14-24911284-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911284
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911284
    reference: chr 14
allele count: 0
allele frequency: 0.0e0
allele num: 19458
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.398C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.356+20C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450946
  ensembl transcript: ENST00000555355
  gene symbol: SDR39U1
  hgvsc: ENST00000555355.1:c.-460+100C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.582+100C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-292+100C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-279+100C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.96+268C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.514+100C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.580+20C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.4+20C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.82+100C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.206+100C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.699C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-296+268C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452076
  ensembl transcript: ENST00000553343
  gene symbol: SDR39U1
  hgvsc: ENST00000553343.1:c.10+31C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-292+31C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.277+100C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555778
  gene symbol: SDR39U1
  hgvsc: ENST00000555778.1:n.104+100C>G
  variant of: http://identifiers.org/hgnc/20275
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35304
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1988
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD

14-24911300-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911300
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911300
    reference: chr 14
allele count: 1
allele frequency: 4.795243118826125e-5
allele num: 20854
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.356+4A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555778
  gene symbol: SDR39U1
  hgvsc: ENST00000555778.1:n.104+84A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.4+4A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-292+84A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.277+84A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.514+84A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.96+252A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-296+252A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450946
  ensembl transcript: ENST00000555355
  gene symbol: SDR39U1
  hgvsc: ENST00000555355.1:c.-460+84A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.580+4A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.582+84A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-279+84A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.382A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.206+84A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452076
  ensembl transcript: ENST00000553343
  gene symbol: SDR39U1
  hgvsc: ENST00000553343.1:c.10+15A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.82+84A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.683A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-292+15A>G
  variant of: http://identifiers.org/hgnc/20275
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: n.580+4A>G
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

14-24911308-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911308
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911308
    reference: chr 14
allele count: 2
allele frequency: 9.1441111923921e-5
allele num: 21872
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-292+7T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555778
  gene symbol: SDR39U1
  hgvsc: ENST00000555778.1:n.104+76T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.576T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-296+244T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.206+76T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.277+76T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.352T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.374T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.82+76T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452076
  ensembl transcript: ENST00000553343
  gene symbol: SDR39U1
  hgvsc: ENST00000553343.1:c.10+7T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-1T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450946
  ensembl transcript: ENST00000555355
  gene symbol: SDR39U1
  hgvsc: ENST00000555355.1:c.-460+76T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.675T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.514+76T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.582+76T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.96+244T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-292+76T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-279+76T>C
  variant of: http://identifiers.org/hgnc/20275
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3606
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25652
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.10+7T>C
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

14-24911316-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911316
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911316
    reference: chr 14
allele count: 2
allele frequency: 8.509189925119128e-5
allele num: 23504
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.582+68C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-292+68C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.366C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450946
  ensembl transcript: ENST00000555355
  gene symbol: SDR39U1
  hgvsc: ENST00000555355.1:c.-460+68C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.96+236C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.206+68C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452076
  ensembl transcript: ENST00000553343
  gene symbol: SDR39U1
  hgvsc: ENST00000553343.1:c.9C>T
  hgvsp: ENST00000553343.1:c.9C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.344C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.277+68C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-293C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-279+68C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.568C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.514+68C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.667C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.82+68C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-9C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555778
  gene symbol: SDR39U1
  hgvsc: ENST00000555778.1:n.104+68C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-296+236C>T
  variant of: http://identifiers.org/hgnc/20275
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2053
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3767
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.9C>T
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

14-24911317-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911317
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911317
    reference: chr 14
allele count: 1
allele frequency: 4.217629692113033e-5
allele num: 23710
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555778
  gene symbol: SDR39U1
  hgvsc: ENST00000555778.1:n.104+67C>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450946
  ensembl transcript: ENST00000555355
  gene symbol: SDR39U1
  hgvsc: ENST00000555355.1:c.-460+67C>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-10C>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-294C>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-292+67C>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.82+67C>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.567C>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.666C>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.365C>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.206+67C>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.277+67C>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452076
  ensembl transcript: ENST00000553343
  gene symbol: SDR39U1
  hgvsc: ENST00000553343.1:c.8C>A
  hgvsp: ENSP00000452076.1:p.Thr3Asn
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.514+67C>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.96+235C>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-279+67C>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.343C>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.582+67C>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-296+235C>A
  variant of: http://identifiers.org/hgnc/20275
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20089
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2118
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Thr3Asn
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ClippingRankSum

14-24911361-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911361
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911361
    reference: chr 14
allele count: 21
allele frequency: 3.943661971830986e-4
allele num: 53250
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.321A>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.523A>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.206+23A>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-292+23A>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-338A>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555778
  gene symbol: SDR39U1
  hgvsc: ENST00000555778.1:n.104+23A>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.582+23A>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.299A>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-54A>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-296+191A>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.82+23A>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452076
  ensembl transcript: ENST00000553343
  gene symbol: SDR39U1
  hgvsc: ENST00000553343.1:c.-37A>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.514+23A>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.622A>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.96+191A>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-279+23A>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.277+23A>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450946
  ensembl transcript: ENST00000555355
  gene symbol: SDR39U1
  hgvsc: ENST00000555355.1:c.-460+23A>C
  variant of: http://identifiers.org/hgnc/20275
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31393
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12685
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

14-24911366-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911366
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911366
    reference: chr 14
allele count: 1
allele frequency: 1.690845761049677e-5
allele num: 59142
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.96+186A>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555778
  gene symbol: SDR39U1
  hgvsc: ENST00000555778.1:n.104+18A>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-296+186A>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452076
  ensembl transcript: ENST00000553343
  gene symbol: SDR39U1
  hgvsc: ENST00000553343.1:c.-42A>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.82+18A>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.277+18A>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.617A>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.206+18A>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-59A>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450946
  ensembl transcript: ENST00000555355
  gene symbol: SDR39U1
  hgvsc: ENST00000555355.1:c.-460+18A>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.514+18A>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-343A>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-292+18A>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.518A>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.316A>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.294A>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.582+18A>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-279+18A>C
  variant of: http://identifiers.org/hgnc/20275
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5131
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4926
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15412
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS

14-24911368-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911368
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911368
    reference: chr 14
allele count: 1
allele frequency: 1.633506485020745e-5
allele num: 61218
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-61A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.314A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-279+16A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.514+16A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.277+16A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.292A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-296+184A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.615A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450946
  ensembl transcript: ENST00000555355
  gene symbol: SDR39U1
  hgvsc: ENST00000555355.1:c.-460+16A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.516A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452076
  ensembl transcript: ENST00000553343
  gene symbol: SDR39U1
  hgvsc: ENST00000553343.1:c.-44A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.582+16A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555778
  gene symbol: SDR39U1
  hgvsc: ENST00000555778.1:n.104+16A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-345A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.206+16A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-292+16A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.96+184A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.82+16A>G
  variant of: http://identifiers.org/hgnc/20275
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28177
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5017
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD

14-24911376-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911376
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911376
    reference: chr 14
allele count: 1
allele frequency: 1.429306500485964e-5
allele num: 69964
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450946
  ensembl transcript: ENST00000555355
  gene symbol: SDR39U1
  hgvsc: ENST00000555355.1:c.-460+8C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-69C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.82+8C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.514+8C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452076
  ensembl transcript: ENST00000553343
  gene symbol: SDR39U1
  hgvsc: ENST00000553343.1:c.-52C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-279+8C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.277+8C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-292+8C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.96+176C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-296+176C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.206+8C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.582+8C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.284C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.508C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555778
  gene symbol: SDR39U1
  hgvsc: ENST00000555778.1:n.104+8C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-353C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.306C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.607C>G
  variant of: http://identifiers.org/hgnc/20275
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4822
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.206+8C>G
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

14-24911381-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911381
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911381
    reference: chr 14
allele count: 6
allele frequency: 8.022462896109105e-5
allele num: 74790
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452076
  ensembl transcript: ENST00000553343
  gene symbol: SDR39U1
  hgvsc: ENST00000553343.1:c.-57C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.503C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.514+3C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-296+171C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555778
  gene symbol: SDR39U1
  hgvsc: ENST00000555778.1:n.104+3C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-358C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.279C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.206+3C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.82+3C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-292+3C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.277+3C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.582+3C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450946
  ensembl transcript: ENST00000555355
  gene symbol: SDR39U1
  hgvsc: ENST00000555355.1:c.-460+3C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-279+3C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.301C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.602C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.96+171C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-74C>T
  variant of: http://identifiers.org/hgnc/20275
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.206+3C>T
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Latino
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD

14-24911390-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911390
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911390
    reference: chr 14
allele count: 2
allele frequency: 2.453566258556812e-5
allele num: 81514
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.200T>C
  hgvsp: ENSP00000382327.3:p.Leu67Pro
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555778
  gene symbol: SDR39U1
  hgvsc: ENST00000555778.1:n.98T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.270T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-367T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.494T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-285T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.96+162T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-298T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452076
  ensembl transcript: ENST00000553343
  gene symbol: SDR39U1
  hgvsc: ENST00000553343.1:c.-66T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.576T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.76T>C
  hgvsp: ENSP00000446077.2:p.Ser26Pro
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450946
  ensembl transcript: ENST00000555355
  gene symbol: SDR39U1
  hgvsc: ENST00000555355.1:c.-466T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.292T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.508T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-83T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-296+162T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.593T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.271T>C
  variant of: http://identifiers.org/hgnc/20275
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4525
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Leu67Pro
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum

14-24911401-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911401
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911401
    reference: chr 14
allele count: 1
allele frequency: 1.151967560593494e-5
allele num: 86808
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-378C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450946
  ensembl transcript: ENST00000555355
  gene symbol: SDR39U1
  hgvsc: ENST00000555355.1:c.-477C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.497C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.96+151C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-296C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.281C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-94C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-309C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.65C>G
  hgvsp: ENSP00000446077.2:p.Ser22Cys
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.260C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452076
  ensembl transcript: ENST00000553343
  gene symbol: SDR39U1
  hgvsc: ENST00000553343.1:c.-77C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.259C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.565C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.189C>G
  hgvsp: ENSP00000382327.3:p.Ile63Met
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.582C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-296+151C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555778
  gene symbol: SDR39U1
  hgvsc: ENST00000555778.1:n.87C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.483C>G
  variant of: http://identifiers.org/hgnc/20275
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16508
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4704
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ile63Met
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

14-24911413-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911413
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911413
    reference: chr 14
allele count: 2
allele frequency: 2.232691062537677e-5
allele num: 89578
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-390C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-321C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452076
  ensembl transcript: ENST00000553343
  gene symbol: SDR39U1
  hgvsc: ENST00000553343.1:c.-89C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.485C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.248C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.553C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555778
  gene symbol: SDR39U1
  hgvsc: ENST00000555778.1:n.75C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-296+139C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.269C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.247C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450946
  ensembl transcript: ENST00000555355
  gene symbol: SDR39U1
  hgvsc: ENST00000555355.1:c.-489C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.177C>G
  hgvsp: ENST00000399395.3:c.177C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.53C>G
  hgvsp: ENSP00000446077.2:p.Pro18Arg
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-308C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.570C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-106C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.96+139C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.471C>G
  variant of: http://identifiers.org/hgnc/20275
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro18Arg
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/14-24911416-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911416
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911416
    reference: chr 14
allele count: 2
allele frequency: 2.209847078582162e-5
allele num: 90504
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.567G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.50G>T
  hgvsp: ENSP00000446077.2:p.Trp17Leu
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450946
  ensembl transcript: ENST00000555355
  gene symbol: SDR39U1
  hgvsc: ENST00000555355.1:c.-492G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-311G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.482G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452076
  ensembl transcript: ENST00000553343
  gene symbol: SDR39U1
  hgvsc: ENST00000553343.1:c.-92G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.174G>T
  hgvsp: ENST00000399395.3:c.174G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-393G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.245G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.468G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.244G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.266G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.96+136G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-324G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555778
  gene symbol: SDR39U1
  hgvsc: ENST00000555778.1:n.72G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.550G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-109G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-296+136G>T
  variant of: http://identifiers.org/hgnc/20275
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7824
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Trp17Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

14-24911420-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911420
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911420
    reference: chr 14
allele count: 1
allele frequency: 1.098442408664514e-5
allele num: 91038
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452076
  ensembl transcript: ENST00000553343
  gene symbol: SDR39U1
  hgvsc: ENST00000553343.1:c.-96A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.240A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.46A>G
  hgvsp: ENSP00000446077.2:p.Thr16Ala
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450946
  ensembl transcript: ENST00000555355
  gene symbol: SDR39U1
  hgvsc: ENST00000555355.1:c.-496A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.262A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-315A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-397A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-113A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-296+132A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.464A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.478A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.96+132A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.546A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.563A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.170A>G
  hgvsp: ENSP00000382327.3:p.Asn57Ser
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-328A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.241A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555778
  gene symbol: SDR39U1
  hgvsc: ENST00000555778.1:n.68A>G
  variant of: http://identifiers.org/hgnc/20275
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn57Ser
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ

14-24911424-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911424
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911424
    reference: chr 14
allele count: 2
allele frequency: 2.195534283267833e-5
allele num: 91094
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.236G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.42G>A
  hgvsp: ENST00000538105.2:c.42G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452076
  ensembl transcript: ENST00000553343
  gene symbol: SDR39U1
  hgvsc: ENST00000553343.1:c.-100G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450946
  ensembl transcript: ENST00000555355
  gene symbol: SDR39U1
  hgvsc: ENST00000555355.1:c.-500G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555778
  gene symbol: SDR39U1
  hgvsc: ENST00000555778.1:n.64G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.96+128G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-401G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.166G>A
  hgvsp: ENSP00000382327.3:p.Val56Ile
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-296+128G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-117G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.542G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.237G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.258G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-319G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.474G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-332G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.559G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.460G>A
  variant of: http://identifiers.org/hgnc/20275
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24652
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val56Ile
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

14-24911425-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911425
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911425
    reference: chr 14
allele count: 5
allele frequency: 5.472974452155257e-5
allele num: 91358
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.459C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.165C>G
  hgvsp: ENST00000399395.3:c.165C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450946
  ensembl transcript: ENST00000555355
  gene symbol: SDR39U1
  hgvsc: ENST00000555355.1:c.-501C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555778
  gene symbol: SDR39U1
  hgvsc: ENST00000555778.1:n.63C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-333C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-402C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.235C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.236C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.41C>G
  hgvsp: ENSP00000446077.2:p.Pro14Arg
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-296+127C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452076
  ensembl transcript: ENST00000553343
  gene symbol: SDR39U1
  hgvsc: ENST00000553343.1:c.-101C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.257C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.473C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-320C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-118C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.558C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.96+127C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.541C>G
  variant of: http://identifiers.org/hgnc/20275
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7863
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro14Arg
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS

14-24911428-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911428
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911428
    reference: chr 14
allele count: 1
allele frequency: 1.092633465177771e-5
allele num: 91522
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.254C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452076
  ensembl transcript: ENST00000553343
  gene symbol: SDR39U1
  hgvsc: ENST00000553343.1:c.-104C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.233C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.555C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-405C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-323C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-336C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.38C>T
  hgvsp: ENSP00000446077.2:p.Pro13Leu
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.538C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.162C>T
  hgvsp: ENST00000399395.3:c.162C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.232C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-296+124C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450946
  ensembl transcript: ENST00000555355
  gene symbol: SDR39U1
  hgvsc: ENST00000555355.1:c.-504C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555778
  gene symbol: SDR39U1
  hgvsc: ENST00000555778.1:n.60C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.470C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.456C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-121C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.96+124C>T
  variant of: http://identifiers.org/hgnc/20275
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24118
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7863
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13969
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro13Leu
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

14-24911432-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911432
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911432
    reference: chr 14
allele count: 29
allele frequency: 3.167045255984623e-4
allele num: 91568
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.96+120A>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-125A>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.534A>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450946
  ensembl transcript: ENST00000555355
  gene symbol: SDR39U1
  hgvsc: ENST00000555355.1:c.-508A>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.158A>T
  hgvsp: ENSP00000382327.3:p.Asp53Val
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.466A>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555778
  gene symbol: SDR39U1
  hgvsc: ENST00000555778.1:n.56A>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.452A>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.34A>T
  hgvsp: ENSP00000446077.2:p.Met12Leu
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452076
  ensembl transcript: ENST00000553343
  gene symbol: SDR39U1
  hgvsc: ENST00000553343.1:c.-108A>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-409A>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-340A>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.229A>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-327A>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.228A>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-296+120A>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.250A>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.551A>T
  variant of: http://identifiers.org/hgnc/20275
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13988
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7842
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
hgvs: p.Asp53Val
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/14-24911433-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911433
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911433
    reference: chr 14
allele count: 1
allele frequency: 1.096082600784795e-5
allele num: 91234
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450946
  ensembl transcript: ENST00000555355
  gene symbol: SDR39U1
  hgvsc: ENST00000555355.1:c.-509G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.33G>T
  hgvsp: ENST00000538105.2:c.33G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-296+119G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.157G>T
  hgvsp: ENSP00000382327.3:p.Asp53Tyr
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452076
  ensembl transcript: ENST00000553343
  gene symbol: SDR39U1
  hgvsc: ENST00000553343.1:c.-109G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-341G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.228G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-410G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.550G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.533G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.451G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.249G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-328G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-126G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.227G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.465G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555778
  gene symbol: SDR39U1
  hgvsc: ENST00000555778.1:n.55G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.96+119G>T
  variant of: http://identifiers.org/hgnc/20275
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14020
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21649
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp53Tyr
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

