19-54969326-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54969326
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54969326
    reference: chr 19
allele count: 1
allele frequency: 8.245246615326264e-6
allele num: 121282
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167615
  ensembl protein: ENSP00000365709
  ensembl transcript: ENST00000376526
  gene symbol: LENG8
  hgvsc: ENST00000376526.4:c.1836G>T
  hgvsp: ENST00000376526.4:c.1836G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15500
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167615
  ensembl protein: ENSP00000365697
  ensembl transcript: ENST00000376514
  gene symbol: LENG8
  hgvsc: ENST00000376514.2:c.114-1993G>T
  variant of: http://identifiers.org/hgnc/15500
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167615
  ensembl protein: ENSP00000388053
  ensembl transcript: ENST00000431846
  gene symbol: LENG8
  hgvsc: ENST00000431846.1:c.1947G>T
  hgvsp: ENST00000431846.1:c.1947G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15500
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167615
  ensembl protein: ENSP00000318374
  ensembl transcript: ENST00000326764
  gene symbol: LENG8
  hgvsc: ENST00000326764.5:c.1947G>T
  hgvsp: ENST00000326764.5:c.1947G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15500
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29503
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17265
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8437
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3854
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2987
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 913
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12103
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser649Ser
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

19-40504213-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40504213
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40504213
    reference: chr 19
allele count: 1
allele frequency: 8.261458643138033e-6
allele num: 121044
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.-31+391C>T
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187187
  ensembl transcript: ENST00000602253
  gene symbol: ZNF546
  hgvsc: ENST00000602253.1:n.152C>T
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.-31+391C>T
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.-21C>T
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.-21C>T
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.-21C>T
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187187
  ensembl transcript: ENST00000593687
  gene symbol: ZNF546
  hgvsc: ENST00000593687.1:n.234C>T
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.-21C>T
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17683
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2546
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9804
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24508
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1699
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7110
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/19-40504225-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40504225
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40504225
    reference: chr 19
allele count: 1
allele frequency: 8.253412786187088e-6
allele num: 121162
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.-9C>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.-31+403C>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.-9C>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187187
  ensembl transcript: ENST00000602253
  gene symbol: ZNF546
  hgvsc: ENST00000602253.1:n.164C>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.-9C>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.-9C>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187187
  ensembl transcript: ENST00000593687
  gene symbol: ZNF546
  hgvsc: ENST00000593687.1:n.246C>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.-31+403C>A
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9841
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24850
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17673
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4684
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1298
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: African
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum

19-54969326-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54969326
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54969326
    reference: chr 19
allele count: 1
allele frequency: 8.245246615326264e-6
allele num: 121282
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167615
  ensembl protein: ENSP00000365709
  ensembl transcript: ENST00000376526
  gene symbol: LENG8
  hgvsc: ENST00000376526.4:c.1836G>A
  hgvsp: ENST00000376526.4:c.1836G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15500
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167615
  ensembl protein: ENSP00000388053
  ensembl transcript: ENST00000431846
  gene symbol: LENG8
  hgvsc: ENST00000431846.1:c.1947G>A
  hgvsp: ENST00000431846.1:c.1947G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15500
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167615
  ensembl protein: ENSP00000318374
  ensembl transcript: ENST00000326764
  gene symbol: LENG8
  hgvsc: ENST00000326764.5:c.1947G>A
  hgvsp: ENST00000326764.5:c.1947G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15500
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167615
  ensembl protein: ENSP00000365697
  ensembl transcript: ENST00000376514
  gene symbol: LENG8
  hgvsc: ENST00000376514.2:c.114-1993G>A
  variant of: http://identifiers.org/hgnc/15500
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3854
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17265
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8437
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29503
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41063
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2496
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2987
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 913
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser649Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

19-54969332-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54969332
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54969332
    reference: chr 19
allele count: 3
allele frequency: 2.473043822336532e-5
allele num: 121308
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167615
  ensembl protein: ENSP00000388053
  ensembl transcript: ENST00000431846
  gene symbol: LENG8
  hgvsc: ENST00000431846.1:c.1953C>T
  hgvsp: ENST00000431846.1:c.1953C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15500
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167615
  ensembl protein: ENSP00000365697
  ensembl transcript: ENST00000376514
  gene symbol: LENG8
  hgvsc: ENST00000376514.2:c.114-1987C>T
  variant of: http://identifiers.org/hgnc/15500
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167615
  ensembl protein: ENSP00000365709
  ensembl transcript: ENST00000376526
  gene symbol: LENG8
  hgvsc: ENST00000376526.4:c.1842C>T
  hgvsp: ENST00000376526.4:c.1842C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15500
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167615
  ensembl protein: ENSP00000318374
  ensembl transcript: ENST00000326764
  gene symbol: LENG8
  hgvsc: ENST00000326764.5:c.1953C>T
  hgvsp: ENST00000326764.5:c.1953C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15500
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8449
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3855
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17261
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29511
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2500
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41084
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Tyr651Tyr
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

19-54969333-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54969333
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54969333
    reference: chr 19
allele count: 3
allele frequency: 2.473084595980413e-5
allele num: 121306
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167615
  ensembl protein: ENSP00000388053
  ensembl transcript: ENST00000431846
  gene symbol: LENG8
  hgvsc: ENST00000431846.1:c.1954G>A
  hgvsp: ENSP00000388053.1:p.Ala652Thr
  variant of: http://identifiers.org/hgnc/15500
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167615
  ensembl protein: ENSP00000365709
  ensembl transcript: ENST00000376526
  gene symbol: LENG8
  hgvsc: ENST00000376526.4:c.1843G>A
  hgvsp: ENSP00000365709.4:p.Ala615Thr
  variant of: http://identifiers.org/hgnc/15500
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167615
  ensembl protein: ENSP00000318374
  ensembl transcript: ENST00000326764
  gene symbol: LENG8
  hgvsc: ENST00000326764.5:c.1954G>A
  hgvsp: ENSP00000318374.5:p.Ala652Thr
  variant of: http://identifiers.org/hgnc/15500
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167615
  ensembl protein: ENSP00000365697
  ensembl transcript: ENST00000376514
  gene symbol: LENG8
  hgvsc: ENST00000376514.2:c.114-1986G>A
  variant of: http://identifiers.org/hgnc/15500
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8447
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29514
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17262
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3855
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 917
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2496
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2980
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala652Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

19-54969335-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54969335
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54969335
    reference: chr 19
allele count: 2
allele frequency: 1.648641519388024e-5
allele num: 121312
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167615
  ensembl protein: ENSP00000318374
  ensembl transcript: ENST00000326764
  gene symbol: LENG8
  hgvsc: ENST00000326764.5:c.1956C>T
  hgvsp: ENST00000326764.5:c.1956C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15500
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167615
  ensembl protein: ENSP00000365709
  ensembl transcript: ENST00000376526
  gene symbol: LENG8
  hgvsc: ENST00000376526.4:c.1845C>T
  hgvsp: ENST00000376526.4:c.1845C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15500
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167615
  ensembl protein: ENSP00000365697
  ensembl transcript: ENST00000376514
  gene symbol: LENG8
  hgvsc: ENST00000376514.2:c.114-1984C>T
  variant of: http://identifiers.org/hgnc/15500
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167615
  ensembl protein: ENSP00000388053
  ensembl transcript: ENST00000431846
  gene symbol: LENG8
  hgvsc: ENST00000431846.1:c.1956C>T
  hgvsp: ENST00000431846.1:c.1956C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15500
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8444
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17261
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3856
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29523
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2981
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41092
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala652Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

