 9
allele frequency: 1.86312259346665e-4
allele num: 48306
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000393970
  ensembl transcript: ENST00000431375
  gene symbol: DNAJA3
  hgvsc: ENST00000431375.2:c.101+48A>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572974
  gene symbol: DNAJA3
  hgvsc: ENST00000572974.1:n.225+48A>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459098
  ensembl transcript: ENST00000576911
  gene symbol: DNAJA3
  hgvsc: ENST00000576911.1:c.211+48A>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459088
  ensembl transcript: ENST00000574895
  gene symbol: DNAJA3
  hgvsc: ENST00000574895.1:c.211+48A>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000458868
  ensembl transcript: ENST00000575106
  gene symbol: DNAJA3
  hgvsc: ENST00000575106.1:c.211+48A>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000460358
  ensembl transcript: ENST00000570857
  gene symbol: DNAJA3
  hgvsc: ENST00000570857.1:c.211+48A>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000347445
  ensembl transcript: ENST00000355296
  gene symbol: DNAJA3
  hgvsc: ENST00000355296.4:c.211+48A>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000262375
  ensembl transcript: ENST00000262375
  gene symbol: DNAJA3
  hgvsc: ENST00000262375.6:c.211+48A>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000573120
  gene symbol: DNAJA3
  hgvsc: ENST00000573120.1:n.45+48A>G
  variant of: http://identifiers.org/hgnc/11808
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7986
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4263
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27719
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17422
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

16-4476142-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4476142
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4476142
    reference: chr 16
allele count: 573
allele frequency: 1.205503660691744e-2
allele num: 47532
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000393970
  ensembl transcript: ENST00000431375
  gene symbol: DNAJA3
  hgvsc: ENST00000431375.2:c.101+49G>A
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000460358
  ensembl transcript: ENST00000570857
  gene symbol: DNAJA3
  hgvsc: ENST00000570857.1:c.211+49G>A
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000573120
  gene symbol: DNAJA3
  hgvsc: ENST00000573120.1:n.45+49G>A
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572974
  gene symbol: DNAJA3
  hgvsc: ENST00000572974.1:n.225+49G>A
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459098
  ensembl transcript: ENST00000576911
  gene symbol: DNAJA3
  hgvsc: ENST00000576911.1:c.211+49G>A
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000347445
  ensembl transcript: ENST00000355296
  gene symbol: DNAJA3
  hgvsc: ENST00000355296.4:c.211+49G>A
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000458868
  ensembl transcript: ENST00000575106
  gene symbol: DNAJA3
  hgvsc: ENST00000575106.1:c.211+49G>A
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000262375
  ensembl transcript: ENST00000262375
  gene symbol: DNAJA3
  hgvsc: ENST00000262375.6:c.211+49G>A
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459088
  ensembl transcript: ENST00000574895
  gene symbol: DNAJA3
  hgvsc: ENST00000574895.1:c.211+49G>A
  variant of: http://identifiers.org/hgnc/11808
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7940
  bin: 2.5e0
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 4262
  bin: 1.75e1
  variant carriers: 102
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17296
  bin: 1.25e1
  variant carriers: 334
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 2.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 27858
  bin: 7.5e0
  variant carriers: 395
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1345
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 4.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 4842
  bin: 2.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.75e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 7.75e1
  variant carriers: 20
num of homozygotes: 30
population: Other
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ

16-4481584-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4481584
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4481585
    reference: chr 16
allele count: 0
allele frequency: NaN
allele num: 0
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459098
  ensembl transcript: ENST00000576911
  gene symbol: DNAJA3
  hgvsc: ENST00000576911.1:c.211+5503dupT
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459088
  ensembl transcript: ENST00000574895
  gene symbol: DNAJA3
  hgvsc: ENST00000574895.1:c.212-2789dupT
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000573120
  gene symbol: DNAJA3
  hgvsc: ENST00000573120.1:n.46-2789dupT
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000458868
  ensembl transcript: ENST00000575106
  gene symbol: DNAJA3
  hgvsc: ENST00000575106.1:c.212-4dupT
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000347445
  ensembl transcript: ENST00000355296
  gene symbol: DNAJA3
  hgvsc: ENST00000355296.4:c.212-2789dupT
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000393970
  ensembl transcript: ENST00000431375
  gene symbol: DNAJA3
  hgvsc: ENST00000431375.2:c.101+5503dupT
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000262375
  ensembl transcript: ENST00000262375
  gene symbol: DNAJA3
  hgvsc: ENST00000262375.6:c.212-2789dupT
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572974
  gene symbol: DNAJA3
  hgvsc: ENST00000572974.1:n.226-4dupT
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000460358
  ensembl transcript: ENST00000570857
  gene symbol: DNAJA3
  hgvsc: ENST00000570857.1:c.211+5503dupT
  variant of: http://identifiers.org/hgnc/11808
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

16-4481584-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4481584
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4481583
    reference: chr 16
allele count: 0
allele frequency: NaN
allele num: 0
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459098
  ensembl transcript: ENST00000576911
  gene symbol: DNAJA3
  hgvsc: ENST00000576911.1:c.211+5503delT
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000262375
  ensembl transcript: ENST00000262375
  gene symbol: DNAJA3
  hgvsc: ENST00000262375.6:c.212-2789delT
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000347445
  ensembl transcript: ENST00000355296
  gene symbol: DNAJA3
  hgvsc: ENST00000355296.4:c.212-2789delT
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459088
  ensembl transcript: ENST00000574895
  gene symbol: DNAJA3
  hgvsc: ENST00000574895.1:c.212-2789delT
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000393970
  ensembl transcript: ENST00000431375
  gene symbol: DNAJA3
  hgvsc: ENST00000431375.2:c.101+5503delT
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000460358
  ensembl transcript: ENST00000570857
  gene symbol: DNAJA3
  hgvsc: ENST00000570857.1:c.211+5503delT
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000458868
  ensembl transcript: ENST00000575106
  gene symbol: DNAJA3
  hgvsc: ENST00000575106.1:c.212-4delT
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000573120
  gene symbol: DNAJA3
  hgvsc: ENST00000573120.1:n.46-2789delT
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572974
  gene symbol: DNAJA3
  hgvsc: ENST00000572974.1:n.226-4delT
  variant of: http://identifiers.org/hgnc/11808
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 2.5e0
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 704
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: CT
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS

16-4481595-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4481595
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4481595
    reference: chr 16
allele count: 0
allele frequency: NaN
allele num: 0
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000347445
  ensembl transcript: ENST00000355296
  gene symbol: DNAJA3
  hgvsc: ENST00000355296.4:c.212-2790T>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000458868
  ensembl transcript: ENST00000575106
  gene symbol: DNAJA3
  hgvsc: ENST00000575106.1:c.212-5T>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459088
  ensembl transcript: ENST00000574895
  gene symbol: DNAJA3
  hgvsc: ENST00000574895.1:c.212-2790T>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459098
  ensembl transcript: ENST00000576911
  gene symbol: DNAJA3
  hgvsc: ENST00000576911.1:c.211+5502T>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000573120
  gene symbol: DNAJA3
  hgvsc: ENST00000573120.1:n.46-2790T>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572974
  gene symbol: DNAJA3
  hgvsc: ENST00000572974.1:n.226-5T>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000460358
  ensembl transcript: ENST00000570857
  gene symbol: DNAJA3
  hgvsc: ENST00000570857.1:c.211+5502T>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000393970
  ensembl transcript: ENST00000431375
  gene symbol: DNAJA3
  hgvsc: ENST00000431375.2:c.101+5502T>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000262375
  ensembl transcript: ENST00000262375
  gene symbol: DNAJA3
  hgvsc: ENST00000262375.6:c.212-2790T>C
  variant of: http://identifiers.org/hgnc/11808
canonical: false
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2395
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2049
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 1
hgvs: c.212-5T>C
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

16-4481723-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4481723
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4481723
    reference: chr 16
allele count: 1
allele frequency: 2.5e-1
allele num: 4
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000347445
  ensembl transcript: ENST00000355296
  gene symbol: DNAJA3
  hgvsc: ENST00000355296.4:c.212-2662C>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000460358
  ensembl transcript: ENST00000570857
  gene symbol: DNAJA3
  hgvsc: ENST00000570857.1:c.211+5630C>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000393970
  ensembl transcript: ENST00000431375
  gene symbol: DNAJA3
  hgvsc: ENST00000431375.2:c.101+5630C>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459098
  ensembl transcript: ENST00000576911
  gene symbol: DNAJA3
  hgvsc: ENST00000576911.1:c.211+5630C>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000458868
  ensembl transcript: ENST00000575106
  gene symbol: DNAJA3
  hgvsc: ENST00000575106.1:c.285+50C>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572974
  gene symbol: DNAJA3
  hgvsc: ENST00000572974.1:n.349C>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000262375
  ensembl transcript: ENST00000262375
  gene symbol: DNAJA3
  hgvsc: ENST00000262375.6:c.212-2662C>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000573120
  gene symbol: DNAJA3
  hgvsc: ENST00000573120.1:n.46-2662C>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459088
  ensembl transcript: ENST00000574895
  gene symbol: DNAJA3
  hgvsc: ENST00000574895.1:c.212-2662C>T
  variant of: http://identifiers.org/hgnc/11808
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3456
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

16-4484334-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4484334
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4484334
    reference: chr 16
allele count: 1
allele frequency: 8.371142995864656e-6
allele num: 119458
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572139
  gene symbol: DNAJA3
  hgvsc: ENST00000572139.1:n.258-51C>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000347445
  ensembl transcript: ENST00000355296
  gene symbol: DNAJA3
  hgvsc: ENST00000355296.4:c.212-51C>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000393970
  ensembl transcript: ENST00000431375
  gene symbol: DNAJA3
  hgvsc: ENST00000431375.2:c.102-7173C>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000262375
  ensembl transcript: ENST00000262375
  gene symbol: DNAJA3
  hgvsc: ENST00000262375.6:c.212-51C>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572009
  gene symbol: DNAJA3
  hgvsc: ENST00000572009.1:n.36C>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000458868
  ensembl transcript: ENST00000575106
  gene symbol: DNAJA3
  hgvsc: ENST00000575106.1:c.286-51C>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459088
  ensembl transcript: ENST00000574895
  gene symbol: DNAJA3
  hgvsc: ENST00000574895.1:c.212-51C>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000573120
  gene symbol: DNAJA3
  hgvsc: ENST00000573120.1:n.46-51C>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459098
  ensembl transcript: ENST00000576911
  gene symbol: DNAJA3
  hgvsc: ENST00000576911.1:c.212-7173C>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000460358
  ensembl transcript: ENST00000570857
  gene symbol: DNAJA3
  hgvsc: ENST00000570857.1:c.212-3069C>T
  variant of: http://identifiers.org/hgnc/11808
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 3874
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4819
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5459
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2558
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7487
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6892
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2622
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3573
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: DP

16-4484336-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4484336
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4484336
    reference: chr 16
allele count: 19
allele frequency: 1.589984769619575e-4
allele num: 119498
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572009
  gene symbol: DNAJA3
  hgvsc: ENST00000572009.1:n.38T>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000262375
  ensembl transcript: ENST00000262375
  gene symbol: DNAJA3
  hgvsc: ENST00000262375.6:c.212-49T>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000347445
  ensembl transcript: ENST00000355296
  gene symbol: DNAJA3
  hgvsc: ENST00000355296.4:c.212-49T>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000573120
  gene symbol: DNAJA3
  hgvsc: ENST00000573120.1:n.46-49T>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000393970
  ensembl transcript: ENST00000431375
  gene symbol: DNAJA3
  hgvsc: ENST00000431375.2:c.102-7171T>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459098
  ensembl transcript: ENST00000576911
  gene symbol: DNAJA3
  hgvsc: ENST00000576911.1:c.212-7171T>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000460358
  ensembl transcript: ENST00000570857
  gene symbol: DNAJA3
  hgvsc: ENST00000570857.1:c.212-3067T>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459088
  ensembl transcript: ENST00000574895
  gene symbol: DNAJA3
  hgvsc: ENST00000574895.1:c.212-49T>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000458868
  ensembl transcript: ENST00000575106
  gene symbol: DNAJA3
  hgvsc: ENST00000575106.1:c.286-49T>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572139
  gene symbol: DNAJA3
  hgvsc: ENST00000572139.1:n.258-49T>G
  variant of: http://identifiers.org/hgnc/11808
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2558
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7489
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2064
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7225
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4820
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6898
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3875
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3572
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5463
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6166
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

16-4484340-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4484340
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4484340
    reference: chr 16
allele count: 2
allele frequency: 1.67372420372571e-5
allele num: 119494
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000573120
  gene symbol: DNAJA3
  hgvsc: ENST00000573120.1:n.46-45T>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459098
  ensembl transcript: ENST00000576911
  gene symbol: DNAJA3
  hgvsc: ENST00000576911.1:c.212-7167T>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000262375
  ensembl transcript: ENST00000262375
  gene symbol: DNAJA3
  hgvsc: ENST00000262375.6:c.212-45T>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572009
  gene symbol: DNAJA3
  hgvsc: ENST00000572009.1:n.42T>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000460358
  ensembl transcript: ENST00000570857
  gene symbol: DNAJA3
  hgvsc: ENST00000570857.1:c.212-3063T>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459088
  ensembl transcript: ENST00000574895
  gene symbol: DNAJA3
  hgvsc: ENST00000574895.1:c.212-45T>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000393970
  ensembl transcript: ENST00000431375
  gene symbol: DNAJA3
  hgvsc: ENST00000431375.2:c.102-7167T>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000347445
  ensembl transcript: ENST00000355296
  gene symbol: DNAJA3
  hgvsc: ENST00000355296.4:c.212-45T>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572139
  gene symbol: DNAJA3
  hgvsc: ENST00000572139.1:n.258-45T>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000458868
  ensembl transcript: ENST00000575106
  gene symbol: DNAJA3
  hgvsc: ENST00000575106.1:c.286-45T>C
  variant of: http://identifiers.org/hgnc/11808
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2558
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2625
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4821
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3570
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6165
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6906
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3880
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7493
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5501
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2388
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

19-40542467-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40542467
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40542467
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 63820
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000128000
  ensembl protein: ENSP00000471669
  ensembl transcript: ENST00000598845
  gene symbol: ZNF780B
  hgvsc: ENST00000598845.1:c.*7C>T
  variant of: http://identifiers.org/hgnc/33109
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128000
  ensembl protein: ENSP00000221355
  ensembl transcript: ENST00000221355
  gene symbol: ZNF780B
  hgvsc: ENST00000221355.6:c.-146C>T
  variant of: http://identifiers.org/hgnc/33109
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128000
  ensembl protein: ENSP00000391641
  ensembl transcript: ENST00000434248
  gene symbol: ZNF780B
  hgvsc: ENST00000434248.1:c.299C>T
  hgvsp: ENSP00000391641.1:p.Pro100Leu
  variant of: http://identifiers.org/hgnc/33109
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128000
  ensembl protein: ENSP00000471726
  ensembl transcript: ENST00000595995
  gene symbol: ZNF780B
  hgvsc: ENST00000595995.1:c.299C>T
  hgvsp: ENSP00000471726.1:p.Pro100Leu
  variant of: http://identifiers.org/hgnc/33109
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7565
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5221
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3371
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24634
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2785
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13396
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1025
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2105
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3513
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2264
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31151
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11109
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1758
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1089
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1171
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1734
  bin: 9.75e1
  variant carriers: 0
hgvs: p.Pro100Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