14-24911433-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911433
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911433
    reference: chr 14
allele count: 1
allele frequency: 1.096082600784795e-5
allele num: 91234
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.227G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-126G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-328G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555778
  gene symbol: SDR39U1
  hgvsc: ENST00000555778.1:n.55G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.465G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.33G>C
  hgvsp: ENST00000538105.2:c.33G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.228G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.157G>C
  hgvsp: ENSP00000382327.3:p.Asp53His
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.96+119G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-296+119G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.451G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.550G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450946
  ensembl transcript: ENST00000555355
  gene symbol: SDR39U1
  hgvsc: ENST00000555355.1:c.-509G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-341G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.533G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452076
  ensembl transcript: ENST00000553343
  gene symbol: SDR39U1
  hgvsc: ENST00000553343.1:c.-109G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-410G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.249G>C
  variant of: http://identifiers.org/hgnc/20275
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21649
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7793
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp53His
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS

14-24911440-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911440
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911440
    reference: chr 14
allele count: 3
allele frequency: 3.309650942147301e-5
allele num: 90644
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-417G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-348G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.26G>A
  hgvsp: ENSP00000446077.2:p.Arg9Gln
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.96+112G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-335G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.458G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.221G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.543G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.220G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555778
  gene symbol: SDR39U1
  hgvsc: ENST00000555778.1:n.48G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-133G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.444G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.150G>A
  hgvsp: ENST00000399395.3:c.150G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452076
  ensembl transcript: ENST00000553343
  gene symbol: SDR39U1
  hgvsc: ENST00000553343.1:c.-116G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.526G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-296+112G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.242G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450946
  ensembl transcript: ENST00000555355
  gene symbol: SDR39U1
  hgvsc: ENST00000555355.1:c.-516G>A
  variant of: http://identifiers.org/hgnc/20275
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10832
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19271
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg9Gln
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

14-24911441-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911441
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911441
    reference: chr 14
allele count: 1
allele frequency: 1.101806963420009e-5
allele num: 90760
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.149C>G
  hgvsp: ENSP00000382327.3:p.Pro50Arg
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-349C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-134C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-336C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.219C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.96+111C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450946
  ensembl transcript: ENST00000555355
  gene symbol: SDR39U1
  hgvsc: ENST00000555355.1:c.-517C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.25C>G
  hgvsp: ENSP00000446077.2:p.Arg9Gly
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452076
  ensembl transcript: ENST00000553343
  gene symbol: SDR39U1
  hgvsc: ENST00000553343.1:c.-117C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.542C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.525C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-418C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555778
  gene symbol: SDR39U1
  hgvsc: ENST00000555778.1:n.47C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.443C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.220C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-296+111C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.457C>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.241C>G
  variant of: http://identifiers.org/hgnc/20275
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro50Arg
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum

14-24911441-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911441
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911441
    reference: chr 14
allele count: 1
allele frequency: 1.101806963420009e-5
allele num: 90760
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-349C>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.149C>A
  hgvsp: ENSP00000382327.3:p.Pro50Gln
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.241C>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.25C>A
  hgvsp: ENST00000538105.2:c.25C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-296+111C>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.219C>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.525C>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-336C>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-134C>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.443C>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555778
  gene symbol: SDR39U1
  hgvsc: ENST00000555778.1:n.47C>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.220C>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.96+111C>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452076
  ensembl transcript: ENST00000553343
  gene symbol: SDR39U1
  hgvsc: ENST00000553343.1:c.-117C>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450946
  ensembl transcript: ENST00000555355
  gene symbol: SDR39U1
  hgvsc: ENST00000555355.1:c.-517C>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.457C>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.542C>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-418C>A
  variant of: http://identifiers.org/hgnc/20275
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10859
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro50Gln
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

14-24911443-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911443
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911443
    reference: chr 14
allele count: 1
allele frequency: 1.103825860432258e-5
allele num: 90594
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.218G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.523G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.441G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-351G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.147G>A
  hgvsp: ENST00000399395.3:c.147G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555778
  gene symbol: SDR39U1
  hgvsc: ENST00000555778.1:n.45G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.239G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.96+109G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.455G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-338G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.23G>A
  hgvsp: ENSP00000446077.2:p.Cys8Tyr
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-136G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-420G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.217G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452076
  ensembl transcript: ENST00000553343
  gene symbol: SDR39U1
  hgvsc: ENST00000553343.1:c.-119G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.540G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-296+109G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450946
  ensembl transcript: ENST00000555355
  gene symbol: SDR39U1
  hgvsc: ENST00000555355.1:c.-519G>A
  variant of: http://identifiers.org/hgnc/20275
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14144
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7491
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11362
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys8Tyr
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: QD
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

14-24911449-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911449
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911449
    reference: chr 14
allele count: 501
allele frequency: 5.564811729423525e-3
allele num: 90030
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555778
  gene symbol: SDR39U1
  hgvsc: ENST00000555778.1:n.39G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.517G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.141G>C
  hgvsp: ENST00000399395.3:c.141G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-426G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-142G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450946
  ensembl transcript: ENST00000555355
  gene symbol: SDR39U1
  hgvsc: ENST00000555355.1:c.-525G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.449G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.233G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.211G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452076
  ensembl transcript: ENST00000553343
  gene symbol: SDR39U1
  hgvsc: ENST00000553343.1:c.-125G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.17G>C
  hgvsp: ENSP00000446077.2:p.Arg6Pro
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-296+103G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.435G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.96+103G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.212G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-357G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-344G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.534G>C
  variant of: http://identifiers.org/hgnc/20275
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5894
  bin: 1.75e1
  variant carriers: 135
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
hgvs: p.Arg6Pro
num of homozygotes: 2
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

14-24911452-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911452
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911452
    reference: chr 14
allele count: 4936
allele frequency: 5.426561125769569e-2
allele num: 90960
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.446A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.138A>G
  hgvsp: ENST00000399395.3:c.138A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.531A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.208A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-296+100A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.432A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-347A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.14A>G
  hgvsp: ENSP00000446077.2:p.His5Arg
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-360A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.514A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.230A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450946
  ensembl transcript: ENST00000555355
  gene symbol: SDR39U1
  hgvsc: ENST00000555355.1:c.-528A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452076
  ensembl transcript: ENST00000553343
  gene symbol: SDR39U1
  hgvsc: ENST00000553343.1:c.-128A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-145A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.96+100A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.209A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-429A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555778
  gene symbol: SDR39U1
  hgvsc: ENST00000555778.1:n.36A>G
  variant of: http://identifiers.org/hgnc/20275
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.75e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 3.75e1
  variant carriers: 123
genotype depth: GenotypeDepth
  all individuals: 6277
  bin: 1.75e1
  variant carriers: 1276
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 1968
  bin: 3.25e1
  variant carriers: 254
genotype quality: GenotypeQuality
hgvs: p.His5Arg
num of homozygotes: 161
population: South Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

14-24911465-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911465
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911465
    reference: chr 14
allele count: 4
allele frequency: 4.522226744448967e-5
allele num: 88452
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.196A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555778
  gene symbol: SDR39U1
  hgvsc: ENST00000555778.1:n.23A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.518A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-158A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-373A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.419A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.96+87A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-442A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.433A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452076
  ensembl transcript: ENST00000553343
  gene symbol: SDR39U1
  hgvsc: ENST00000553343.1:c.-141A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-360A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.501A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: start_lost
  consequence: splice_region_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.1A>G
  hgvsp: ENSP00000446077.2:p.Met1?
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.195A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-296+87A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450946
  ensembl transcript: ENST00000555355
  gene symbol: SDR39U1
  hgvsc: ENST00000555355.1:c.-541A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.217A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.125A>G
  hgvsp: ENSP00000382327.3:p.Asp42Gly
  variant of: http://identifiers.org/hgnc/20275
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met1?
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/14-24911467-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911467
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911467
    reference: chr 14
allele count: 2
allele frequency: 2.272365759992728e-5
allele num: 88014
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-361-1G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.193G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.417G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-296+85G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-159-1G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.215G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-374-1G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.432-1G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.-1-1G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555778
  gene symbol: SDR39U1
  hgvsc: ENST00000555778.1:n.21G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452076
  ensembl transcript: ENST00000553343
  gene symbol: SDR39U1
  hgvsc: ENST00000553343.1:c.-142-1G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450946
  ensembl transcript: ENST00000555355
  gene symbol: SDR39U1
  hgvsc: ENST00000555355.1:c.-543G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.195-1G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.516G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-443-1G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.96+85G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.124-1G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.499G>T
  variant of: http://identifiers.org/hgnc/20275
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11489
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6518
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.124-1G>T
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP

14-24911468-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911468
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911468
    reference: chr 14
allele count: 1
allele frequency: 1.135228407955681e-5
allele num: 88088
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.416A>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.432-2A>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-159-2A>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.498A>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.124-2A>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-443-2A>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.-1-2A>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.214A>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555778
  gene symbol: SDR39U1
  hgvsc: ENST00000555778.1:n.20A>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-374-2A>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-361-2A>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452076
  ensembl transcript: ENST00000553343
  gene symbol: SDR39U1
  hgvsc: ENST00000553343.1:c.-142-2A>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.195-2A>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.192A>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.515A>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-296+84A>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450946
  ensembl transcript: ENST00000555355
  gene symbol: SDR39U1
  hgvsc: ENST00000555355.1:c.-544A>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.96+84A>T
  variant of: http://identifiers.org/hgnc/20275
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14860
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17628
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6213
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.124-2A>T
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum

14-24911471-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911471
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911471
    reference: chr 14
allele count: 1
allele frequency: 1.143981513258746e-5
allele num: 87414
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.195-5G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.211G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.512G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.189G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-374-5G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.-1-5G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-296+81G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450946
  ensembl transcript: ENST00000555355
  gene symbol: SDR39U1
  hgvsc: ENST00000555355.1:c.-547G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.124-5G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-443-5G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-361-5G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.413G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-159-5G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.96+81G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.432-5G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555778
  gene symbol: SDR39U1
  hgvsc: ENST00000555778.1:n.17G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452076
  ensembl transcript: ENST00000553343
  gene symbol: SDR39U1
  hgvsc: ENST00000553343.1:c.-142-5G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.495G>A
  variant of: http://identifiers.org/hgnc/20275
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6120
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.124-5G>A
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ

14-24911472-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911472
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911472
    reference: chr 14
allele count: 4
allele frequency: 4.590314436538903e-5
allele num: 87140
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450946
  ensembl transcript: ENST00000555355
  gene symbol: SDR39U1
  hgvsc: ENST00000555355.1:c.-548C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555778
  gene symbol: SDR39U1
  hgvsc: ENST00000555778.1:n.16C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.494C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.188C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-159-6C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.195-6C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.-1-6C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-374-6C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.412C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-296+80C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.511C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452076
  ensembl transcript: ENST00000553343
  gene symbol: SDR39U1
  hgvsc: ENST00000553343.1:c.-142-6C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.210C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-361-6C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-443-6C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.432-6C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.96+80C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.124-6C>T
  variant of: http://identifiers.org/hgnc/20275
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.124-6C>T
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

14-24911485-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911485
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911485
    reference: chr 14
allele count: 1
allele frequency: 1.180944283048726e-5
allele num: 84678
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.481T>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.175T>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-443-19T>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-296+67T>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-361-19T>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.399T>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.195-19T>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-374-19T>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.197T>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.-1-19T>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.124-19T>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-159-19T>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555778
  gene symbol: SDR39U1
  hgvsc: ENST00000555778.1:n.3T>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452076
  ensembl transcript: ENST00000553343
  gene symbol: SDR39U1
  hgvsc: ENST00000553343.1:c.-142-19T>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.432-19T>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.498T>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.96+67T>A
  variant of: http://identifiers.org/hgnc/20275
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5534
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15633
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19042
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7154
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/14-24911490-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911490
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911490
    reference: chr 14
allele count: 1
allele frequency: 1.247660636306924e-5
allele num: 80150
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-374-24G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-361-24G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-159-24G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.493G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.394G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.192G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.432-24G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452076
  ensembl transcript: ENST00000553343
  gene symbol: SDR39U1
  hgvsc: ENST00000553343.1:c.-142-24G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.195-24G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.96+62G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.-1-24G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-296+62G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.476G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.170G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.124-24G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-443-24G>T
  variant of: http://identifiers.org/hgnc/20275
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16223
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1866
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6185
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5196
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/14-24911495-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911495
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911495
    reference: chr 14
allele count: 1
allele frequency: 1.2261513561234e-5
allele num: 81556
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.96+57G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.195-29G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.-1-29G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.187G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-374-29G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-361-29G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-159-29G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.165G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452076
  ensembl transcript: ENST00000553343
  gene symbol: SDR39U1
  hgvsc: ENST00000553343.1:c.-142-29G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.389G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.432-29G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-443-29G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.488G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.471G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-296+57G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.124-29G>T
  variant of: http://identifiers.org/hgnc/20275
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6418
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16468
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18703
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

14-24911496-CCCGCCCTGCG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911496
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911486
    reference: chr 14
allele count: 2
allele frequency: 2.43944088015027e-5
allele num: 81986
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452076
  ensembl transcript: ENST00000553343
  gene symbol: SDR39U1
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  variant of: http://identifiers.org/hgnc/20275
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6473
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8846
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16455
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5340
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18759
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: CCCGCCCTGCG
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP

14-24911503-TGCGCCGCCCA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911503
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911493
    reference: chr 14
allele count: 1189
allele frequency: 1.453545232273839e-2
allele num: 81800
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452076
  ensembl transcript: ENST00000553343
  gene symbol: SDR39U1
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  variant of: http://identifiers.org/hgnc/20275
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 3.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 3.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 2.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 18279
  bin: 1.25e1
  variant carriers: 365
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 4.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 8588
  bin: 1.75e1
  variant carriers: 288
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 5200
  bin: 2.75e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 7045
  bin: 2.25e1
  variant carriers: 157
genotype quality: GenotypeQuality
num of homozygotes: 82
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: TGCGCCGCCCA
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS

14-24911506-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911506
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911506
    reference: chr 14
allele count: 3
allele frequency: 3.794298434219513e-5
allele num: 79066
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.460C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-443-40C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-374-40C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-361-40C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.96+46C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.378C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.477C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.195-40C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-296+46C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.432-40C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.124-40C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-159-40C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.154C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.176C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452076
  ensembl transcript: ENST00000553343
  gene symbol: SDR39U1
  hgvsc: ENST00000553343.1:c.-142-40C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.-1-40C>T
  variant of: http://identifiers.org/hgnc/20275
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8078
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16826
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5080
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17852
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 1
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD

14-24911508-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911508
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911508
    reference: chr 14
allele count: 2
allele frequency: 2.513004799839168e-5
allele num: 79586
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.458G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-443-42G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.174G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.152G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.-1-42G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-296+44G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.432-42G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452076
  ensembl transcript: ENST00000553343
  gene symbol: SDR39U1
  hgvsc: ENST00000553343.1:c.-142-42G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-159-42G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.96+44G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.376G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.195-42G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.475G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.124-42G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-374-42G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-361-42G>C
  variant of: http://identifiers.org/hgnc/20275
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7450
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5125
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16869
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17757
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD

14-24911510-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911510
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911510
    reference: chr 14
allele count: 2
allele frequency: 2.521813688404701e-5
allele num: 79308
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.431+42G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.96+42G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-375+42G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.456G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.172G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.194+42G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.374G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-362+42G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.150G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.473G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452076
  ensembl transcript: ENST00000553343
  gene symbol: SDR39U1
  hgvsc: ENST00000553343.1:c.-143+42G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-444+42G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.-2+42G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.123+42G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-296+42G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-160+42G>A
  variant of: http://identifiers.org/hgnc/20275
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16968
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17607
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/14-24911514-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911514
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911513
    reference: chr 14
allele count: 1
allele frequency: 1.254610694301558e-5
allele num: 79706
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-160+37delG
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.-2+37delG
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-375+37delG
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.123+37delG
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-296+37delG
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-444+37delG
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.167delG
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.369delG
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.96+37delG
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.451delG
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-362+37delG
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452076
  ensembl transcript: ENST00000553343
  gene symbol: SDR39U1
  hgvsc: ENST00000553343.1:c.-143+37delG
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.468delG
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.145delG
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.194+37delG
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.431+37delG
  variant of: http://identifiers.org/hgnc/20275
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17684
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5217
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17063
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8145
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1599
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
reference allele: AC
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS

14-24911517-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911517
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911518
    reference: chr 14
allele count: 3
allele frequency: 3.664077385314378e-5
allele num: 81876
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-160+34dupA
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.194+34dupA
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-362+34dupA
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452076
  ensembl transcript: ENST00000553343
  gene symbol: SDR39U1
  hgvsc: ENST00000553343.1:c.-143+34dupA
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.-2+34dupA
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.366dupA
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.123+34dupA
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.164dupA
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-296+34dupA
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.142dupA
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.96+34dupA
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.448dupA
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-444+34dupA
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.465dupA
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-375+34dupA
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.431+34dupA
  variant of: http://identifiers.org/hgnc/20275
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8578
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5316
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

14-24911519-GCCCTCCCA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911519
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911511
    reference: chr 14
allele count: 2
allele frequency: 2.444509631367948e-5
allele num: 81816
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.439_446delTGGGAGGG
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.133_140delTGGGAGGG
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.357_364delTGGGAGGG
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.155_162delTGGGAGGG
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.456_463delTGGGAGGG
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452076
  ensembl transcript: ENST00000553343
  gene symbol: SDR39U1
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  variant of: http://identifiers.org/hgnc/20275
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 8945
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17271
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7470
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17498
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5363
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
reference allele: GCCCTCCCA
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP

14-24911526-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911526
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911526
    reference: chr 14
allele count: 9
allele frequency: 1.088771140306308e-4
allele num: 82662
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.440G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-375+26G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.431+26G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-362+26G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.358G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.134G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.156G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.-2+26G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-296+26G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.457G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.194+26G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452076
  ensembl transcript: ENST00000553343
  gene symbol: SDR39U1
  hgvsc: ENST00000553343.1:c.-143+26G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-160+26G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.123+26G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-444+26G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.96+26G>A
  variant of: http://identifiers.org/hgnc/20275
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16802
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10294
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7000
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

14-24911527-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911527
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911527
    reference: chr 14
allele count: 1
allele frequency: 1.209804253671756e-5
allele num: 82658
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.-2+25T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.456T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.155T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-444+25T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.431+25T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.194+25T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452076
  ensembl transcript: ENST00000553343
  gene symbol: SDR39U1
  hgvsc: ENST00000553343.1:c.-143+25T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-375+25T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.357T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.133T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.439T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-296+25T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-362+25T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-160+25T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.123+25T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.96+25T>C
  variant of: http://identifiers.org/hgnc/20275
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17024
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5642
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum

http://identifiers.org/exac.variant/14-24911530-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911530
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911530
    reference: chr 14
allele count: 2
allele frequency: 2.397621559413062e-5
allele num: 83416
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.152G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.453G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.130G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.436G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-296+22G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452076
  ensembl transcript: ENST00000553343
  gene symbol: SDR39U1
  hgvsc: ENST00000553343.1:c.-143+22G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.96+22G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000553937
  gene symbol: SDR39U1
  hgvsc: ENST00000553937.1:n.217G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-160+22G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-375+22G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.123+22G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-444+22G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.354G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.-2+22G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-362+22G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.194+22G>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.431+22G>T
  variant of: http://identifiers.org/hgnc/20275
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11976
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD

14-24911544-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911544
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911544
    reference: chr 14
allele count: 1
allele frequency: 1.154974475064101e-5
allele num: 86582
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.96+8C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.439C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.422C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.431+8C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-296+8C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.-2+8C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-375+8C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-362+8C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-444+8C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.194+8C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.123+8C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452076
  ensembl transcript: ENST00000553343
  gene symbol: SDR39U1
  hgvsc: ENST00000553343.1:c.-143+8C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-160+8C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000553937
  gene symbol: SDR39U1
  hgvsc: ENST00000553937.1:n.203C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.138C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.340C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.116C>T
  variant of: http://identifiers.org/hgnc/20275
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15986
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3987
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12567
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.123+8C>T
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

14-24911561-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911561
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911561
    reference: chr 14
allele count: 1
allele frequency: 1.122636849431946e-5
allele num: 89076
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.405G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-384G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.422G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.114G>C
  hgvsp: ENST00000399395.3:c.114G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.121G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452076
  ensembl transcript: ENST00000553343
  gene symbol: SDR39U1
  hgvsc: ENST00000553343.1:c.-152G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-169G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.422G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.99G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-371G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.323G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000553937
  gene symbol: SDR39U1
  hgvsc: ENST00000553937.1:n.186G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.87G>C
  hgvsp: ENSP00000450915.1:p.Asp30His
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-305G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.-11G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-453G>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.185G>C
  variant of: http://identifiers.org/hgnc/20275
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3860
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10209
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp30His
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum

14-24911564-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911564
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911564
    reference: chr 14
allele count: 3
allele frequency: 3.355629627972528e-5
allele num: 89402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000553937
  gene symbol: SDR39U1
  hgvsc: ENST00000553937.1:n.183C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452076
  ensembl transcript: ENST00000553343
  gene symbol: SDR39U1
  hgvsc: ENST00000553343.1:c.-155C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-172C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.182C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-374C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.402C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.118C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.111C>T
  hgvsp: ENST00000399395.3:c.111C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.320C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.96C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-308C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.84C>T
  hgvsp: ENSP00000450915.1:p.Pro29Ser
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.419C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.-14C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.419C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-456C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-387C>T
  variant of: http://identifiers.org/hgnc/20275
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14688
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro29Ser
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

14-24911567-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911567
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911567
    reference: chr 14
allele count: 2
allele frequency: 2.217639101412636e-5
allele num: 90186
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.179C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.81C>T
  hgvsp: ENSP00000450915.1:p.Arg28Trp
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-459C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452076
  ensembl transcript: ENST00000553343
  gene symbol: SDR39U1
  hgvsc: ENST00000553343.1:c.-158C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.317C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-377C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.-17C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-390C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.399C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.416C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.416C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000553937
  gene symbol: SDR39U1
  hgvsc: ENST00000553937.1:n.180C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.108C>T
  hgvsp: ENST00000399395.3:c.108C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.115C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.93C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-175C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-311C>T
  variant of: http://identifiers.org/hgnc/20275
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22183
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7851
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg28Trp
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

14-24911573-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911573
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911573
    reference: chr 14
allele count: 1
allele frequency: 1.103119622291841e-5
allele num: 90652
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.410C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-383C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.-23C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-317C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.311C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-181C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.410C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452076
  ensembl transcript: ENST00000553343
  gene symbol: SDR39U1
  hgvsc: ENST00000553343.1:c.-164C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000553937
  gene symbol: SDR39U1
  hgvsc: ENST00000553937.1:n.174C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.102C>T
  hgvsp: ENST00000399395.3:c.102C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-396C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.75C>T
  hgvsp: ENSP00000450915.1:p.Arg26Trp
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.173C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.87C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.393C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-465C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.109C>T
  variant of: http://identifiers.org/hgnc/20275
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14308
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8921
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8103
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg26Trp
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD

14-24911589-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911589
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911589
    reference: chr 14
allele count: 6
allele frequency: 6.571597555365709e-5
allele num: 91302
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.86T>C
  hgvsp: ENSP00000382327.3:p.Leu29Ser
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.295T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.157T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-481T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-399T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-412T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.394T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.59T>C
  hgvsp: ENST00000556249.1:c.59T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.-39T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.71T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.377T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.93T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000553937
  gene symbol: SDR39U1
  hgvsc: ENST00000553937.1:n.158T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-197T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-333T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.394T>C
  variant of: http://identifiers.org/hgnc/20275
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23874
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14236
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8582
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu29Ser
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

14-24911590-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911590
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911590
    reference: chr 14
allele count: 12
allele frequency: 1.315558673916857e-4
allele num: 91216
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.376T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.294T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.393T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.92T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-198T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000553937
  gene symbol: SDR39U1
  hgvsc: ENST00000553937.1:n.157T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.70T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.156T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.393T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.58T>C
  hgvsp: ENSP00000450915.1:p.Val20Ala
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-400T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-334T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-482T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.85T>C
  hgvsp: ENST00000399395.3:c.85T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.-40T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-413T>C
  variant of: http://identifiers.org/hgnc/20275
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23780
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Val20Ala
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD

14-24911595-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911595
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911595
    reference: chr 14
allele count: 1
allele frequency: 1.104606207886888e-5
allele num: 90530
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-339T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.-45T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.80T>C
  hgvsp: ENSP00000382327.3:p.Val27Ala
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.371T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000553937
  gene symbol: SDR39U1
  hgvsc: ENST00000553937.1:n.152T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.87T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-203T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.289T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.65T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.388T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-405T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.53T>C
  hgvsp: ENST00000556249.1:c.53T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.388T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.151T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-487T>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-418T>C
  variant of: http://identifiers.org/hgnc/20275
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8566
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8726
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14572
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val27Ala
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff

14-24911596-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911596
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911596
    reference: chr 14
allele count: 1
allele frequency: 1.10884414086756e-5
allele num: 90184
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.79G>A
  hgvsp: ENSP00000382327.3:p.Val27Met
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.387G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-406G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.387G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.370G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.150G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.64G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-204G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.52G>A
  hgvsp: ENSP00000450915.1:p.Ser18Asn
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000553937
  gene symbol: SDR39U1
  hgvsc: ENST00000553937.1:n.151G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-340G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.-46G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.86G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-419G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-488G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.288G>A
  variant of: http://identifiers.org/hgnc/20275
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14735
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8708
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2538
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1885
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val27Met
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

14-24911608-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911608
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911608
    reference: chr 14
allele count: 1
allele frequency: 1.1436936730866e-5
allele num: 87436
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.40A>G
  hgvsp: ENSP00000450915.1:p.Gln14Arg
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-418A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.67A>G
  hgvsp: ENSP00000382327.3:p.Arg23Gly
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-500A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.52A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.138A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-216A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-352A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.74A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.358A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000553937
  gene symbol: SDR39U1
  hgvsc: ENST00000553937.1:n.139A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.375A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.276A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.375A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.-58A>G
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-431A>G
  variant of: http://identifiers.org/hgnc/20275
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10002
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2603
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15926
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg23Gly
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