19-54969347-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54969347
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54969347
    reference: chr 19
allele count: 1
allele frequency: 8.24334350012365e-6
allele num: 121310
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167615
  ensembl protein: ENSP00000365709
  ensembl transcript: ENST00000376526
  gene symbol: LENG8
  hgvsc: ENST00000376526.4:c.1857T>C
  hgvsp: ENST00000376526.4:c.1857T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15500
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167615
  ensembl protein: ENSP00000365697
  ensembl transcript: ENST00000376514
  gene symbol: LENG8
  hgvsc: ENST00000376514.2:c.114-1972T>C
  variant of: http://identifiers.org/hgnc/15500
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167615
  ensembl protein: ENSP00000318374
  ensembl transcript: ENST00000326764
  gene symbol: LENG8
  hgvsc: ENST00000326764.5:c.1968T>C
  hgvsp: ENST00000326764.5:c.1968T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15500
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167615
  ensembl protein: ENSP00000388053
  ensembl transcript: ENST00000431846
  gene symbol: LENG8
  hgvsc: ENST00000431846.1:c.1968T>C
  hgvsp: ENST00000431846.1:c.1968T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15500
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17261
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29519
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8432
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3854
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2984
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12103
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2494
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41078
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro656Pro
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/19-54969350-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54969350
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54969350
    reference: chr 19
allele count: 5
allele frequency: 4.121603798470061e-5
allele num: 121312
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167615
  ensembl protein: ENSP00000365709
  ensembl transcript: ENST00000376526
  gene symbol: LENG8
  hgvsc: ENST00000376526.4:c.1860C>A
  hgvsp: ENST00000376526.4:c.1860C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15500
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167615
  ensembl protein: ENSP00000318374
  ensembl transcript: ENST00000326764
  gene symbol: LENG8
  hgvsc: ENST00000326764.5:c.1971C>A
  hgvsp: ENST00000326764.5:c.1971C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15500
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167615
  ensembl protein: ENSP00000388053
  ensembl transcript: ENST00000431846
  gene symbol: LENG8
  hgvsc: ENST00000431846.1:c.1971C>A
  hgvsp: ENST00000431846.1:c.1971C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15500
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167615
  ensembl protein: ENSP00000365697
  ensembl transcript: ENST00000376514
  gene symbol: LENG8
  hgvsc: ENST00000376514.2:c.114-1969C>A
  variant of: http://identifiers.org/hgnc/15500
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8429
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3854
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17255
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29519
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 913
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12104
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2492
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41086
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly657Gly
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP

19-54969353-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54969353
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54969353
    reference: chr 19
allele count: 1
allele frequency: 8.24347940778844e-6
allele num: 121308
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167615
  ensembl protein: ENSP00000365697
  ensembl transcript: ENST00000376514
  gene symbol: LENG8
  hgvsc: ENST00000376514.2:c.114-1966T>C
  variant of: http://identifiers.org/hgnc/15500
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167615
  ensembl protein: ENSP00000365709
  ensembl transcript: ENST00000376526
  gene symbol: LENG8
  hgvsc: ENST00000376526.4:c.1863T>C
  hgvsp: ENST00000376526.4:c.1863T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15500
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167615
  ensembl protein: ENSP00000318374
  ensembl transcript: ENST00000326764
  gene symbol: LENG8
  hgvsc: ENST00000326764.5:c.1974T>C
  hgvsp: ENST00000326764.5:c.1974T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15500
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167615
  ensembl protein: ENSP00000388053
  ensembl transcript: ENST00000431846
  gene symbol: LENG8
  hgvsc: ENST00000431846.1:c.1974T>C
  hgvsp: ENST00000431846.1:c.1974T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15500
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17254
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3854
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29522
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8420
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2492
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genotype quality: GenotypeQuality
  all individuals: 12104
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 914
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41071
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asn658Asn
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum

19-54969374-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54969374
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54969374
    reference: chr 19
allele count: 4
allele frequency: 3.297935492381769e-5
allele num: 121288
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167615
  ensembl protein: ENSP00000365697
  ensembl transcript: ENST00000376514
  gene symbol: LENG8
  hgvsc: ENST00000376514.2:c.114-1945C>T
  variant of: http://identifiers.org/hgnc/15500
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167615
  ensembl protein: ENSP00000365709
  ensembl transcript: ENST00000376526
  gene symbol: LENG8
  hgvsc: ENST00000376526.4:c.1884C>T
  hgvsp: ENST00000376526.4:c.1884C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15500
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167615
  ensembl protein: ENSP00000318374
  ensembl transcript: ENST00000326764
  gene symbol: LENG8
  hgvsc: ENST00000326764.5:c.1995C>T
  hgvsp: ENST00000326764.5:c.1995C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15500
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167615
  ensembl protein: ENSP00000388053
  ensembl transcript: ENST00000431846
  gene symbol: LENG8
  hgvsc: ENST00000431846.1:c.1995C>T
  hgvsp: ENST00000431846.1:c.1995C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15500
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17235
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8395
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29506
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3849
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2489
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 910
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41045
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2977
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Tyr665Tyr
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP

19-40504227-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40504227
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40504227
    reference: chr 19
allele count: 1
allele frequency: 8.251778258214646e-6
allele num: 121186
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.-7A>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.-7A>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187187
  ensembl transcript: ENST00000593687
  gene symbol: ZNF546
  hgvsc: ENST00000593687.1:n.248A>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.-7A>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.-7A>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.-31+405A>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187187
  ensembl transcript: ENST00000602253
  gene symbol: ZNF546
  hgvsc: ENST00000602253.1:n.166A>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.-31+405A>G
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24901
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2541
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9845
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17664
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7165
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2026
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1704
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1293
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

19-40504234-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40504234
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40504234
    reference: chr 19
allele count: 10
allele frequency: 8.24905548314718e-5
allele num: 121226
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.1A>G
  hgvsp: ENSP00000472403.1:p.Met1?
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187187
  ensembl transcript: ENST00000602253
  gene symbol: ZNF546
  hgvsc: ENST00000602253.1:n.173A>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: true
  consequence: start_lost
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.1A>G
  hgvsp: ENSP00000339823.3:p.Met1?
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.1A>G
  hgvsp: ENSP00000469540.1:p.Met1?
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.-31+412A>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.1A>G
  hgvsp: ENSP00000470423.1:p.Met1?
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.-31+412A>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187187
  ensembl transcript: ENST00000593687
  gene symbol: ZNF546
  hgvsc: ENST00000593687.1:n.255A>G
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25008
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17683
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2539
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9846
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4689
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1282
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD

19-40504257-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40504257
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40504257
    reference: chr 19
allele count: 3
allele frequency: 2.47320692497939e-5
allele num: 121300
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.6+18C>T
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.6+18C>T
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.-31+435C>T
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.24C>T
  hgvsp: ENST00000595225.1:c.24C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.-31+435C>T
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.24C>T
  hgvsp: ENST00000347077.4:c.24C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187187
  ensembl transcript: ENST00000602253
  gene symbol: ZNF546
  hgvsc: ENST00000602253.1:n.196C>T
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl transcript: ENST00000593687
  gene symbol: ZNF546
  hgvsc: ENST00000593687.1:n.260+18C>T
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25257
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2538
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9880
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17595
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42297
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
hgvs: p.His8His
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

19-40504258-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40504258
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40504258
    reference: chr 19
allele count: 3
allele frequency: 2.47320692497939e-5
allele num: 121300
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187187
  ensembl transcript: ENST00000602253
  gene symbol: ZNF546
  hgvsc: ENST00000602253.1:n.197G>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.-31+436G>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.25G>A
  hgvsp: ENSP00000339823.3:p.Gly9Arg
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.6+19G>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.25G>A
  hgvsp: ENSP00000472403.1:p.Gly9Arg
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.6+19G>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl transcript: ENST00000593687
  gene symbol: ZNF546
  hgvsc: ENST00000593687.1:n.260+19G>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.-31+436G>A
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2541
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9888
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17578
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25267
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42297
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7137
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2017
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly9Arg
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-40504264-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40504264
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40504264
    reference: chr 19
allele count: 3
allele frequency: 2.473043822336532e-5
allele num: 121308
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.31C>G
  hgvsp: ENSP00000472403.1:p.Pro11Ala
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.6+25C>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187187
  ensembl transcript: ENST00000602253
  gene symbol: ZNF546
  hgvsc: ENST00000602253.1:n.203C>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl transcript: ENST00000593687
  gene symbol: ZNF546
  hgvsc: ENST00000593687.1:n.260+25C>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.31C>G
  hgvsp: ENSP00000339823.3:p.Pro11Ala
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.-31+442C>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.6+25C>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.-31+442C>G
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17566
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25333
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9881
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2533
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1686
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro11Ala
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
reference allele: C
site quality: DP
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff

19-40504267-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40504267
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40504267
    reference: chr 19
allele count: 1
allele frequency: 8.243615319934711e-6
allele num: 121306
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.34A>G
  hgvsp: ENSP00000339823.3:p.Asn12Asp
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.6+28A>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.6+28A>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187187
  ensembl transcript: ENST00000602253
  gene symbol: ZNF546
  hgvsc: ENST00000602253.1:n.206A>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.34A>G
  hgvsp: ENSP00000472403.1:p.Asn12Asp
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.-31+445A>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.-31+445A>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl transcript: ENST00000593687
  gene symbol: ZNF546
  hgvsc: ENST00000593687.1:n.260+28A>G
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25346
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2533
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17577
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9873
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asn12Asp
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