16-4484347-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4484347
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4484347
    reference: chr 16
allele count: 2
allele frequency: 1.672968180145214e-5
allele num: 119548
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572009
  gene symbol: DNAJA3
  hgvsc: ENST00000572009.1:n.49C>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000460358
  ensembl transcript: ENST00000570857
  gene symbol: DNAJA3
  hgvsc: ENST00000570857.1:c.212-3056C>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459088
  ensembl transcript: ENST00000574895
  gene symbol: DNAJA3
  hgvsc: ENST00000574895.1:c.212-38C>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000393970
  ensembl transcript: ENST00000431375
  gene symbol: DNAJA3
  hgvsc: ENST00000431375.2:c.102-7160C>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572139
  gene symbol: DNAJA3
  hgvsc: ENST00000572139.1:n.258-38C>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000262375
  ensembl transcript: ENST00000262375
  gene symbol: DNAJA3
  hgvsc: ENST00000262375.6:c.212-38C>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459098
  ensembl transcript: ENST00000576911
  gene symbol: DNAJA3
  hgvsc: ENST00000576911.1:c.212-7160C>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000347445
  ensembl transcript: ENST00000355296
  gene symbol: DNAJA3
  hgvsc: ENST00000355296.4:c.212-38C>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000573120
  gene symbol: DNAJA3
  hgvsc: ENST00000573120.1:n.46-38C>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000458868
  ensembl transcript: ENST00000575106
  gene symbol: DNAJA3
  hgvsc: ENST00000575106.1:c.286-38C>G
  variant of: http://identifiers.org/hgnc/11808
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7498
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3941
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2520
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6165
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7233
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2625
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2558
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6924
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4820
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3572
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5587
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2793
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2452
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

16-4484348-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4484348
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4484348
    reference: chr 16
allele count: 5
allele frequency: 4.180951584580651e-5
allele num: 119590
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000393970
  ensembl transcript: ENST00000431375
  gene symbol: DNAJA3
  hgvsc: ENST00000431375.2:c.102-7159A>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000262375
  ensembl transcript: ENST00000262375
  gene symbol: DNAJA3
  hgvsc: ENST00000262375.6:c.212-37A>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459098
  ensembl transcript: ENST00000576911
  gene symbol: DNAJA3
  hgvsc: ENST00000576911.1:c.212-7159A>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000458868
  ensembl transcript: ENST00000575106
  gene symbol: DNAJA3
  hgvsc: ENST00000575106.1:c.286-37A>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000460358
  ensembl transcript: ENST00000570857
  gene symbol: DNAJA3
  hgvsc: ENST00000570857.1:c.212-3055A>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000573120
  gene symbol: DNAJA3
  hgvsc: ENST00000573120.1:n.46-37A>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572009
  gene symbol: DNAJA3
  hgvsc: ENST00000572009.1:n.50A>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572139
  gene symbol: DNAJA3
  hgvsc: ENST00000572139.1:n.258-37A>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000347445
  ensembl transcript: ENST00000355296
  gene symbol: DNAJA3
  hgvsc: ENST00000355296.4:c.212-37A>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459088
  ensembl transcript: ENST00000574895
  gene symbol: DNAJA3
  hgvsc: ENST00000574895.1:c.212-37A>G
  variant of: http://identifiers.org/hgnc/11808
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2558
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4821
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5584
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7498
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3960
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2625
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6165
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7235
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6921
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3572
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2914
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP

16-4484351-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4484351
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4484351
    reference: chr 16
allele count: 1
allele frequency: 8.361064196250898e-6
allele num: 119602
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000393970
  ensembl transcript: ENST00000431375
  gene symbol: DNAJA3
  hgvsc: ENST00000431375.2:c.102-7156C>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459088
  ensembl transcript: ENST00000574895
  gene symbol: DNAJA3
  hgvsc: ENST00000574895.1:c.212-34C>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572009
  gene symbol: DNAJA3
  hgvsc: ENST00000572009.1:n.53C>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000262375
  ensembl transcript: ENST00000262375
  gene symbol: DNAJA3
  hgvsc: ENST00000262375.6:c.212-34C>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572139
  gene symbol: DNAJA3
  hgvsc: ENST00000572139.1:n.258-34C>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459098
  ensembl transcript: ENST00000576911
  gene symbol: DNAJA3
  hgvsc: ENST00000576911.1:c.212-7156C>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000460358
  ensembl transcript: ENST00000570857
  gene symbol: DNAJA3
  hgvsc: ENST00000570857.1:c.212-3052C>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000458868
  ensembl transcript: ENST00000575106
  gene symbol: DNAJA3
  hgvsc: ENST00000575106.1:c.286-34C>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000347445
  ensembl transcript: ENST00000355296
  gene symbol: DNAJA3
  hgvsc: ENST00000355296.4:c.212-34C>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000573120
  gene symbol: DNAJA3
  hgvsc: ENST00000573120.1:n.46-34C>G
  variant of: http://identifiers.org/hgnc/11808
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2695
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3983
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5607
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2625
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7233
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6928
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2558
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4821
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3572
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7500
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

16-4484355-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4484355
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4484355
    reference: chr 16
allele count: 2
allele frequency: 1.671290570578601e-5
allele num: 119668
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459088
  ensembl transcript: ENST00000574895
  gene symbol: DNAJA3
  hgvsc: ENST00000574895.1:c.212-30G>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000262375
  ensembl transcript: ENST00000262375
  gene symbol: DNAJA3
  hgvsc: ENST00000262375.6:c.212-30G>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000347445
  ensembl transcript: ENST00000355296
  gene symbol: DNAJA3
  hgvsc: ENST00000355296.4:c.212-30G>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000460358
  ensembl transcript: ENST00000570857
  gene symbol: DNAJA3
  hgvsc: ENST00000570857.1:c.212-3048G>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459098
  ensembl transcript: ENST00000576911
  gene symbol: DNAJA3
  hgvsc: ENST00000576911.1:c.212-7152G>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000458868
  ensembl transcript: ENST00000575106
  gene symbol: DNAJA3
  hgvsc: ENST00000575106.1:c.286-30G>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000573120
  gene symbol: DNAJA3
  hgvsc: ENST00000573120.1:n.46-30G>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572009
  gene symbol: DNAJA3
  hgvsc: ENST00000572009.1:n.57G>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000393970
  ensembl transcript: ENST00000431375
  gene symbol: DNAJA3
  hgvsc: ENST00000431375.2:c.102-7152G>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572139
  gene symbol: DNAJA3
  hgvsc: ENST00000572139.1:n.258-30G>C
  variant of: http://identifiers.org/hgnc/11808
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4062
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7236
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7510
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4819
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2559
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5643
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2746
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2625
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3573
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6937
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1106
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45215
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD

16-4484357-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4484357
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4484357
    reference: chr 16
allele count: 1
allele frequency: 8.350312301680083e-6
allele num: 119756
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000347445
  ensembl transcript: ENST00000355296
  gene symbol: DNAJA3
  hgvsc: ENST00000355296.4:c.212-28G>A
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000460358
  ensembl transcript: ENST00000570857
  gene symbol: DNAJA3
  hgvsc: ENST00000570857.1:c.212-3046G>A
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000573120
  gene symbol: DNAJA3
  hgvsc: ENST00000573120.1:n.46-28G>A
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572009
  gene symbol: DNAJA3
  hgvsc: ENST00000572009.1:n.59G>A
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000262375
  ensembl transcript: ENST00000262375
  gene symbol: DNAJA3
  hgvsc: ENST00000262375.6:c.212-28G>A
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459088
  ensembl transcript: ENST00000574895
  gene symbol: DNAJA3
  hgvsc: ENST00000574895.1:c.212-28G>A
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572139
  gene symbol: DNAJA3
  hgvsc: ENST00000572139.1:n.258-28G>A
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000393970
  ensembl transcript: ENST00000431375
  gene symbol: DNAJA3
  hgvsc: ENST00000431375.2:c.102-7150G>A
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459098
  ensembl transcript: ENST00000576911
  gene symbol: DNAJA3
  hgvsc: ENST00000576911.1:c.212-7150G>A
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000458868
  ensembl transcript: ENST00000575106
  gene symbol: DNAJA3
  hgvsc: ENST00000575106.1:c.286-28G>A
  variant of: http://identifiers.org/hgnc/11808
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2838
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7512
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3573
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4819
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6938
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4073
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7236
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2625
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5665
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2559
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff

16-4484358-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4484358
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4484358
    reference: chr 16
allele count: 3
allele frequency: 2.505261048201223e-5
allele num: 119748
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572009
  gene symbol: DNAJA3
  hgvsc: ENST00000572009.1:n.60T>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459088
  ensembl transcript: ENST00000574895
  gene symbol: DNAJA3
  hgvsc: ENST00000574895.1:c.212-27T>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459098
  ensembl transcript: ENST00000576911
  gene symbol: DNAJA3
  hgvsc: ENST00000576911.1:c.212-7149T>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000262375
  ensembl transcript: ENST00000262375
  gene symbol: DNAJA3
  hgvsc: ENST00000262375.6:c.212-27T>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000347445
  ensembl transcript: ENST00000355296
  gene symbol: DNAJA3
  hgvsc: ENST00000355296.4:c.212-27T>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000573120
  gene symbol: DNAJA3
  hgvsc: ENST00000573120.1:n.46-27T>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000393970
  ensembl transcript: ENST00000431375
  gene symbol: DNAJA3
  hgvsc: ENST00000431375.2:c.102-7149T>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000458868
  ensembl transcript: ENST00000575106
  gene symbol: DNAJA3
  hgvsc: ENST00000575106.1:c.286-27T>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572139
  gene symbol: DNAJA3
  hgvsc: ENST00000572139.1:n.258-27T>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000460358
  ensembl transcript: ENST00000570857
  gene symbol: DNAJA3
  hgvsc: ENST00000570857.1:c.212-3045T>G
  variant of: http://identifiers.org/hgnc/11808
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2625
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2559
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2824
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6942
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3574
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4091
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4819
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7512
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5671
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2194
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum

16-4484359-GAT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4484359
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4484357
    reference: chr 16
allele count: 1
allele frequency: 8.346688034188035e-6
allele num: 119808
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000393970
  ensembl transcript: ENST00000431375
  gene symbol: DNAJA3
  hgvsc: ENST00000431375.2:c.102-7147_102-7146delAT
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000458868
  ensembl transcript: ENST00000575106
  gene symbol: DNAJA3
  hgvsc: ENST00000575106.1:c.286-25_286-24delAT
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000347445
  ensembl transcript: ENST00000355296
  gene symbol: DNAJA3
  hgvsc: ENST00000355296.4:c.212-25_212-24delAT
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000460358
  ensembl transcript: ENST00000570857
  gene symbol: DNAJA3
  hgvsc: ENST00000570857.1:c.212-3043_212-3042delAT
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000573120
  gene symbol: DNAJA3
  hgvsc: ENST00000573120.1:n.46-25_46-24delAT
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000262375
  ensembl transcript: ENST00000262375
  gene symbol: DNAJA3
  hgvsc: ENST00000262375.6:c.212-25_212-24delAT
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459098
  ensembl transcript: ENST00000576911
  gene symbol: DNAJA3
  hgvsc: ENST00000576911.1:c.212-7147_212-7146delAT
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459088
  ensembl transcript: ENST00000574895
  gene symbol: DNAJA3
  hgvsc: ENST00000574895.1:c.212-25_212-24delAT
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572009
  gene symbol: DNAJA3
  hgvsc: ENST00000572009.1:n.62_63delAT
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572139
  gene symbol: DNAJA3
  hgvsc: ENST00000572139.1:n.258-25_258-24delAT
  variant of: http://identifiers.org/hgnc/11808
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2858
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4819
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4109
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3574
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2626
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6944
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5675
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2559
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7512
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 628
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1121
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
reference allele: GAT
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

16-4484364-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4484364
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4484364
    reference: chr 16
allele count: 1
allele frequency: 8.3380582329987e-6
allele num: 119932
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000460358
  ensembl transcript: ENST00000570857
  gene symbol: DNAJA3
  hgvsc: ENST00000570857.1:c.212-3039T>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000262375
  ensembl transcript: ENST00000262375
  gene symbol: DNAJA3
  hgvsc: ENST00000262375.6:c.212-21T>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000458868
  ensembl transcript: ENST00000575106
  gene symbol: DNAJA3
  hgvsc: ENST00000575106.1:c.286-21T>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572139
  gene symbol: DNAJA3
  hgvsc: ENST00000572139.1:n.258-21T>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000393970
  ensembl transcript: ENST00000431375
  gene symbol: DNAJA3
  hgvsc: ENST00000431375.2:c.102-7143T>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000573120
  gene symbol: DNAJA3
  hgvsc: ENST00000573120.1:n.46-21T>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459098
  ensembl transcript: ENST00000576911
  gene symbol: DNAJA3
  hgvsc: ENST00000576911.1:c.212-7143T>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572009
  gene symbol: DNAJA3
  hgvsc: ENST00000572009.1:n.66T>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459088
  ensembl transcript: ENST00000574895
  gene symbol: DNAJA3
  hgvsc: ENST00000574895.1:c.212-21T>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000347445
  ensembl transcript: ENST00000355296
  gene symbol: DNAJA3
  hgvsc: ENST00000355296.4:c.212-21T>C
  variant of: http://identifiers.org/hgnc/11808
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3575
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4819
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6945
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4126
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2559
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7512
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5691
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2991
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6166
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2488
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