14-24911609-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911609
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911609
    reference: chr 14
allele count: 1
allele frequency: 1.147842056932966e-5
allele num: 87120
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.137C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-419C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-353C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.275C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.374C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.374C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.-59C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.66C>T
  hgvsp: ENST00000399395.3:c.66C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.73C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.39C>T
  hgvsp: ENSP00000450915.1:p.Gln14Ter
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-432C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-217C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.51C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000553937
  gene symbol: SDR39U1
  hgvsc: ENST00000553937.1:n.138C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-501C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.357C>T
  variant of: http://identifiers.org/hgnc/20275
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16054
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10088
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1864
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2631
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln14Ter
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum

14-24911610-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911610
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911610
    reference: chr 14
allele count: 1
allele frequency: 1.160577503365675e-5
allele num: 86164
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.65C>T
  hgvsp: ENSP00000382327.3:p.Ala22Val
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.373C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-502C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-420C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.356C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-354C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000553937
  gene symbol: SDR39U1
  hgvsc: ENST00000553937.1:n.137C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-433C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.373C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.38C>T
  hgvsp: ENST00000556249.1:c.38C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.50C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.72C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.274C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.136C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.-60C>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-218C>T
  variant of: http://identifiers.org/hgnc/20275
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10504
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8399
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2777
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16363
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala22Val
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

14-24911612-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911612
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911612
    reference: chr 14
allele count: 1
allele frequency: 1.158829119058104e-5
allele num: 86294
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.-62T>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.371T>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-435T>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-504T>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-220T>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.371T>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.36T>A
  hgvsp: ENSP00000450915.1:p.Cys13Ser
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.48T>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.63T>A
  hgvsp: ENSP00000382327.3:p.Asn21Lys
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-356T>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.70T>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-422T>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.134T>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.354T>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000553937
  gene symbol: SDR39U1
  hgvsc: ENST00000553937.1:n.135T>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.272T>A
  variant of: http://identifiers.org/hgnc/20275
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16449
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8368
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19445
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn21Lys
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: A
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

14-24911613-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911613
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911613
    reference: chr 14
allele count: 2
allele frequency: 2.323096222645542e-5
allele num: 86092
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.370A>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.133A>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.69A>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-436A>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.353A>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.62A>T
  hgvsp: ENSP00000382327.3:p.Asn21Ile
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-357A>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-505A>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-423A>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.47A>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.35A>T
  hgvsp: ENSP00000450915.1:p.Glu12Asp
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-221A>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.-63A>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000553937
  gene symbol: SDR39U1
  hgvsc: ENST00000553937.1:n.134A>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.370A>T
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.271A>T
  variant of: http://identifiers.org/hgnc/20275
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8284
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10588
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn21Ile
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

14-24911621-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911621
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911620
    reference: chr 14
allele count: 4
allele frequency: 4.820438659918053e-5
allele num: 82980
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.-72delA
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.53delA
  hgvsp: ENSP00000382327.3:p.Gln18ArgfsTer3
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.361delA
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.26delA
  hgvsp: ENSP00000450915.1:p.Ala10LeufsTer30
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.262delA
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-230delA
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.124delA
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-514delA
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.60delA
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-366delA
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-445delA
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-432delA
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.344delA
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.361delA
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.38delA
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000553937
  gene symbol: SDR39U1
  hgvsc: ENST00000553937.1:n.125delA
  variant of: http://identifiers.org/hgnc/20275
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2619
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1810
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11957
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln18ArgfsTer3
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
reference allele: CT
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

14-24911621-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911621
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911621
    reference: chr 14
allele count: 1
allele frequency: 1.205109664979513e-5
allele num: 82980
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.27G>A
  hgvsp: ENSP00000450915.1:p.Ala10Thr
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-365G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.54G>A
  hgvsp: ENST00000399395.3:c.54G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-444G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-229G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.61G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.-71G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.362G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.125G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-431G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.362G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-513G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000553937
  gene symbol: SDR39U1
  hgvsc: ENST00000553937.1:n.126G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.345G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.39G>A
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.263G>A
  variant of: http://identifiers.org/hgnc/20275
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2619
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16855
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11957
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17815
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala10Thr
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

14-24911627-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24911627
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24911627
    reference: chr 14
allele count: 1
allele frequency: 1.236644242184408e-5
allele num: 80864
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000446077
  ensembl transcript: ENST00000538105
  gene symbol: SDR39U1
  hgvsc: ENST00000538105.2:c.-77A>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000382327
  ensembl transcript: ENST00000399395
  gene symbol: SDR39U1
  hgvsc: ENST00000399395.3:c.48A>C
  hgvsp: ENST00000399395.3:c.48A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000544691
  gene symbol: SDR39U1
  hgvsc: ENST00000544691.2:n.356A>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000450915
  ensembl transcript: ENST00000556249
  gene symbol: SDR39U1
  hgvsc: ENST00000556249.1:c.21A>C
  hgvsp: ENSP00000450915.1:p.Asn8His
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556175
  gene symbol: SDR39U1
  hgvsc: ENST00000556175.1:n.257A>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556262
  gene symbol: SDR39U1
  hgvsc: ENST00000556262.1:n.356A>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451903
  ensembl transcript: ENST00000555365
  gene symbol: SDR39U1
  hgvsc: ENST00000555365.1:c.-371A>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556548
  gene symbol: SDR39U1
  hgvsc: ENST00000556548.1:n.55A>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451275
  ensembl transcript: ENST00000556523
  gene symbol: SDR39U1
  hgvsc: ENST00000556523.1:c.-519A>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452438
  ensembl transcript: ENST00000554698
  gene symbol: SDR39U1
  hgvsc: ENST00000554698.1:c.-235A>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000452499
  ensembl transcript: ENST00000553930
  gene symbol: SDR39U1
  hgvsc: ENST00000553930.1:c.-437A>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000554947
  gene symbol: SDR39U1
  hgvsc: ENST00000554947.1:n.339A>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100445
  ensembl protein: ENSP00000451593
  ensembl transcript: ENST00000555225
  gene symbol: SDR39U1
  hgvsc: ENST00000555225.1:c.-450A>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000553937
  gene symbol: SDR39U1
  hgvsc: ENST00000553937.1:n.120A>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000555830
  gene symbol: SDR39U1
  hgvsc: ENST00000555830.1:n.119A>C
  variant of: http://identifiers.org/hgnc/20275
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100445
  ensembl transcript: ENST00000556707
  gene symbol: SDR39U1
  hgvsc: ENST00000556707.1:n.33A>C
  variant of: http://identifiers.org/hgnc/20275
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14889
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13190
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asn8His
num of homozygotes: 0
reference allele: T

GenotypeDepth
all individuals: 28
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 31
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1455
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 153
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 39
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 36
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 341
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11251
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 69
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 44
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3335
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 37
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 43
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8192
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4656
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2512
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 558
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2823
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1272
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 566
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1771
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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MQ
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DP
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InbreedingCoeff
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FS
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele num: 442
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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DP
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MQRankSum
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MQ
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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FS
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ReadPosRankSum
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ClippingRankSum
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 2.503128911138924e-4
allele num: 7990
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
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SIO_000300: 4.03e-1

ClippingRankSum
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MQRankSum
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BaseQRankSum
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VQSLOD
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MQ
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SIO_000300: 5.976e1

ReadPosRankSum
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SIO_000300: -5.600000000000001e-1

InbreedingCoeff
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SIO_000300: -4.53e-2

DP
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SIO_000300: 5.30649e5

QD
type: SiteQuality
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 10982
num of homozygotes: 0

East Asian
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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MQRankSum
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MQ
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VQSLOD
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DP
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BaseQRankSum
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FS
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ReadPosRankSum
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QD
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InbreedingCoeff
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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South Asian
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African
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European (Non-Finnish)
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allele num: 11116
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Other
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ReadPosRankSum
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FS
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BaseQRankSum
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InbreedingCoeff
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DP
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MQRankSum
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VQSLOD
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MQ
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QD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 5.94900849858357e-3
allele num: 3530
num of homozygotes: 0

African
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Other
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European (Finnish)
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South Asian
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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MQ
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VQSLOD
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DP
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InbreedingCoeff
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FS
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ReadPosRankSum
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QD
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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East Asian
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South Asian
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MQ
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InbreedingCoeff
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QD
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BaseQRankSum
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FS
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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South Asian
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VQSLOD
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BaseQRankSum
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FS
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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East Asian
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European (Finnish)
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South Asian
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QD
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DP
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FS
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MQ
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InbreedingCoeff
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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European (Finnish)
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East Asian
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African
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MQ
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African
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East Asian
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European (Non-Finnish)
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VQSLOD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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Latino
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European (Finnish)
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African
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South Asian
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ReadPosRankSum
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DP
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MQRankSum
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VQSLOD
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InbreedingCoeff
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FS
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BaseQRankSum
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SIO_000300: 1.0e0