19-40504269-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40504269
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40504269
    reference: chr 19
allele count: 1
allele frequency: 8.243615319934711e-6
allele num: 121306
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.6+30T>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.36T>A
  hgvsp: ENSP00000472403.1:p.Asn12Lys
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.-31+447T>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.-31+447T>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187187
  ensembl transcript: ENST00000602253
  gene symbol: ZNF546
  hgvsc: ENST00000602253.1:n.208T>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.6+30T>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl transcript: ENST00000593687
  gene symbol: ZNF546
  hgvsc: ENST00000593687.1:n.260+30T>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.36T>A
  hgvsp: ENSP00000339823.3:p.Asn12Lys
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17580
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25352
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2532
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9873
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asn12Lys
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

19-40504279-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40504279
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40504279
    reference: chr 19
allele count: 2
allele frequency: 1.648750247312537e-5
allele num: 121304
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.46A>G
  hgvsp: ENSP00000339823.3:p.Ile16Val
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.-31+457A>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.-31+457A>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.6+40A>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187187
  ensembl transcript: ENST00000602253
  gene symbol: ZNF546
  hgvsc: ENST00000602253.1:n.218A>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl transcript: ENST00000593687
  gene symbol: ZNF546
  hgvsc: ENST00000593687.1:n.260+40A>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.46A>G
  hgvsp: ENSP00000472403.1:p.Ile16Val
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.6+40A>G
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2533
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17557
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9882
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25371
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42441
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ile16Val
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

19-40504281-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40504281
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40504281
    reference: chr 19
allele count: 7
allele frequency: 5.770530723954297e-5
allele num: 121306
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187187
  ensembl transcript: ENST00000602253
  gene symbol: ZNF546
  hgvsc: ENST00000602253.1:n.220T>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.-31+459T>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.48T>G
  hgvsp: ENSP00000472403.1:p.Ile16Met
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.6+42T>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.-31+459T>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl transcript: ENST00000593687
  gene symbol: ZNF546
  hgvsc: ENST00000593687.1:n.260+42T>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.6+42T>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.48T>G
  hgvsp: ENSP00000339823.3:p.Ile16Met
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2532
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25382
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9880
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17547
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7142
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1280
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ile16Met
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: African
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

http://identifiers.org/exac.variant/19-40504290-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40504290
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40504290
    reference: chr 19
allele count: 1
allele frequency: 8.244702778464837e-6
allele num: 121290
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.57C>A
  hgvsp: ENST00000347077.4:c.57C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl transcript: ENST00000593687
  gene symbol: ZNF546
  hgvsc: ENST00000593687.1:n.260+51C>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.6+51C>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.6+51C>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.57C>A
  hgvsp: ENST00000595225.1:c.57C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.-31+468C>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187187
  ensembl transcript: ENST00000602253
  gene symbol: ZNF546
  hgvsc: ENST00000602253.1:n.229C>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.-31+468C>A
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17514
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25395
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2534
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9874
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2008
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42425
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ile19Ile
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

19-40504292-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40504292
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40504292
    reference: chr 19
allele count: 2
allele frequency: 1.648967746190884e-5
allele num: 121288
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl transcript: ENST00000593687
  gene symbol: ZNF546
  hgvsc: ENST00000593687.1:n.260+53T>C
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187187
  ensembl transcript: ENST00000602253
  gene symbol: ZNF546
  hgvsc: ENST00000602253.1:n.231T>C
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.59T>C
  hgvsp: ENSP00000339823.3:p.Ile20Thr
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.6+53T>C
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.-31+470T>C
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.6+53T>C
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.59T>C
  hgvsp: ENSP00000472403.1:p.Ile20Thr
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.-31+470T>C
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17522
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9874
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25393
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2532
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7135
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile20Thr
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

19-40504295-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40504295
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40504295
    reference: chr 19
allele count: 13
allele frequency: 1.071882059992414e-4
allele num: 121282
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.62C>T
  hgvsp: ENSP00000472403.1:p.Pro21Leu
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.-31+473C>T
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl transcript: ENST00000593687
  gene symbol: ZNF546
  hgvsc: ENST00000593687.1:n.260+56C>T
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.62C>T
  hgvsp: ENSP00000339823.3:p.Pro21Leu
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.6+56C>T
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.6+56C>T
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.-31+473C>T
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187187
  ensembl transcript: ENST00000602253
  gene symbol: ZNF546
  hgvsc: ENST00000602253.1:n.234C>T
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17508
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2531
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25398
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9877
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2002
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1277
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro21Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

19-40504299-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40504299
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40504299
    reference: chr 19
allele count: 1
allele frequency: 8.246198502490351e-6
allele num: 121268
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187187
  ensembl transcript: ENST00000602253
  gene symbol: ZNF546
  hgvsc: ENST00000602253.1:n.238G>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl transcript: ENST00000593687
  gene symbol: ZNF546
  hgvsc: ENST00000593687.1:n.260+60G>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.6+60G>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.66G>A
  hgvsp: ENST00000595225.1:c.66G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.-31+477G>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.66G>A
  hgvsp: ENST00000347077.4:c.66G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.-31+477G>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.6+60G>A
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9882
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25400
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2533
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17471
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7121
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu22Leu
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum

19-40504312-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40504312
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40504312
    reference: chr 19
allele count: 6
allele frequency: 4.953846661932991e-5
allele num: 121118
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.79A>T
  hgvsp: ENSP00000339823.3:p.Ile27Leu
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187187
  ensembl transcript: ENST00000602253
  gene symbol: ZNF546
  hgvsc: ENST00000602253.1:n.251A>T
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.6+73A>T
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.79A>T
  hgvsp: ENSP00000472403.1:p.Ile27Leu
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl transcript: ENST00000593687
  gene symbol: ZNF546
  hgvsc: ENST00000593687.1:n.260+73A>T
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.-31+490A>T
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.-31+490A>T
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.6+73A>T
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9863
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2529
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17217
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25389
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1270
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile27Leu
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

19-40504314-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40504314
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40504314
    reference: chr 19
allele count: 1
allele frequency: 8.259411599517651e-6
allele num: 121074
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl transcript: ENST00000593687
  gene symbol: ZNF546
  hgvsc: ENST00000593687.1:n.260+75A>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187187
  ensembl transcript: ENST00000602253
  gene symbol: ZNF546
  hgvsc: ENST00000602253.1:n.253A>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.81A>G
  hgvsp: ENSP00000472403.1:p.Ile27Met
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.-31+492A>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.81A>G
  hgvsp: ENSP00000339823.3:p.Ile27Met
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.-31+492A>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.6+75A>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.6+75A>G
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25372
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17142
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9859
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2531
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ile27Met
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP

19-40504316-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40504316
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40504316
    reference: chr 19
allele count: 1
allele frequency: 8.259411599517651e-6
allele num: 121074
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.83T>C
  hgvsp: ENSP00000339823.3:p.Met28Thr
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.6+77T>C
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.83T>C
  hgvsp: ENSP00000472403.1:p.Met28Thr
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.-31+494T>C
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.6+77T>C
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187187
  ensembl transcript: ENST00000602253
  gene symbol: ZNF546
  hgvsc: ENST00000602253.1:n.255T>C
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.-31+494T>C
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl transcript: ENST00000593687
  gene symbol: ZNF546
  hgvsc: ENST00000593687.1:n.260+77T>C
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9859
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17135
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2533
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25375
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4672
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 42123
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1989
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Met28Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

19-40504319-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40504319
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40504319
    reference: chr 19
allele count: 1
allele frequency: 8.262141216517673e-6
allele num: 121034
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.84+2T>C
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.84+2T>C
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.6+80T>C
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl transcript: ENST00000593687
  gene symbol: ZNF546
  hgvsc: ENST00000593687.1:n.260+80T>C
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187187
  ensembl transcript: ENST00000602253
  gene symbol: ZNF546
  hgvsc: ENST00000602253.1:n.258T>C
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.6+80T>C
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.-31+497T>C
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.-31+497T>C
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17005
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25368
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9862
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2531
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4671
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42036
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 3.25e1
  variant carriers: 0
hgvs: c.84+2T>C
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

http://identifiers.org/exac.variant/19-40504330-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40504330
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40504330
    reference: chr 19
allele count: 1
allele frequency: 8.301097405076952e-6
allele num: 120466
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.-31+508A>C
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187187
  ensembl transcript: ENST00000602253
  gene symbol: ZNF546
  hgvsc: ENST00000602253.1:n.269A>C
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.-31+508A>C
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl transcript: ENST00000593687
  gene symbol: ZNF546
  hgvsc: ENST00000593687.1:n.260+91A>C
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.84+13A>C
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.6+91A>C
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.6+91A>C
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.84+13A>C
  variant of: http://identifiers.org/hgnc/28671
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2518
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15808
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24983
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9831
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1244
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1412
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum

19-40504330-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40504330
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40504330
    reference: chr 19
allele count: 3
allele frequency: 2.490329221523085e-5
allele num: 120466
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl transcript: ENST00000593687
  gene symbol: ZNF546
  hgvsc: ENST00000593687.1:n.260+91A>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.6+91A>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.-31+508A>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.84+13A>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.6+91A>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.84+13A>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.-31+508A>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187187
  ensembl transcript: ENST00000602253
  gene symbol: ZNF546
  hgvsc: ENST00000602253.1:n.269A>G
  variant of: http://identifiers.org/hgnc/28671
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24983
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15808
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2518
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9831
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4674
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
reference allele: A
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

19-40504338-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40504338
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40504338
    reference: chr 19
allele count: 2
allele frequency: 1.671067143477825e-5
allele num: 119684
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.84+21G>T
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.6+99G>T
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.84+21G>T
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187187
  ensembl transcript: ENST00000602253
  gene symbol: ZNF546
  hgvsc: ENST00000602253.1:n.277G>T
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.-31+516G>T
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl transcript: ENST00000593687
  gene symbol: ZNF546
  hgvsc: ENST00000593687.1:n.260+99G>T
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.6+99G>T
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.-31+516G>T
  variant of: http://identifiers.org/hgnc/28671
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13401
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9561
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2499
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4169
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23767
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36927
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4665
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1283
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1904
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum

19-40504368-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40504368
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40504368
    reference: chr 19
allele count: 2
allele frequency: 1.731811648165145e-5
allele num: 115486
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.-31+546G>C
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.6+129G>C
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl transcript: ENST00000593687
  gene symbol: ZNF546
  hgvsc: ENST00000593687.1:n.260+129G>C
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.6+129G>C
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187187
  ensembl transcript: ENST00000602253
  gene symbol: ZNF546
  hgvsc: ENST00000602253.1:n.307G>C
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.84+51G>C
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.-31+546G>C
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.84+51G>C
  variant of: http://identifiers.org/hgnc/28671
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4304
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15202
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9041
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13804
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8768
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1074
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4753
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6762
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3874
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1166
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1690
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7213
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3236
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ

19-40504368-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40504368
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40504368
    reference: chr 19
allele count: 148
allele frequency: 1.281540619642208e-3
allele num: 115486
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.-31+546G>T
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.-31+546G>T
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.6+129G>T
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.84+51G>T
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187187
  ensembl transcript: ENST00000602253
  gene symbol: ZNF546
  hgvsc: ENST00000602253.1:n.307G>T
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl transcript: ENST00000593687
  gene symbol: ZNF546
  hgvsc: ENST00000593687.1:n.260+129G>T
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.84+51G>T
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.6+129G>T
  variant of: http://identifiers.org/hgnc/28671
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15202
  bin: 1.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 9041
  bin: 1.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8768
  bin: 2.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 3.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4304
  bin: 3.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13804
  bin: 2.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3236
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6762
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3099
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1074
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4753
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7431
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6719
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 4
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff

19-40505487-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40505487
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40505488
    reference: chr 19
allele count: 0
allele frequency: NaN
allele num: 0
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.7-6dupT
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.84+1185dupT
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.6+1263dupT
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.-31+1680dupT
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl transcript: ENST00000593687
  gene symbol: ZNF546
  hgvsc: ENST00000593687.1:n.261-6dupT
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.84+1185dupT
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.-31+1680dupT
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

19-40505487-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40505487
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40505486
    reference: chr 19
allele count: 0
allele frequency: NaN
allele num: 0
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl transcript: ENST00000593687
  gene symbol: ZNF546
  hgvsc: ENST00000593687.1:n.261-6delT
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.-31+1680delT
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.-31+1680delT
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.7-6delT
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.84+1185delT
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.6+1263delT
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.84+1185delT
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 2.5e0
  variant carriers: 11
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 7.5e0
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: AT
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum

19-40505487-ATT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40505487
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40505485
    reference: chr 19
allele count: 0
allele frequency: NaN
allele num: 0
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.-31+1679_-31+1680delTT
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.84+1184_84+1185delTT
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl transcript: ENST00000593687
  gene symbol: ZNF546
  hgvsc: ENST00000593687.1:n.261-7_261-6delTT
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.84+1184_84+1185delTT
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.-31+1679_-31+1680delTT
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.7-7_7-6delTT
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.6+1262_6+1263delTT
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 7.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
reference allele: ATT
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

19-40511957-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40511957
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40511957
    reference: chr 19
allele count: 1
allele frequency: 8.250280509537325e-6
allele num: 121208
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.-30-46G>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.7-46G>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.76+6380G>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.85-46G>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.-30-46G>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.85-46G>A
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14794
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4356
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16924
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2511
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7696
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5445
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21164
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 2637
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genotype quality: GenotypeQuality
  all individuals: 11
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genotype quality: GenotypeQuality
  all individuals: 15
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genotype quality: GenotypeQuality
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 13
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12990
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genotype quality: GenotypeQuality
  all individuals: 215
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genotype quality: GenotypeQuality
  all individuals: 271
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genotype quality: GenotypeQuality
  all individuals: 4761
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genotype quality: GenotypeQuality
  all individuals: 1659
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD

19-40511962-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40511962
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40511962
    reference: chr 19
allele count: 1
allele frequency: 8.248239000973292e-6
allele num: 121238
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.85-41G>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.85-41G>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.-30-41G>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.-30-41G>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.7-41G>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.76+6385G>A
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5756
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4360
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
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genotype depth: GenotypeDepth
  all individuals: 7696
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14827
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 5.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 377
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genotype depth: GenotypeDepth
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  bin: 2.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 340
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 21925
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum

http://identifiers.org/exac.variant/19-40511966-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40511966
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40511966
    reference: chr 19
allele count: 1
allele frequency: 8.246334504312833e-6
allele num: 121266
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.-30-37C>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.7-37C>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.85-37C>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.85-37C>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.76+6389C>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.-30-37C>A
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17170
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7692
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4354
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14850
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5917
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8523
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22336
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1650
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2640
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

19-40511994-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40511994
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40511993
    reference: chr 19
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.-30-3delC
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.85-3delC
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.85-3delC
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.76+6423delC
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.-30-3delC
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.7-3delC
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 6019
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14881
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7679
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4344
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17474
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2505
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2636
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8570
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1646
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
hgvs: c.85-3delC
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: TC
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP

19-40512002-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40512002
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40512002
    reference: chr 19
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.-30-1G>T
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.-30-1G>T
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.76+6425G>T
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.85-1G>T
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.85-1G>T
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.7-1G>T
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2504
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4332
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17508
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14883
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7675
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6015
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3898
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3166
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12966
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2636
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8582
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
hgvs: c.85-1G>T
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

19-40512002-GC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40512002
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40512001
    reference: chr 19
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.-27delC
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.-27delC
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.76+6429delC
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.88delC
  hgvsp: ENSP00000472403.1:p.Arg30GlyfsTer17
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.88delC
  hgvsp: ENSP00000339823.3:p.Arg30GlyfsTer17
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.10delC
  hgvsp: ENSP00000469540.1:p.Arg4GlyfsTer17
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7675
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14883
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17508
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6015
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4332
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2504
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2636
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23032
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3898
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12966
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3166
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8582
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg30GlyfsTer17
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: GC
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

19-40512006-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40512006
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40512006
    reference: chr 19
allele count: 3
allele frequency: 2.471658317954126e-5
allele num: 121376
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.76+6429C>T
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.-27C>T
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.10C>T
  hgvsp: ENSP00000469540.1:p.Arg4Trp
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.88C>T
  hgvsp: ENSP00000472403.1:p.Arg30Trp
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.88C>T
  hgvsp: ENSP00000339823.3:p.Arg30Trp
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.-27C>T
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2503
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6013
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4332
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17516
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7674
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1834
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14880
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23047
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3897
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2636
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8582
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg30Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