16-4484393-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4484393
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4484393
    reference: chr 16
allele count: 1
allele frequency: 8.275131574592036e-6
allele num: 120844
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459088
  ensembl transcript: ENST00000574895
  gene symbol: DNAJA3
  hgvsc: ENST00000574895.1:c.220C>G
  hgvsp: ENSP00000459088.1:p.His74Asp
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000458868
  ensembl transcript: ENST00000575106
  gene symbol: DNAJA3
  hgvsc: ENST00000575106.1:c.294C>G
  hgvsp: ENSP00000458868.1:p.Asn98Lys
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000393970
  ensembl transcript: ENST00000431375
  gene symbol: DNAJA3
  hgvsc: ENST00000431375.2:c.102-7114C>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572139
  gene symbol: DNAJA3
  hgvsc: ENST00000572139.1:n.266C>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000460358
  ensembl transcript: ENST00000570857
  gene symbol: DNAJA3
  hgvsc: ENST00000570857.1:c.212-3010C>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000262375
  ensembl transcript: ENST00000262375
  gene symbol: DNAJA3
  hgvsc: ENST00000262375.6:c.220C>G
  hgvsp: ENSP00000262375.4:p.His74Asp
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572009
  gene symbol: DNAJA3
  hgvsc: ENST00000572009.1:n.95C>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000347445
  ensembl transcript: ENST00000355296
  gene symbol: DNAJA3
  hgvsc: ENST00000355296.4:c.220C>G
  hgvsp: ENSP00000347445.4:p.His74Asp
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000573120
  gene symbol: DNAJA3
  hgvsc: ENST00000573120.1:n.54C>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459098
  ensembl transcript: ENST00000576911
  gene symbol: DNAJA3
  hgvsc: ENST00000576911.1:c.212-7114C>G
  variant of: http://identifiers.org/hgnc/11808
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4293
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5755
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2634
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7238
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2560
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3462
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3577
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7521
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6967
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4821
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1167
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3785
  bin: 6.25e1
  variant carriers: 0
hgvs: p.His74Asp
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD

16-4484394-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4484394
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4484394
    reference: chr 16
allele count: 3
allele frequency: 2.481759070829404e-5
allele num: 120882
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000393970
  ensembl transcript: ENST00000431375
  gene symbol: DNAJA3
  hgvsc: ENST00000431375.2:c.102-7113A>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000458868
  ensembl transcript: ENST00000575106
  gene symbol: DNAJA3
  hgvsc: ENST00000575106.1:c.295A>G
  hgvsp: ENSP00000458868.1:p.Ile99Val
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572009
  gene symbol: DNAJA3
  hgvsc: ENST00000572009.1:n.96A>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000573120
  gene symbol: DNAJA3
  hgvsc: ENST00000573120.1:n.55A>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459098
  ensembl transcript: ENST00000576911
  gene symbol: DNAJA3
  hgvsc: ENST00000576911.1:c.212-7113A>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000262375
  ensembl transcript: ENST00000262375
  gene symbol: DNAJA3
  hgvsc: ENST00000262375.6:c.221A>G
  hgvsp: ENSP00000262375.4:p.His74Arg
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572139
  gene symbol: DNAJA3
  hgvsc: ENST00000572139.1:n.267A>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459088
  ensembl transcript: ENST00000574895
  gene symbol: DNAJA3
  hgvsc: ENST00000574895.1:c.221A>G
  hgvsp: ENSP00000459088.1:p.His74Arg
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000347445
  ensembl transcript: ENST00000355296
  gene symbol: DNAJA3
  hgvsc: ENST00000355296.4:c.221A>G
  hgvsp: ENSP00000347445.4:p.His74Arg
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000460358
  ensembl transcript: ENST00000570857
  gene symbol: DNAJA3
  hgvsc: ENST00000570857.1:c.212-3009A>G
  variant of: http://identifiers.org/hgnc/11808
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7238
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7521
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3577
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4821
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6967
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4296
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2633
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3472
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5759
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2562
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1168
  bin: 7.25e1
  variant carriers: 0
hgvs: p.His74Arg
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP

16-4484396-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4484396
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4484396
    reference: chr 16
allele count: 82888
allele frequency: 6.833643873563408e-1
allele num: 121294
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459098
  ensembl transcript: ENST00000576911
  gene symbol: DNAJA3
  hgvsc: ENST00000576911.1:c.212-7111A>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000573120
  gene symbol: DNAJA3
  hgvsc: ENST00000573120.1:n.57A>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000458868
  ensembl transcript: ENST00000575106
  gene symbol: DNAJA3
  hgvsc: ENST00000575106.1:c.297A>T
  hgvsp: ENST00000575106.1:c.297A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000347445
  ensembl transcript: ENST00000355296
  gene symbol: DNAJA3
  hgvsc: ENST00000355296.4:c.223A>T
  hgvsp: ENSP00000347445.4:p.Asn75Tyr
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572139
  gene symbol: DNAJA3
  hgvsc: ENST00000572139.1:n.269A>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459088
  ensembl transcript: ENST00000574895
  gene symbol: DNAJA3
  hgvsc: ENST00000574895.1:c.223A>T
  hgvsp: ENSP00000459088.1:p.Asn75Tyr
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000262375
  ensembl transcript: ENST00000262375
  gene symbol: DNAJA3
  hgvsc: ENST00000262375.6:c.223A>T
  hgvsp: ENSP00000262375.4:p.Asn75Tyr
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572009
  gene symbol: DNAJA3
  hgvsc: ENST00000572009.1:n.98A>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000393970
  ensembl transcript: ENST00000431375
  gene symbol: DNAJA3
  hgvsc: ENST00000431375.2:c.102-7111A>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000460358
  ensembl transcript: ENST00000570857
  gene symbol: DNAJA3
  hgvsc: ENST00000570857.1:c.212-3007A>T
  variant of: http://identifiers.org/hgnc/11808
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 4.25e1
  variant carriers: 445
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 3.25e1
  variant carriers: 313
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 5.75e1
  variant carriers: 747
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 6.75e1
  variant carriers: 1345
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 4.75e1
  variant carriers: 482
genotype depth: GenotypeDepth
  all individuals: 36730
  bin: 9.75e1
  variant carriers: 36309
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 2.75e1
  variant carriers: 263
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 97
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 5.25e1
  variant carriers: 632
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 6.25e1
  variant carriers: 1025
genotype depth: GenotypeDepth
  all individuals: 2544
  bin: 8.25e1
  variant carriers: 2346
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 3.75e1
  variant carriers: 420
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 2.25e1
  variant carriers: 210
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 7.25e1
  variant carriers: 1624
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.75e1
  variant carriers: 165
genotype depth: GenotypeDepth
  all individuals: 2918
  bin: 8.75e1
  variant carriers: 2776
genotype depth: GenotypeDepth
  all individuals: 3111
  bin: 9.25e1
  variant carriers: 2998
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 7.75e1
  variant carriers: 2033
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 7.25e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 30
hgvs: p.Asn75Tyr
num of homozygotes: 28673
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP

16-4484398-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4484398
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4484398
    reference: chr 16
allele count: 1
allele frequency: 8.240626287597857e-6
allele num: 121350
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572009
  gene symbol: DNAJA3
  hgvsc: ENST00000572009.1:n.100C>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459098
  ensembl transcript: ENST00000576911
  gene symbol: DNAJA3
  hgvsc: ENST00000576911.1:c.212-7109C>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000393970
  ensembl transcript: ENST00000431375
  gene symbol: DNAJA3
  hgvsc: ENST00000431375.2:c.102-7109C>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572139
  gene symbol: DNAJA3
  hgvsc: ENST00000572139.1:n.271C>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000262375
  ensembl transcript: ENST00000262375
  gene symbol: DNAJA3
  hgvsc: ENST00000262375.6:c.225C>T
  hgvsp: ENST00000262375.6:c.225C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000460358
  ensembl transcript: ENST00000570857
  gene symbol: DNAJA3
  hgvsc: ENST00000570857.1:c.212-3005C>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000458868
  ensembl transcript: ENST00000575106
  gene symbol: DNAJA3
  hgvsc: ENST00000575106.1:c.299C>T
  hgvsp: ENSP00000458868.1:p.Thr100Ile
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000347445
  ensembl transcript: ENST00000355296
  gene symbol: DNAJA3
  hgvsc: ENST00000355296.4:c.225C>T
  hgvsp: ENST00000355296.4:c.225C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000573120
  gene symbol: DNAJA3
  hgvsc: ENST00000573120.1:n.59C>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459088
  ensembl transcript: ENST00000574895
  gene symbol: DNAJA3
  hgvsc: ENST00000574895.1:c.225C>T
  hgvsp: ENST00000574895.1:c.225C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11808
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1788
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2052
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31311
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3784
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2842
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2414
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5079
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr100Ile
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/16-4484405-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4484405
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4484405
    reference: chr 16
allele count: 4
allele frequency: 3.295815961636702e-5
allele num: 121366
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000347445
  ensembl transcript: ENST00000355296
  gene symbol: DNAJA3
  hgvsc: ENST00000355296.4:c.232A>C
  hgvsp: ENSP00000347445.4:p.Ile78Leu
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000262375
  ensembl transcript: ENST00000262375
  gene symbol: DNAJA3
  hgvsc: ENST00000262375.6:c.232A>C
  hgvsp: ENSP00000262375.4:p.Ile78Leu
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000460358
  ensembl transcript: ENST00000570857
  gene symbol: DNAJA3
  hgvsc: ENST00000570857.1:c.212-2998A>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000393970
  ensembl transcript: ENST00000431375
  gene symbol: DNAJA3
  hgvsc: ENST00000431375.2:c.102-7102A>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000573120
  gene symbol: DNAJA3
  hgvsc: ENST00000573120.1:n.66A>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572139
  gene symbol: DNAJA3
  hgvsc: ENST00000572139.1:n.278A>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572009
  gene symbol: DNAJA3
  hgvsc: ENST00000572009.1:n.107A>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459088
  ensembl transcript: ENST00000574895
  gene symbol: DNAJA3
  hgvsc: ENST00000574895.1:c.232A>C
  hgvsp: ENSP00000459088.1:p.Ile78Leu
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000458868
  ensembl transcript: ENST00000575106
  gene symbol: DNAJA3
  hgvsc: ENST00000575106.1:c.306A>C
  hgvsp: ENST00000575106.1:c.306A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459098
  ensembl transcript: ENST00000576911
  gene symbol: DNAJA3
  hgvsc: ENST00000576911.1:c.212-7102A>C
  variant of: http://identifiers.org/hgnc/11808
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3798
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31311
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2413
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2843
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2294
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2052
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ile78Leu
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

16-4484412-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4484412
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4484412
    reference: chr 16
allele count: 3
allele frequency: 2.471658317954126e-5
allele num: 121376
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572009
  gene symbol: DNAJA3
  hgvsc: ENST00000572009.1:n.114C>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000262375
  ensembl transcript: ENST00000262375
  gene symbol: DNAJA3
  hgvsc: ENST00000262375.6:c.239C>G
  hgvsp: ENSP00000262375.4:p.Thr80Ser
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459098
  ensembl transcript: ENST00000576911
  gene symbol: DNAJA3
  hgvsc: ENST00000576911.1:c.212-7095C>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000347445
  ensembl transcript: ENST00000355296
  gene symbol: DNAJA3
  hgvsc: ENST00000355296.4:c.239C>G
  hgvsp: ENSP00000347445.4:p.Thr80Ser
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000393970
  ensembl transcript: ENST00000431375
  gene symbol: DNAJA3
  hgvsc: ENST00000431375.2:c.102-7095C>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572139
  gene symbol: DNAJA3
  hgvsc: ENST00000572139.1:n.285C>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000458868
  ensembl transcript: ENST00000575106
  gene symbol: DNAJA3
  hgvsc: ENST00000575106.1:c.313C>G
  hgvsp: ENSP00000458868.1:p.Leu105Val
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000460358
  ensembl transcript: ENST00000570857
  gene symbol: DNAJA3
  hgvsc: ENST00000570857.1:c.212-2991C>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459088
  ensembl transcript: ENST00000574895
  gene symbol: DNAJA3
  hgvsc: ENST00000574895.1:c.239C>G
  hgvsp: ENSP00000459088.1:p.Thr80Ser
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000573120
  gene symbol: DNAJA3
  hgvsc: ENST00000573120.1:n.73C>G
  variant of: http://identifiers.org/hgnc/11808
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2412
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2293
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2052
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3820
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31312
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2843
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52456
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr80Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff

16-4484412-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4484412
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4484412
    reference: chr 16
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572139
  gene symbol: DNAJA3
  hgvsc: ENST00000572139.1:n.285C>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000573120
  gene symbol: DNAJA3
  hgvsc: ENST00000573120.1:n.73C>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000460358
  ensembl transcript: ENST00000570857
  gene symbol: DNAJA3
  hgvsc: ENST00000570857.1:c.212-2991C>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459098
  ensembl transcript: ENST00000576911
  gene symbol: DNAJA3
  hgvsc: ENST00000576911.1:c.212-7095C>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000393970
  ensembl transcript: ENST00000431375
  gene symbol: DNAJA3
  hgvsc: ENST00000431375.2:c.102-7095C>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000347445
  ensembl transcript: ENST00000355296
  gene symbol: DNAJA3
  hgvsc: ENST00000355296.4:c.239C>T
  hgvsp: ENSP00000347445.4:p.Thr80Ile
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000262375
  ensembl transcript: ENST00000262375
  gene symbol: DNAJA3
  hgvsc: ENST00000262375.6:c.239C>T
  hgvsp: ENSP00000262375.4:p.Thr80Ile
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459088
  ensembl transcript: ENST00000574895
  gene symbol: DNAJA3
  hgvsc: ENST00000574895.1:c.239C>T
  hgvsp: ENSP00000459088.1:p.Thr80Ile
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000458868
  ensembl transcript: ENST00000575106
  gene symbol: DNAJA3
  hgvsc: ENST00000575106.1:c.313C>T
  hgvsp: ENST00000575106.1:c.313C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572009
  gene symbol: DNAJA3
  hgvsc: ENST00000572009.1:n.114C>T
  variant of: http://identifiers.org/hgnc/11808
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2293
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3820
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2412
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2052
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31312
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2843
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr80Ile
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

16-4484413-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4484413
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4484413
    reference: chr 16
allele count: 2
allele frequency: 1.647772211969417e-5
allele num: 121376
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000347445
  ensembl transcript: ENST00000355296
  gene symbol: DNAJA3
  hgvsc: ENST00000355296.4:c.240T>G
  hgvsp: ENST00000355296.4:c.240T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000262375
  ensembl transcript: ENST00000262375
  gene symbol: DNAJA3
  hgvsc: ENST00000262375.6:c.240T>G
  hgvsp: ENST00000262375.6:c.240T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000573120
  gene symbol: DNAJA3
  hgvsc: ENST00000573120.1:n.74T>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000393970
  ensembl transcript: ENST00000431375
  gene symbol: DNAJA3
  hgvsc: ENST00000431375.2:c.102-7094T>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572009
  gene symbol: DNAJA3
  hgvsc: ENST00000572009.1:n.115T>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459098
  ensembl transcript: ENST00000576911
  gene symbol: DNAJA3
  hgvsc: ENST00000576911.1:c.212-7094T>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000458868
  ensembl transcript: ENST00000575106
  gene symbol: DNAJA3
  hgvsc: ENST00000575106.1:c.314T>G
  hgvsp: ENSP00000458868.1:p.Leu105Arg
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572139
  gene symbol: DNAJA3
  hgvsc: ENST00000572139.1:n.286T>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000460358
  ensembl transcript: ENST00000570857
  gene symbol: DNAJA3
  hgvsc: ENST00000570857.1:c.212-2990T>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459088
  ensembl transcript: ENST00000574895
  gene symbol: DNAJA3
  hgvsc: ENST00000574895.1:c.240T>G
  hgvsp: ENST00000574895.1:c.240T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11808
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2412
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2843
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31313
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3823
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu105Arg
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