MQ
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ClippingRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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num of homozygotes: 0

East Asian
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Other
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European (Non-Finnish)
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African
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South Asian
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European (Finnish)
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MQRankSum
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QD
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MQ
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ReadPosRankSum
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VQSLOD
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FS
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.906707817322343e-5
allele num: 51194
num of homozygotes: 0

Latino
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num of homozygotes: 0

South Asian
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Other
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East Asian
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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MQRankSum
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SIO_000300: 1.19e0

InbreedingCoeff
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BaseQRankSum
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MQ
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QD
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ReadPosRankSum
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FS
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ClippingRankSum
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SIO_000300: 7.61e-1

VQSLOD
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DP
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SIO_000300: 1.135274e6

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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European (Non-Finnish)
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European (Finnish)
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East Asian
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South Asian
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Latino
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MQRankSum
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QD
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InbreedingCoeff
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VQSLOD
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DP
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ReadPosRankSum
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BaseQRankSum
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FS
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ClippingRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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European (Non-Finnish)
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African
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Other
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East Asian
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European (Finnish)
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BaseQRankSum
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DP
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QD
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InbreedingCoeff
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FS
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VQSLOD
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MQ
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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European (Finnish)
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South Asian
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East Asian
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European (Non-Finnish)
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Latino
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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VQSLOD
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DP
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MQ
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ClippingRankSum
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InbreedingCoeff
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QD
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FS
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SIO_000300: 1.756e0

GenotypeDepth
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bin: 5.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7074
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.931247585940517e-5
allele num: 51780
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.44e-1

InbreedingCoeff
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SIO_000300: -8.0e-4

QD
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MQRankSum
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SIO_000300: 4.4e-2

FS
type: SiteQuality
SIO_000300: 5.282e0

ClippingRankSum
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SIO_000300: -7.4e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.125155e6

VQSLOD
type: SiteQuality
SIO_000300: -2.415e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.4e-2

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 3

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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variant carriers: 3

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 6

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 29

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

Latino
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allele count: 1
allele frequency: 1.176470588235294e-4
allele num: 8500
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

European (Non-Finnish)
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allele count: 28
allele frequency: 5.406657913030045e-4
allele num: 51788
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.962e1

MQRankSum
type: SiteQuality
SIO_000300: 1.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.03e0

BaseQRankSum
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SIO_000300: -7.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.85e-1

FS
type: SiteQuality
SIO_000300: 1.153e0

QD
type: SiteQuality
SIO_000300: 1.271e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.66e-1

DP
type: SiteQuality
SIO_000300: 1.11027e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7084
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6716
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.938961492224764e-5
allele num: 51574
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8448
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3904
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

FS
type: SiteQuality
SIO_000300: 3.74e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: 7.06e-1

ReadPosRankSum
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SIO_000300: 5.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.186e0

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.102842e6

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

QD
type: SiteQuality
SIO_000300: 8.83e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3904
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 51574
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 1.183712121212121e-4
allele num: 8448
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6716
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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ClippingRankSum
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SIO_000300: -1.186e0

QD
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SIO_000300: 8.83e0

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.79e-1

DP
type: SiteQuality
SIO_000300: 1.102842e6

InbreedingCoeff
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SIO_000300: 4.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
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SIO_000300: -5.05e-1

BaseQRankSum
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SIO_000300: 7.06e-1

FS
type: SiteQuality
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 4.269854824935952e-4
allele num: 7026
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.860000000000001e-1

InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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MQ
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SIO_000300: 5.899e1

ClippingRankSum
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BaseQRankSum
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SIO_000300: 1.91e-1

DP
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.203948952564411e-4
allele num: 8306
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3924
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7016
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12914
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6666
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51306
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.06e-1

QD
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InbreedingCoeff
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SIO_000300: 4.4e-3

ClippingRankSum
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FS
type: SiteQuality
SIO_000300: 1.3357e1

BaseQRankSum
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SIO_000300: -6.69e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.766e0

DP
type: SiteQuality
SIO_000300: 1.079317e6

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

GenotypeDepth
all individuals: 42
bin: 8.75e1
variant carriers: 0

GenotypeDepth
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bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 30
bin: 7.25e1
variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6666
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3924
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8306
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.425313568985177e-4
allele num: 7016
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12914
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51306
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.69e-1

QD
type: SiteQuality
SIO_000300: 1.382e1

DP
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SIO_000300: 1.079317e6

ClippingRankSum
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SIO_000300: 2.48e-1

FS
type: SiteQuality
SIO_000300: 1.3357e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.06e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.766e0

GenotypeDepth
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bin: 3.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3912
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.208605269518975e-4
allele num: 8274
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51206
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7002
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12922
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.3e0

DP
type: SiteQuality
SIO_000300: 1.072392e6

FS
type: SiteQuality
SIO_000300: 4.775e0

MQ
type: SiteQuality
SIO_000300: 5.714e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.9e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.03e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.249e0

GenotypeDepth
all individuals: 28
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1879
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variant carriers: 35

GenotypeDepth
all individuals: 45
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variant carriers: 8

GenotypeDepth
all individuals: 251
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variant carriers: 4

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 23

GenotypeDepth
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variant carriers: 108

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 77

GenotypeDepth
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variant carriers: 104

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 8

GenotypeDepth
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 480

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 238
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variant carriers: 7

GenotypeQuality
all individuals: 85
bin: 9.25e1
variant carriers: 5

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12934
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 11
allele frequency: 1.575931232091691e-3
allele num: 6980
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 21
allele frequency: 5.381855458739108e-3
allele num: 3902
num of homozygotes: 1

Other
type: Population
allele count: 2
allele frequency: 3.278688524590164e-3
allele num: 610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 445
allele frequency: 8.746069182389937e-3
allele num: 50880
num of homozygotes: 1

Latino
type: Population
allele count: 22
allele frequency: 2.700049091801669e-3
allele num: 8148
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.164e1

FS
type: SiteQuality
SIO_000300: 1.137e0

InbreedingCoeff
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SIO_000300: 6.0e-3

VQSLOD
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SIO_000300: 3.62e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
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SIO_000300: 3.06e-1

ReadPosRankSum
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SIO_000300: 5.659999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.85e-1

DP
type: SiteQuality
SIO_000300: 1.047207e6

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

GenotypeDepth
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variant carriers: 41

GenotypeDepth
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variant carriers: 230

GenotypeDepth
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GenotypeDepth
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variant carriers: 553

GenotypeDepth
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variant carriers: 998

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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variant carriers: 4420

GenotypeQuality
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GenotypeQuality
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variant carriers: 19

GenotypeQuality
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variant carriers: 9

GenotypeQuality
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variant carriers: 32

GenotypeQuality
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variant carriers: 46

GenotypeQuality
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variant carriers: 56

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 19

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 639
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variant carriers: 38

GenotypeQuality
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variant carriers: 11

GenotypeQuality
all individuals: 1085
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variant carriers: 41

GenotypeQuality
all individuals: 256
bin: 8.25e1
variant carriers: 56

South Asian
type: Population
allele count: 886
allele frequency: 6.730477058644789e-2
allele num: 13164
num of homozygotes: 32

African
type: Population
allele count: 537
allele frequency: 7.55699408950183e-2
allele num: 7106
num of homozygotes: 17

Other
type: Population
allele count: 36
allele frequency: 5.787781350482315e-2
allele num: 622
num of homozygotes: 2

European (Finnish)
type: Population
allele count: 166
allele frequency: 4.158316633266533e-2
allele num: 3992
num of homozygotes: 0

Latino
type: Population
allele count: 516
allele frequency: 6.286549707602339e-2
allele num: 8208
num of homozygotes: 16

European (Non-Finnish)
type: Population
allele count: 1701
allele frequency: 3.330461683048126e-2
allele num: 51074
num of homozygotes: 28

East Asian
type: Population
allele count: 1094
allele frequency: 1.610244333235208e-1
allele num: 6794
num of homozygotes: 66

VQSLOD
type: SiteQuality
SIO_000300: 4.08e0

FS
type: SiteQuality
SIO_000300: 5.54e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
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QD
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InbreedingCoeff
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SIO_000300: 1.87e-2

MQRankSum
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SIO_000300: 7.099999999999999e-2

BaseQRankSum
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SIO_000300: -6.850000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
all individuals: 2418
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GenotypeQuality
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GenotypeQuality
all individuals: 497
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GenotypeQuality
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GenotypeQuality
all individuals: 90
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GenotypeQuality
all individuals: 660
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variant carriers: 1

