12-56420714-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56420714
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56420714
    reference: chr 12
allele count: 1
allele frequency: 8.54481756814492e-6
allele num: 117030
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.569C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551701
  gene symbol: IKZF4
  hgvsc: ENST00000551701.1:n.408C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.436C>T
  hgvsp: ENSP00000262032.5:p.Pro146Ser
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.436C>T
  hgvsp: ENSP00000448419.1:p.Pro146Ser
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.130C>T
  hgvsp: ENSP00000412101.2:p.Pro44Ser
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*195C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.301C>T
  hgvsp: ENSP00000450020.1:p.Pro101Ser
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.373C>T
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22060
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2491
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2429
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5078
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25796
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 986
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1520
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39372
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 907
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro146Ser
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
reference allele: C
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

12-56420745-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56420745
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56420745
    reference: chr 12
allele count: 2
allele frequency: 1.758984010835342e-5
allele num: 113702
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.467A>G
  hgvsp: ENSP00000448419.1:p.Asn156Ser
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.332A>G
  hgvsp: ENSP00000450020.1:p.Asn111Ser
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.161A>G
  hgvsp: ENSP00000412101.2:p.Asn54Ser
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*226A>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.600A>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.467A>G
  hgvsp: ENSP00000262032.5:p.Asn156Ser
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551701
  gene symbol: IKZF4
  hgvsc: ENST00000551701.1:n.439A>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.404A>G
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3262
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4826
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3528
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21549
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23148
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1339
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6261
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1310
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asn156Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

12-56420764-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56420764
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56420764
    reference: chr 12
allele count: 1
allele frequency: 9.268527787046306e-6
allele num: 107892
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.423C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551701
  gene symbol: IKZF4
  hgvsc: ENST00000551701.1:n.458C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.619C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.351C>T
  hgvsp: ENST00000547791.1:c.351C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.486C>T
  hgvsp: ENST00000547167.1:c.486C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.180C>T
  hgvsp: ENST00000431367.2:c.180C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.486C>T
  hgvsp: ENST00000262032.5:c.486C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*245C>T
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17199
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6013
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5063
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8622
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19910
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 971
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1548
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11470
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30014
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Asp162Asp
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: C
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

12-56420765-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56420765
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56420765
    reference: chr 12
allele count: 2
allele frequency: 1.856355232137222e-5
allele num: 107738
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.487G>A
  hgvsp: ENSP00000448419.1:p.Val163Ile
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.181G>A
  hgvsp: ENSP00000412101.2:p.Val61Ile
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.620G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*246G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.487G>A
  hgvsp: ENSP00000262032.5:p.Val163Ile
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.352G>A
  hgvsp: ENSP00000450020.1:p.Val118Ile
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.424G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551701
  gene symbol: IKZF4
  hgvsc: ENST00000551701.1:n.459G>A
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4984
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8784
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2739
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20029
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16982
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2428
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30636
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1842
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val163Ile
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

12-56420770-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56420770
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56420770
    reference: chr 12
allele count: 19
allele frequency: 1.79323102478434e-4
allele num: 105954
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.186C>T
  hgvsp: ENST00000431367.2:c.186C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.429C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551701
  gene symbol: IKZF4
  hgvsc: ENST00000551701.1:n.464C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.492C>T
  hgvsp: ENST00000547167.1:c.492C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.357C>T
  hgvsp: ENST00000547791.1:c.357C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.625C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.492C>T
  hgvsp: ENST00000262032.5:c.492C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*251C>T
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6846
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9663
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19754
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15622
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29218
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 9.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12988
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2419
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 873
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Cys164Cys
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP

12-56420771-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56420771
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56420771
    reference: chr 12
allele count: 1
allele frequency: 9.488926422864517e-6
allele num: 105386
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.187G>A
  hgvsp: ENSP00000412101.2:p.Gly63Ser
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.358G>A
  hgvsp: ENSP00000450020.1:p.Gly120Ser
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.493G>A
  hgvsp: ENSP00000262032.5:p.Gly165Ser
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551701
  gene symbol: IKZF4
  hgvsc: ENST00000551701.1:n.465G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.493G>A
  hgvsp: ENSP00000448419.1:p.Gly165Ser
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.626G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*252G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.430G>A
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19540
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10073
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5254
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7188
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15154
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13568
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1503
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1947
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly165Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum

12-56420773-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56420773
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56420773
    reference: chr 12
allele count: 8
allele frequency: 7.627474161931276e-5
allele num: 104884
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.432C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.495C>T
  hgvsp: ENST00000547167.1:c.495C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.189C>T
  hgvsp: ENST00000431367.2:c.189C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.495C>T
  hgvsp: ENST00000262032.5:c.495C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*254C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.360C>T
  hgvsp: ENST00000547791.1:c.360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.628C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551701
  gene symbol: IKZF4
  hgvsc: ENST00000551701.1:n.467C>T
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10352
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5036
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7443
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19615
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14928
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14020
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1870
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly165Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/12-56420792-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56420792
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56420792
    reference: chr 12
allele count: 1
allele frequency: 1.023960679909891e-5
allele num: 97660
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.647A>C
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.379A>C
  hgvsp: ENSP00000450020.1:p.Asn127His
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.451A>C
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*273A>C
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.208A>C
  hgvsp: ENSP00000412101.2:p.Asn70His
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551701
  gene symbol: IKZF4
  hgvsc: ENST00000551701.1:n.486A>C
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.514A>C
  hgvsp: ENSP00000262032.5:p.Asn172His
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.514A>C
  hgvsp: ENSP00000448419.1:p.Asn172His
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11030
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13936
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16595
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10556
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5376
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2553
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3310
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1016
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asn172His
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

12-56420794-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56420794
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56420794
    reference: chr 12
allele count: 5
allele frequency: 5.179522240868502e-5
allele num: 96534
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.516C>T
  hgvsp: ENST00000547167.1:c.516C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.210C>T
  hgvsp: ENST00000431367.2:c.210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.381C>T
  hgvsp: ENST00000547791.1:c.381C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.453C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.649C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.516C>T
  hgvsp: ENST00000262032.5:c.516C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*275C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551701
  gene symbol: IKZF4
  hgvsc: ENST00000551701.1:n.488C>T
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10818
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14208
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5331
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10651
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16388
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2481
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1148
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3351
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asn172Asn
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP

12-56420795-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56420795
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56420795
    reference: chr 12
allele count: 1
allele frequency: 1.047076562238231e-5
allele num: 95504
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.517G>A
  hgvsp: ENSP00000448419.1:p.Val173Met
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.517G>A
  hgvsp: ENSP00000262032.5:p.Val173Met
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.211G>A
  hgvsp: ENSP00000412101.2:p.Val71Met
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551701
  gene symbol: IKZF4
  hgvsc: ENST00000551701.1:n.489G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.454G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.650G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*276G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.382G>A
  hgvsp: ENSP00000450020.1:p.Val128Met
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11193
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14556
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16088
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10065
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5396
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2336
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1526
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1298
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val173Met
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

12-56420796-T-TGACATGCCTGTAATCCCAGCTACTCAGGAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56420796
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56420826
    reference: chr 12
allele count: 1
allele frequency: 1.045543891932583e-5
allele num: 95644
alternate allele: TGACATGCCTGTAATCCCAGCTACTCAGGAG
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: stop_gained
  consequence: inframe_insertion
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: inframe_insertion
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551701
  gene symbol: IKZF4
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: inframe_insertion
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: inframe_insertion
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: stop gained
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 5222
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14549
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11270
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9984
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16308
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1278
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3428
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 834
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2358
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19840
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1417
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

12-56420800-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56420800
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56420800
    reference: chr 12
allele count: 3
allele frequency: 3.189385724309498e-5
allele num: 94062
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*281C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.459C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.655C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.387C>T
  hgvsp: ENST00000547791.1:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.216C>T
  hgvsp: ENST00000431367.2:c.216C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.522C>T
  hgvsp: ENST00000547167.1:c.522C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.522C>T
  hgvsp: ENST00000262032.5:c.522C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551701
  gene symbol: IKZF4
  hgvsc: ENST00000551701.1:n.494C>T
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4874
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15983
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14978
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9643
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11712
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1220
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1203
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20534
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21239
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu174Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum

12-56420801-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56420801
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56420801
    reference: chr 12
allele count: 1
allele frequency: 1.065984436627225e-5
allele num: 93810
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.388A>G
  hgvsp: ENSP00000450020.1:p.Met130Val
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.460A>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.523A>G
  hgvsp: ENSP00000262032.5:p.Met175Val
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.217A>G
  hgvsp: ENSP00000412101.2:p.Met73Val
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*282A>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.523A>G
  hgvsp: ENSP00000448419.1:p.Met175Val
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551701
  gene symbol: IKZF4
  hgvsc: ENST00000551701.1:n.495A>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.656A>G
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9466
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11896
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15758
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4808
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15213
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 761
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20859
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1200
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1152
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1554
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Met175Val
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