16-4484414-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4484414
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4484414
    reference: chr 16
allele count: 10
allele frequency: 8.238996819747228e-5
allele num: 121374
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572009
  gene symbol: DNAJA3
  hgvsc: ENST00000572009.1:n.116G>A
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459088
  ensembl transcript: ENST00000574895
  gene symbol: DNAJA3
  hgvsc: ENST00000574895.1:c.241G>A
  hgvsp: ENSP00000459088.1:p.Ala81Thr
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572139
  gene symbol: DNAJA3
  hgvsc: ENST00000572139.1:n.287G>A
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000393970
  ensembl transcript: ENST00000431375
  gene symbol: DNAJA3
  hgvsc: ENST00000431375.2:c.102-7093G>A
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000573120
  gene symbol: DNAJA3
  hgvsc: ENST00000573120.1:n.75G>A
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459098
  ensembl transcript: ENST00000576911
  gene symbol: DNAJA3
  hgvsc: ENST00000576911.1:c.212-7093G>A
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000347445
  ensembl transcript: ENST00000355296
  gene symbol: DNAJA3
  hgvsc: ENST00000355296.4:c.241G>A
  hgvsp: ENSP00000347445.4:p.Ala81Thr
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000458868
  ensembl transcript: ENST00000575106
  gene symbol: DNAJA3
  hgvsc: ENST00000575106.1:c.315G>A
  hgvsp: ENST00000575106.1:c.315G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000460358
  ensembl transcript: ENST00000570857
  gene symbol: DNAJA3
  hgvsc: ENST00000570857.1:c.212-2989G>A
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000262375
  ensembl transcript: ENST00000262375
  gene symbol: DNAJA3
  hgvsc: ENST00000262375.6:c.241G>A
  hgvsp: ENSP00000262375.4:p.Ala81Thr
  variant of: http://identifiers.org/hgnc/11808
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2412
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31320
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2839
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5268
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala81Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

16-4484414-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4484414
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4484414
    reference: chr 16
allele count: 2
allele frequency: 1.647799363949445e-5
allele num: 121374
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000573120
  gene symbol: DNAJA3
  hgvsc: ENST00000573120.1:n.75G>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000347445
  ensembl transcript: ENST00000355296
  gene symbol: DNAJA3
  hgvsc: ENST00000355296.4:c.241G>T
  hgvsp: ENSP00000347445.4:p.Ala81Ser
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000262375
  ensembl transcript: ENST00000262375
  gene symbol: DNAJA3
  hgvsc: ENST00000262375.6:c.241G>T
  hgvsp: ENSP00000262375.4:p.Ala81Ser
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000458868
  ensembl transcript: ENST00000575106
  gene symbol: DNAJA3
  hgvsc: ENST00000575106.1:c.315G>T
  hgvsp: ENST00000575106.1:c.315G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572009
  gene symbol: DNAJA3
  hgvsc: ENST00000572009.1:n.116G>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000460358
  ensembl transcript: ENST00000570857
  gene symbol: DNAJA3
  hgvsc: ENST00000570857.1:c.212-2989G>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000393970
  ensembl transcript: ENST00000431375
  gene symbol: DNAJA3
  hgvsc: ENST00000431375.2:c.102-7093G>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572139
  gene symbol: DNAJA3
  hgvsc: ENST00000572139.1:n.287G>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459088
  ensembl transcript: ENST00000574895
  gene symbol: DNAJA3
  hgvsc: ENST00000574895.1:c.241G>T
  hgvsp: ENSP00000459088.1:p.Ala81Ser
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459098
  ensembl transcript: ENST00000576911
  gene symbol: DNAJA3
  hgvsc: ENST00000576911.1:c.212-7093G>T
  variant of: http://identifiers.org/hgnc/11808
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2412
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2839
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31320
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala81Ser
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

16-4484418-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4484418
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4484418
    reference: chr 16
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000458868
  ensembl transcript: ENST00000575106
  gene symbol: DNAJA3
  hgvsc: ENST00000575106.1:c.319C>T
  hgvsp: ENSP00000458868.1:p.Pro107Ser
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572009
  gene symbol: DNAJA3
  hgvsc: ENST00000572009.1:n.120C>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000460358
  ensembl transcript: ENST00000570857
  gene symbol: DNAJA3
  hgvsc: ENST00000570857.1:c.212-2985C>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000262375
  ensembl transcript: ENST00000262375
  gene symbol: DNAJA3
  hgvsc: ENST00000262375.6:c.245C>T
  hgvsp: ENSP00000262375.4:p.Ser82Phe
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459088
  ensembl transcript: ENST00000574895
  gene symbol: DNAJA3
  hgvsc: ENST00000574895.1:c.245C>T
  hgvsp: ENSP00000459088.1:p.Ser82Phe
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572139
  gene symbol: DNAJA3
  hgvsc: ENST00000572139.1:n.291C>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459098
  ensembl transcript: ENST00000576911
  gene symbol: DNAJA3
  hgvsc: ENST00000576911.1:c.212-7089C>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000347445
  ensembl transcript: ENST00000355296
  gene symbol: DNAJA3
  hgvsc: ENST00000355296.4:c.245C>T
  hgvsp: ENSP00000347445.4:p.Ser82Phe
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000573120
  gene symbol: DNAJA3
  hgvsc: ENST00000573120.1:n.79C>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000393970
  ensembl transcript: ENST00000431375
  gene symbol: DNAJA3
  hgvsc: ENST00000431375.2:c.102-7089C>T
  variant of: http://identifiers.org/hgnc/11808
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31318
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2413
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser82Phe
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

16-4484427-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4484427
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4484427
    reference: chr 16
allele count: 2
allele frequency: 1.647636465490254e-5
allele num: 121386
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000262375
  ensembl transcript: ENST00000262375
  gene symbol: DNAJA3
  hgvsc: ENST00000262375.6:c.254C>T
  hgvsp: ENSP00000262375.4:p.Thr85Met
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572009
  gene symbol: DNAJA3
  hgvsc: ENST00000572009.1:n.129C>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459088
  ensembl transcript: ENST00000574895
  gene symbol: DNAJA3
  hgvsc: ENST00000574895.1:c.254C>T
  hgvsp: ENSP00000459088.1:p.Thr85Met
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000460358
  ensembl transcript: ENST00000570857
  gene symbol: DNAJA3
  hgvsc: ENST00000570857.1:c.212-2976C>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000573120
  gene symbol: DNAJA3
  hgvsc: ENST00000573120.1:n.88C>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000347445
  ensembl transcript: ENST00000355296
  gene symbol: DNAJA3
  hgvsc: ENST00000355296.4:c.254C>T
  hgvsp: ENSP00000347445.4:p.Thr85Met
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000458868
  ensembl transcript: ENST00000575106
  gene symbol: DNAJA3
  hgvsc: ENST00000575106.1:c.328C>T
  hgvsp: ENSP00000458868.1:p.Arg110Ter
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459098
  ensembl transcript: ENST00000576911
  gene symbol: DNAJA3
  hgvsc: ENST00000576911.1:c.212-7080C>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000393970
  ensembl transcript: ENST00000431375
  gene symbol: DNAJA3
  hgvsc: ENST00000431375.2:c.102-7080C>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572139
  gene symbol: DNAJA3
  hgvsc: ENST00000572139.1:n.300C>T
  variant of: http://identifiers.org/hgnc/11808
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31318
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2413
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3842
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg110Ter
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

16-4484435-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4484435
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4484435
    reference: chr 16
allele count: 49
allele frequency: 4.036376816369567e-4
allele num: 121396
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000393970
  ensembl transcript: ENST00000431375
  gene symbol: DNAJA3
  hgvsc: ENST00000431375.2:c.102-7072C>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000458868
  ensembl transcript: ENST00000575106
  gene symbol: DNAJA3
  hgvsc: ENST00000575106.1:c.336C>G
  hgvsp: ENST00000575106.1:c.336C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000347445
  ensembl transcript: ENST00000355296
  gene symbol: DNAJA3
  hgvsc: ENST00000355296.4:c.262C>G
  hgvsp: ENSP00000347445.4:p.Pro88Ala
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459088
  ensembl transcript: ENST00000574895
  gene symbol: DNAJA3
  hgvsc: ENST00000574895.1:c.262C>G
  hgvsp: ENSP00000459088.1:p.Pro88Ala
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572139
  gene symbol: DNAJA3
  hgvsc: ENST00000572139.1:n.308C>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000573120
  gene symbol: DNAJA3
  hgvsc: ENST00000573120.1:n.96C>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000460358
  ensembl transcript: ENST00000570857
  gene symbol: DNAJA3
  hgvsc: ENST00000570857.1:c.212-2968C>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000262375
  ensembl transcript: ENST00000262375
  gene symbol: DNAJA3
  hgvsc: ENST00000262375.6:c.262C>G
  hgvsp: ENSP00000262375.4:p.Pro88Ala
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572009
  gene symbol: DNAJA3
  hgvsc: ENST00000572009.1:n.137C>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459098
  ensembl transcript: ENST00000576911
  gene symbol: DNAJA3
  hgvsc: ENST00000576911.1:c.212-7072C>G
  variant of: http://identifiers.org/hgnc/11808
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2048
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31328
  bin: 9.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3846
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2409
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2291
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52458
  bin: 9.75e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 5297
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro88Ala
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

16-4484442-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4484442
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4484442
    reference: chr 16
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572009
  gene symbol: DNAJA3
  hgvsc: ENST00000572009.1:n.144C>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000393970
  ensembl transcript: ENST00000431375
  gene symbol: DNAJA3
  hgvsc: ENST00000431375.2:c.102-7065C>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000262375
  ensembl transcript: ENST00000262375
  gene symbol: DNAJA3
  hgvsc: ENST00000262375.6:c.269C>T
  hgvsp: ENSP00000262375.4:p.Ala90Val
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459088
  ensembl transcript: ENST00000574895
  gene symbol: DNAJA3
  hgvsc: ENST00000574895.1:c.269C>T
  hgvsp: ENSP00000459088.1:p.Ala90Val
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572139
  gene symbol: DNAJA3
  hgvsc: ENST00000572139.1:n.315C>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000458868
  ensembl transcript: ENST00000575106
  gene symbol: DNAJA3
  hgvsc: ENST00000575106.1:c.343C>T
  hgvsp: ENSP00000458868.1:p.Pro115Ser
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000347445
  ensembl transcript: ENST00000355296
  gene symbol: DNAJA3
  hgvsc: ENST00000355296.4:c.269C>T
  hgvsp: ENSP00000347445.4:p.Ala90Val
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459098
  ensembl transcript: ENST00000576911
  gene symbol: DNAJA3
  hgvsc: ENST00000576911.1:c.212-7065C>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000573120
  gene symbol: DNAJA3
  hgvsc: ENST00000573120.1:n.103C>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000460358
  ensembl transcript: ENST00000570857
  gene symbol: DNAJA3
  hgvsc: ENST00000570857.1:c.212-2961C>T
  variant of: http://identifiers.org/hgnc/11808
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31316
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2842
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1693
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3856
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala90Val
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD

16-4484444-AAAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4484444
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4484441
    reference: chr 16
allele count: 9
allele frequency: 7.413509060955519e-5
allele num: 121400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000573120
  gene symbol: DNAJA3
  hgvsc: ENST00000573120.1:n.110_112delAGA
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000347445
  ensembl transcript: ENST00000355296
  gene symbol: DNAJA3
  hgvsc: ENST00000355296.4:c.276_278delAGA
  hgvsp: ENSP00000347445.4:p.Glu92del
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459098
  ensembl transcript: ENST00000576911
  gene symbol: DNAJA3
  hgvsc: ENST00000576911.1:c.212-7058_212-7056delAGA
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572009
  gene symbol: DNAJA3
  hgvsc: ENST00000572009.1:n.151_153delAGA
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459088
  ensembl transcript: ENST00000574895
  gene symbol: DNAJA3
  hgvsc: ENST00000574895.1:c.276_278delAGA
  hgvsp: ENSP00000459088.1:p.Glu92del
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000458868
  ensembl transcript: ENST00000575106
  gene symbol: DNAJA3
  hgvsc: ENST00000575106.1:c.350_352delAGA
  hgvsp: ENSP00000458868.1:p.Lys117del
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572139
  gene symbol: DNAJA3
  hgvsc: ENST00000572139.1:n.322_324delAGA
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000460358
  ensembl transcript: ENST00000570857
  gene symbol: DNAJA3
  hgvsc: ENST00000570857.1:c.212-2954_212-2952delAGA
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000393970
  ensembl transcript: ENST00000431375
  gene symbol: DNAJA3
  hgvsc: ENST00000431375.2:c.102-7058_102-7056delAGA
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000262375
  ensembl transcript: ENST00000262375
  gene symbol: DNAJA3
  hgvsc: ENST00000262375.6:c.276_278delAGA
  hgvsp: ENSP00000262375.4:p.Glu92del
  variant of: http://identifiers.org/hgnc/11808
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31318
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1804
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1693
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2291
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3855
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2843
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Glu92del
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: AAAG
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP

16-4484458-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4484458
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4484458
    reference: chr 16
allele count: 15
allele frequency: 1.235523779714347e-4
allele num: 121406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000460358
  ensembl transcript: ENST00000570857
  gene symbol: DNAJA3
  hgvsc: ENST00000570857.1:c.212-2945T>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572009
  gene symbol: DNAJA3
  hgvsc: ENST00000572009.1:n.160T>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000262375
  ensembl transcript: ENST00000262375
  gene symbol: DNAJA3
  hgvsc: ENST00000262375.6:c.285T>C
  hgvsp: ENST00000262375.6:c.285T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000573120
  gene symbol: DNAJA3
  hgvsc: ENST00000573120.1:n.119T>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459098
  ensembl transcript: ENST00000576911
  gene symbol: DNAJA3
  hgvsc: ENST00000576911.1:c.212-7049T>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000347445
  ensembl transcript: ENST00000355296
  gene symbol: DNAJA3
  hgvsc: ENST00000355296.4:c.285T>C
  hgvsp: ENST00000355296.4:c.285T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000458868
  ensembl transcript: ENST00000575106
  gene symbol: DNAJA3
  hgvsc: ENST00000575106.1:c.359T>C
  hgvsp: ENSP00000458868.1:p.Ile120Thr
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459088
  ensembl transcript: ENST00000574895
  gene symbol: DNAJA3
  hgvsc: ENST00000574895.1:c.285T>C
  hgvsp: ENST00000574895.1:c.285T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000393970
  ensembl transcript: ENST00000431375
  gene symbol: DNAJA3
  hgvsc: ENST00000431375.2:c.102-7049T>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572139
  gene symbol: DNAJA3
  hgvsc: ENST00000572139.1:n.331T>C
  variant of: http://identifiers.org/hgnc/11808
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3857
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2842
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31319
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1046
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ile120Thr
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