GenotypeQuality
all individuals: 223
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GenotypeQuality
all individuals: 919
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 4
allele frequency: 5.830903790087463e-4
allele num: 6860
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6336
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7868
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12920
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3950
num of homozygotes: 0

Other
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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FS
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MQ
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DP
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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South Asian
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African
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East Asian
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MQ
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FS
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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MQRankSum
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QD
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InbreedingCoeff
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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South Asian
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African
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European (Finnish)
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ClippingRankSum
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InbreedingCoeff
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MQ
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VQSLOD
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ReadPosRankSum
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QD
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BaseQRankSum
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FS
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DP
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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Latino
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European (Finnish)
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East Asian
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Other
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VQSLOD
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ReadPosRankSum
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DP
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QD
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FS
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MQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Finnish)
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South Asian
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DP
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ClippingRankSum
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MQ
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VQSLOD
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QD
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European (Finnish)
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East Asian
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African
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Latino
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South Asian
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ReadPosRankSum
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DP
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VQSLOD
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FS
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 2.194329851663302e-5
allele num: 45572
num of homozygotes: 0

Other
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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MQ
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ReadPosRankSum
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FS
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QD
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ClippingRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3726
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 8.020532563362207e-5
allele num: 12468
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
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SIO_000300: 5.864e1

BaseQRankSum
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SIO_000300: -3.81e0

DP
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MQRankSum
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FS
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VQSLOD
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QD
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12518
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 46490
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3772
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 1.412429378531073e-4
allele num: 7080
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.736714136853074e-4
allele num: 5758
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.62e0

VQSLOD
type: SiteQuality
SIO_000300: 8.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.54e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.25e-1

MQ
type: SiteQuality
SIO_000300: 5.286e1

InbreedingCoeff
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SIO_000300: -8.1e-3

FS
type: SiteQuality
SIO_000300: 1.092e0

ClippingRankSum
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SIO_000300: 2.78e-1

DP
type: SiteQuality
SIO_000300: 8.76626e5

GenotypeDepth
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variant carriers: 160

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 8

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.745276844539465e-4
allele num: 45838
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5686
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 1117
allele frequency: 1.692937253713246e-1
allele num: 6598
num of homozygotes: 82

South Asian
type: Population
allele count: 1
allele frequency: 8.064516129032258e-5
allele num: 12400
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Latino
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allele count: 58
allele frequency: 8.304696449026346e-3
allele num: 6984
num of homozygotes: 0

Other
type: Population
allele count: 5
allele frequency: 8.19672131147541e-3
allele num: 610
num of homozygotes: 0

VQSLOD
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SIO_000300: 2.32e0

QD
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQ
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SIO_000300: 5.455e1

ClippingRankSum
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SIO_000300: -2.9e-2

DP
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SIO_000300: 8.79141e5

BaseQRankSum
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SIO_000300: 7.9e-2

FS
type: SiteQuality
SIO_000300: 5.22e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Finnish)
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num of homozygotes: 0

African
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East Asian
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European (Non-Finnish)
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Other
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ReadPosRankSum
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VQSLOD
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FS
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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MQ
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DP
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QD
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 3.528581510232887e-4
allele num: 5668
num of homozygotes: 0

Other
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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South Asian
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Latino
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European (Finnish)
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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DP
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MQRankSum
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MQ
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BaseQRankSum
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ClippingRankSum
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FS
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3726
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5662
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 4532
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6832
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.385387887558655e-5
allele num: 45606
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
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SIO_000300: 1.515e1

DP
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SIO_000300: 8.54932e5

InbreedingCoeff
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SIO_000300: -5.9e-3

MQRankSum
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SIO_000300: 2.93e-1

BaseQRankSum
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SIO_000300: -2.017e0

ClippingRankSum
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SIO_000300: -3.26e-1

FS
type: SiteQuality
SIO_000300: 4.296e0

VQSLOD
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SIO_000300: 1.63e0

ReadPosRankSum
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SIO_000300: 1.96e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3772
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12390
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.456452082726478e-4
allele num: 6866
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45796
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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SIO_000300: 1.64e0

DP
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SIO_000300: 8.86686e5

MQRankSum
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SIO_000300: 1.92e0

VQSLOD
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InbreedingCoeff
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SIO_000300: -7.0e-4

MQ
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SIO_000300: 6.0e1

ClippingRankSum
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SIO_000300: 6.09e-1

QD
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SIO_000300: 6.77e0

ReadPosRankSum
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SIO_000300: 4.52e-1

FS
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SIO_000300: 9.425000000000001e0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 590
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 6.528835690968444e-5
allele num: 45950
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12424
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3792
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5730
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 6996
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6394
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.55e0

QD
type: SiteQuality
SIO_000300: 1.046e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 7.88e-1

BaseQRankSum
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SIO_000300: -5.0e-2

ClippingRankSum
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SIO_000300: -8.5e-1

MQRankSum
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SIO_000300: -3.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.7e-3

DP
type: SiteQuality
SIO_000300: 8.85718e5

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5714
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.358247984310307e-5
allele num: 45890
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12420
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3814
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.4e-1

ReadPosRankSum
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MQRankSum
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MQ
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SIO_000300: 4.802e1

BaseQRankSum
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SIO_000300: 4.37e-1

InbreedingCoeff
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SIO_000300: -6.9e-3

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.1692e1

VQSLOD
type: SiteQuality
SIO_000300: 1.7e-1

DP
type: SiteQuality
SIO_000300: 8.89292e5

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 12512
num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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Latino
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East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 9
allele frequency: 1.395781637717122e-3
allele num: 6448
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 46364
num of homozygotes: 0

MQ
type: SiteQuality
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FS
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QD
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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MQRankSum
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ReadPosRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele num: 6456
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Other
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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BaseQRankSum
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VQSLOD
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DP
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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FS
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MQ
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QD
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MQRankSum
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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South Asian
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European (Finnish)
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Other
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East Asian
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FS
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ReadPosRankSum
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MQRankSum
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DP
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InbreedingCoeff
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BaseQRankSum
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Other
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South Asian
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East Asian
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African
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European (Finnish)
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MQ
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FS
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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DP
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ClippingRankSum
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MQRankSum
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QD
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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East Asian
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African
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Latino
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Other
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European (Finnish)
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ClippingRankSum
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FS
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MQ
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BaseQRankSum
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DP
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InbreedingCoeff
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QD
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VQSLOD
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ReadPosRankSum
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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European (Non-Finnish)
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South Asian
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African
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Latino
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VQSLOD
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DP
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FS
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MQRankSum
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ReadPosRankSum
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MQ
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InbreedingCoeff
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ClippingRankSum
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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European (Non-Finnish)
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East Asian
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South Asian
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VQSLOD
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MQ
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ClippingRankSum
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MQRankSum
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DP
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QD
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InbreedingCoeff
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FS
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ReadPosRankSum
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European (Non-Finnish)
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East Asian
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BaseQRankSum
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DP
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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MQ
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FS
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InbreedingCoeff
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QD
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GenotypeQuality
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African
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Latino
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European (Finnish)
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South Asian
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East Asian
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European (Non-Finnish)
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ClippingRankSum
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VQSLOD
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FS
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QD
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InbreedingCoeff
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MQ
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DP
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GenotypeQuality
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Latino
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South Asian
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European (Non-Finnish)
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African
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European (Finnish)
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DP
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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FS
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MQ
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QD
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African
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European (Non-Finnish)
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East Asian
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South Asian
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European (Finnish)
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VQSLOD
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ClippingRankSum
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MQRankSum
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QD
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MQ
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FS
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ReadPosRankSum
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DP
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InbreedingCoeff
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South Asian
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European (Non-Finnish)
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East Asian
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European (Finnish)
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African
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MQ
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MQRankSum
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FS
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VQSLOD
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DP
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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East Asian
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MQ
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QD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 1.616031027795734e-4
allele num: 6188
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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African
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allele frequency: 0.0e0
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Latino
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FS
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MQRankSum
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DP
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BaseQRankSum
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MQ
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VQSLOD
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QD
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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Latino
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allele frequency: 1.321702352630188e-4
allele num: 7566
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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FS
type: SiteQuality
SIO_000300: 0.0e0

QD
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VQSLOD
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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MQ
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InbreedingCoeff
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SIO_000300: -2.9e-3

DP
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

Other
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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European (Non-Finnish)
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allele num: 47922
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East Asian
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ReadPosRankSum
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MQ
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VQSLOD
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FS
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QD
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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DP
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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European (Non-Finnish)
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African
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Latino
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East Asian
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Other
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BaseQRankSum
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QD
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FS
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InbreedingCoeff
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MQ
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ClippingRankSum
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MQRankSum
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VQSLOD
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DP
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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African
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Other
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European (Non-Finnish)
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South Asian
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InbreedingCoeff
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VQSLOD
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FS
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QD
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ReadPosRankSum
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MQ
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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