12-56420814-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56420814
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56420814
    reference: chr 12
allele count: 2
allele frequency: 2.287230392717458e-5
allele num: 87442
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.536G>A
  hgvsp: ENSP00000448419.1:p.Arg179His
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*295G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.536G>A
  hgvsp: ENSP00000262032.5:p.Arg179His
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.473G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551701
  gene symbol: IKZF4
  hgvsc: ENST00000551701.1:n.508G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.230G>A
  hgvsp: ENSP00000412101.2:p.Arg77His
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.669G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.401G>A
  hgvsp: ENSP00000450020.1:p.Arg134His
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16856
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7321
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4131
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13550
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2620
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14291
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3615
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1716
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22884
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1072
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg179His
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

12-56420828-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56420828
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56420828
    reference: chr 12
allele count: 3
allele frequency: 3.612368750602061e-5
allele num: 83048
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.547+3A>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551701
  gene symbol: IKZF4
  hgvsc: ENST00000551701.1:n.519+3A>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.412+3A>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.484+3A>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.547+3A>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.680+3A>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.241+3A>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*306+3A>G
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5658
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20122
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4038
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10746
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3878
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14462
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4168
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1387
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
hgvs: c.547+3A>G
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum

12-56420834-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56420834
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56420834
    reference: chr 12
allele count: 4
allele frequency: 4.934494584392194e-5
allele num: 81062
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.484+9G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.547+9G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.680+9G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.241+9G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551701
  gene symbol: IKZF4
  hgvsc: ENST00000551701.1:n.519+9G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.412+9G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*306+9G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.547+9G>A
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8442
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4685
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21737
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4667
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14572
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4739
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5165
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5130
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4781
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum

12-56420847-TGG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56420847
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56420845
    reference: chr 12
allele count: 1
allele frequency: 1.297353399065906e-5
allele num: 77080
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551701
  gene symbol: IKZF4
  hgvsc: ENST00000551701.1:n.519+24_519+25delGG
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.547+24_547+25delGG
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.241+24_241+25delGG
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*306+24_*306+25delGG
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.484+24_484+25delGG
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.412+24_412+25delGG
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.680+24_680+25delGG
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.547+24_547+25delGG
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6310
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5825
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5367
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15154
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2973
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23150
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1116
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5769
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5880
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25521
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: TGG
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum

12-56420848-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56420848
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56420848
    reference: chr 12
allele count: 1
allele frequency: 1.30079608720537e-5
allele num: 76876
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.680+23G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.547+23G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.412+23G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.547+23G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.241+23G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551701
  gene symbol: IKZF4
  hgvsc: ENST00000551701.1:n.519+23G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.484+23G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*306+23G>A
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2977
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23139
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6244
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5838
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5380
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1119
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25726
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6930
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1188
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: G
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

12-56420849-G-GTCCC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56420849
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56420853
    reference: chr 12
allele count: 1
allele frequency: 1.305619385836641e-5
allele num: 76592
alternate allele: GTCCC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.680+24_680+25insTCCC
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.412+24_412+25insTCCC
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.547+24_547+25insTCCC
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.241+24_241+25insTCCC
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.484+24_484+25insTCCC
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551701
  gene symbol: IKZF4
  hgvsc: ENST00000551701.1:n.519+24_519+25insTCCC
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.547+24_547+25insTCCC
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*306+24_*306+25insTCCC
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5152
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15257
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5888
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6404
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23177
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2887
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25696
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1237
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 792
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

12-56420872-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56420872
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56420872
    reference: chr 12
allele count: 2
allele frequency: 2.97441998810232e-5
allele num: 67240
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.484+47G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551701
  gene symbol: IKZF4
  hgvsc: ENST00000551701.1:n.519+47G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.547+47G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.680+47G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.412+47G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*306+47G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.241+47G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.547+47G>A
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8857
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20658
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6365
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3259
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18305
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1422
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1425
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4191
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1526
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 18807
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD

12-56421520-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56421520
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56421520
    reference: chr 12
allele count: 1
allele frequency: 1.223600812470939e-5
allele num: 81726
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551701
  gene symbol: IKZF4
  hgvsc: ENST00000551701.1:n.520-44G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.548-44G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.485-44G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.242-44G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*307-44G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.681-44G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.413-44G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.548-44G>A
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5218
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5442
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17002
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7141
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19751
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2270
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1959
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 825
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2050
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5699
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2432
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8809
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2461
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5608
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

