18-21353568-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21353568
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 21353568
    reference: chr 18
allele count: 2
allele frequency: 6.272345229881452e-5
allele num: 31886
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053747
  ensembl protein: ENSP00000324532
  ensembl transcript: ENST00000313654
  gene symbol: LAMA3
  hgvsc: ENST00000313654.9:c.1273+17G>A
  variant of: http://identifiers.org/hgnc/6483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053747
  ensembl protein: ENSP00000468316
  ensembl transcript: ENST00000585600
  gene symbol: LAMA3
  hgvsc: ENST00000585600.1:c.1273+17G>A
  variant of: http://identifiers.org/hgnc/6483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053747
  ensembl protein: ENSP00000382432
  ensembl transcript: ENST00000399516
  gene symbol: LAMA3
  hgvsc: ENST00000399516.3:c.1273+17G>A
  variant of: http://identifiers.org/hgnc/6483
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21796
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5037
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21378
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2091
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19812
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21946
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2462
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8508
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

18-21353569-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21353569
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 21353569
    reference: chr 18
allele count: 1
allele frequency: 3.216675244467319e-5
allele num: 31088
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053747
  ensembl protein: ENSP00000468316
  ensembl transcript: ENST00000585600
  gene symbol: LAMA3
  hgvsc: ENST00000585600.1:c.1273+18T>G
  variant of: http://identifiers.org/hgnc/6483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053747
  ensembl protein: ENSP00000382432
  ensembl transcript: ENST00000399516
  gene symbol: LAMA3
  hgvsc: ENST00000399516.3:c.1273+18T>G
  variant of: http://identifiers.org/hgnc/6483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053747
  ensembl protein: ENSP00000324532
  ensembl transcript: ENST00000313654
  gene symbol: LAMA3
  hgvsc: ENST00000313654.9:c.1273+18T>G
  variant of: http://identifiers.org/hgnc/6483
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20506
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22874
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4762
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 894
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2709
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22973
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2744
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8508
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17727
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 866
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

18-21353571-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21353571
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 21353571
    reference: chr 18
allele count: 0
allele frequency: 0.0e0
allele num: 31052
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053747
  ensembl protein: ENSP00000324532
  ensembl transcript: ENST00000313654
  gene symbol: LAMA3
  hgvsc: ENST00000313654.9:c.1273+20G>A
  variant of: http://identifiers.org/hgnc/6483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053747
  ensembl protein: ENSP00000382432
  ensembl transcript: ENST00000399516
  gene symbol: LAMA3
  hgvsc: ENST00000399516.3:c.1273+20G>A
  variant of: http://identifiers.org/hgnc/6483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053747
  ensembl protein: ENSP00000468316
  ensembl transcript: ENST00000585600
  gene symbol: LAMA3
  hgvsc: ENST00000585600.1:c.1273+20G>A
  variant of: http://identifiers.org/hgnc/6483
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20466
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22934
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4766
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18389
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8522
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 993
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 929
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1969
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2668
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

18-21353571-GGTGTATCTTAGCCTGT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21353571
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 21353555
    reference: chr 18
allele count: 8
allele frequency: 2.576323586242432e-4
allele num: 31052
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053747
  ensembl protein: ENSP00000324532
  ensembl transcript: ENST00000313654
  gene symbol: LAMA3
  variant of: http://identifiers.org/hgnc/6483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053747
  ensembl protein: ENSP00000382432
  ensembl transcript: ENST00000399516
  gene symbol: LAMA3
  variant of: http://identifiers.org/hgnc/6483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053747
  ensembl protein: ENSP00000468316
  ensembl transcript: ENST00000585600
  gene symbol: LAMA3
  variant of: http://identifiers.org/hgnc/6483
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22934
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20466
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4766
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1969
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 929
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 993
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23102
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18389
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2668
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8522
  bin: 9.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
reference allele: GGTGTATCTTAGCCTGT
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

18-21353576-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21353576
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 21353576
    reference: chr 18
allele count: 0
allele frequency: 0.0e0
allele num: 29676
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053747
  ensembl protein: ENSP00000324532
  ensembl transcript: ENST00000313654
  gene symbol: LAMA3
  hgvsc: ENST00000313654.9:c.1273+25A>G
  variant of: http://identifiers.org/hgnc/6483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053747
  ensembl protein: ENSP00000468316
  ensembl transcript: ENST00000585600
  gene symbol: LAMA3
  hgvsc: ENST00000585600.1:c.1273+25A>G
  variant of: http://identifiers.org/hgnc/6483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053747
  ensembl protein: ENSP00000382432
  ensembl transcript: ENST00000399516
  gene symbol: LAMA3
  hgvsc: ENST00000399516.3:c.1273+25A>G
  variant of: http://identifiers.org/hgnc/6483
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
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genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1086
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 765
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3253
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15450
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 176
  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8505
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum

18-21353578-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21353578
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 21353578
    reference: chr 18
allele count: 0
allele frequency: 0.0e0
allele num: 29076
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053747
  ensembl protein: ENSP00000324532
  ensembl transcript: ENST00000313654
  gene symbol: LAMA3
  hgvsc: ENST00000313654.9:c.1273+27C>T
  variant of: http://identifiers.org/hgnc/6483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053747
  ensembl protein: ENSP00000382432
  ensembl transcript: ENST00000399516
  gene symbol: LAMA3
  hgvsc: ENST00000399516.3:c.1273+27C>T
  variant of: http://identifiers.org/hgnc/6483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053747
  ensembl protein: ENSP00000468316
  ensembl transcript: ENST00000585600
  gene symbol: LAMA3
  hgvsc: ENST00000585600.1:c.1273+27C>T
  variant of: http://identifiers.org/hgnc/6483
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25407
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
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  bin: 7.75e1
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genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/18-21353596-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21353596
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 21353596
    reference: chr 18
allele count: 0
allele frequency: 0.0e0
allele num: 25590
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053747
  ensembl protein: ENSP00000382432
  ensembl transcript: ENST00000399516
  gene symbol: LAMA3
  hgvsc: ENST00000399516.3:c.1273+45C>A
  variant of: http://identifiers.org/hgnc/6483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053747
  ensembl protein: ENSP00000324532
  ensembl transcript: ENST00000313654
  gene symbol: LAMA3
  hgvsc: ENST00000313654.9:c.1273+45C>A
  variant of: http://identifiers.org/hgnc/6483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053747
  ensembl protein: ENSP00000468316
  ensembl transcript: ENST00000585600
  gene symbol: LAMA3
  hgvsc: ENST00000585600.1:c.1273+45C>A
  variant of: http://identifiers.org/hgnc/6483
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2297
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

18-21353597-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21353597
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 21353597
    reference: chr 18
allele count: 0
allele frequency: 0.0e0
allele num: 25502
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053747
  ensembl protein: ENSP00000324532
  ensembl transcript: ENST00000313654
  gene symbol: LAMA3
  hgvsc: ENST00000313654.9:c.1273+46C>T
  variant of: http://identifiers.org/hgnc/6483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053747
  ensembl protein: ENSP00000468316
  ensembl transcript: ENST00000585600
  gene symbol: LAMA3
  hgvsc: ENST00000585600.1:c.1273+46C>T
  variant of: http://identifiers.org/hgnc/6483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053747
  ensembl protein: ENSP00000382432
  ensembl transcript: ENST00000399516
  gene symbol: LAMA3
  hgvsc: ENST00000399516.3:c.1273+46C>T
  variant of: http://identifiers.org/hgnc/6483
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27293
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
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  bin: 5.25e1
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genotype depth: GenotypeDepth
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  bin: 7.75e1
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genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
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  variant carriers: 0
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  bin: 8.25e1
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

18-21353599-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21353599
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 21353599
    reference: chr 18
allele count: 1
allele frequency: 3.978041212506961e-5
allele num: 25138
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053747
  ensembl protein: ENSP00000468316
  ensembl transcript: ENST00000585600
  gene symbol: LAMA3
  hgvsc: ENST00000585600.1:c.1273+48C>T
  variant of: http://identifiers.org/hgnc/6483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053747
  ensembl protein: ENSP00000324532
  ensembl transcript: ENST00000313654
  gene symbol: LAMA3
  hgvsc: ENST00000313654.9:c.1273+48C>T
  variant of: http://identifiers.org/hgnc/6483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053747
  ensembl protein: ENSP00000382432
  ensembl transcript: ENST00000399516
  gene symbol: LAMA3
  hgvsc: ENST00000399516.3:c.1273+48C>T
  variant of: http://identifiers.org/hgnc/6483
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27270
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17031
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4997
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24247
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6233
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4995
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8506
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5042
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP

18-21353602-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21353602
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 21353602
    reference: chr 18
allele count: 20
allele frequency: 8.00832866180828e-4
allele num: 24974
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053747
  ensembl protein: ENSP00000324532
  ensembl transcript: ENST00000313654
  gene symbol: LAMA3
  hgvsc: ENST00000313654.9:c.1273+51C>T
  variant of: http://identifiers.org/hgnc/6483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053747
  ensembl protein: ENSP00000382432
  ensembl transcript: ENST00000399516
  gene symbol: LAMA3
  hgvsc: ENST00000399516.3:c.1273+51C>T
  variant of: http://identifiers.org/hgnc/6483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053747
  ensembl protein: ENSP00000468316
  ensembl transcript: ENST00000585600
  gene symbol: LAMA3
  hgvsc: ENST00000585600.1:c.1273+51C>T
  variant of: http://identifiers.org/hgnc/6483
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16990
  bin: 7.5e0
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27332
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5398
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6278
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23854
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8508
  bin: 9.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4736
  bin: 2.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5224
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 7.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

18-21353603-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21353603
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 21353603
    reference: chr 18
allele count: 1
allele frequency: 4.045634760093859e-5
allele num: 24718
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053747
  ensembl protein: ENSP00000468316
  ensembl transcript: ENST00000585600
  gene symbol: LAMA3
  hgvsc: ENST00000585600.1:c.1273+52G>A
  variant of: http://identifiers.org/hgnc/6483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053747
  ensembl protein: ENSP00000324532
  ensembl transcript: ENST00000313654
  gene symbol: LAMA3
  hgvsc: ENST00000313654.9:c.1273+52G>A
  variant of: http://identifiers.org/hgnc/6483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053747
  ensembl protein: ENSP00000382432
  ensembl transcript: ENST00000399516
  gene symbol: LAMA3
  hgvsc: ENST00000399516.3:c.1273+52G>A
  variant of: http://identifiers.org/hgnc/6483
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2065
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27357
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16956
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6560
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22694
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6066
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6303
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8507
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3879
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff

16-67401312-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67401312
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67401312
    reference: chr 16
allele count: 1
allele frequency: 8.276364358664525e-6
allele num: 120826
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.773-3535C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.784C>T
  hgvsp: ENST00000435835.3:c.784C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.784C>T
  hgvsp: ENST00000563189.1:c.784C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.*473C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.1147C>T
  hgvsp: ENST00000329956.6:c.1147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.343C>T
  hgvsp: ENST00000290940.7:c.343C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-232-3535C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.683-3535C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.215-7838C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.*195-3535C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.340-3535C>T
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10108
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3025
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9832
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9682
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9065
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu383Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/16-67401321-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67401321
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67401321
    reference: chr 16
allele count: 1
allele frequency: 8.285278716776033e-6
allele num: 120696
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.793C>A
  hgvsp: ENSP00000455103.1:p.Pro265Thr
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.*482C>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.793C>A
  hgvsp: ENSP00000411122.3:p.Pro265Thr
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.683-3526C>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.215-7829C>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.352C>A
  hgvsp: ENSP00000290940.4:p.Pro118Thr
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.1156C>A
  hgvsp: ENSP00000329943.6:p.Pro386Thr
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.*195-3526C>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.340-3526C>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.773-3526C>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-232-3526C>A
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9670
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9064
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3023
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7335
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10115
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9710
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Pro386Thr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

16-67401321-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67401321
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67401321
    reference: chr 16
allele count: 1
allele frequency: 8.285278716776033e-6
allele num: 120696
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.*195-3526C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.793C>T
  hgvsp: ENSP00000411122.3:p.Pro265Ser
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.215-7829C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.683-3526C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.773-3526C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.*482C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.793C>T
  hgvsp: ENSP00000455103.1:p.Pro265Ser
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.340-3526C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.1156C>T
  hgvsp: ENSP00000329943.6:p.Pro386Ser
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-232-3526C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.352C>T
  hgvsp: ENSP00000290940.4:p.Pro118Ser
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9710
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7335
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9064
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3023
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10115
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9670
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Pro386Ser
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

16-67401322-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67401322
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67401322
    reference: chr 16
allele count: 1
allele frequency: 8.288162845823595e-6
allele num: 120654
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.773-3525C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.340-3525C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.*195-3525C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.794C>G
  hgvsp: ENSP00000455103.1:p.Pro265Arg
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.1157C>G
  hgvsp: ENSP00000329943.6:p.Pro386Arg
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.215-7828C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.353C>G
  hgvsp: ENSP00000290940.4:p.Pro118Arg
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.683-3525C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.794C>G
  hgvsp: ENSP00000411122.3:p.Pro265Arg
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.*483C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-232-3525C>G
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9660
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7333
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9671
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9063
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10117
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3023
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro386Arg
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

16-67401338-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67401338
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67401338
    reference: chr 16
allele count: 1
allele frequency: 8.356732183446986e-6
allele num: 119664
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.215-7812A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.*499A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.683-3509A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.810A>G
  hgvsp: ENST00000563189.1:c.810A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-232-3509A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.773-3509A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.369A>G
  hgvsp: ENST00000290940.7:c.369A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.1173A>G
  hgvsp: ENST00000329956.6:c.1173A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.*195-3509A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.810A>G
  hgvsp: ENST00000435835.3:c.810A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.340-3509A>G
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10077
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8804
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9401
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9054
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7333
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3024
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly391Gly
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: A
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

16-67401340-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67401340
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67401340
    reference: chr 16
allele count: 1
allele frequency: 8.358268835358821e-6
allele num: 119642
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.*501G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-232-3507G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.1175G>A
  hgvsp: ENSP00000329943.6:p.Arg392Lys
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.*195-3507G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.812G>A
  hgvsp: ENSP00000411122.3:p.Arg271Lys
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.340-3507G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.371G>A
  hgvsp: ENSP00000290940.4:p.Arg124Lys
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.683-3507G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.812G>A
  hgvsp: ENSP00000455103.1:p.Arg271Lys
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.215-7810G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.773-3507G>A
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8805
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10066
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4880
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3024
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7332
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9401
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9056
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg392Lys
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ

18-21355712-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21355712
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 21355712
    reference: chr 18
allele count: 4
allele frequency: 3.335723935487099e-5
allele num: 119914
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053747
  ensembl protein: ENSP00000324532
  ensembl transcript: ENST00000313654
  gene symbol: LAMA3
  hgvsc: ENST00000313654.9:c.1274-44G>A
  variant of: http://identifiers.org/hgnc/6483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053747
  ensembl protein: ENSP00000468316
  ensembl transcript: ENST00000585600
  gene symbol: LAMA3
  hgvsc: ENST00000585600.1:c.1274-44G>A
  variant of: http://identifiers.org/hgnc/6483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053747
  ensembl protein: ENSP00000382432
  ensembl transcript: ENST00000399516
  gene symbol: LAMA3
  hgvsc: ENST00000399516.3:c.1274-44G>A
  variant of: http://identifiers.org/hgnc/6483
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2513
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5260
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13014
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4685
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8782
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13926
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1890
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14283
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1157
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4607
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2332
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1542
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14060
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3581
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1761
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6517
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3298
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2428
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1217
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD

18-21355718-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21355718
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 21355718
    reference: chr 18
allele count: 1
allele frequency: 8.334027835652971e-6
allele num: 119990
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053747
  ensembl protein: ENSP00000468316
  ensembl transcript: ENST00000585600
  gene symbol: LAMA3
  hgvsc: ENST00000585600.1:c.1274-38T>C
  variant of: http://identifiers.org/hgnc/6483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053747
  ensembl protein: ENSP00000324532
  ensembl transcript: ENST00000313654
  gene symbol: LAMA3
  hgvsc: ENST00000313654.9:c.1274-38T>C
  variant of: http://identifiers.org/hgnc/6483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053747
  ensembl protein: ENSP00000382432
  ensembl transcript: ENST00000399516
  gene symbol: LAMA3
  hgvsc: ENST00000399516.3:c.1274-38T>C
  variant of: http://identifiers.org/hgnc/6483
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3334
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4703
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1890
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13369
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15424
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9029
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2447
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3697
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3402
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14298
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2471
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1369
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6789
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1807
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1068
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 732
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4703
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16006
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1508
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

18-21355725-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21355725
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 21355725
    reference: chr 18
allele count: 2
allele frequency: 1.666972278251013e-5
allele num: 119978
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053747
  ensembl protein: ENSP00000324532
  ensembl transcript: ENST00000313654
  gene symbol: LAMA3
  hgvsc: ENST00000313654.9:c.1274-31C>T
  variant of: http://identifiers.org/hgnc/6483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053747
  ensembl protein: ENSP00000382432
  ensembl transcript: ENST00000399516
  gene symbol: LAMA3
  hgvsc: ENST00000399516.3:c.1274-31C>T
  variant of: http://identifiers.org/hgnc/6483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053747
  ensembl protein: ENSP00000468316
  ensembl transcript: ENST00000585600
  gene symbol: LAMA3
  hgvsc: ENST00000585600.1:c.1274-31C>T
  variant of: http://identifiers.org/hgnc/6483
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13790
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1962
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2462
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9374
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4744
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16264
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1890
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1181
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3794
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6894
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1861
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 645
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16870
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14320
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2511
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4815
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD

18-21355726-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21355726
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 21355726
    reference: chr 18
allele count: 2
allele frequency: 1.666777785185679e-5
allele num: 119992
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053747
  ensembl protein: ENSP00000468316
  ensembl transcript: ENST00000585600
  gene symbol: LAMA3
  hgvsc: ENST00000585600.1:c.1274-30G>C
  variant of: http://identifiers.org/hgnc/6483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053747
  ensembl protein: ENSP00000324532
  ensembl transcript: ENST00000313654
  gene symbol: LAMA3
  hgvsc: ENST00000313654.9:c.1274-30G>C
  variant of: http://identifiers.org/hgnc/6483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053747
  ensembl protein: ENSP00000382432
  ensembl transcript: ENST00000399516
  gene symbol: LAMA3
  hgvsc: ENST00000399516.3:c.1274-30G>C
  variant of: http://identifiers.org/hgnc/6483
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13922
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9488
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2469
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16372
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4756
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 871
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17236
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4866
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1867
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1081
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3496
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14334
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6937
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3833
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2521
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

16-67401341-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67401341
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67401341
    reference: chr 16
allele count: 1
allele frequency: 8.370722560771445e-6
allele num: 119464
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.215-7809G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.1176G>A
  hgvsp: ENST00000329956.6:c.1176G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.813G>A
  hgvsp: ENST00000435835.3:c.813G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.683-3506G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.340-3506G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-232-3506G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.773-3506G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.*502G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.813G>A
  hgvsp: ENST00000563189.1:c.813G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.372G>A
  hgvsp: ENST00000290940.7:c.372G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.*195-3506G>A
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9352
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9055
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8628
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7332
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4880
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3024
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10043
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg392Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff

16-67401341-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67401341
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67401341
    reference: chr 16
allele count: 1
allele frequency: 8.370722560771445e-6
allele num: 119464
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.813G>T
  hgvsp: ENSP00000411122.3:p.Arg271Ser
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.*195-3506G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.215-7809G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.372G>T
  hgvsp: ENSP00000290940.4:p.Arg124Ser
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.683-3506G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.1176G>T
  hgvsp: ENSP00000329943.6:p.Arg392Ser
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.813G>T
  hgvsp: ENSP00000455103.1:p.Arg271Ser
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.*502G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.340-3506G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-232-3506G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.773-3506G>T
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7332
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10043
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9055
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4880
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9352
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3024
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg392Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

16-67401347-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67401347
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67401347
    reference: chr 16
allele count: 1
allele frequency: 8.387150884844418e-6
allele num: 119230
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.773-3500G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.*508G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.378G>A
  hgvsp: ENST00000290940.7:c.378G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.1182G>A
  hgvsp: ENST00000329956.6:c.1182G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.683-3500G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.340-3500G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.215-7803G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.*195-3500G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.819G>A
  hgvsp: ENST00000435835.3:c.819G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-232-3500G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.819G>A
  hgvsp: ENST00000563189.1:c.819G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3025
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9264
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8438
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7327
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9048
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10013
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu394Leu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD

16-67401354-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67401354
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67401354
    reference: chr 16
allele count: 1
allele frequency: 8.439245868989148e-6
allele num: 118494
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.826A>G
  hgvsp: ENSP00000411122.3:p.Ser276Gly
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.340-3493A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.826A>G
  hgvsp: ENSP00000455103.1:p.Ser276Gly
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.385A>G
  hgvsp: ENSP00000290940.4:p.Ser129Gly
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.*515A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.1189A>G
  hgvsp: ENSP00000329943.6:p.Ser397Gly
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.215-7796A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.683-3493A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.*195-3493A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-232-3493A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.773-3493A>G
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9974
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3025
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7326
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8937
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9044
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7773
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser397Gly
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS

16-67401356-T-TTCAGGTAACAGCTTCCTGTCAGTTTACAGGTCTTCTTCA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67401356
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67401395
    reference: chr 16
allele count: 37
allele frequency: 3.124947213729498e-4
allele num: 118402
alternate allele: TTCAGGTAACAGCTTCCTGTCAGTTTACAGGTCTTCTTCA
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 1907
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9972
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4876
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8876
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9043
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7673
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3030
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 7327
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3657
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

16-67401370-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67401370
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67401370
    reference: chr 16
allele count: 1
allele frequency: 8.554173581290312e-6
allele num: 116902
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.832+10T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.391+10T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.340-3477T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-232-3477T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.1195+10T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.215-7780T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.*195-3477T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.683-3477T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.773-3477T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.*521+10T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.832+10T>C
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3113
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9918
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9044
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8273
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3027
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4874
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7325
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6221
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

16-67401404-AAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67401404
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67401402
    reference: chr 16
allele count: 1
allele frequency: 8.989895357618037e-6
allele num: 111236
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.773-3441_773-3440delGA
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.215-7744_215-7743delGA
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-232-3441_-232-3440delGA
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.832+46_832+47delGA
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.*195-3441_*195-3440delGA
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.1195+46_1195+47delGA
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.391+46_391+47delGA
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.832+46_832+47delGA
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.340-3441_340-3440delGA
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.*521+46_*521+47delGA
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.683-3441_683-3440delGA
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9583
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4875
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4559
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7139
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3714
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3028
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7316
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2909
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8972
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: AAG
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

16-67401405-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67401405
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67401405
    reference: chr 16
allele count: 1
allele frequency: 8.981498113885396e-6
allele num: 111340
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.832+45A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.215-7745A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.683-3442A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.340-3442A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.*521+45A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.832+45A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-232-3442A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.391+45A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.773-3442A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.*195-3442A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.1195+45A>T
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4876
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8971
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9581
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3724
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4559
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2901
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3029
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7316
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7141
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1909
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS

16-67401407-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67401407
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67401407
    reference: chr 16
allele count: 1
allele frequency: 9.03407653669642e-6
allele num: 110692
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.*195-3440A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.832+47A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.773-3440A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.*521+47A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.1195+47A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-232-3440A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.391+47A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.683-3440A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.215-7743A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.340-3440A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.832+47A>G
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1908
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4563
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4876
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7192
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3890
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2772
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7316
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9547
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3031
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8942
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS

16-67401408-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67401408
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67401408
    reference: chr 16
allele count: 1
allele frequency: 9.027063135279568e-6
allele num: 110778
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.215-7742T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.*195-3439T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.391+48T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.340-3439T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.773-3439T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.*521+48T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.1195+48T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.832+48T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.683-3439T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-232-3439T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.832+48T>C
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4875
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7202
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2768
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9540
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8945
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3033
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1907
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3898
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7315
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4558
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS

16-67401410-GAAGATAT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67401410
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67401403
    reference: chr 16
allele count: 1
allele frequency: 9.06355363811043e-6
allele num: 110332
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.*521+54_*521+60delATATAAG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.391+54_391+60delATATAAG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.1195+54_1195+60delATATAAG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.832+54_832+60delATATAAG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.832+54_832+60delATATAAG
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3983
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4493
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3032
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7269
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9541
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1908
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2693
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7312
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8943
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4878
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3795
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2406
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: GAAGATAT
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

16-67404801-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67404801
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67404801
    reference: chr 16
allele count: 2
allele frequency: 1.75561797752809e-5
allele num: 113920
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.*522-46A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.683-46A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.215-4349A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.773-46A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.392-46A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.340-46A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.833-46A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-232-46A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.1196-46A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.*195-46A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.833-46A>G
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12771
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9029
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30279
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1788
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/16-67404811-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67404811
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67404811
    reference: chr 16
allele count: 1
allele frequency: 8.753194916144393e-6
allele num: 114244
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-232-36A>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.1196-36A>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.340-36A>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.683-36A>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.773-36A>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.*195-36A>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.215-4339A>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.833-36A>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.392-36A>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.*522-36A>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.833-36A>C
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2968
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30350
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9282
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12778
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

16-67404814-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67404814
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67404814
    reference: chr 16
allele count: 1
allele frequency: 8.738661586591398e-6
allele num: 114434
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.1196-33G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.683-33G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.*522-33G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.833-33G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.833-33G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.340-33G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.215-4336G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.392-33G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-232-33G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.*195-33G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.773-33G>C
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12786
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2960
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9353
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30355
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

16-67404821-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67404821
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67404821
    reference: chr 16
allele count: 1
allele frequency: 8.704432296925594e-6
allele num: 114884
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.340-26C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.392-26C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.*195-26C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.773-26C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.833-26C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.833-26C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.1196-26C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-232-26C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.215-4329C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.683-26C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.*522-26C>G
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2913
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30406
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12798
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9757
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP

16-67404844-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67404844
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67404844
    reference: chr 16
allele count: 1
allele frequency: 8.446659346228567e-6
allele num: 118390
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.*195-3C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.215-4306C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.392-3C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.340-3C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.683-3C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.1196-3C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.773-3C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.833-3C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.833-3C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-232-3C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.*522-3C>T
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12869
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30854
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1196-3C>T
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: QD