16-4484470-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4484470
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4484470
    reference: chr 16
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000573120
  gene symbol: DNAJA3
  hgvsc: ENST00000573120.1:n.131A>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572009
  gene symbol: DNAJA3
  hgvsc: ENST00000572009.1:n.172A>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459098
  ensembl transcript: ENST00000576911
  gene symbol: DNAJA3
  hgvsc: ENST00000576911.1:c.212-7037A>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000458868
  ensembl transcript: ENST00000575106
  gene symbol: DNAJA3
  hgvsc: ENST00000575106.1:c.*2A>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000460358
  ensembl transcript: ENST00000570857
  gene symbol: DNAJA3
  hgvsc: ENST00000570857.1:c.212-2933A>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000347445
  ensembl transcript: ENST00000355296
  gene symbol: DNAJA3
  hgvsc: ENST00000355296.4:c.297A>G
  hgvsp: ENST00000355296.4:c.297A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572139
  gene symbol: DNAJA3
  hgvsc: ENST00000572139.1:n.343A>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000262375
  ensembl transcript: ENST00000262375
  gene symbol: DNAJA3
  hgvsc: ENST00000262375.6:c.297A>G
  hgvsp: ENST00000262375.6:c.297A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459088
  ensembl transcript: ENST00000574895
  gene symbol: DNAJA3
  hgvsc: ENST00000574895.1:c.297A>G
  hgvsp: ENST00000574895.1:c.297A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000393970
  ensembl transcript: ENST00000431375
  gene symbol: DNAJA3
  hgvsc: ENST00000431375.2:c.102-7037A>G
  variant of: http://identifiers.org/hgnc/11808
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31317
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3861
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2291
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2631
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2842
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5293
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly99Gly
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

16-4484473-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4484473
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4484473
    reference: chr 16
allele count: 29
allele frequency: 2.38883671889158e-4
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459088
  ensembl transcript: ENST00000574895
  gene symbol: DNAJA3
  hgvsc: ENST00000574895.1:c.300G>A
  hgvsp: ENST00000574895.1:c.300G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572139
  gene symbol: DNAJA3
  hgvsc: ENST00000572139.1:n.346G>A
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000573120
  gene symbol: DNAJA3
  hgvsc: ENST00000573120.1:n.134G>A
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000262375
  ensembl transcript: ENST00000262375
  gene symbol: DNAJA3
  hgvsc: ENST00000262375.6:c.300G>A
  hgvsp: ENST00000262375.6:c.300G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000458868
  ensembl transcript: ENST00000575106
  gene symbol: DNAJA3
  hgvsc: ENST00000575106.1:c.*5G>A
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000347445
  ensembl transcript: ENST00000355296
  gene symbol: DNAJA3
  hgvsc: ENST00000355296.4:c.300G>A
  hgvsp: ENST00000355296.4:c.300G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459098
  ensembl transcript: ENST00000576911
  gene symbol: DNAJA3
  hgvsc: ENST00000576911.1:c.212-7034G>A
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572009
  gene symbol: DNAJA3
  hgvsc: ENST00000572009.1:n.175G>A
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000393970
  ensembl transcript: ENST00000431375
  gene symbol: DNAJA3
  hgvsc: ENST00000431375.2:c.102-7034G>A
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000460358
  ensembl transcript: ENST00000570857
  gene symbol: DNAJA3
  hgvsc: ENST00000570857.1:c.212-2930G>A
  variant of: http://identifiers.org/hgnc/11808
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2842
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31322
  bin: 9.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2631
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2291
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5283
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Val100Val
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

16-4484478-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4484478
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4484478
    reference: chr 16
allele count: 4
allele frequency: 3.295001482750667e-5
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000573120
  gene symbol: DNAJA3
  hgvsc: ENST00000573120.1:n.139G>A
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572139
  gene symbol: DNAJA3
  hgvsc: ENST00000572139.1:n.351G>A
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000460358
  ensembl transcript: ENST00000570857
  gene symbol: DNAJA3
  hgvsc: ENST00000570857.1:c.212-2925G>A
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000458868
  ensembl transcript: ENST00000575106
  gene symbol: DNAJA3
  hgvsc: ENST00000575106.1:c.*10G>A
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000393970
  ensembl transcript: ENST00000431375
  gene symbol: DNAJA3
  hgvsc: ENST00000431375.2:c.102-7029G>A
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459098
  ensembl transcript: ENST00000576911
  gene symbol: DNAJA3
  hgvsc: ENST00000576911.1:c.212-7029G>A
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000347445
  ensembl transcript: ENST00000355296
  gene symbol: DNAJA3
  hgvsc: ENST00000355296.4:c.305G>A
  hgvsp: ENSP00000347445.4:p.Arg102Gln
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459088
  ensembl transcript: ENST00000574895
  gene symbol: DNAJA3
  hgvsc: ENST00000574895.1:c.305G>A
  hgvsp: ENSP00000459088.1:p.Arg102Gln
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000262375
  ensembl transcript: ENST00000262375
  gene symbol: DNAJA3
  hgvsc: ENST00000262375.6:c.305G>A
  hgvsp: ENSP00000262375.4:p.Arg102Gln
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572009
  gene symbol: DNAJA3
  hgvsc: ENST00000572009.1:n.180G>A
  variant of: http://identifiers.org/hgnc/11808
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31322
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2409
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2631
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3853
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg102Gln
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS

16-4484478-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4484478
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4484478
    reference: chr 16
allele count: 7
allele frequency: 5.766252594813668e-5
allele num: 121396
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000262375
  ensembl transcript: ENST00000262375
  gene symbol: DNAJA3
  hgvsc: ENST00000262375.6:c.305G>C
  hgvsp: ENSP00000262375.4:p.Arg102Pro
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000458868
  ensembl transcript: ENST00000575106
  gene symbol: DNAJA3
  hgvsc: ENST00000575106.1:c.*10G>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000393970
  ensembl transcript: ENST00000431375
  gene symbol: DNAJA3
  hgvsc: ENST00000431375.2:c.102-7029G>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459088
  ensembl transcript: ENST00000574895
  gene symbol: DNAJA3
  hgvsc: ENST00000574895.1:c.305G>C
  hgvsp: ENSP00000459088.1:p.Arg102Pro
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459098
  ensembl transcript: ENST00000576911
  gene symbol: DNAJA3
  hgvsc: ENST00000576911.1:c.212-7029G>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000573120
  gene symbol: DNAJA3
  hgvsc: ENST00000573120.1:n.139G>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572009
  gene symbol: DNAJA3
  hgvsc: ENST00000572009.1:n.180G>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000347445
  ensembl transcript: ENST00000355296
  gene symbol: DNAJA3
  hgvsc: ENST00000355296.4:c.305G>C
  hgvsp: ENSP00000347445.4:p.Arg102Pro
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572139
  gene symbol: DNAJA3
  hgvsc: ENST00000572139.1:n.351G>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000460358
  ensembl transcript: ENST00000570857
  gene symbol: DNAJA3
  hgvsc: ENST00000570857.1:c.212-2925G>C
  variant of: http://identifiers.org/hgnc/11808
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2631
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3853
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2409
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31322
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg102Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

16-4484489-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4484489
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4484489
    reference: chr 16
allele count: 2
allele frequency: 1.647880825258717e-5
allele num: 121368
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459088
  ensembl transcript: ENST00000574895
  gene symbol: DNAJA3
  hgvsc: ENST00000574895.1:c.316C>G
  hgvsp: ENSP00000459088.1:p.Gln106Glu
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459098
  ensembl transcript: ENST00000576911
  gene symbol: DNAJA3
  hgvsc: ENST00000576911.1:c.212-7018C>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572139
  gene symbol: DNAJA3
  hgvsc: ENST00000572139.1:n.362C>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000458868
  ensembl transcript: ENST00000575106
  gene symbol: DNAJA3
  hgvsc: ENST00000575106.1:c.*21C>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572009
  gene symbol: DNAJA3
  hgvsc: ENST00000572009.1:n.191C>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000460358
  ensembl transcript: ENST00000570857
  gene symbol: DNAJA3
  hgvsc: ENST00000570857.1:c.212-2914C>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000262375
  ensembl transcript: ENST00000262375
  gene symbol: DNAJA3
  hgvsc: ENST00000262375.6:c.316C>G
  hgvsp: ENSP00000262375.4:p.Gln106Glu
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000573120
  gene symbol: DNAJA3
  hgvsc: ENST00000573120.1:n.150C>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000347445
  ensembl transcript: ENST00000355296
  gene symbol: DNAJA3
  hgvsc: ENST00000355296.4:c.316C>G
  hgvsp: ENSP00000347445.4:p.Gln106Glu
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000393970
  ensembl transcript: ENST00000431375
  gene symbol: DNAJA3
  hgvsc: ENST00000431375.2:c.102-7018C>G
  variant of: http://identifiers.org/hgnc/11808
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2632
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31320
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2409
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3850
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gln106Glu
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: ClippingRankSum

16-4484498-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4484498
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4484498
    reference: chr 16
allele count: 1
allele frequency: 8.24334350012365e-6
allele num: 121310
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572139
  gene symbol: DNAJA3
  hgvsc: ENST00000572139.1:n.371A>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000262375
  ensembl transcript: ENST00000262375
  gene symbol: DNAJA3
  hgvsc: ENST00000262375.6:c.325A>G
  hgvsp: ENSP00000262375.4:p.Ile109Val
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459098
  ensembl transcript: ENST00000576911
  gene symbol: DNAJA3
  hgvsc: ENST00000576911.1:c.212-7009A>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000573120
  gene symbol: DNAJA3
  hgvsc: ENST00000573120.1:n.159A>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459088
  ensembl transcript: ENST00000574895
  gene symbol: DNAJA3
  hgvsc: ENST00000574895.1:c.325A>G
  hgvsp: ENSP00000459088.1:p.Ile109Val
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572009
  gene symbol: DNAJA3
  hgvsc: ENST00000572009.1:n.200A>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000393970
  ensembl transcript: ENST00000431375
  gene symbol: DNAJA3
  hgvsc: ENST00000431375.2:c.102-7009A>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000347445
  ensembl transcript: ENST00000355296
  gene symbol: DNAJA3
  hgvsc: ENST00000355296.4:c.325A>G
  hgvsp: ENSP00000347445.4:p.Ile109Val
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000460358
  ensembl transcript: ENST00000570857
  gene symbol: DNAJA3
  hgvsc: ENST00000570857.1:c.212-2905A>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000458868
  ensembl transcript: ENST00000575106
  gene symbol: DNAJA3
  hgvsc: ENST00000575106.1:c.*30A>G
  variant of: http://identifiers.org/hgnc/11808
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31320
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2632
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3817
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2409
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ile109Val
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum

16-4484506-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4484506
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4484506
    reference: chr 16
allele count: 1
allele frequency: 8.250552787036732e-6
allele num: 121204
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572139
  gene symbol: DNAJA3
  hgvsc: ENST00000572139.1:n.379A>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000573120
  gene symbol: DNAJA3
  hgvsc: ENST00000573120.1:n.167A>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000393970
  ensembl transcript: ENST00000431375
  gene symbol: DNAJA3
  hgvsc: ENST00000431375.2:c.102-7001A>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000460358
  ensembl transcript: ENST00000570857
  gene symbol: DNAJA3
  hgvsc: ENST00000570857.1:c.212-2897A>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572009
  gene symbol: DNAJA3
  hgvsc: ENST00000572009.1:n.208A>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459098
  ensembl transcript: ENST00000576911
  gene symbol: DNAJA3
  hgvsc: ENST00000576911.1:c.212-7001A>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000458868
  ensembl transcript: ENST00000575106
  gene symbol: DNAJA3
  hgvsc: ENST00000575106.1:c.*38A>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000347445
  ensembl transcript: ENST00000355296
  gene symbol: DNAJA3
  hgvsc: ENST00000355296.4:c.333A>G
  hgvsp: ENST00000355296.4:c.333A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000262375
  ensembl transcript: ENST00000262375
  gene symbol: DNAJA3
  hgvsc: ENST00000262375.6:c.333A>G
  hgvsp: ENST00000262375.6:c.333A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459088
  ensembl transcript: ENST00000574895
  gene symbol: DNAJA3
  hgvsc: ENST00000574895.1:c.333A>G
  hgvsp: ENST00000574895.1:c.333A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11808
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2409
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1693
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2293
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31319
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2632
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3716
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Lys111Lys
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

16-4484509-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4484509
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4484509
    reference: chr 16
allele count: 15
allele frequency: 1.238645747316267e-4
allele num: 121100
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572139
  gene symbol: DNAJA3
  hgvsc: ENST00000572139.1:n.382C>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000262375
  ensembl transcript: ENST00000262375
  gene symbol: DNAJA3
  hgvsc: ENST00000262375.6:c.336C>T
  hgvsp: ENST00000262375.6:c.336C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572009
  gene symbol: DNAJA3
  hgvsc: ENST00000572009.1:n.211C>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000393970
  ensembl transcript: ENST00000431375
  gene symbol: DNAJA3
  hgvsc: ENST00000431375.2:c.102-6998C>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000573120
  gene symbol: DNAJA3
  hgvsc: ENST00000573120.1:n.170C>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000458868
  ensembl transcript: ENST00000575106
  gene symbol: DNAJA3
  hgvsc: ENST00000575106.1:c.*41C>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000460358
  ensembl transcript: ENST00000570857
  gene symbol: DNAJA3
  hgvsc: ENST00000570857.1:c.212-2894C>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459098
  ensembl transcript: ENST00000576911
  gene symbol: DNAJA3
  hgvsc: ENST00000576911.1:c.212-6998C>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459088
  ensembl transcript: ENST00000574895
  gene symbol: DNAJA3
  hgvsc: ENST00000574895.1:c.336C>T
  hgvsp: ENST00000574895.1:c.336C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000347445
  ensembl transcript: ENST00000355296
  gene symbol: DNAJA3
  hgvsc: ENST00000355296.4:c.336C>T
  hgvsp: ENST00000355296.4:c.336C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11808
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3639
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2409
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2293
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2631
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31321
  bin: 9.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala112Ala
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