12-56421521-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56421521
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56421521
    reference: chr 12
allele count: 1
allele frequency: 1.221269631909333e-5
allele num: 81882
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*307-43T>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.681-43T>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.548-43T>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.413-43T>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.242-43T>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.548-43T>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551701
  gene symbol: IKZF4
  hgvsc: ENST00000551701.1:n.520-43T>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.485-43T>A
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5233
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16995
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19783
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6856
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1962
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2214
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5738
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5698
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1773
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2020
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2185
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

12-56421523-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56421523
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56421523
    reference: chr 12
allele count: 1
allele frequency: 1.221896383186706e-5
allele num: 81840
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551701
  gene symbol: IKZF4
  hgvsc: ENST00000551701.1:n.520-41C>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*307-41C>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.485-41C>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.413-41C>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.548-41C>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.681-41C>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.548-41C>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.242-41C>G
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6323
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17038
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19698
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6396
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1962
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5281
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1016
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9701
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1714
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5589
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8286
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5615
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

12-56421526-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56421526
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56421526
    reference: chr 12
allele count: 4
allele frequency: 4.868193656743665e-5
allele num: 82166
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551701
  gene symbol: IKZF4
  hgvsc: ENST00000551701.1:n.520-38C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.548-38C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*307-38C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.413-38C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.548-38C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.242-38C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.681-38C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.485-38C>T
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19412
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1833
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5356
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17137
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7403
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5679
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1761
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17038
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1363
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/12-56421527-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56421527
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56421527
    reference: chr 12
allele count: 6
allele frequency: 7.261988332405412e-5
allele num: 82622
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.548-37A>C
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.681-37A>C
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.485-37A>C
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551701
  gene symbol: IKZF4
  hgvsc: ENST00000551701.1:n.520-37A>C
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*307-37A>C
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.413-37A>C
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.548-37A>C
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.242-37A>C
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17178
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19245
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7959
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5322
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5381
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17435
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1538
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1020
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 991
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8120
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5610
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1491
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5267
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

12-56421539-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56421539
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56421539
    reference: chr 12
allele count: 1
allele frequency: 1.176359872012046e-5
allele num: 85008
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.548-25C>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*307-25C>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.548-25C>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.242-25C>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.681-25C>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551701
  gene symbol: IKZF4
  hgvsc: ENST00000551701.1:n.520-25C>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.485-25C>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.413-25C>G
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16781
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5843
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16311
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3363
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13528
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2012
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 888
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3659
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18006
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

12-56421542-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56421542
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56421542
    reference: chr 12
allele count: 1
allele frequency: 1.165908825929812e-5
allele num: 85770
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551701
  gene symbol: IKZF4
  hgvsc: ENST00000551701.1:n.520-22G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.548-22G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.485-22G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.242-22G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.413-22G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*307-22G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.681-22G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.548-22G>A
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5982
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16507
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15295
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15006
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3174
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2039
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6353
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 863
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4963
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3314
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

12-56421551-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56421551
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56421551
    reference: chr 12
allele count: 1
allele frequency: 1.125365743866757e-5
allele num: 88860
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.242-13C>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.413-13C>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.681-13C>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.485-13C>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.548-13C>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.548-13C>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551701
  gene symbol: IKZF4
  hgvsc: ENST00000551701.1:n.520-13C>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*307-13C>G
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12219
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19712
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15258
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2068
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6468
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22543
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1018
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
reference allele: C
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

12-56421552-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56421552
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56421552
    reference: chr 12
allele count: 1
allele frequency: 1.117143687021025e-5
allele num: 89514
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.681-12T>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.548-12T>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.413-12T>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.548-12T>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.242-12T>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*307-12T>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.485-12T>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551701
  gene symbol: IKZF4
  hgvsc: ENST00000551701.1:n.520-12T>A
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2056
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20394
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11852
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6490
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2430
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15096
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1018
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2380
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 685
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16449
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP

12-56421558-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56421558
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56421558
    reference: chr 12
allele count: 1
allele frequency: 1.085281413470513e-5
allele num: 92142
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551701
  gene symbol: IKZF4
  hgvsc: ENST00000551701.1:n.520-6T>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.681-6T>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*307-6T>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.548-6T>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.242-6T>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.548-6T>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.485-6T>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.413-6T>G
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13904
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2296
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10066
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23204
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6871
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2529
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26143
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15253
  bin: 2.25e1
  variant carriers: 0
hgvs: c.548-6T>G
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