19-40512007-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40512007
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40512007
    reference: chr 19
allele count: 2
allele frequency: 1.64766361299677e-5
allele num: 121384
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.11G>A
  hgvsp: ENSP00000469540.1:p.Arg4Gln
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.-26G>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.-26G>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.89G>A
  hgvsp: ENSP00000339823.3:p.Arg30Gln
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.89G>A
  hgvsp: ENSP00000472403.1:p.Arg30Gln
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.76+6430G>A
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17519
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6013
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7674
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14883
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4329
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1833
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2504
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8582
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2636
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23055
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1647
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg30Gln
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP

19-40512023-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40512023
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40512023
    reference: chr 19
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.-10G>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.76+6446G>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.27G>A
  hgvsp: ENST00000600094.1:c.27G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.-10G>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.105G>A
  hgvsp: ENST00000347077.4:c.105G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.105G>A
  hgvsp: ENST00000595225.1:c.105G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17525
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7674
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6021
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14880
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4329
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2503
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4716
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23076
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2636
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu35Leu
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

19-40512026-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40512026
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40512026
    reference: chr 19
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.-7C>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.-7C>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.108C>G
  hgvsp: ENSP00000472403.1:p.Cys36Trp
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.108C>G
  hgvsp: ENSP00000339823.3:p.Cys36Trp
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.76+6449C>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.30C>G
  hgvsp: ENSP00000469540.1:p.Cys10Trp
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6021
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2503
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14879
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17527
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7674
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4329
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3898
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2636
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1646
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12967
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8580
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Cys36Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

19-40512031-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40512031
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40512031
    reference: chr 19
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.113C>G
  hgvsp: ENSP00000472403.1:p.Ser38Cys
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.76+6454C>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.-2C>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.35C>G
  hgvsp: ENSP00000469540.1:p.Ser12Cys
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.113C>G
  hgvsp: ENSP00000339823.3:p.Ser38Cys
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.-2C>G
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7675
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6022
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17527
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14879
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2503
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2636
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4715
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12967
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3164
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8581
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser38Cys
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

19-40512039-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40512039
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40512039
    reference: chr 19
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.76+6462G>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.121G>A
  hgvsp: ENSP00000339823.3:p.Glu41Lys
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.121G>A
  hgvsp: ENSP00000472403.1:p.Glu41Lys
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.43G>A
  hgvsp: ENSP00000469540.1:p.Glu15Lys
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.7G>A
  hgvsp: ENSP00000469334.1:p.Glu3Lys
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.7G>A
  hgvsp: ENSP00000469168.1:p.Glu3Lys
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2503
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6022
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14876
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17530
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7674
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12967
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4714
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2636
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu41Lys
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: VQSLOD

19-40512051-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40512051
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40512051
    reference: chr 19
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.55G>C
  hgvsp: ENSP00000469540.1:p.Glu19Gln
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.76+6474G>C
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.19G>C
  hgvsp: ENSP00000469168.1:p.Glu7Gln
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.133G>C
  hgvsp: ENSP00000339823.3:p.Glu45Gln
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.19G>C
  hgvsp: ENSP00000469334.1:p.Glu7Gln
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.133G>C
  hgvsp: ENSP00000472403.1:p.Glu45Gln
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6018
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17533
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7673
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14878
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2503
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12966
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4714
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2636
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu45Gln
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/19-40512052-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40512052
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40512052
    reference: chr 19
allele count: 2
allele frequency: 1.647446457990115e-5
allele num: 121400
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.20A>C
  hgvsp: ENSP00000469168.1:p.Glu7Ala
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.56A>C
  hgvsp: ENSP00000469540.1:p.Glu19Ala
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.134A>C
  hgvsp: ENSP00000472403.1:p.Glu45Ala
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.76+6475A>C
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.134A>C
  hgvsp: ENSP00000339823.3:p.Glu45Ala
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.20A>C
  hgvsp: ENSP00000469334.1:p.Glu7Ala
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2503
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6018
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17533
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14878
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7673
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4328
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12965
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2636
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu45Ala
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

19-40512052-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40512052
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40512052
    reference: chr 19
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.56A>G
  hgvsp: ENSP00000469540.1:p.Glu19Gly
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.134A>G
  hgvsp: ENSP00000339823.3:p.Glu45Gly
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.134A>G
  hgvsp: ENSP00000472403.1:p.Glu45Gly
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.20A>G
  hgvsp: ENSP00000469334.1:p.Glu7Gly
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.20A>G
  hgvsp: ENSP00000469168.1:p.Glu7Gly
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.76+6475A>G
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6018
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7673
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17533
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14878
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2503
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1646
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2636
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4714
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Glu45Gly
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum

19-40512067-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40512067
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40512067
    reference: chr 19
allele count: 17
allele frequency: 1.400375630169034e-4
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.71G>A
  hgvsp: ENSP00000469540.1:p.Cys24Tyr
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.35G>A
  hgvsp: ENSP00000469168.1:p.Cys12Tyr
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.35G>A
  hgvsp: ENSP00000469334.1:p.Cys12Tyr
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.149G>A
  hgvsp: ENSP00000472403.1:p.Cys50Tyr
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.149G>A
  hgvsp: ENSP00000339823.3:p.Cys50Tyr
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.76+6490G>A
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6009
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17538
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14872
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2501
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4324
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7672
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8575
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23086
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Cys50Tyr
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

19-40512067-GTGGTTCTAAAACCA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40512067
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40512053
    reference: chr 19
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsp: ENSP00000469168.1:p.Ser14GlnfsTer7
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsp: ENSP00000469334.1:p.Ser14GlnfsTer7
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsp: ENSP00000339823.3:p.Ser52GlnfsTer7
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsp: ENSP00000472403.1:p.Ser52GlnfsTer7
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsp: ENSP00000469540.1:p.Ser26GlnfsTer7
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6009
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4324
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17538
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2501
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14872
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7672
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2634
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8575
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1644
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3896
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12972
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser52GlnfsTer7
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: GTGGTTCTAAAACCA
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

19-40512070-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40512070
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40512070
    reference: chr 19
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.152G>A
  hgvsp: ENSP00000339823.3:p.Gly51Asp
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.74G>A
  hgvsp: ENSP00000469540.1:p.Gly25Asp
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.152G>A
  hgvsp: ENSP00000472403.1:p.Gly51Asp
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.38G>A
  hgvsp: ENSP00000469334.1:p.Gly13Asp
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.76+6493G>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.38G>A
  hgvsp: ENSP00000469168.1:p.Gly13Asp
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2501
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4323
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14876
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7673
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6006
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17549
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23093
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2634
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gly51Asp
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff

19-40512070-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40512070
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40512070
    reference: chr 19
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.152G>C
  hgvsp: ENSP00000472403.1:p.Gly51Ala
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.38G>C
  hgvsp: ENSP00000469168.1:p.Gly13Ala
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.76+6493G>C
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.152G>C
  hgvsp: ENSP00000339823.3:p.Gly51Ala
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.38G>C
  hgvsp: ENSP00000469334.1:p.Gly13Ala
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.74G>C
  hgvsp: ENSP00000469540.1:p.Gly25Ala
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4323
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6006
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7673
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17549
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14876
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2501
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23093
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8577
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12957
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gly51Ala
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD

19-40512079-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40512079
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40512079
    reference: chr 19
allele count: 2
allele frequency: 1.647690761397901e-5
allele num: 121382
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.161C>T
  hgvsp: ENSP00000472403.1:p.Thr54Ile
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.47C>T
  hgvsp: ENSP00000469334.1:p.Thr16Ile
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.47C>T
  hgvsp: ENSP00000469168.1:p.Thr16Ile
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.161C>T
  hgvsp: ENSP00000339823.3:p.Thr54Ile
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.76+6502C>T
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.83C>T
  hgvsp: ENSP00000469540.1:p.Thr28Ile
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2501
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17547
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5999
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7674
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14874
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4323
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23091
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3164
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1644
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4712
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3894
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr54Ile
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

19-40512084-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40512084
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40512084
    reference: chr 19
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.52G>A
  hgvsp: ENSP00000469334.1:p.Ala18Thr
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.166G>A
  hgvsp: ENSP00000472403.1:p.Ala56Thr
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.88G>A
  hgvsp: ENSP00000469540.1:p.Ala30Thr
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.166G>A
  hgvsp: ENSP00000339823.3:p.Ala56Thr
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.52G>A
  hgvsp: ENSP00000469168.1:p.Ala18Thr
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.76+6507G>A
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7674
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17548
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14874
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4323
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2501
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5988
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3894
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12954
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3164
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4711
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala56Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

19-40512090-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40512090
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40512090
    reference: chr 19
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.57+1G>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.171+1G>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.57+1G>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.76+6513G>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.93+1G>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.171+1G>A
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5963
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14866
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7671
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4323
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2501
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17545
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3894
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1644
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3163
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23035
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: c.171+1G>A
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