16-67404860-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67404860
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67404860
    reference: chr 16
allele count: 1
allele frequency: 8.305509875251242e-6
allele num: 120402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.353A>T
  hgvsp: ENSP00000455018.1:p.Gln118Leu
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.405A>T
  hgvsp: ENST00000290940.7:c.405A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-219A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.1209A>T
  hgvsp: ENST00000329956.6:c.1209A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.846A>T
  hgvsp: ENST00000435835.3:c.846A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.696A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.846A>T
  hgvsp: ENST00000563189.1:c.846A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.215-4290A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.*208A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.786A>T
  hgvsp: ENSP00000464675.1:p.Gln263Leu
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.*535A>T
  variant of: http://identifiers.org/hgnc/25615
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12937
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12744
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31334
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln263Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum

16-67404862-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67404862
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67404862
    reference: chr 16
allele count: 1
allele frequency: 8.297791128001726e-6
allele num: 120514
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-217C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.848C>T
  hgvsp: ENSP00000455103.1:p.Thr283Ile
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.698C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.*537C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.788C>T
  hgvsp: ENSP00000464675.1:p.Pro264Ser
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.355C>T
  hgvsp: ENSP00000455018.1:p.Pro119Ser
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.215-4288C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.848C>T
  hgvsp: ENSP00000411122.3:p.Thr283Ile
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.1211C>T
  hgvsp: ENSP00000329943.6:p.Thr404Ile
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.*210C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.407C>T
  hgvsp: ENSP00000290940.4:p.Thr136Ile
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12747
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31387
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12968
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr404Ile
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

16-67404897-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67404897
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67404897
    reference: chr 16
allele count: 3
allele frequency: 2.472310126582278e-5
allele num: 121344
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.883G>A
  hgvsp: ENSP00000455103.1:p.Val295Ile
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.823G>A
  hgvsp: ENSP00000464675.1:p.Met275Ile
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.442G>A
  hgvsp: ENSP00000290940.4:p.Val148Ile
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.390G>A
  hgvsp: ENSP00000455018.1:p.Met130Ile
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.1246G>A
  hgvsp: ENSP00000329943.6:p.Val416Ile
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.733G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.*245G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.*572G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-182G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.215-4253G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.883G>A
  hgvsp: ENSP00000411122.3:p.Val295Ile
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13059
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31846
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12879
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val416Ile
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

16-67404901-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67404901
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67404901
    reference: chr 16
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.215-4249A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.*1A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.737A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-178A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.446A>T
  hgvsp: ENSP00000290940.4:p.Glu149Val
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.*1A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.887A>T
  hgvsp: ENSP00000455103.1:p.Glu296Val
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.1250A>T
  hgvsp: ENSP00000329943.6:p.Glu417Val
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.*576A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.887A>T
  hgvsp: ENSP00000411122.3:p.Glu296Val
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.*249A>T
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 12889
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13053
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31861
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Glu417Val
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

http://identifiers.org/exac.variant/16-67404935-A-AC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67404935
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67404936
    reference: chr 16
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: AC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.773dupC
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.923dupC
  hgvsp: ENSP00000455103.1:p.Ala309SerfsTer73
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.*285dupC
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.*612dupC
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-142dupC
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.923dupC
  hgvsp: ENSP00000411122.3:p.Ala309SerfsTer111
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.*37dupC
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.482dupC
  hgvsp: ENSP00000290940.4:p.Ala162SerfsTer73
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.1286dupC
  hgvsp: ENSP00000329943.6:p.Ala430SerfsTer73
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.215-4213dupC
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.*37dupC
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1781
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31895
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12876
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13057
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala430SerfsTer73
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

16-67404936-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67404936
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67404936
    reference: chr 16
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.*36C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.922C>T
  hgvsp: ENSP00000455103.1:p.Pro308Ser
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.215-4214C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.*284C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.481C>T
  hgvsp: ENSP00000290940.4:p.Pro161Ser
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.*36C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.772C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.922C>T
  hgvsp: ENSP00000411122.3:p.Pro308Ser
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.1285C>T
  hgvsp: ENSP00000329943.6:p.Pro429Ser
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-143C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.*611C>T
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13058
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12874
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31898
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro429Ser
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum

16-67404937-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67404937
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67404937
    reference: chr 16
allele count: 2
allele frequency: 1.647419317638919e-5
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.*285C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.215-4213C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.*37C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-142C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.923C>T
  hgvsp: ENSP00000411122.3:p.Pro308Leu
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.773C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.923C>T
  hgvsp: ENSP00000455103.1:p.Pro308Leu
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.*612C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.1286C>T
  hgvsp: ENSP00000329943.6:p.Pro429Leu
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.*37C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.482C>T
  hgvsp: ENSP00000290940.4:p.Pro161Leu
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12876
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31895
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13061
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro429Leu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

16-67404942-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67404942
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67404942
    reference: chr 16
allele count: 20
allele frequency: 1.647365039619129e-4
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.778C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-137C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.*617C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.*42C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.928C>T
  hgvsp: ENSP00000455103.1:p.His310Tyr
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.487C>T
  hgvsp: ENSP00000290940.4:p.His163Tyr
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.*290C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.1291C>T
  hgvsp: ENSP00000329943.6:p.His431Tyr
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.215-4208C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.*42C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.928C>T
  hgvsp: ENSP00000411122.3:p.His310Tyr
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31897
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13060
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12873
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His431Tyr
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum

16-67404943-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67404943
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67404943
    reference: chr 16
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.*43A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.*43A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.215-4207A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.929A>G
  hgvsp: ENSP00000411122.3:p.His310Arg
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.929A>G
  hgvsp: ENSP00000455103.1:p.His310Arg
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.488A>G
  hgvsp: ENSP00000290940.4:p.His163Arg
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-136A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.1292A>G
  hgvsp: ENSP00000329943.6:p.His431Arg
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.*618A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.779A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.*291A>G
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31911
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13064
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12875
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1781
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.His431Arg
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: FS

16-67404950-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67404950
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67404950
    reference: chr 16
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-129T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.*50T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.786T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.1299T>C
  hgvsp: ENST00000329956.6:c.1299T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.936T>C
  hgvsp: ENST00000435835.3:c.936T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.215-4200T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.936T>C
  hgvsp: ENST00000563189.1:c.936T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.495T>C
  hgvsp: ENST00000290940.7:c.495T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.*50T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.*625T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.*298T>C
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13064
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31917
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12872
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser433Ser
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum

16-67404962-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67404962
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67404962
    reference: chr 16
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.*637C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.798C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.*62C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.507C>T
  hgvsp: ENST00000290940.7:c.507C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.*62C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.948C>T
  hgvsp: ENST00000563189.1:c.948C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-117C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.215-4188C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.948C>T
  hgvsp: ENST00000435835.3:c.948C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.1311C>T
  hgvsp: ENST00000329956.6:c.1311C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.*310C>T
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12878
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13059
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31917
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn437Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD

16-67404963-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67404963
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67404963
    reference: chr 16
allele count: 2
allele frequency: 1.647392178181938e-5
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.949G>A
  hgvsp: ENSP00000455103.1:p.Ala317Thr
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.*63G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.799G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.215-4187G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.*63G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.*638G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.508G>A
  hgvsp: ENSP00000290940.4:p.Ala170Thr
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.949G>A
  hgvsp: ENSP00000411122.3:p.Ala317Thr
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.*311G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.1312G>A
  hgvsp: ENSP00000329943.6:p.Ala438Thr
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-116G>A
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13056
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31920
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12883
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala438Thr
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

16-67404965-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67404965
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67404965
    reference: chr 16
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.*65T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-114T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.*313T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.510T>C
  hgvsp: ENST00000290940.7:c.510T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.215-4185T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.*65T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.801T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.1314T>C
  hgvsp: ENST00000329956.6:c.1314T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.951T>C
  hgvsp: ENST00000563189.1:c.951T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.951T>C
  hgvsp: ENST00000435835.3:c.951T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.*640T>C
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31925
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13054
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12881
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala438Ala
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: East Asian
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

16-67404969-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67404969
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67404969
    reference: chr 16
allele count: 3
allele frequency: 2.471128976458378e-5
allele num: 121402
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-110C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.*317C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.*69C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.955C>G
  hgvsp: ENSP00000455103.1:p.Leu319Val
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.514C>G
  hgvsp: ENSP00000290940.4:p.Leu172Val
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.*69C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.1318C>G
  hgvsp: ENSP00000329943.6:p.Leu440Val
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.805C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.*644C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.955C>G
  hgvsp: ENSP00000411122.3:p.Leu319Val
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.215-4181C>G
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13050
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31926
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12882
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu440Val
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

16-67404975-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67404975
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67404975
    reference: chr 16
allele count: 2
allele frequency: 1.647392178181938e-5
allele num: 121404
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.*75A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.811A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.520A>G
  hgvsp: ENSP00000290940.4:p.Asn174Asp
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.961A>G
  hgvsp: ENSP00000455103.1:p.Asn321Asp
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.961A>G
  hgvsp: ENSP00000411122.3:p.Asn321Asp
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.*75A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.1324A>G
  hgvsp: ENSP00000329943.6:p.Asn442Asp
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.*650A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.*323A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-104A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.215-4175A>G
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12889
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1770
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13052
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn442Asp
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum

16-67404984-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67404984
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67404984
    reference: chr 16
allele count: 2
allele frequency: 1.647419317638919e-5
allele num: 121402
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.215-4166A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.820A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.*332A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-95A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.1333A>G
  hgvsp: ENSP00000329943.6:p.Thr445Ala
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.*84A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.*84A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.529A>G
  hgvsp: ENSP00000290940.4:p.Thr177Ala
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.970A>G
  hgvsp: ENSP00000455103.1:p.Thr324Ala
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.970A>G
  hgvsp: ENSP00000411122.3:p.Thr324Ala
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.*659A>G
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31939
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12888
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13047
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr445Ala
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

16-67404985-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67404985
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67404985
    reference: chr 16
allele count: 5
allele frequency: 4.118412599047823e-5
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.1334C>T
  hgvsp: ENSP00000329943.6:p.Thr445Ile
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.*85C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.971C>T
  hgvsp: ENSP00000455103.1:p.Thr324Ile
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-94C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.*85C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.215-4165C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.530C>T
  hgvsp: ENSP00000290940.4:p.Thr177Ile
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.971C>T
  hgvsp: ENSP00000411122.3:p.Thr324Ile
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.*333C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.821C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.*660C>T
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12886
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31942
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
hgvs: p.Thr445Ile
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

16-67404989-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67404989
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67404989
    reference: chr 16
allele count: 2
allele frequency: 1.647392178181938e-5
allele num: 121404
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.*89T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.975T>C
  hgvsp: ENST00000435835.3:c.975T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.*89T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.*664T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.*337T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-90T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.1338T>C
  hgvsp: ENST00000329956.6:c.1338T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.215-4161T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.975T>C
  hgvsp: ENST00000563189.1:c.975T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.825T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.534T>C
  hgvsp: ENST00000290940.7:c.534T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12890
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31940
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13048
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro446Pro
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum

16-67404993-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67404993
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67404993
    reference: chr 16
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.*93C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.*341C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.979C>T
  hgvsp: ENSP00000411122.3:p.Arg327Trp
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.829C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.538C>T
  hgvsp: ENSP00000290940.4:p.Arg180Trp
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.1342C>T
  hgvsp: ENSP00000329943.6:p.Arg448Trp
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.215-4157C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.*93C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.979C>T
  hgvsp: ENSP00000455103.1:p.Arg327Trp
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-86C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.*668C>T
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13050
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31944
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12885
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg448Trp
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff

16-67404994-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67404994
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67404994
    reference: chr 16
allele count: 6
allele frequency: 4.942176534545814e-5
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.*94G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.*94G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.539G>A
  hgvsp: ENSP00000290940.4:p.Arg180Gln
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.980G>A
  hgvsp: ENSP00000455103.1:p.Arg327Gln
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.980G>A
  hgvsp: ENSP00000411122.3:p.Arg327Gln
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-85G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.830G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.*342G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.1343G>A
  hgvsp: ENSP00000329943.6:p.Arg448Gln
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.*669G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.215-4156G>A
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31944
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12885
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13047
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Arg448Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
reference allele: G
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

16-67405015-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67405015
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67405015
    reference: chr 16
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.1001G>A
  hgvsp: ENSP00000411122.3:p.Gly334Glu
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.*115G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.*115G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-64G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.*363G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.1364G>A
  hgvsp: ENSP00000329943.6:p.Gly455Glu
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.560G>A
  hgvsp: ENSP00000290940.4:p.Gly187Glu
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.1001G>A
  hgvsp: ENSP00000455103.1:p.Gly334Glu
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.*690G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.851G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.215-4135G>A
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12881
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31966
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly455Glu
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

16-67405021-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67405021
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67405021
    reference: chr 16
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.1370C>T
  hgvsp: ENSP00000329943.6:p.Ser457Leu
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.*696C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.857C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.1007C>T
  hgvsp: ENSP00000455103.1:p.Ser336Leu
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.1007C>T
  hgvsp: ENSP00000411122.3:p.Ser336Leu
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-58C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.*369C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.*121C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.566C>T
  hgvsp: ENSP00000290940.4:p.Ser189Leu
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.*121C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.215-4129C>T
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13040
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12886
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser457Leu
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

16-67405032-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67405032
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67405032
    reference: chr 16
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.*707A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.1018A>G
  hgvsp: ENSP00000455103.1:p.Lys340Glu
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-47A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.868A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.577A>G
  hgvsp: ENSP00000290940.4:p.Lys193Glu
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.215-4118A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.1381A>G
  hgvsp: ENSP00000329943.6:p.Lys461Glu
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.1018A>G
  hgvsp: ENSP00000411122.3:p.Lys340Glu
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.*380A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.*132A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.*132A>G
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31968
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13038
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12892
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys461Glu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

16-67405033-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67405033
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67405033
    reference: chr 16
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.1382A>G
  hgvsp: ENSP00000329943.6:p.Lys461Arg
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.*133A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.*708A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.1019A>G
  hgvsp: ENSP00000455103.1:p.Lys340Arg
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.215-4117A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.578A>G
  hgvsp: ENSP00000290940.4:p.Lys193Arg
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-46A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.1019A>G
  hgvsp: ENSP00000411122.3:p.Lys340Arg
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.869A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.*381A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.*133A>G
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31970
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12893
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13036
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys461Arg
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

16-67405043-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67405043
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67405043
    reference: chr 16
allele count: 21
allele frequency: 1.729790283520865e-4
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.1029C>T
  hgvsp: ENST00000563189.1:c.1029C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.1029C>T
  hgvsp: ENST00000435835.3:c.1029C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.215-4107C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-36C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.879C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.588C>T
  hgvsp: ENST00000290940.7:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.*391C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.*718C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.*143C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.1392C>T
  hgvsp: ENST00000329956.6:c.1392C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.*143C>T
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12882
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 31968
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13037
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr464Thr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: African
reference allele: C
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

16-67405048-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67405048
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67405048
    reference: chr 16
allele count: 5
allele frequency: 4.118548294097296e-5
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.*396G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.1397G>A
  hgvsp: ENSP00000329943.6:p.Arg466Lys
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-31G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.593G>A
  hgvsp: ENSP00000290940.4:p.Arg198Lys
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.*148G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.215-4102G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.*723G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.1034G>A
  hgvsp: ENSP00000455103.1:p.Arg345Lys
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.884G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.*148G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.1034G>A
  hgvsp: ENSP00000411122.3:p.Arg345Lys
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31981
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13040
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg466Lys
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: African
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/16-67405056-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67405056
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67405056
    reference: chr 16
allele count: 3
allele frequency: 2.471169686985173e-5
allele num: 121400
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.1405A>C
  hgvsp: ENSP00000329943.6:p.Ser469Arg
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.1042A>C
  hgvsp: ENSP00000411122.3:p.Ser348Arg
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.601A>C
  hgvsp: ENSP00000290940.4:p.Ser201Arg
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.215-4094A>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.*731A>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.*404A>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.*156A>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.1042A>C
  hgvsp: ENSP00000455103.1:p.Ser348Arg
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-23A>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.*156A>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.892A>C
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13041
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31985
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12884
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser469Arg
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQ

16-67405063-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67405063
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67405063
    reference: chr 16
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.608C>T
  hgvsp: ENSP00000290940.4:p.Ser203Leu
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.899C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.215-4087C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.*411C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.1412C>T
  hgvsp: ENSP00000329943.6:p.Ser471Leu
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.1049C>T
  hgvsp: ENSP00000455103.1:p.Ser350Leu
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-16C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.*163C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.*163C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.1049C>T
  hgvsp: ENSP00000411122.3:p.Ser350Leu
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.*738C>T
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13037
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12886
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31989
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser471Leu
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

16-67405064-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67405064
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67405064
    reference: chr 16
allele count: 2
allele frequency: 1.647419317638919e-5
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.1413G>A
  hgvsp: ENST00000329956.6:c.1413G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.609G>A
  hgvsp: ENST00000290940.7:c.609G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-15G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.1050G>A
  hgvsp: ENST00000563189.1:c.1050G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.*739G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.*164G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.*164G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.900G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.*412G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.1050G>A
  hgvsp: ENST00000435835.3:c.1050G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.215-4086G>A
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12891
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13038
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31985
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser471Ser
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