12-56421561-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56421561
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56421561
    reference: chr 12
allele count: 1
allele frequency: 1.070068056328382e-5
allele num: 93452
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.242-3C>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.681-3C>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551701
  gene symbol: IKZF4
  hgvsc: ENST00000551701.1:n.520-3C>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.548-3C>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*307-3C>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.485-3C>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.413-3C>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.548-3C>G
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7184
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24447
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2397
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9179
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27558
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 936
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14448
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
hgvs: c.548-3C>G
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

12-56421604-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56421604
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56421604
    reference: chr 12
allele count: 3
allele frequency: 2.78174433915027e-5
allele num: 107846
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.588C>T
  hgvsp: ENST00000547167.1:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.721C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.525C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.453C>T
  hgvsp: ENST00000547791.1:c.453C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*347C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.282C>T
  hgvsp: ENST00000431367.2:c.282C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551701
  gene symbol: IKZF4
  hgvsc: ENST00000551701.1:n.560C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.588C>T
  hgvsp: ENST00000262032.5:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6289
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10264
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4664
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30804
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4514
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1758
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1995
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 869
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Phe196Phe
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

12-56421610-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56421610
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56421610
    reference: chr 12
allele count: 4
allele frequency: 3.672554996511073e-5
allele num: 108916
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.459G>A
  hgvsp: ENST00000547791.1:c.459G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.288G>A
  hgvsp: ENST00000431367.2:c.288G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551701
  gene symbol: IKZF4
  hgvsc: ENST00000551701.1:n.566G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.531G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.594G>A
  hgvsp: ENST00000262032.5:c.594G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.594G>A
  hgvsp: ENST00000547167.1:c.594G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*353G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.727G>A
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10614
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4330
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31464
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5789
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4413
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1416
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 871
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1763
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 898
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gln198Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP

12-56421619-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56421619
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56421619
    reference: chr 12
allele count: 4
allele frequency: 3.633720930232558e-5
allele num: 110080
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*362C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.297C>T
  hgvsp: ENST00000431367.2:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.603C>T
  hgvsp: ENST00000262032.5:c.603C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551701
  gene symbol: IKZF4
  hgvsc: ENST00000551701.1:n.575C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.468C>T
  hgvsp: ENST00000547791.1:c.468C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.603C>T
  hgvsp: ENST00000547167.1:c.603C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.540C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.736C>T
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5235
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11069
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4143
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4097
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32129
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36319
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1439
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1486
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1596
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1004
  bin: 9.75e1
  variant carriers: 4
hgvs: p.Asn201Asn
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

12-56421632-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56421632
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56421632
    reference: chr 12
allele count: 1
allele frequency: 8.978111364493366e-6
allele num: 111382
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551701
  gene symbol: IKZF4
  hgvsc: ENST00000551701.1:n.588A>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.553A>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.616A>T
  hgvsp: ENSP00000448419.1:p.Ile206Phe
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.481A>T
  hgvsp: ENSP00000450020.1:p.Ile161Phe
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*375A>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.616A>T
  hgvsp: ENSP00000262032.5:p.Ile206Phe
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.749A>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.310A>T
  hgvsp: ENSP00000412101.2:p.Ile104Phe
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4611
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32662
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3967
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3818
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1984
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11756
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1368
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37996
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1341
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 727
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1373
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ile206Phe
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

12-56421665-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56421665
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56421665
    reference: chr 12
allele count: 1
allele frequency: 8.966840623374759e-6
allele num: 111522
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.586T>C
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.514T>C
  hgvsp: ENSP00000450020.1:p.Cys172Arg
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*408T>C
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551701
  gene symbol: IKZF4
  hgvsc: ENST00000551701.1:n.621T>C
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.649T>C
  hgvsp: ENSP00000262032.5:p.Cys217Arg
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.782T>C
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.343T>C
  hgvsp: ENSP00000412101.2:p.Cys115Arg
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.649T>C
  hgvsp: ENSP00000448419.1:p.Cys217Arg
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11557
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4279
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4854
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2692
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33300
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 868
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 794
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39338
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1122
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3359
  bin: 6.75e1
  variant carriers: 1
hgvs: p.Cys217Arg
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