19-40512095-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40512095
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40512095
    reference: chr 19
allele count: 2
allele frequency: 1.648098094798602e-5
allele num: 121352
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.57+6T>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.57+6T>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.171+6T>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.93+6T>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.76+6518T>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.171+6T>A
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17535
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4322
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14871
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7672
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2501
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5910
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3162
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3894
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1644
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: c.171+6T>A
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD

19-40512102-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40512102
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40512102
    reference: chr 19
allele count: 2
allele frequency: 1.649049323065253e-5
allele num: 121282
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.171+13T>C
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.76+6525T>C
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.57+13T>C
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.171+13T>C
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.57+13T>C
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.93+13T>C
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5742
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14855
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17499
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7671
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2499
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4321
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4699
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2631
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1642
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3149
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum

19-40512111-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40512111
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40512111
    reference: chr 19
allele count: 1
allele frequency: 8.252595441266279e-6
allele num: 121174
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.171+22T>C
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.57+22T>C
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.76+6534T>C
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.171+22T>C
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.93+22T>C
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.57+22T>C
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14737
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5428
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7645
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4320
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2498
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17291
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3877
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
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genotype quality: GenotypeQuality
  all individuals: 3138
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4683
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 227
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
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genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1639
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum

19-40512113-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40512113
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40512113
    reference: chr 19
allele count: 1
allele frequency: 8.256138438929344e-6
allele num: 121122
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.76+6536G>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.171+24G>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.93+24G>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.57+24G>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.57+24G>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.171+24G>A
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7636
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5261
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17170
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4323
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14674
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2495
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1639
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21841
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3119
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4677
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD

19-40512123-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40512123
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40512123
    reference: chr 19
allele count: 1
allele frequency: 8.265555775970376e-6
allele num: 120984
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.171+34G>T
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.57+34G>T
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.57+34G>T
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.93+34G>T
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.171+34G>T
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.76+6546G>T
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14148
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7531
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16168
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1919
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4551
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4612
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3852
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12924
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 930
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7926
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

19-40512124-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40512124
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40512124
    reference: chr 19
allele count: 1
allele frequency: 8.26541913940456e-6
allele num: 120986
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.57+35T>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.76+6547T>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.171+35T>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.57+35T>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.93+35T>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.171+35T>G
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14018
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7512
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4304
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4497
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15926
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1043
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4605
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1058
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3853
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7890
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2610
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: T
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

19-40512130-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40512130
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40512130
    reference: chr 19
allele count: 1
allele frequency: 8.277597510098669e-6
allele num: 120808
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.171+41A>T
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.57+41A>T
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.76+6553A>T
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.93+41A>T
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.171+41A>T
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.57+41A>T
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5023
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4277
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12794
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2484
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13771
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7355
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5212
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1126
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1441
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4571
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1646
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7265
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2969
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2156
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15467
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1150
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3833
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

19-40512133-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40512133
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40512133
    reference: chr 19
allele count: 1
allele frequency: 8.288575028181154e-6
allele num: 120648
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.171+44T>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.93+44T>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.171+44T>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.57+44T>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.57+44T>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.76+6556T>G
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12513
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11852
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4270
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7225
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7528
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5023
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3824
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2605
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12807
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2595
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1101
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2897
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1759
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/19-40512134-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40512134
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40512134
    reference: chr 19
allele count: 2
allele frequency: 1.658594838452863e-5
allele num: 120584
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.171+45C>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.171+45C>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.93+45C>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.57+45C>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.57+45C>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.76+6557C>A
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2484
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11779
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5018
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12544
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4265
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7586
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12920
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6572
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1113
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4520
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1585
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1765
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13128
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP

19-40513132-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40513132
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40513131
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 95640
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.58-47delT
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.172-47delT
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.172-47delT
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.58-47delT
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.94-47delT
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.76+7557delT
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10833
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18358
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13569
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7355
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
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genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1240
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 1195
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 3561
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 3245
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 1949
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 3209
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 777
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genotype quality: GenotypeQuality
  all individuals: 2760
  bin: 1.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4874
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genotype quality: GenotypeQuality
  all individuals: 7797
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
reference allele: CT
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/19-40513137-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40513137
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40513137
    reference: chr 19
allele count: 3
allele frequency: 3.107327077248151e-5
allele num: 96546
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.58-44A>C
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.76+7560A>C
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.94-44A>C
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.172-44A>C
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.172-44A>C
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.58-44A>C
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3664
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18083
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10770
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11383
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9635
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 206
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
  all individuals: 7639
  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2749
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2334
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genotype quality: GenotypeQuality
  all individuals: 530
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

19-40513140-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40513140
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40513140
    reference: chr 19
allele count: 1
allele frequency: 1.028531462777446e-5
allele num: 97226
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.172-41T>C
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.58-41T>C
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.94-41T>C
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.76+7563T>C
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.58-41T>C
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.172-41T>C
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4062
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14553
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7124
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17220
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10731
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11894
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 982
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7356
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13456
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2076
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 822
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 878
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5836
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

19-40513141-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40513141
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40513141
    reference: chr 19
allele count: 1
allele frequency: 1.02791825993997e-5
allele num: 97284
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.94-40A>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.172-40A>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.172-40A>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.58-40A>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.76+7564A>G
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.58-40A>G
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10703
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16012
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4222
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16634
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6176
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5309
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 825
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1825
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4533
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 885
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1761
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 944
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7122
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12095
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

19-40513145-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40513145
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 40513145
    reference: chr 19
allele count: 1
allele frequency: 1.016260162601626e-5
allele num: 98400
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000339823
  ensembl transcript: ENST00000347077
  gene symbol: ZNF546
  hgvsc: ENST00000347077.4:c.172-36T>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469540
  ensembl transcript: ENST00000600094
  gene symbol: ZNF546
  hgvsc: ENST00000600094.1:c.94-36T>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000470423
  ensembl transcript: ENST00000596894
  gene symbol: ZNF546
  hgvsc: ENST00000596894.1:c.76+7568T>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000472403
  ensembl transcript: ENST00000595225
  gene symbol: ZNF546
  hgvsc: ENST00000595225.1:c.172-36T>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469168
  ensembl transcript: ENST00000601138
  gene symbol: ZNF546
  hgvsc: ENST00000601138.1:c.58-36T>A
  variant of: http://identifiers.org/hgnc/28671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187187
  ensembl protein: ENSP00000469334
  ensembl transcript: ENST00000599504
  gene symbol: ZNF546
  hgvsc: ENST00000599504.1:c.58-36T>A
  variant of: http://identifiers.org/hgnc/28671
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3780
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14085
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20704
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10617
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4745
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3765
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1330
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19189
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12211
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1088
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3579
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 905
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum

GenotypeQuality
all individuals: 218
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2496
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 41063
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500420117632937e-5
allele num: 66648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.68e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.749e0

MQRankSum
type: SiteQuality
SIO_000300: -1.89e-1

DP
type: SiteQuality
SIO_000300: 1.747833e6

QD
type: SiteQuality
SIO_000300: 1.307e1

FS
type: SiteQuality
SIO_000300: 5.946e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.389999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.59e-1

MQ
type: SiteQuality
SIO_000300: 5.92e1

GenotypeQuality
all individuals: 2029
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4683
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 274
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 737
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1295
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41309
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.073120369245719e-5
allele num: 16466
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.48e-1

DP
type: SiteQuality
SIO_000300: 1.825233e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.04e0

MQRankSum
type: SiteQuality
SIO_000300: -2.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

MQ
type: SiteQuality
SIO_000300: 5.93e1

QD
type: SiteQuality
SIO_000300: 1.023e1

GenotypeQuality
all individuals: 83
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2025
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7158
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 736
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41759
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1706
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66634
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.645061728395061e-5
allele num: 10368
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.908e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.43e-1

DP
type: SiteQuality
SIO_000300: 1.830932e6

MQRankSum
type: SiteQuality
SIO_000300: -7.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.83e0

QD
type: SiteQuality
SIO_000300: 1.16e1

FS
type: SiteQuality
SIO_000300: 4.854e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.48e-1

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12103
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500420117632937e-5
allele num: 66648
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.307e1

VQSLOD
type: SiteQuality
SIO_000300: 2.68e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.389999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.749e0

FS
type: SiteQuality
SIO_000300: 5.946e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.59e-1

MQ
type: SiteQuality
SIO_000300: 5.92e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.747833e6