16-4484511-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4484511
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4484511
    reference: chr 16
allele count: 3
allele frequency: 2.478519497686715e-5
allele num: 121040
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000347445
  ensembl transcript: ENST00000355296
  gene symbol: DNAJA3
  hgvsc: ENST00000355296.4:c.338A>T
  hgvsp: ENSP00000347445.4:p.Tyr113Phe
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000458868
  ensembl transcript: ENST00000575106
  gene symbol: DNAJA3
  hgvsc: ENST00000575106.1:c.*43A>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572009
  gene symbol: DNAJA3
  hgvsc: ENST00000572009.1:n.213A>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000460358
  ensembl transcript: ENST00000570857
  gene symbol: DNAJA3
  hgvsc: ENST00000570857.1:c.212-2892A>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459098
  ensembl transcript: ENST00000576911
  gene symbol: DNAJA3
  hgvsc: ENST00000576911.1:c.212-6996A>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572139
  gene symbol: DNAJA3
  hgvsc: ENST00000572139.1:n.384A>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000262375
  ensembl transcript: ENST00000262375
  gene symbol: DNAJA3
  hgvsc: ENST00000262375.6:c.338A>T
  hgvsp: ENSP00000262375.4:p.Tyr113Phe
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459088
  ensembl transcript: ENST00000574895
  gene symbol: DNAJA3
  hgvsc: ENST00000574895.1:c.338A>T
  hgvsp: ENSP00000459088.1:p.Tyr113Phe
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000573120
  gene symbol: DNAJA3
  hgvsc: ENST00000573120.1:n.172A>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000393970
  ensembl transcript: ENST00000431375
  gene symbol: DNAJA3
  hgvsc: ENST00000431375.2:c.102-6996A>T
  variant of: http://identifiers.org/hgnc/11808
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3573
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31319
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2410
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2294
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2631
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4904
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Tyr113Phe
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff

16-4484514-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4484514
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4484514
    reference: chr 16
allele count: 2
allele frequency: 1.65338447802652e-5
allele num: 120964
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572139
  gene symbol: DNAJA3
  hgvsc: ENST00000572139.1:n.387A>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459098
  ensembl transcript: ENST00000576911
  gene symbol: DNAJA3
  hgvsc: ENST00000576911.1:c.212-6993A>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459088
  ensembl transcript: ENST00000574895
  gene symbol: DNAJA3
  hgvsc: ENST00000574895.1:c.341A>T
  hgvsp: ENSP00000459088.1:p.Tyr114Phe
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000393970
  ensembl transcript: ENST00000431375
  gene symbol: DNAJA3
  hgvsc: ENST00000431375.2:c.102-6993A>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000262375
  ensembl transcript: ENST00000262375
  gene symbol: DNAJA3
  hgvsc: ENST00000262375.6:c.341A>T
  hgvsp: ENSP00000262375.4:p.Tyr114Phe
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000460358
  ensembl transcript: ENST00000570857
  gene symbol: DNAJA3
  hgvsc: ENST00000570857.1:c.212-2889A>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000458868
  ensembl transcript: ENST00000575106
  gene symbol: DNAJA3
  hgvsc: ENST00000575106.1:c.*46A>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000573120
  gene symbol: DNAJA3
  hgvsc: ENST00000573120.1:n.175A>T
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000347445
  ensembl transcript: ENST00000355296
  gene symbol: DNAJA3
  hgvsc: ENST00000355296.4:c.341A>T
  hgvsp: ENSP00000347445.4:p.Tyr114Phe
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572009
  gene symbol: DNAJA3
  hgvsc: ENST00000572009.1:n.216A>T
  variant of: http://identifiers.org/hgnc/11808
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2631
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2048
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3476
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31320
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2294
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2410
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Tyr114Phe
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

16-4484525-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4484525
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4484525
    reference: chr 16
allele count: 1
allele frequency: 8.2917364554485e-6
allele num: 120602
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572139
  gene symbol: DNAJA3
  hgvsc: ENST00000572139.1:n.391+7A>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000262375
  ensembl transcript: ENST00000262375
  gene symbol: DNAJA3
  hgvsc: ENST00000262375.6:c.345+7A>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000347445
  ensembl transcript: ENST00000355296
  gene symbol: DNAJA3
  hgvsc: ENST00000355296.4:c.345+7A>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000460358
  ensembl transcript: ENST00000570857
  gene symbol: DNAJA3
  hgvsc: ENST00000570857.1:c.212-2878A>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572009
  gene symbol: DNAJA3
  hgvsc: ENST00000572009.1:n.220+7A>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000573120
  gene symbol: DNAJA3
  hgvsc: ENST00000573120.1:n.179+7A>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000458868
  ensembl transcript: ENST00000575106
  gene symbol: DNAJA3
  hgvsc: ENST00000575106.1:c.*50+7A>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459098
  ensembl transcript: ENST00000576911
  gene symbol: DNAJA3
  hgvsc: ENST00000576911.1:c.212-6982A>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000393970
  ensembl transcript: ENST00000431375
  gene symbol: DNAJA3
  hgvsc: ENST00000431375.2:c.102-6982A>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459088
  ensembl transcript: ENST00000574895
  gene symbol: DNAJA3
  hgvsc: ENST00000574895.1:c.345+7A>G
  variant of: http://identifiers.org/hgnc/11808
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2631
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2993
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31318
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2048
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 966
  bin: 2.25e1
  variant carriers: 0
hgvs: c.345+7A>G
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

16-4484540-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4484540
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4484540
    reference: chr 16
allele count: 1
allele frequency: 8.325840077263796e-6
allele num: 120108
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000460358
  ensembl transcript: ENST00000570857
  gene symbol: DNAJA3
  hgvsc: ENST00000570857.1:c.212-2863T>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572139
  gene symbol: DNAJA3
  hgvsc: ENST00000572139.1:n.391+22T>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459088
  ensembl transcript: ENST00000574895
  gene symbol: DNAJA3
  hgvsc: ENST00000574895.1:c.345+22T>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459098
  ensembl transcript: ENST00000576911
  gene symbol: DNAJA3
  hgvsc: ENST00000576911.1:c.212-6967T>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000393970
  ensembl transcript: ENST00000431375
  gene symbol: DNAJA3
  hgvsc: ENST00000431375.2:c.102-6967T>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000262375
  ensembl transcript: ENST00000262375
  gene symbol: DNAJA3
  hgvsc: ENST00000262375.6:c.345+22T>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000573120
  gene symbol: DNAJA3
  hgvsc: ENST00000573120.1:n.179+22T>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572009
  gene symbol: DNAJA3
  hgvsc: ENST00000572009.1:n.220+22T>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000458868
  ensembl transcript: ENST00000575106
  gene symbol: DNAJA3
  hgvsc: ENST00000575106.1:c.*50+22T>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000347445
  ensembl transcript: ENST00000355296
  gene symbol: DNAJA3
  hgvsc: ENST00000355296.4:c.345+22T>C
  variant of: http://identifiers.org/hgnc/11808
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2631
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1861
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31318
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2048
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1922
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

16-4484542-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4484542
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4484542
    reference: chr 16
allele count: 5
allele frequency: 4.164584374479427e-5
allele num: 120060
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000393970
  ensembl transcript: ENST00000431375
  gene symbol: DNAJA3
  hgvsc: ENST00000431375.2:c.102-6965G>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000458868
  ensembl transcript: ENST00000575106
  gene symbol: DNAJA3
  hgvsc: ENST00000575106.1:c.*50+24G>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000347445
  ensembl transcript: ENST00000355296
  gene symbol: DNAJA3
  hgvsc: ENST00000355296.4:c.345+24G>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572009
  gene symbol: DNAJA3
  hgvsc: ENST00000572009.1:n.220+24G>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459088
  ensembl transcript: ENST00000574895
  gene symbol: DNAJA3
  hgvsc: ENST00000574895.1:c.345+24G>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459098
  ensembl transcript: ENST00000576911
  gene symbol: DNAJA3
  hgvsc: ENST00000576911.1:c.212-6965G>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000262375
  ensembl transcript: ENST00000262375
  gene symbol: DNAJA3
  hgvsc: ENST00000262375.6:c.345+24G>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000573120
  gene symbol: DNAJA3
  hgvsc: ENST00000573120.1:n.179+24G>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000460358
  ensembl transcript: ENST00000570857
  gene symbol: DNAJA3
  hgvsc: ENST00000570857.1:c.212-2861G>C
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572139
  gene symbol: DNAJA3
  hgvsc: ENST00000572139.1:n.391+24G>C
  variant of: http://identifiers.org/hgnc/11808
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31319
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2029
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2631
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD

16-4484543-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4484543
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4484543
    reference: chr 16
allele count: 4
allele frequency: 3.332722334238723e-5
allele num: 120022
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000458868
  ensembl transcript: ENST00000575106
  gene symbol: DNAJA3
  hgvsc: ENST00000575106.1:c.*50+25T>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000262375
  ensembl transcript: ENST00000262375
  gene symbol: DNAJA3
  hgvsc: ENST00000262375.6:c.345+25T>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572009
  gene symbol: DNAJA3
  hgvsc: ENST00000572009.1:n.220+25T>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000393970
  ensembl transcript: ENST00000431375
  gene symbol: DNAJA3
  hgvsc: ENST00000431375.2:c.102-6964T>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572139
  gene symbol: DNAJA3
  hgvsc: ENST00000572139.1:n.391+25T>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459088
  ensembl transcript: ENST00000574895
  gene symbol: DNAJA3
  hgvsc: ENST00000574895.1:c.345+25T>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000460358
  ensembl transcript: ENST00000570857
  gene symbol: DNAJA3
  hgvsc: ENST00000570857.1:c.212-2860T>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000347445
  ensembl transcript: ENST00000355296
  gene symbol: DNAJA3
  hgvsc: ENST00000355296.4:c.345+25T>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459098
  ensembl transcript: ENST00000576911
  gene symbol: DNAJA3
  hgvsc: ENST00000576911.1:c.212-6964T>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000573120
  gene symbol: DNAJA3
  hgvsc: ENST00000573120.1:n.179+25T>G
  variant of: http://identifiers.org/hgnc/11808
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31321
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2294
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2048
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1886
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

16-4484547-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4484547
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4484547
    reference: chr 16
allele count: 1
allele frequency: 8.347802858287698e-6
allele num: 119792
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000347445
  ensembl transcript: ENST00000355296
  gene symbol: DNAJA3
  hgvsc: ENST00000355296.4:c.345+29C>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459098
  ensembl transcript: ENST00000576911
  gene symbol: DNAJA3
  hgvsc: ENST00000576911.1:c.212-6960C>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572009
  gene symbol: DNAJA3
  hgvsc: ENST00000572009.1:n.220+29C>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572139
  gene symbol: DNAJA3
  hgvsc: ENST00000572139.1:n.391+29C>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000262375
  ensembl transcript: ENST00000262375
  gene symbol: DNAJA3
  hgvsc: ENST00000262375.6:c.345+29C>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000460358
  ensembl transcript: ENST00000570857
  gene symbol: DNAJA3
  hgvsc: ENST00000570857.1:c.212-2856C>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000458868
  ensembl transcript: ENST00000575106
  gene symbol: DNAJA3
  hgvsc: ENST00000575106.1:c.*50+29C>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000573120
  gene symbol: DNAJA3
  hgvsc: ENST00000573120.1:n.179+29C>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000393970
  ensembl transcript: ENST00000431375
  gene symbol: DNAJA3
  hgvsc: ENST00000431375.2:c.102-6960C>G
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459088
  ensembl transcript: ENST00000574895
  gene symbol: DNAJA3
  hgvsc: ENST00000574895.1:c.345+29C>G
  variant of: http://identifiers.org/hgnc/11808
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2048
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31320
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1946
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

16-4484559-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4484559
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 4484559
    reference: chr 16
allele count: 1
allele frequency: 8.377173876620983e-6
allele num: 119372
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000460358
  ensembl transcript: ENST00000570857
  gene symbol: DNAJA3
  hgvsc: ENST00000570857.1:c.212-2844G>A
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459098
  ensembl transcript: ENST00000576911
  gene symbol: DNAJA3
  hgvsc: ENST00000576911.1:c.212-6948G>A
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000262375
  ensembl transcript: ENST00000262375
  gene symbol: DNAJA3
  hgvsc: ENST00000262375.6:c.345+41G>A
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572139
  gene symbol: DNAJA3
  hgvsc: ENST00000572139.1:n.391+41G>A
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000458868
  ensembl transcript: ENST00000575106
  gene symbol: DNAJA3
  hgvsc: ENST00000575106.1:c.*50+41G>A
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000393970
  ensembl transcript: ENST00000431375
  gene symbol: DNAJA3
  hgvsc: ENST00000431375.2:c.102-6948G>A
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000459088
  ensembl transcript: ENST00000574895
  gene symbol: DNAJA3
  hgvsc: ENST00000574895.1:c.345+41G>A
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000573120
  gene symbol: DNAJA3
  hgvsc: ENST00000573120.1:n.179+41G>A
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl protein: ENSP00000347445
  ensembl transcript: ENST00000355296
  gene symbol: DNAJA3
  hgvsc: ENST00000355296.4:c.345+41G>A
  variant of: http://identifiers.org/hgnc/11808
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103423
  ensembl transcript: ENST00000572009
  gene symbol: DNAJA3
  hgvsc: ENST00000572009.1:n.220+41G>A
  variant of: http://identifiers.org/hgnc/11808
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2281
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2048
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2294
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31321
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1250
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: BaseQRankSum

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15994
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.594082764777147e-5
allele num: 62732
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8090
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10654
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.55e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.259e0

MQRankSum
type: SiteQuality
SIO_000300: 1.78e-1

DP
type: SiteQuality
SIO_000300: 1.43787e6

QD
type: SiteQuality
SIO_000300: 1.402e1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8084
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.595761657038905e-5
allele num: 62666
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16000
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9612
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.852e0

MQRankSum
type: SiteQuality
SIO_000300: -3.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.669999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.22e-1

QD
type: SiteQuality
SIO_000300: 1.395e1

DP
type: SiteQuality
SIO_000300: 1.435609e6

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9560
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62020
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Latino
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
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South Asian
type: Population
allele count: 1
allele frequency: 6.279829188646068e-5
allele num: 15924
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7988
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MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

DP
type: SiteQuality
SIO_000300: 1.419234e6

QD
type: SiteQuality
SIO_000300: 2.39e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.81e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.33e-1

FS
type: SiteQuality
SIO_000300: 5.006e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.041e0

Latino
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allele count: 2
allele frequency: 1.93050193050193e-4
allele num: 10360
num of homozygotes: 0

South Asian
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allele count: 3
allele frequency: 1.884895702437798e-4
allele num: 15916
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East Asian
type: Population
allele count: 1
allele frequency: 1.258811681772407e-4
allele num: 7944
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9538
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6408
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
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QD
type: SiteQuality
SIO_000300: 1.131e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.53e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-2

DP
type: SiteQuality
SIO_000300: 1.414551e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.473e0