16-67405072-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67405072
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67405072
    reference: chr 16
allele count: 3
allele frequency: 2.47133254250692e-5
allele num: 121392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.215-4078G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.*172G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.*172G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.1058G>A
  hgvsp: ENSP00000455103.1:p.Gly353Glu
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.1058G>A
  hgvsp: ENSP00000411122.3:p.Gly353Glu
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.*420G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.1421G>A
  hgvsp: ENSP00000329943.6:p.Gly474Glu
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.617G>A
  hgvsp: ENSP00000290940.4:p.Gly206Glu
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.908G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.*747G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-7G>A
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13033
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12896
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31985
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
hgvs: p.Gly474Glu
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/16-67405087-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67405087
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67405086
    reference: chr 16
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.*188delC
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.633delC
  hgvsp: ENSP00000290940.4:p.Asp211GlufsTer7
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.*763delC
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.10delC
  hgvsp: ENSP00000445861.1:p.Gln4AsnfsTer20
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.1074delC
  hgvsp: ENSP00000455103.1:p.Asp358GlufsTer7
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.1437delC
  hgvsp: ENSP00000329943.6:p.Asp479GlufsTer7
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.*188delC
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.1074delC
  hgvsp: ENSP00000411122.3:p.Asp358GlufsTer7
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.215-4062delC
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.924delC
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.*436delC
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12893
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13031
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31986
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Asp479GlufsTer7
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: AC
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

16-67405090-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67405090
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67405090
    reference: chr 16
allele count: 1
allele frequency: 8.239268352970255e-6
allele num: 121370
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.1439A>G
  hgvsp: ENSP00000329943.6:p.Asn480Ser
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.1076A>G
  hgvsp: ENSP00000455103.1:p.Asn359Ser
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.635A>G
  hgvsp: ENSP00000290940.4:p.Asn212Ser
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.12A>G
  hgvsp: ENST00000541146.1:c.12A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.*765A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.1076A>G
  hgvsp: ENSP00000411122.3:p.Asn359Ser
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.*190A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.*438A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.215-4060A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.*190A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.926A>G
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31986
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12893
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Asn480Ser
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

16-67405118-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67405118
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67405117
    reference: chr 16
allele count: 1
allele frequency: 8.242392271933006e-6
allele num: 121324
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.1106delG
  hgvsp: ENSP00000455103.1:p.Gly369ValfsTer75
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.*468delG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.*795delG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.*220delG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.215-4030delG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.*220delG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.665delG
  hgvsp: ENSP00000290940.4:p.Gly222ValfsTer217
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.1106delG
  hgvsp: ENSP00000411122.3:p.Gly369ValfsTer12
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: frameshift
filter: PASS
hgvs: p.Gly490ValfsTer75
num of homozygotes: 0
reference allele: TG

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1614
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.314279102059708e-4
allele num: 8642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 302
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3344
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15632
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 8.595000000000001e0

DP
type: SiteQuality
SIO_000300: 9.73834e5

VQSLOD
type: SiteQuality
SIO_000300: -5.614e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.368e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.27e-1

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3270
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 304
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.164958061509786e-4
allele num: 8584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15204
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1402
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.238e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.79e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.838e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.97e-2

DP
type: SiteQuality
SIO_000300: 9.63877e5

MQRankSum
type: SiteQuality
SIO_000300: -5.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.67e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 122
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3278
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15192
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 302
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1392
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

FS
type: SiteQuality
SIO_000300: 1.0909e1

QD
type: SiteQuality
SIO_000300: 2.86e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.5e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.017e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.46e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.496e-1

MQ
type: SiteQuality
SIO_000300: 5.039e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.23e-2

DP
type: SiteQuality
SIO_000300: 9.63981e5

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 6.101281269066504e-4
allele num: 3278
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 3.949447077409163e-4
allele num: 15192
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 302
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1392
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.86e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

FS
type: SiteQuality
SIO_000300: 1.0909e1

MQ
type: SiteQuality
SIO_000300: 5.039e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.46e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.017e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.23e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.496e-1

DP
type: SiteQuality
SIO_000300: 9.63981e5

GenotypeQuality
all individuals: 200
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3162
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 714
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1222
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14448
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1350
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 286
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.73e-1

QD
type: SiteQuality
SIO_000300: 1.229e1

MQRankSum
type: SiteQuality
SIO_000300: -5.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e0

VQSLOD
type: SiteQuality
SIO_000300: -1.258e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 9.45166e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.422e0

GenotypeQuality
all individuals: 200
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1146
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3116
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1270
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 280
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14132
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 684
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.306e1

DP
type: SiteQuality
SIO_000300: 9.39761e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.46e-2

MQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.745000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

GenotypeQuality
all individuals: 245
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 258
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2792
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 708
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 432
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8240
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12214
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 946
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.26e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.2e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.001e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.2e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.953e0

DP
type: SiteQuality
SIO_000300: 8.9753e5

GenotypeQuality
all individuals: 223
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 694
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 258
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8234
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2782
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12168
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 940
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.95e-1

DP
type: SiteQuality
SIO_000300: 8.96995e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.28e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 8.51e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

GenotypeQuality
all individuals: 213
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8206
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 358
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2764
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 918
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 8.35282325425994e-5
allele num: 11972
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 668
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.215e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.42e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.15e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.447e0

FS
type: SiteQuality
SIO_000300: 6.608e0

MQRankSum
type: SiteQuality
SIO_000300: -1.78e-1

QD
type: SiteQuality
SIO_000300: 7.9e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

DP
type: SiteQuality
SIO_000300: 8.95451e5

GenotypeQuality
all individuals: 208
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 910
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 354
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 7.329587099926704e-4
allele num: 8186
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2738
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 1.178451178451178e-3
allele num: 11880
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 254
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.92e0

DP
type: SiteQuality
SIO_000300: 8.95492e5

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.351e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.95e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.48e-2

GenotypeQuality
all individuals: 105
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 3.687315634218289e-4
allele num: 2712
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 636
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11722
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 250
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 330
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8182
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.132e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.84e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.949e-1

DP
type: SiteQuality
SIO_000300: 8.95489e5

MQRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

FS
type: SiteQuality
SIO_000300: 9.42e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.67e-2

GenotypeDepth
all individuals: 7335
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2312
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3689
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variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4180
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3800
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3819
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10296
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506160195198361e-5
allele num: 66394
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.109e0

MQ
type: SiteQuality
SIO_000300: 5.992e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.457e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.28e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e0

VQSLOD
type: SiteQuality
SIO_000300: -1.104e0

DP
type: SiteQuality
SIO_000300: 2.271063e6

QD
type: SiteQuality
SIO_000300: 1.468e1

GenotypeDepth
all individuals: 1903
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3816
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4170
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 537
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12821
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2271
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2312
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66328
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.733307377846993e-5
allele num: 10274
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.988e1

MQRankSum
type: SiteQuality
SIO_000300: 7.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.276e0

QD
type: SiteQuality
SIO_000300: 1.387e1

DP
type: SiteQuality
SIO_000300: 2.269721e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.99e0

FS
type: SiteQuality
SIO_000300: 1.191e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.604e0

VQSLOD
type: SiteQuality
SIO_000300: 6.64e-1

GenotypeDepth
all individuals: 319
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3799
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2271
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2312
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 33
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variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26958
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 537
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3816
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12821
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4170
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3685
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507658907248824e-5
allele num: 66328
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10274
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.32e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.64e-1

FS
type: SiteQuality
SIO_000300: 1.191e0

DP
type: SiteQuality
SIO_000300: 2.269721e6

MQ
type: SiteQuality
SIO_000300: 5.988e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.604e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.99e0

QD
type: SiteQuality
SIO_000300: 1.387e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.276e0

GenotypeDepth
all individuals: 477
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 26958
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 50
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variant carriers: 0

GenotypeQuality
all individuals: 3815
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variant carriers: 0

GenotypeQuality
all individuals: 61
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variant carriers: 0

GenotypeQuality
all individuals: 576
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 12752
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 84
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variant carriers: 0

GenotypeQuality
all individuals: 4168
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variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3688
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2312
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3799
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2271
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508022680661117e-5
allele num: 66312
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10270
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.34e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.417e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.93e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.12e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.04e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.06e-1

DP
type: SiteQuality
SIO_000300: 2.269092e6

GenotypeDepth
all individuals: 556
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 3812
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
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variant carriers: 0

GenotypeQuality
all individuals: 167
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variant carriers: 0

GenotypeQuality
all individuals: 1449
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GenotypeQuality
all individuals: 4026
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variant carriers: 0

GenotypeQuality
all individuals: 2309
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variant carriers: 0

GenotypeQuality
all individuals: 21
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GenotypeQuality
all individuals: 53
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GenotypeQuality
all individuals: 48
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 26960
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
all individuals: 132
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GenotypeQuality
all individuals: 140
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variant carriers: 0

GenotypeQuality
all individuals: 11549
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variant carriers: 0

GenotypeQuality
all individuals: 114
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variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 2243
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3673
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15914
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51666818333485e-5
allele num: 65934
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10166
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.614e1

MQ
type: SiteQuality
SIO_000300: 5.966e1

MQRankSum
type: SiteQuality
SIO_000300: -1.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.86e0

FS
type: SiteQuality
SIO_000300: 5.183e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.01e-2

DP
type: SiteQuality
SIO_000300: 2.254671e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.77e0

VQSLOD
type: SiteQuality
SIO_000300: 2.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.138e0

GenotypeDepth
all individuals: 260
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variant carriers: 0