GenotypeQuality
all individuals: 12102
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2981
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 915
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
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East Asian
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European (Non-Finnish)
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African
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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MQRankSum
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ReadPosRankSum
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MQ
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QD
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InbreedingCoeff
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FS
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VQSLOD
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DP
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 2.999940001199976e-5
allele num: 66668
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South Asian
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European (Finnish)
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Latino
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East Asian
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Other
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African
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DP
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ClippingRankSum
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VQSLOD
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QD
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MQ
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InbreedingCoeff
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FS
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 1.499880009599232e-5
allele num: 66672
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European (Finnish)
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Other
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African
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Latino
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South Asian
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East Asian
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BaseQRankSum
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InbreedingCoeff
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FS
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MQ
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ReadPosRankSum
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VQSLOD
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MQRankSum
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DP
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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African
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East Asian
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Latino
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allele frequency: 0.0e0
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Other
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European (Non-Finnish)
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ReadPosRankSum
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MQRankSum
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FS
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VQSLOD
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DP
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InbreedingCoeff
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MQ
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BaseQRankSum
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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Latino
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African
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South Asian
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Other
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European (Non-Finnish)
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allele frequency: 7.498500299940011e-5
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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QD
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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FS
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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African
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European (Finnish)
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East Asian
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.499835018148004e-5
allele num: 66674
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DP
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QD
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InbreedingCoeff
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MQ
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FS
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
type: SiteQuality
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VQSLOD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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African
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Other
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Latino
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East Asian
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European (Non-Finnish)
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allele frequency: 4.499775011249437e-5
allele num: 66670
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South Asian
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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QD
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VQSLOD
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FS
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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East Asian
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South Asian
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Other
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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MQRankSum
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QD
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MQ
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FS
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ClippingRankSum
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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Other
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Latino
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East Asian
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African
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European (Non-Finnish)
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allele num: 66668
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VQSLOD
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ClippingRankSum
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DP
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MQRankSum
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InbreedingCoeff
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MQ
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ReadPosRankSum
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BaseQRankSum
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FS
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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Other
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South Asian
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European (Finnish)
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European (Non-Finnish)
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African
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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QD
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VQSLOD
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MQ
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FS
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DP
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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South Asian
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East Asian
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Latino
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European (Non-Finnish)
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MQ
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DP
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InbreedingCoeff
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MQRankSum
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QD
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BaseQRankSum
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FS
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.998770504093322e-5
allele num: 66694
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8652
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South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 8.652015919709292e-5
allele num: 11558
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African
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Other
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DP
type: SiteQuality
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QD
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MQ
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MQRankSum
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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FS
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ReadPosRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 10382
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Latino
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allele frequency: 0.0e0
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Other
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.499385252046661e-5
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
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DP
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MQ
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BaseQRankSum
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FS
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ClippingRankSum
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QD
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ReadPosRankSum
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SIO_000300: 1.66e0

MQRankSum
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SIO_000300: 1.2e-2

InbreedingCoeff
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SIO_000300: 0.0e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.499385252046661e-5
allele num: 66694
num of homozygotes: 0

East Asian
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South Asian
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Other
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MQ
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FS
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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DP
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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QD
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11560
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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InbreedingCoeff
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ClippingRankSum
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FS
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QD
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VQSLOD
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MQRankSum
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BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -9.3e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.049601151562406e-4
allele num: 66692
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
type: Population
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allele num: 906
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South Asian
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allele count: 0
allele frequency: 0.0e0
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African
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BaseQRankSum
type: SiteQuality
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MQRankSum
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MQ
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VQSLOD
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DP
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ReadPosRankSum
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QD
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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African
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South Asian
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Latino
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East Asian
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European (Finnish)
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ClippingRankSum
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QD
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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DP
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MQRankSum
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MQ
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FS
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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East Asian
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African
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European (Non-Finnish)
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European (Finnish)
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Other
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MQRankSum
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VQSLOD
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FS
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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DP
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ReadPosRankSum
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Other
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African
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European (Finnish)
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Latino
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East Asian
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South Asian
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InbreedingCoeff
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MQ
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ClippingRankSum
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FS
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VQSLOD
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BaseQRankSum
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DP
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MQRankSum
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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Latino
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European (Finnish)
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East Asian
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Other
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European (Non-Finnish)
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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MQRankSum
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DP
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QD
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BaseQRankSum
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MQ
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FS
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 6
allele frequency: 9.008197459688316e-5
allele num: 66606
num of homozygotes: 0

Latino
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num of homozygotes: 0

FS
type: SiteQuality
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DP
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VQSLOD
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QD
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 66590
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East Asian
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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MQ
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QD
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VQSLOD
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BaseQRankSum
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MQRankSum
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FS
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66590
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6610
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 9.674922600619196e-5
allele num: 10336
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Latino
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Other
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ReadPosRankSum
type: SiteQuality
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MQ
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DP
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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FS
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VQSLOD
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.502268425322237e-5
allele num: 66566
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South Asian
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Other
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ClippingRankSum
type: SiteQuality
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FS
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QD
type: SiteQuality
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ReadPosRankSum
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MQRankSum
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MQ
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 1
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allele num: 10264
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele num: 906
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
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BaseQRankSum
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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QD
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FS
type: SiteQuality
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DP
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ReadPosRankSum
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MQ
type: SiteQuality
SIO_000300: 5.965e1

MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.50934283213089e-5
allele num: 66254
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South Asian
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allele num: 16406
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African
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6592
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Latino
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num of homozygotes: 0

FS
type: SiteQuality
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QD
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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MQ
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DP
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6580
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Other
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East Asian
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African
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 65792
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Latino
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South Asian
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ReadPosRankSum
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ClippingRankSum
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DP
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MQ
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FS
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QD
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele num: 10960
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European (Non-Finnish)
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African
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East Asian
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South Asian
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Other
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European (Finnish)
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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QD
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DP
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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FS
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele num: 8098
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African
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European (Finnish)
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Latino
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Other
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South Asian
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allele frequency: 8.113843465235301e-3
allele num: 16022
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European (Non-Finnish)
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allele frequency: 2.213858755811379e-4
allele num: 63238
num of homozygotes: 0

DP
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MQRankSum
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FS
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ReadPosRankSum
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QD
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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MQ
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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African
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European (Non-Finnish)
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South Asian
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Other
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QD
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FS
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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DP
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MQRankSum
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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European (Finnish)
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African
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European (Non-Finnish)
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MQ
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MQRankSum
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QD
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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DP
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FS
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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East Asian
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African
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Latino
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Other
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VQSLOD
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ClippingRankSum
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FS
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MQ
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BaseQRankSum
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DP
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MQRankSum
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InbreedingCoeff
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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African
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Latino
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East Asian
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Other
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QD
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MQRankSum
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DP
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BaseQRankSum
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FS
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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MQ
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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Other
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European (Finnish)
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African
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South Asian
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European (Non-Finnish)
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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QD
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MQ
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DP
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ReadPosRankSum
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BaseQRankSum
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FS
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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East Asian
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European (Finnish)
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Latino
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MQRankSum
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QD
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BaseQRankSum
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FS
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ClippingRankSum
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InbreedingCoeff
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DP
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ReadPosRankSum
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MQ
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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East Asian
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European (Non-Finnish)
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Other
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South Asian
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FS
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ReadPosRankSum
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ClippingRankSum
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MQ
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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QD
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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European (Non-Finnish)
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European (Finnish)
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Other
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East Asian
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DP
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MQRankSum
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ClippingRankSum
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QD
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MQ
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FS
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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African
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European (Finnish)
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Latino
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ClippingRankSum
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QD
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ReadPosRankSum
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FS
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VQSLOD
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MQ
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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South Asian
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African
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ReadPosRankSum
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DP
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MQRankSum
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MQ
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InbreedingCoeff
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FS
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QD
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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East Asian
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African
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European (Finnish)
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MQRankSum
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BaseQRankSum
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SIO_000300: 2.21e0

VQSLOD
type: SiteQuality
SIO_000300: -1.509e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.0e-3

QD
type: SiteQuality
SIO_000300: 1.238e1

FS
type: SiteQuality
SIO_000300: 1.1845e1

DP
type: SiteQuality
SIO_000300: 2.320383e6

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.947e1

VQSLOD
type: SiteQuality
SIO_000300: 9.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.128e0

DP
type: SiteQuality
SIO_000300: 2.319978e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 3.555e0

MQRankSum
type: SiteQuality
SIO_000300: 8.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.218e0

QD
type: SiteQuality
SIO_000300: 1.323e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.502e1