FS
type: SiteQuality
SIO_000300: 5.44e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.72e-1

MQ
type: SiteQuality
SIO_000300: 5.947e1

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15732
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7750
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6352
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African
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allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
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InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.88e-1

DP
type: SiteQuality
SIO_000300: 1.375655e6

QD
type: SiteQuality
SIO_000300: 1.323e1

FS
type: SiteQuality
SIO_000300: 1.552e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

MQRankSum
type: SiteQuality
SIO_000300: 7.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.4e0

VQSLOD
type: SiteQuality
SIO_000300: 8.120000000000001e-1

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.054759898904802e-5
allele num: 59350
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7614
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6286
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.067463706233988e-4
allele num: 9368
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ReadPosRankSum
type: SiteQuality
SIO_000300: 5.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.8e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.06e-1

FS
type: SiteQuality
SIO_000300: 4.233e0

MQ
type: SiteQuality
SIO_000300: 5.943e1

DP
type: SiteQuality
SIO_000300: 1.351613e6

VQSLOD
type: SiteQuality
SIO_000300: 1.25e0

QD
type: SiteQuality
SIO_000300: 1.456e1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57534
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9212
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
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South Asian
type: Population
allele count: 2
allele frequency: 1.298195508243542e-4
allele num: 15406
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6176
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9196
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QD
type: SiteQuality
SIO_000300: 1.361e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e0

VQSLOD
type: SiteQuality
SIO_000300: 1.25e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.33e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.179999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.312243e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.6e0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15132
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9040
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.793464614943147e-5
allele num: 55758
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7166
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6072
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.143641354071363e-4
allele num: 8744
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

DP
type: SiteQuality
SIO_000300: 1.275461e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.53e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.462e0

MQRankSum
type: SiteQuality
SIO_000300: 4.62e-1

MQ
type: SiteQuality
SIO_000300: 5.89e1

QD
type: SiteQuality
SIO_000300: 1.565e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.8e0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7124
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9018
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South Asian
type: Population
allele count: 1
allele frequency: 6.636580833554553e-5
allele num: 15068
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55434
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.7486e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.6e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.07e-1

QD
type: SiteQuality
SIO_000300: 1.363e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.685e0

VQSLOD
type: SiteQuality
SIO_000300: -2.356e0

DP
type: SiteQuality
SIO_000300: 1.267804e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.38e-1

East Asian
type: Population
allele count: 1
allele frequency: 1.530924678505818e-4
allele num: 6532
num of homozygotes: 0

African
type: Population
allele count: 0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14424
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50300
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 7366
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5712
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MQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

QD
type: SiteQuality
SIO_000300: 1.794e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.0472e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.361e0

DP
type: SiteQuality
SIO_000300: 1.163408e6

BaseQRankSum
type: SiteQuality
SIO_000300: 6.94e0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5636
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.025931928687196e-5
allele num: 49360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6422
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Latino
type: Population
allele count: 0
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Other
type: Population
allele count: 0
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allele num: 730
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MQ
type: SiteQuality
SIO_000300: 5.82e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.454e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.76e-1

FS
type: SiteQuality
SIO_000300: 1.813e0

MQRankSum
type: SiteQuality
SIO_000300: -9.2e-2

DP
type: SiteQuality
SIO_000300: 1.151729e6

QD
type: SiteQuality
SIO_000300: 1.09e1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6242
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6846
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.250364689701163e-4
allele num: 47986
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.66e0

VQSLOD
type: SiteQuality
SIO_000300: 5.669999999999999e-1

FS
type: SiteQuality
SIO_000300: 6.06e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.26e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -6.04e-1

DP
type: SiteQuality
SIO_000300: 1.116885e6

QD
type: SiteQuality
SIO_000300: 1.597e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.52e-1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.15081515894524e-5
allele num: 46494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
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South Asian
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allele count: 0
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African
type: Population
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East Asian
type: Population
allele count: 0
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DP
type: SiteQuality
SIO_000300: 1.091903e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.53e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.79e-1

FS
type: SiteQuality
SIO_000300: 2.007e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.23e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.187e0

QD
type: SiteQuality
SIO_000300: 1.39e1

South Asian
type: Population
allele count: 1
allele frequency: 7.314218841427736e-5
allele num: 13672
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.875468867216804e-4
allele num: 5332
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.923976608187134e-3
allele num: 684
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African
type: Population
allele count: 147
allele frequency: 1.847662141779789e-2
allele num: 7956
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5862
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.217589923271389e-5
allele num: 45094
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.67e-1

QD
type: SiteQuality
SIO_000300: 1.427e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

DP
type: SiteQuality
SIO_000300: 1.071452e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.81e0

VQSLOD
type: SiteQuality
SIO_000300: 5.6e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.97e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 676
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.518957024718695e-5
allele num: 44258
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South Asian
type: Population
allele count: 4
allele frequency: 2.945074363127669e-4
allele num: 13582
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7768
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5302
num of homozygotes: 0

East Asian
type: Population
allele count: 0
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allele num: 5768
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DP
type: SiteQuality
SIO_000300: 1.053842e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.242e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.442e0

MQRankSum
type: SiteQuality
SIO_000300: 6.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

QD
type: SiteQuality
SIO_000300: 1.221e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.19e-1

Other
type: Population
allele count: 0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43380
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5912
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5222
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South Asian
type: Population
allele count: 3
allele frequency: 2.232142857142857e-4
allele num: 13440
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VQSLOD
type: SiteQuality
SIO_000300: 5.52e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.15e-1

FS
type: SiteQuality
SIO_000300: 5.429e0

QD
type: SiteQuality
SIO_000300: 1.019e1

DP
type: SiteQuality
SIO_000300: 1.034175e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.606e0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 662
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
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allele num: 7502
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East Asian
type: Population
allele count: 0
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allele num: 5512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.274e-1

QD
type: SiteQuality
SIO_000300: 6.43e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.7e-3

FS
type: SiteQuality
SIO_000300: 3.003e0

MQRankSum
type: SiteQuality
SIO_000300: -6.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.981e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.7e-1

DP
type: SiteQuality
SIO_000300: 1.012622e6

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 3.3373063170441e-4
allele num: 41950
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 654
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5466
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5650
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 5.349023803155924e-4
allele num: 7478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.945525291828794e-4
allele num: 5140
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.26e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.33e-1

QD
type: SiteQuality
SIO_000300: 1.246e1

VQSLOD
type: SiteQuality
SIO_000300: 1.16e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.7e-3

FS
type: SiteQuality
SIO_000300: 5.92e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.03e-1

DP
type: SiteQuality
SIO_000300: 1.006843e6

GenotypeQuality
all individuals: 348
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2258
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6790
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4816
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4682
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36426
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12156
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4694
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.307e0

MQ
type: SiteQuality
SIO_000300: 4.712e1

VQSLOD
type: SiteQuality
SIO_000300: 1.31e0

QD
type: SiteQuality
SIO_000300: 8.85e0

MQRankSum
type: SiteQuality
SIO_000300: -2.219e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.76e-1

DP
type: SiteQuality
SIO_000300: 9.13784e5

FS
type: SiteQuality
SIO_000300: 7.782e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.29e-1

GenotypeQuality
all individuals: 135
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1739
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1215
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4448
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4618
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.528117359413203e-4
allele num: 6544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11678
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.436864187596988e-4
allele num: 34798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4544
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.0e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.374e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.16e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.23e-1

DP
type: SiteQuality
SIO_000300: 8.86514e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.18e-1

GenotypeQuality
all individuals: 182
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30937
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6322
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.947745168217609e-5
allele num: 11176
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33274
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4194
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4418
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.33e-1

FS
type: SiteQuality
SIO_000300: 2.276e0

MQRankSum
type: SiteQuality
SIO_000300: -2.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.12e-1

QD
type: SiteQuality
SIO_000300: 3.44e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.381e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.494e0

DP
type: SiteQuality
SIO_000300: 8.64231e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.999999999999999e-3

GenotypeQuality
all individuals: 136
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1412
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 5784
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19371
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8214
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2616
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 678
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
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variant carriers: 0

GenotypeQuality
all individuals: 4953
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variant carriers: 0

GenotypeQuality
all individuals: 8917
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variant carriers: 0

GenotypeQuality
all individuals: 735
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 914
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variant carriers: 0

GenotypeQuality
all individuals: 81
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variant carriers: 0

GenotypeQuality
all individuals: 5467
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 8.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28718
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 342
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 2.034358047016275e-3
allele num: 4424
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4264
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3278
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2664
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4616
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.19e-1

DP
type: SiteQuality
SIO_000300: 6.18099e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.08e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.67e-1

QD
type: SiteQuality
SIO_000300: 1.327e1

VQSLOD
type: SiteQuality
SIO_000300: 5.49e0

GenotypeQuality
all individuals: 58
bin: 7.25e1
variant carriers: 16

GenotypeQuality
all individuals: 2565
bin: 3.75e1
variant carriers: 6

GenotypeQuality
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variant carriers: 16

GenotypeQuality
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bin: 1.25e1
variant carriers: 13

GenotypeQuality
all individuals: 686
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variant carriers: 12

GenotypeQuality
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GenotypeQuality
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variant carriers: 24

GenotypeQuality
all individuals: 18189
bin: 2.25e1
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GenotypeQuality
all individuals: 8804
bin: 1.75e1
variant carriers: 23

GenotypeQuality
all individuals: 90
bin: 8.75e1
variant carriers: 42

GenotypeQuality
all individuals: 5322
bin: 3.25e1
variant carriers: 7

GenotypeQuality
all individuals: 1927
bin: 9.75e1
variant carriers: 596

GenotypeQuality
all individuals: 107
bin: 8.25e1
variant carriers: 28

GenotypeQuality
all individuals: 474
bin: 6.25e1
variant carriers: 31

GenotypeQuality
all individuals: 103
bin: 9.25e1
variant carriers: 47

Other
type: Population
allele count: 1
allele frequency: 2.923976608187134e-3
allele num: 342
num of homozygotes: 0

African
type: Population
allele count: 539
allele frequency: 1.230593607305936e-1
allele num: 4380
num of homozygotes: 29

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4172
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3208
num of homozygotes: 0

Latino
type: Population
allele count: 29
allele frequency: 6.384852487890797e-3
allele num: 4542
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 1.415027593038064e-4
allele num: 28268
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.71e-1

FS
type: SiteQuality
SIO_000300: 1.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.41e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.48e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

QD
type: SiteQuality
SIO_000300: 1.459e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.537e0

DP
type: SiteQuality
SIO_000300: 6.18006e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1230
bin: 7.5e0
variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.966e3

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.06e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.16e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.646e-1

QD
type: SiteQuality
SIO_000300: 1.162e1

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 18

GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.646e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.16e0

DP
type: SiteQuality
SIO_000300: 5.966e3

QD
type: SiteQuality
SIO_000300: 1.162e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.866e1

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.011e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.716e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 5.0e-1
allele num: 2
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.88e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 1.145e1

MQ
type: SiteQuality
SIO_000300: 5.442e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.202e-1

DP
type: SiteQuality
SIO_000300: 7.875e3

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

GenotypeQuality
all individuals: 1529
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45149
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2084
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51828009231143e-5
allele num: 65864
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9676
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.53e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.156e0

VQSLOD
type: SiteQuality
SIO_000300: -8.069000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: -1.179e0

QD
type: SiteQuality
SIO_000300: 2.95e0

MQ
type: SiteQuality
SIO_000300: 5.434e1

FS
type: SiteQuality
SIO_000300: 2.6971e1

DP
type: SiteQuality
SIO_000300: 2.987599e6

GenotypeQuality
all individuals: 413
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 19

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 137
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 18
allele frequency: 1.859888406695598e-3
allele num: 9678
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65890
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.69414014953921e-5
allele num: 11502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.28e0

MQ
type: SiteQuality
SIO_000300: 5.942e1

MQRankSum
type: SiteQuality
SIO_000300: 1.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.91e-1

QD
type: SiteQuality
SIO_000300: 1.598e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e-1

DP
type: SiteQuality
SIO_000300: 2.98811e6

GenotypeQuality
all individuals: 229
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2431
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65884
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.065262288310616e-4
allele num: 9684
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.67e0

QD
type: SiteQuality
SIO_000300: 1.613e1

FS
type: SiteQuality
SIO_000300: 3.593e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.02e0

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.77e-1

DP
type: SiteQuality
SIO_000300: 2.990016e6

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

GenotypeQuality
all individuals: 276
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4376
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6266
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33036
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4366
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4162
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11070
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 544
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 5.899e1

QD
type: SiteQuality
SIO_000300: 9.42e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.93e-1

DP
type: SiteQuality
SIO_000300: 8.59803e5

VQSLOD
type: SiteQuality
SIO_000300: -5.112e-1

GenotypeQuality
all individuals: 193
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
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GenotypeQuality
all individuals: 222
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GenotypeQuality
all individuals: 77
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GenotypeQuality
all individuals: 72
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GenotypeQuality
all individuals: 553
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 45188
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9690
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8482
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.214771622934888e-4
allele num: 16464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65926
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.67e0

FS
type: SiteQuality
SIO_000300: 8.397e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.35e-1

DP
type: SiteQuality
SIO_000300: 2.994517e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.54e-1

QD
type: SiteQuality
SIO_000300: 1.157e1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9692
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.580811450057614e-5
allele num: 65956
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.3e-2

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 6.909999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

QD
type: SiteQuality
SIO_000300: 1.153e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 4.028e0

DP
type: SiteQuality
SIO_000300: 2.995571e6

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1880
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9698
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65960
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.072382803011902e-5
allele num: 16468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.125999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.400000000000001e-2

DP
type: SiteQuality
SIO_000300: 2.997055e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.231e0

QD
type: SiteQuality
SIO_000300: 1.422e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.19e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.691e-1

GenotypeQuality
all individuals: 42
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 12
bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.25e1
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GenotypeQuality
all individuals: 46
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1633
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65990
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9726
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.214329083181542e-4
allele num: 16470
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.913e0

MQ
type: SiteQuality
SIO_000300: 5.857e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.24e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.75e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.71e-1

DP
type: SiteQuality
SIO_000300: 3.000132e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.52e0

FS
type: SiteQuality
SIO_000300: 9.441000000000001e0

QD
type: SiteQuality
SIO_000300: 1.781e1

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1662
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2192
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9754
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514142087093453e-5
allele num: 66044
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.356e0

MQRankSum
type: SiteQuality
SIO_000300: 1.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.407e0

VQSLOD
type: SiteQuality
SIO_000300: 1.19e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

FS
type: SiteQuality
SIO_000300: 1.278e0

DP
type: SiteQuality
SIO_000300: 3.001844e6

QD
type: SiteQuality
SIO_000300: 1.262e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 44
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.542838971501257e-5
allele num: 66038
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9754
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.82e-1

FS
type: SiteQuality
SIO_000300: 2.409e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.32e0