GenotypeQuality
all individuals: 104
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 11659
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3675
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GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516990291262136e-5
allele num: 65920
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10166
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15912
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.79e-1

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.26e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.922e1

GenotypeQuality
all individuals: 1775
bin: 3.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 4
allele frequency: 2.450379808870375e-4
allele num: 16324
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8576
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

DP
type: SiteQuality
SIO_000300: 2.030848e6

MQRankSum
type: SiteQuality
SIO_000300: 1.85e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.12e0

FS
type: SiteQuality
SIO_000300: 1.879e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.862e0

MQ
type: SiteQuality
SIO_000300: 5.978e1

QD
type: SiteQuality
SIO_000300: 1.374e1

GenotypeQuality
all individuals: 363
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9762
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16332
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506114826194349e-5
allele num: 66396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.7e-2

ClippingRankSum
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SIO_000300: 6.67e-1

MQRankSum
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SIO_000300: -5.639999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
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SIO_000300: 2.04603e6

ReadPosRankSum
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SIO_000300: -1.128e0

BaseQRankSum
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SIO_000300: 1.69e0

QD
type: SiteQuality
SIO_000300: 1.321e1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.721437292865864e-5
allele num: 11466
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16340
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66378
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9762
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.166316771635176e-4
allele num: 8574
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.78e-1

VQSLOD
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SIO_000300: 5.51e-1

BaseQRankSum
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FS
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SIO_000300: 3.37e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.27e-1

DP
type: SiteQuality
SIO_000300: 2.062668e6

QD
type: SiteQuality
SIO_000300: 1.033e1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

South Asian
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allele frequency: 1.223990208078335e-4
allele num: 16340
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9762
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66380
num of homozygotes: 0

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 6.037e0

MQ
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SIO_000300: 5.982e1

MQRankSum
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ReadPosRankSum
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SIO_000300: 3.18e-1

InbreedingCoeff
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SIO_000300: 5.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.59e0

VQSLOD
type: SiteQuality
SIO_000300: 3.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.43e-1

DP
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SIO_000300: 2.067493e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65852
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.852216748768474e-5
allele num: 10150
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15826
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.74e-1

VQSLOD
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BaseQRankSum
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MQRankSum
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SIO_000300: -6.2e-2

FS
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SIO_000300: 6.141e0

DP
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SIO_000300: 2.251377e6

QD
type: SiteQuality
SIO_000300: 1.425e1

MQ
type: SiteQuality
SIO_000300: 5.969e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518556763651825e-5
allele num: 65852
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15826
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10150
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.251377e6

VQSLOD
type: SiteQuality
SIO_000300: 8.26e-1

QD
type: SiteQuality
SIO_000300: 1.425e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.74e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.2e-2

FS
type: SiteQuality
SIO_000300: 6.141e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.616e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.45e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.372673973999491e-5
allele num: 15692
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65774
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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MQRankSum
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SIO_000300: -6.3e-2

ClippingRankSum
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FS
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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MQ
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DP
type: SiteQuality
SIO_000300: 2.24838e6

QD
type: SiteQuality
SIO_000300: 2.893e1

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.162250116225012e-4
allele num: 8604
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65548
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African
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allele count: 0
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South Asian
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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MQ
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QD
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InbreedingCoeff
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DP
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MQRankSum
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ReadPosRankSum
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FS
type: SiteQuality
SIO_000300: 9.04e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 1
allele frequency: 9.9147332936744e-5
allele num: 10086
num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 15198
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele count: 6
allele frequency: 5.220114842526536e-4
allele num: 11494
num of homozygotes: 0

European (Non-Finnish)
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allele count: 30
allele frequency: 4.578475062572492e-4
allele num: 65524
num of homozygotes: 0

East Asian
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ReadPosRankSum
type: SiteQuality
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FS
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InbreedingCoeff
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MQ
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VQSLOD
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ClippingRankSum
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MQRankSum
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DP
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65094
num of homozygotes: 0

East Asian
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allele num: 8590
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African
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
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Other
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South Asian
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BaseQRankSum
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SIO_000300: 5.83e0

DP
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FS
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MQRankSum
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QD
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InbreedingCoeff
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VQSLOD
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SIO_000300: -2.91e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.01e0

MQ
type: SiteQuality
SIO_000300: 5.991e1

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2146
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3796
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.579878665318504e-5
allele num: 63296
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11444
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9190
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8482
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

DP
type: SiteQuality
SIO_000300: 2.147295e6

MQ
type: SiteQuality
SIO_000300: 6.13e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.949e0

MQRankSum
type: SiteQuality
SIO_000300: 1.52e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.17e-1

QD
type: SiteQuality
SIO_000300: 1.329e1

VQSLOD
type: SiteQuality
SIO_000300: 7.03e-1

GenotypeQuality
all individuals: 3390
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 26970
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variant carriers: 1

GenotypeQuality
all individuals: 2307
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.738203425375742e-5
allele num: 11444
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11410
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9200
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63366
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.146996e6

MQRankSum
type: SiteQuality
SIO_000300: 4.46e-1

MQ
type: SiteQuality
SIO_000300: 5.933e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -6.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.743e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.76e-1

QD
type: SiteQuality
SIO_000300: 1.773e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 3795
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 480
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 26945
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2307
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 947
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63058
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9094
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.885729518393461e-5
allele num: 11254
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8478
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.37e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.97e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.43e-1

QD
type: SiteQuality
SIO_000300: 1.606e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

DP
type: SiteQuality
SIO_000300: 2.145292e6

MQ
type: SiteQuality
SIO_000300: 5.978e1

VQSLOD
type: SiteQuality
SIO_000300: 9.5e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 3792
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3800
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GenotypeQuality
all individuals: 653
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9098
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.584334104375931e-5
allele num: 63118
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11264
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.85e-1

DP
type: SiteQuality
SIO_000300: 2.145168e6

VQSLOD
type: SiteQuality
SIO_000300: -7.009e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.22e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.85e-1

QD
type: SiteQuality
SIO_000300: 1.938e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 531
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9060
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62950
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.785802143735723e-5
allele num: 11382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11068
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8456
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.05e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.932e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.77e-1

DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.392e1

VQSLOD
type: SiteQuality
SIO_000300: 7.16e-1

QD
type: SiteQuality
SIO_000300: 6.83e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.102e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10290
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11272
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.086038760646834e-5
allele num: 64808
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e0

MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
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SIO_000300: 1.93e0

VQSLOD
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DP
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QD
type: SiteQuality
SIO_000300: 1.312e1

BaseQRankSum
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SIO_000300: 3.31e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 91
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64910
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.714396735962697e-5
allele num: 10294
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.63e0

MQRankSum
type: SiteQuality
SIO_000300: -8.19e-1

DP
type: SiteQuality
SIO_000300: 1.614937e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.4e-3

MQ
type: SiteQuality
SIO_000300: 5.981e1

ReadPosRankSum
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.72e0

VQSLOD
type: SiteQuality
SIO_000300: 5.31e-1

QD
type: SiteQuality
SIO_000300: 1.406e1

ClippingRankSum
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SIO_000300: -1.267e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64950
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10298
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
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ClippingRankSum
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MQ
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MQRankSum
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VQSLOD
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QD
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InbreedingCoeff
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SIO_000300: 4.8e-3

ReadPosRankSum
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SIO_000300: 4.89e-1

BaseQRankSum
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SIO_000300: -2.074e0

DP
type: SiteQuality
SIO_000300: 1.616455e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.537089981247502e-5
allele num: 65058
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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VQSLOD
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SIO_000300: -1.118e0

InbreedingCoeff
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MQ
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SIO_000300: 5.938e1

ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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SIO_000300: 1.01e0

MQRankSum
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SIO_000300: -4.02e-1

FS
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SIO_000300: 9.917999999999999e0

QD
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SIO_000300: 1.419e1

DP
type: SiteQuality
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65912
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14416
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.146788990825688e-3
allele num: 872
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.99e-1

VQSLOD
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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SIO_000300: -1.0e-4

MQ
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SIO_000300: 5.973e1

DP
type: SiteQuality
SIO_000300: 1.660468e6

MQRankSum
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SIO_000300: -1.063e0

QD
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SIO_000300: 1.093e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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SIO_000300: 1.44e-1

MQ
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SIO_000300: 6.0e1

VQSLOD
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SIO_000300: -1.703e0

MQRankSum
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QD
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InbreedingCoeff
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SIO_000300: 1.87e-2

ReadPosRankSum
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SIO_000300: 1.31e0

FS
type: SiteQuality
SIO_000300: 1.0271e1

DP
type: SiteQuality
SIO_000300: 1.681427e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.784e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1595
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.505253334136135e-5
allele num: 66434
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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VQSLOD
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FS
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BaseQRankSum
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QD
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MQRankSum
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MQ
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DP
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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GenotypeDepth
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 3
allele frequency: 2.882952142994427e-4
allele num: 10406
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66692
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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FS
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MQ
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ClippingRankSum
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ReadPosRankSum
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DP
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VQSLOD
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 9.609840476648087e-5
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num of homozygotes: 0