VQSLOD
type: SiteQuality
SIO_000300: -2.546e0

FS
type: SiteQuality
SIO_000300: 9.389999999999999e-1

BaseQRankSum
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SIO_000300: -5.241e0

MQRankSum
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SIO_000300: 3.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.216e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.872e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

DP
type: SiteQuality
SIO_000300: 2.319985e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.353e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e0

FS
type: SiteQuality
SIO_000300: 1.3885e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.33e0

MQ
type: SiteQuality
SIO_000300: 5.903e1

MQRankSum
type: SiteQuality
SIO_000300: -8.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -9.27e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.019e0

DP
type: SiteQuality
SIO_000300: 2.319975e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 8582
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.029e0

MQRankSum
type: SiteQuality
SIO_000300: -1.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.62e-1

FS
type: SiteQuality
SIO_000300: 2.577e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.01e-1

DP
type: SiteQuality
SIO_000300: 2.319915e6

QD
type: SiteQuality
SIO_000300: 1.13e1

VQSLOD
type: SiteQuality
SIO_000300: 1.21e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.57e-1

QD
type: SiteQuality
SIO_000300: 1.086e1

FS
type: SiteQuality
SIO_000300: 4.768e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.319871e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.4e0

MQRankSum
type: SiteQuality
SIO_000300: 1.51e0

VQSLOD
type: SiteQuality
SIO_000300: 2.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.830000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.945e1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997152704930316e-5
allele num: 66730
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.254e1

BaseQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.88e-1

MQ
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SIO_000300: 5.97e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.24e-1

FS
type: SiteQuality
SIO_000300: 4.131e0

MQRankSum
type: SiteQuality
SIO_000300: 6.5e-1

InbreedingCoeff
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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Latino
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allele count: 0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.24e-1

MQ
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MQRankSum
type: SiteQuality
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BaseQRankSum
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QD
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DP
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InbreedingCoeff
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VQSLOD
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FS
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ClippingRankSum
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GenotypeQuality
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variant carriers: 17

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

African
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 11
allele frequency: 1.648483395276346e-4
allele num: 66728
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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Latino
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allele count: 6
allele frequency: 5.182242183451373e-4
allele num: 11578
num of homozygotes: 0

South Asian
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MQRankSum
type: SiteQuality
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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QD
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DP
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
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MQ
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

African
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East Asian
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Latino
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allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

South Asian
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MQ
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SIO_000300: 5.96e1

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
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VQSLOD
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DP
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ClippingRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

Latino
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num of homozygotes: 0

South Asian
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European (Finnish)
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African
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
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FS
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ReadPosRankSum
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DP
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VQSLOD
type: SiteQuality
SIO_000300: 1.48e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2634
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.18e0

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

VQSLOD
type: SiteQuality
SIO_000300: 1.48e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

DP
type: SiteQuality
SIO_000300: 2.319624e6

FS
type: SiteQuality
SIO_000300: 2.209e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.466e1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 12957
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variant carriers: 2

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.31107002542177e-4
allele num: 8654
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.91e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.3e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.07e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.29e0

MQ
type: SiteQuality
SIO_000300: 5.924e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.103e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.319516e6

QD
type: SiteQuality
SIO_000300: 1.235e1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1644
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.982e-1

FS
type: SiteQuality
SIO_000300: 6.3e0

DP
type: SiteQuality
SIO_000300: 2.3192e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.143e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.84e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

MQ
type: SiteQuality
SIO_000300: 5.925e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

QD
type: SiteQuality
SIO_000300: 8.59e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.51285930408472e-4
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.850000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.235e1

FS
type: SiteQuality
SIO_000300: 5.998e0

MQ
type: SiteQuality
SIO_000300: 5.947e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.617e0

MQRankSum
type: SiteQuality
SIO_000300: 3.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.1e-2

DP
type: SiteQuality
SIO_000300: 2.318668e6

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 12951
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2631
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.311604253351826e-4
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.952e1

MQRankSum
type: SiteQuality
SIO_000300: -1.041e0

FS
type: SiteQuality
SIO_000300: 6.397e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.69e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.69e-1

DP
type: SiteQuality
SIO_000300: 2.318036e6

QD
type: SiteQuality
SIO_000300: 1.305e1

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 8525
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variant carriers: 0

GenotypeQuality
all individuals: 3892
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.00048007681229e-5
allele num: 66656
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.3e-2

FS
type: SiteQuality
SIO_000300: 2.626e0

QD
type: SiteQuality
SIO_000300: 1.495e1

DP
type: SiteQuality
SIO_000300: 2.315385e6

MQ
type: SiteQuality
SIO_000300: 5.93e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.52e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 4.99e0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12940
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8433
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50159168718842e-5
allele num: 66596
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.604e0

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQ
type: SiteQuality
SIO_000300: 5.964e1

QD
type: SiteQuality
SIO_000300: 1.265e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.51e-1

DP
type: SiteQuality
SIO_000300: 2.306849e6

FS
type: SiteQuality
SIO_000300: 4.256e0

MQRankSum
type: SiteQuality
SIO_000300: -3.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.64e0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 315
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variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.653513326410523e-5
allele num: 11556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.514e0

MQ
type: SiteQuality
SIO_000300: 5.906e1

MQRankSum
type: SiteQuality
SIO_000300: 2.76e-1

FS
type: SiteQuality
SIO_000300: 4.55e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.49e-1

DP
type: SiteQuality
SIO_000300: 2.302393e6

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.344e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.66e-1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1629
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504121292341014e-5
allele num: 66484
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.925e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

MQ
type: SiteQuality
SIO_000300: 5.977e1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.94e-1

QD
type: SiteQuality
SIO_000300: 1.325e1

MQRankSum
type: SiteQuality
SIO_000300: -1.84e-1

DP
type: SiteQuality
SIO_000300: 2.273943e6

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 979
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variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66482
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.620935154897056e-5
allele num: 10394
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.059e0

DP
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.316e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.17e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.853e1

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 3.25e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 12923
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2608
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.169590643274854e-4
allele num: 8550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.215e1

VQSLOD
type: SiteQuality
SIO_000300: 3.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.27e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.462e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.27e-1

DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.92e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2597
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1482
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.087909411907951e-5
allele num: 16426
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66300
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.208072e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.86e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.439e-1

MQ
type: SiteQuality
SIO_000300: 5.875e1

QD
type: SiteQuality
SIO_000300: 1.418e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.25e-1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2600
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3815
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2866
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1615
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.736111111111111e-4
allele num: 11520
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66268
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16410
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.86e-1

QD
type: SiteQuality
SIO_000300: 8.57e0

VQSLOD
type: SiteQuality
SIO_000300: 5.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.68e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

MQRankSum
type: SiteQuality
SIO_000300: 2.4e-2

FS
type: SiteQuality
SIO_000300: 1.877e0

DP
type: SiteQuality
SIO_000300: 2.207108e6

GenotypeQuality
all individuals: 644
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 738
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53690
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6384
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5954
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9268
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11334
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8230
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.119e1

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.652e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.12939e6

QD
type: SiteQuality
SIO_000300: 1.007e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 813
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 1

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.847404396822464e-5
allele num: 54130
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.418379685610641e-4
allele num: 8270
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9398
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5972
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

FS
type: SiteQuality
SIO_000300: 1.889e0

MQRankSum
type: SiteQuality
SIO_000300: -2.09e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.95e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.74e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.95e-1

QD
type: SiteQuality
SIO_000300: 1.436e1

DP
type: SiteQuality
SIO_000300: 1.160482e6

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 301
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9456
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11662
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.835266480692997e-5
allele num: 54488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5992
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

DP
type: SiteQuality
SIO_000300: 1.188569e6

QD
type: SiteQuality
SIO_000300: 1.264e1

MQ
type: SiteQuality
SIO_000300: 5.875e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.93e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -9.354e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.85e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.93e-1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 360
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5994
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9460
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8312
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54560
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.533272002453235e-4
allele num: 6522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.195e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.191e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e0

QD
type: SiteQuality
SIO_000300: 1.769e1

MQRankSum
type: SiteQuality
SIO_000300: -1.919e0

VQSLOD
type: SiteQuality
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BaseQRankSum
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SIO_000300: 3.01e0

InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.201826e6

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6650
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.814618567177179e-5
allele num: 55108
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11858
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9584
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6016
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.72e-1

DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -3.64e-1

MQ
type: SiteQuality
SIO_000300: 5.878e1

ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -1.4e-3

BaseQRankSum
type: SiteQuality
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