MQRankSum
type: SiteQuality
SIO_000300: -4.24e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 3.002511e6

QD
type: SiteQuality
SIO_000300: 1.422e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.9e-2

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 45230
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51336299524804e-5
allele num: 66078
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9762
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.418e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.95e-1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.534e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.3e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.548e0

DP
type: SiteQuality
SIO_000300: 3.003318e6

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2207
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GenotypeQuality
all individuals: 45233
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66142
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.070908207867897e-5
allele num: 16472
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.005623e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.55e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 7.47e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.06e-1

QD
type: SiteQuality
SIO_000300: 1.341e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.16e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

FS
type: SiteQuality
SIO_000300: 3.69e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.1e-1

GenotypeQuality
all individuals: 1535
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
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GenotypeQuality
all individuals: 13
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GenotypeQuality
all individuals: 32
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GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 1
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GenotypeQuality
all individuals: 1997
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GenotypeQuality
all individuals: 11
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GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 26
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 13
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GenotypeQuality
all individuals: 269
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10138
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502358703163967e-5
allele num: 66562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

QD
type: SiteQuality
SIO_000300: 1.63e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.139999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.54e-1

DP
type: SiteQuality
SIO_000300: 3.018114e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

FS
type: SiteQuality
SIO_000300: 3.428e0

VQSLOD
type: SiteQuality
SIO_000300: 4.04e-1

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 10
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 1537
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GenotypeQuality
all individuals: 27
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.506399086703119e-5
allele num: 66572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10156
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.070000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.018e0

VQSLOD
type: SiteQuality
SIO_000300: 9.429999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.642e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 3.621e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.68e0

DP
type: SiteQuality
SIO_000300: 3.018604e6

GenotypeQuality
all individuals: 150
bin: 8.25e1
variant carriers: 55

GenotypeQuality
all individuals: 1
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GenotypeQuality
all individuals: 21
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variant carriers: 18

GenotypeQuality
all individuals: 29
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GenotypeQuality
all individuals: 41
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 10

GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 18
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variant carriers: 15

GenotypeQuality
all individuals: 14
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GenotypeQuality
all individuals: 230
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variant carriers: 45

GenotypeQuality
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GenotypeQuality
all individuals: 182
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variant carriers: 72

GenotypeQuality
all individuals: 58675
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variant carriers: 53712

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 27

GenotypeQuality
all individuals: 87
bin: 8.75e1
variant carriers: 34

Latino
type: Population
allele count: 7191
allele frequency: 6.215211754537597e-1
allele num: 11570
num of homozygotes: 2235

African
type: Population
allele count: 6888
allele frequency: 6.646082593593208e-1
allele num: 10364
num of homozygotes: 2301

European (Finnish)
type: Population
allele count: 4551
allele frequency: 6.880858784396734e-1
allele num: 6614
num of homozygotes: 1589

Other
type: Population
allele count: 665
allele frequency: 7.323788546255506e-1
allele num: 908
num of homozygotes: 250

East Asian
type: Population
allele count: 5956
allele frequency: 6.890328551596483e-1
allele num: 8644
num of homozygotes: 2045

European (Non-Finnish)
type: Population
allele count: 48565
allele frequency: 7.28220122956965e-1
allele num: 66690
num of homozygotes: 17691

South Asian
type: Population
allele count: 9072
allele frequency: 5.49684924866699e-1
allele num: 16504
num of homozygotes: 2562

VQSLOD
type: SiteQuality
SIO_000300: 1.32e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.54e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.13e-1

FS
type: SiteQuality
SIO_000300: 3.569e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.6e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.06e0

QD
type: SiteQuality
SIO_000300: 2.283e1

DP
type: SiteQuality
SIO_000300: 6.53969e6

GenotypeQuality
all individuals: 39
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variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 26
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GenotypeQuality
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GenotypeQuality
all individuals: 53
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GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 385
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GenotypeQuality
all individuals: 64
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498980693128672e-5
allele num: 66712
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.34e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.66e0

DP
type: SiteQuality
SIO_000300: 5.852852e6

BaseQRankSum
type: SiteQuality
SIO_000300: -6.77e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.63e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.77e-1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.422774076317383e-4
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.853476e6

MQRankSum
type: SiteQuality
SIO_000300: 3.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.248e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.17e-1

FS
type: SiteQuality
SIO_000300: 4.642e0

MQ
type: SiteQuality
SIO_000300: 5.937e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.25e-1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1026
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.496268097479092e-5
allele num: 66722
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.23e1

FS
type: SiteQuality
SIO_000300: 4.543e0

MQ
type: SiteQuality
SIO_000300: 5.908e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.1e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.879999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e0

DP
type: SiteQuality
SIO_000300: 5.85406e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 384
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.908e1

FS
type: SiteQuality
SIO_000300: 4.543e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

DP
type: SiteQuality
SIO_000300: 5.85406e6

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.1e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.879999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.23e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.18e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.1e-2

FS
type: SiteQuality
SIO_000300: 1.127e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.568e0

DP
type: SiteQuality
SIO_000300: 5.854204e6

VQSLOD
type: SiteQuality
SIO_000300: 1.47e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.467e1

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 52458
bin: 9.75e1
variant carriers: 10

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 10
allele frequency: 1.155535012710885e-3
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.38e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.997e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.6e-2

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 2.87e-1

MQ
type: SiteQuality
SIO_000300: 5.982e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997512064986062e-5
allele num: 66722
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 5.854669e6

MQ
type: SiteQuality
SIO_000300: 5.982e1

InbreedingCoeff
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SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.997e0

QD
type: SiteQuality
SIO_000300: 1.37e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.6e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.624639076034648e-5
allele num: 10390
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.324e0

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.35e-1

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.988e1

QD
type: SiteQuality
SIO_000300: 1.224e1

ReadPosRankSum
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SIO_000300: -6.35e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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Other
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997152704930316e-5
allele num: 66730
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.641e0

VQSLOD
type: SiteQuality
SIO_000300: 2.67e-1

FS
type: SiteQuality
SIO_000300: 3.005e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.66e-1

MQ
type: SiteQuality
SIO_000300: 5.931e1

QD
type: SiteQuality
SIO_000300: 9.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.28e-1

DP
type: SiteQuality
SIO_000300: 5.85507e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

GenotypeQuality
all individuals: 239
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1044
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 47
allele frequency: 5.43101455974116e-3
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.674e0

FS
type: SiteQuality
SIO_000300: 1.145e0

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

QD
type: SiteQuality
SIO_000300: 1.296e1

VQSLOD
type: SiteQuality
SIO_000300: 4.31e0

DP
type: SiteQuality
SIO_000300: 5.85703e6

MQ
type: SiteQuality
SIO_000300: 5.975e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.48e-1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 402
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variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.972e1

FS
type: SiteQuality
SIO_000300: 1.0121e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.1e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.814e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.331e0

DP
type: SiteQuality
SIO_000300: 5.85565e6

MQRankSum
type: SiteQuality
SIO_000300: 5.47e-1

QD
type: SiteQuality
SIO_000300: 1.394e1

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 493
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 9

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.348678295270635e-4
allele num: 66732
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.3e0

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.73e-1

FS
type: SiteQuality
SIO_000300: 4.39e0

MQRankSum
type: SiteQuality
SIO_000300: -1.594e0

QD
type: SiteQuality
SIO_000300: 1.708e1

MQ
type: SiteQuality
SIO_000300: 5.723e1

DP
type: SiteQuality
SIO_000300: 5.855996e6

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 52455
bin: 9.75e1
variant carriers: 15

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 490
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variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 15
allele frequency: 1.441476071497213e-3
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.97e1

DP
type: SiteQuality
SIO_000300: 5.856489e6

MQRankSum
type: SiteQuality
SIO_000300: 2.13e-1

QD
type: SiteQuality
SIO_000300: 1.504e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.39e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.16e0

FS
type: SiteQuality
SIO_000300: 1.148e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.79e0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 406
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 52453
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1046
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

DP
type: SiteQuality
SIO_000300: 5.855809e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.41e0

FS
type: SiteQuality
SIO_000300: 4.91e-1

QD
type: SiteQuality
SIO_000300: 1.359e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.85e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.6e-2

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 52461
bin: 9.75e1
variant carriers: 29

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 28
allele frequency: 2.690755333461465e-3
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.348e0

VQSLOD
type: SiteQuality
SIO_000300: 5.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.97e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.54e-1

QD
type: SiteQuality
SIO_000300: 1.259e1

DP
type: SiteQuality
SIO_000300: 5.85771e6

GenotypeQuality
all individuals: 52457
bin: 9.75e1
variant carriers: 4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 237
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.454828122300915e-4
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.7e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

VQSLOD
type: SiteQuality
SIO_000300: 2.37e0

QD
type: SiteQuality
SIO_000300: 1.373e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 5.856755e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.31e0

FS
type: SiteQuality
SIO_000300: 1.114e0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 52457
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 486
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variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.493555542233679e-5
allele num: 66724
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.202643171806168e-3
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.7e-1

DP
type: SiteQuality
SIO_000300: 5.856755e6

VQSLOD
type: SiteQuality
SIO_000300: 2.37e0

MQ
type: SiteQuality
SIO_000300: 5.978e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 1.114e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.36e-1

QD
type: SiteQuality
SIO_000300: 1.373e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.9e-1

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52455
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1041
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998231043684226e-5
allele num: 66706
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.743e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.48e0

MQRankSum
type: SiteQuality
SIO_000300: 4.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.6e-2

QD
type: SiteQuality
SIO_000300: 1.209e1

DP
type: SiteQuality
SIO_000300: 5.855568e6

MQ
type: SiteQuality
SIO_000300: 5.986e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.2e-2

GenotypeQuality
all individuals: 346
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499610101373643e-5
allele num: 66684
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.99e0

MQ
type: SiteQuality
SIO_000300: 5.918e1

DP
type: SiteQuality
SIO_000300: 5.853954e6

QD
type: SiteQuality
SIO_000300: 1.24e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.505e0

FS
type: SiteQuality
SIO_000300: 2.229e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.343e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e0

MQRankSum
type: SiteQuality
SIO_000300: 1.89e0

GenotypeQuality
all individuals: 473
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5079
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52454
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66658
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.989e1

FS
type: SiteQuality
SIO_000300: 5.18e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.12e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.5e-2

QD
type: SiteQuality
SIO_000300: 1.405e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.18e0

DP
type: SiteQuality
SIO_000300: 5.850385e6

GenotypeQuality
all individuals: 953
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
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variant carriers: 0

GenotypeQuality
all individuals: 387
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 63
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52452
bin: 9.75e1
variant carriers: 15

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4959
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.320774282751469e-4
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.350824002641611e-4
allele num: 66626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16332
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.35e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

QD
type: SiteQuality
SIO_000300: 1.279e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.387e0

FS
type: SiteQuality
SIO_000300: 5.2e-1

DP
type: SiteQuality
SIO_000300: 5.849029e6

MQ
type: SiteQuality
SIO_000300: 5.964e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.85e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.84e-1

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 388
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variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 928
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 22
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GenotypeQuality
all individuals: 34
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GenotypeQuality
all individuals: 20
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GenotypeQuality
all individuals: 231
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GenotypeQuality
all individuals: 52451
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 458
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.841620626151013e-4
allele num: 16290
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.322e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.12e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.142e0

DP
type: SiteQuality
SIO_000300: 5.846192e6

VQSLOD
type: SiteQuality
SIO_000300: 7.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

MQRankSum
type: SiteQuality
SIO_000300: -6.95e-1

FS
type: SiteQuality
SIO_000300: 1.103e0

MQ
type: SiteQuality
SIO_000300: 5.953e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

GenotypeQuality
all individuals: 317
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 232
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GenotypeQuality
all individuals: 35
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4753
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.231072263941894e-4
allele num: 16246
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.25e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.72e-1

QD
type: SiteQuality
SIO_000300: 1.622e1

FS
type: SiteQuality
SIO_000300: 3.512e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.96e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.49e-1

DP
type: SiteQuality
SIO_000300: 5.843163e6

GenotypeQuality
all individuals: 283
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 4139
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15992
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504030802550836e-5
allele num: 66488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.981e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e0

MQRankSum
type: SiteQuality
SIO_000300: 3.36e-1

FS
type: SiteQuality
SIO_000300: 1.128e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.3e-1

DP
type: SiteQuality
SIO_000300: 5.828935e6

VQSLOD
type: SiteQuality
SIO_000300: 1.51e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.33e0

QD
type: SiteQuality
SIO_000300: 1.27e1

GenotypeQuality
all individuals: 34
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 7.5e0
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GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2641
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 360
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GenotypeQuality
all individuals: 67
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GenotypeQuality
all individuals: 230
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GenotypeQuality
all individuals: 238
bin: 3.75e1
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GenotypeQuality
all individuals: 595
bin: 6.75e1
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GenotypeQuality
all individuals: 383
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52450
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 247
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.38895987733197e-5
allele num: 15652
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66344
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.881e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.665e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.065e0

VQSLOD
type: SiteQuality
SIO_000300: -3.161e0

QD
type: SiteQuality
SIO_000300: 1.198e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.29e-2

FS
type: SiteQuality
SIO_000300: 5.69e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.509e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.96e0

DP
type: SiteQuality
SIO_000300: 5.80354e6

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 561
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2470
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1810
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 611
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52451
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 383
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66326
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.559508574353724e-4
allele num: 15628
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.590000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.05e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.65e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.72e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

FS
type: SiteQuality
SIO_000300: 2.117e0

MQRankSum
type: SiteQuality
SIO_000300: 4.88e-1

DP
type: SiteQuality
SIO_000300: 5.800677e6

QD
type: SiteQuality
SIO_000300: 1.212e1

GenotypeQuality
all individuals: 39
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 52450
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2146
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 543
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.031363088057901e-5
allele num: 66320
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.985e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.5e-2

FS
type: SiteQuality
SIO_000300: 5.549e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.34e0

QD
type: SiteQuality
SIO_000300: 1.327e1

DP
type: SiteQuality
SIO_000300: 5.797175e6

VQSLOD
type: SiteQuality
SIO_000300: 7.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.13e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.900000000000001e-3

GenotypeQuality
all individuals: 357
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1943
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 775
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 52449
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 360
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15442
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509479531457553e-5
allele num: 66248
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.179999999999999e-1

FS
type: SiteQuality
SIO_000300: 9.215999999999999e0

QD
type: SiteQuality
SIO_000300: 1.38e1

VQSLOD
type: SiteQuality
SIO_000300: -1.264e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.97e0

MQ
type: SiteQuality
SIO_000300: 5.94e1

DP
type: SiteQuality
SIO_000300: 5.793103e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.7e-3

GenotypeQuality
all individuals: 446
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 52448
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 982
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1896
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 709
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15168
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512447442451375e-5
allele num: 66118
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.06e0