Latino
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Other
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European (Non-Finnish)
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ReadPosRankSum
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MQRankSum
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FS
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QD
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BaseQRankSum
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DP
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ClippingRankSum
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InbreedingCoeff
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MQ
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VQSLOD
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
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allele num: 66728
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European (Finnish)
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African
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BaseQRankSum
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ReadPosRankSum
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FS
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InbreedingCoeff
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MQ
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ClippingRankSum
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MQRankSum
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QD
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VQSLOD
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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South Asian
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European (Non-Finnish)
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European (Finnish)
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African
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Other
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East Asian
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FS
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MQRankSum
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MQ
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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DP
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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African
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South Asian
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Latino
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Other
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East Asian
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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FS
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MQRankSum
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DP
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BaseQRankSum
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ReadPosRankSum
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MQ
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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Latino
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European (Non-Finnish)
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South Asian
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Other
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East Asian
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ClippingRankSum
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InbreedingCoeff
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FS
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BaseQRankSum
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MQ
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MQRankSum
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VQSLOD
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QD
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DP
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

African
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European (Non-Finnish)
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Latino
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Other
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South Asian
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East Asian
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ReadPosRankSum
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VQSLOD
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MQ
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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QD
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DP
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BaseQRankSum
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FS
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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South Asian
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Other
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Latino
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European (Finnish)
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European (Non-Finnish)
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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MQRankSum
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FS
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ClippingRankSum
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DP
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MQ
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QD
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BaseQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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Latino
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European (Finnish)
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Other
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East Asian
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South Asian
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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MQRankSum
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MQ
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InbreedingCoeff
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FS
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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East Asian
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European (Finnish)
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European (Non-Finnish)
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Latino
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MQRankSum
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DP
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VQSLOD
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InbreedingCoeff
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MQ
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QD
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SIO_000300: 1.435e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.14e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.112e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
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SIO_000300: 1.23e0

DP
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SIO_000300: 1.693811e6

FS
type: SiteQuality
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MQRankSum
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BaseQRankSum
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SIO_000300: -4.784e0

QD
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SIO_000300: 1.101e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.800000000000001e-3

VQSLOD
type: SiteQuality
SIO_000300: 8.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.295e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

South Asian
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allele frequency: 1.816860465116279e-4
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.200000000000001e-3

FS
type: SiteQuality
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VQSLOD
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DP
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SIO_000300: 1.693958e6

ClippingRankSum
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SIO_000300: -7.58e-1

MQRankSum
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QD
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BaseQRankSum
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SIO_000300: -2.789e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.1e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.996973057212216e-5
allele num: 66734
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.32e0

BaseQRankSum
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SIO_000300: 6.19e0

FS
type: SiteQuality
SIO_000300: 3.764e0

MQ
type: SiteQuality
SIO_000300: 5.979e1

QD
type: SiteQuality
SIO_000300: 1.621e1

ReadPosRankSum
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VQSLOD
type: SiteQuality
SIO_000300: 6.879999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.03e-2

DP
type: SiteQuality
SIO_000300: 1.693614e6

MQRankSum
type: SiteQuality
SIO_000300: 2.69e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

African
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allele num: 10406
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MQRankSum
type: SiteQuality
SIO_000300: -1.82e-1

FS
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InbreedingCoeff
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ClippingRankSum
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QD
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MQ
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BaseQRankSum
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DP
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VQSLOD
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

South Asian
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allele frequency: 3.028100775193798e-4
allele num: 16512
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

East Asian
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MQRankSum
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VQSLOD
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InbreedingCoeff
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MQ
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FS
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DP
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ReadPosRankSum
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QD
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BaseQRankSum
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele num: 6614
num of homozygotes: 0

Latino
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num of homozygotes: 0

East Asian
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South Asian
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allele num: 16512
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Other
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VQSLOD
type: SiteQuality
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BaseQRankSum
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MQ
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DP
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ClippingRankSum
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QD
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ReadPosRankSum
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InbreedingCoeff
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FS
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MQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

South Asian
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Other
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European (Finnish)
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ClippingRankSum
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DP
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VQSLOD
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FS
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MQ
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BaseQRankSum
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ReadPosRankSum
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QD
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MQRankSum
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InbreedingCoeff
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GenotypeDepth
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 6

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48049
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.993766482857828e-5
allele num: 66736
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.391e1

DP
type: SiteQuality
SIO_000300: 1.693347e6

InbreedingCoeff
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SIO_000300: 1.0e-3

MQ
type: SiteQuality
SIO_000300: 5.981e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.69e-1

FS
type: SiteQuality
SIO_000300: 5.35e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.62e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.41e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.49e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.37e-1

GenotypeDepth
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bin: 3.25e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 1336
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.692862e6

QD
type: SiteQuality
SIO_000300: 1.007e1

FS
type: SiteQuality
SIO_000300: 3.127e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: -1.57e-1

MQRankSum
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SIO_000300: 5.77e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.32e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 9
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GenotypeQuality
all individuals: 6
bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 683
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.91e-1

MQ
type: SiteQuality
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MQRankSum
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InbreedingCoeff
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FS
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SIO_000300: 4.252e0

QD
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SIO_000300: 1.415e1

DP
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SIO_000300: 1.692884e6

ReadPosRankSum
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SIO_000300: 8.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.391e0

GenotypeDepth
all individuals: 43
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 48096
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 9
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1590
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8177
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.03e-1

FS
type: SiteQuality
SIO_000300: 1.8e0

MQRankSum
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SIO_000300: -5.44e-1

DP
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SIO_000300: 1.69281e6

BaseQRankSum
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SIO_000300: 4.3e0

MQ
type: SiteQuality
SIO_000300: 5.978e1

InbreedingCoeff
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SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.25e-1

QD
type: SiteQuality
SIO_000300: 1.699e1

VQSLOD
type: SiteQuality
SIO_000300: 1.13e-1

GenotypeDepth
all individuals: 133
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 1335
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48103
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1590
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 681
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.1e0

MQRankSum
type: SiteQuality
SIO_000300: 5.620000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.692764e6

FS
type: SiteQuality
SIO_000300: 8.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
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SIO_000300: 1.17e0

MQ
type: SiteQuality
SIO_000300: 5.988e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.92e-1

QD
type: SiteQuality
SIO_000300: 1.613e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 21

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

South Asian
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allele count: 20
allele frequency: 1.211240310077519e-3
allele num: 16512
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.69382e6

QD
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.983e1

VQSLOD
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FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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SIO_000300: -2.304e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.028100775193798e-4
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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VQSLOD
type: SiteQuality
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MQRankSum
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ReadPosRankSum
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QD
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BaseQRankSum
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MQ
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FS
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InbreedingCoeff
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SIO_000300: -1.0e-4

ClippingRankSum
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DP
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GenotypeDepth
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.495729057395475e-5
allele num: 66730
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.12e0

ReadPosRankSum
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InbreedingCoeff
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SIO_000300: -2.0e-4

MQRankSum
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FS
type: SiteQuality
SIO_000300: 5.56e-1

VQSLOD
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SIO_000300: 2.37e0

DP
type: SiteQuality
SIO_000300: 1.692674e6

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.367e1

MQ
type: SiteQuality
SIO_000300: 5.96e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.122e0

QD
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SIO_000300: 1.18e1

InbreedingCoeff
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SIO_000300: -1.0e-4

DP
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SIO_000300: 1.692121e6

FS
type: SiteQuality
SIO_000300: 1.13e0

VQSLOD
type: SiteQuality
SIO_000300: 6.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.517e0

MQRankSum
type: SiteQuality
SIO_000300: 9.84e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.94e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.96e-1

DP
type: SiteQuality
SIO_000300: 1.692078e6

MQRankSum
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SIO_000300: -1.824e0

BaseQRankSum
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InbreedingCoeff
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SIO_000300: -1.0e-4

QD
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SIO_000300: 1.088e1

ReadPosRankSum
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SIO_000300: -6.61e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

VQSLOD
type: SiteQuality
SIO_000300: 4.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.71e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.496133325340207e-5
allele num: 66724
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
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DP
type: SiteQuality
SIO_000300: 1.692218e6

MQRankSum
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BaseQRankSum
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QD
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VQSLOD
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FS
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SIO_000300: 2.46e0

InbreedingCoeff
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SIO_000300: -1.0e-4

MQ
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SIO_000300: 5.968e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10400
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.498935755613514e-5
allele num: 66714
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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Other
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BaseQRankSum
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SIO_000300: 5.94e-1

ReadPosRankSum
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VQSLOD
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DP
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FS
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InbreedingCoeff
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MQRankSum
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MQ
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SIO_000300: 5.976e1

ClippingRankSum
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QD
type: SiteQuality
SIO_000300: 8.0e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499115521842113e-5
allele num: 66706
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Latino
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Other
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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MQRankSum
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DP
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FS
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BaseQRankSum
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MQ
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ReadPosRankSum
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QD
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