12-56421670-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56421670
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56421670
    reference: chr 12
allele count: 2
allele frequency: 1.802223944347325e-5
allele num: 110974
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*413C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.654C>T
  hgvsp: ENST00000262032.5:c.654C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.787C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.654C>T
  hgvsp: ENST00000547167.1:c.654C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.519C>T
  hgvsp: ENST00000547791.1:c.519C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.348C>T
  hgvsp: ENST00000431367.2:c.348C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551701
  gene symbol: IKZF4
  hgvsc: ENST00000551701.1:n.626C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.591C>T
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4317
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4807
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33039
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11778
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2542
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 960
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39378
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1070
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro218Pro
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

12-56421677-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56421677
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56421677
    reference: chr 12
allele count: 1
allele frequency: 9.069801189957916e-6
allele num: 110256
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551701
  gene symbol: IKZF4
  hgvsc: ENST00000551701.1:n.633A>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.598A>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.661A>G
  hgvsp: ENSP00000448419.1:p.Asn221Asp
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*420A>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.526A>G
  hgvsp: ENSP00000450020.1:p.Asn176Asp
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.355A>G
  hgvsp: ENSP00000412101.2:p.Asn119Asp
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.661A>G
  hgvsp: ENSP00000262032.5:p.Asn221Asp
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.794A>G
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2283
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11795
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4456
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4749
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32941
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1006
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 973
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asn221Asp
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: A
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/12-56421678-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56421678
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56421678
    reference: chr 12
allele count: 1
allele frequency: 9.089917463549432e-6
allele num: 110012
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*421A>C
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.356A>C
  hgvsp: ENSP00000412101.2:p.Asn119Thr
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.662A>C
  hgvsp: ENSP00000448419.1:p.Asn221Thr
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551701
  gene symbol: IKZF4
  hgvsc: ENST00000551701.1:n.634A>C
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.662A>C
  hgvsp: ENSP00000262032.5:p.Asn221Thr
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.527A>C
  hgvsp: ENSP00000450020.1:p.Asn176Thr
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.795A>C
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.599A>C
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11779
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4724
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32831
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4473
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2317
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 760
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 936
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3322
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1060
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asn221Thr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum

12-56421682-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56421682
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56421682
    reference: chr 12
allele count: 1
allele frequency: 9.150302875025163e-6
allele num: 109286
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.799T>C
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.360T>C
  hgvsp: ENST00000431367.2:c.360T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.666T>C
  hgvsp: ENST00000547167.1:c.666T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*425T>C
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.603T>C
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.531T>C
  hgvsp: ENST00000547791.1:c.531T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.666T>C
  hgvsp: ENST00000262032.5:c.666T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551701
  gene symbol: IKZF4
  hgvsc: ENST00000551701.1:n.638T>C
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11861
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4500
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32677
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4580
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1012
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 936
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3332
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Tyr222Tyr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

12-56421685-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56421685
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56421685
    reference: chr 12
allele count: 34
allele frequency: 3.159205366932411e-4
allele num: 107622
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*428C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.534C>T
  hgvsp: ENST00000547791.1:c.534C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.669C>T
  hgvsp: ENST00000547167.1:c.669C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.363C>T
  hgvsp: ENST00000431367.2:c.363C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.606C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.802C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.669C>T
  hgvsp: ENST00000262032.5:c.669C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1909
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12023
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4586
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4274
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 32117
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 38134
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1975
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 992
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6777
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala223Ala
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

12-56421740-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56421740
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56421740
    reference: chr 12
allele count: 1
allele frequency: 1.03913377808259e-5
allele num: 96234
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.409+9C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.715+9C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.652+9C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.580+9C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.848+9C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*474+9C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.715+9C>T
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19347
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6980
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14089
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3436
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8327
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24319
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3494
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3242
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4000
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14940
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ

12-56421757-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56421757
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56421757
    reference: chr 12
allele count: 1
allele frequency: 1.085163642677316e-5
allele num: 92152
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.409+26G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.580+26G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.715+26G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.848+26G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*474+26G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.715+26G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.652+26G>A
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5107
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9941
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21239
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7402
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4374
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8014
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5315
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18437
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3433
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4017
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 858
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1327
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum

12-56421763-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56421763
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56421763
    reference: chr 12
allele count: 0
allele frequency: 0.0e0
allele num: 89678
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.715+32A>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.409+32A>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.848+32A>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.715+32A>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.652+32A>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*474+32A>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.580+32A>G
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4476
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10632
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3641
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21484
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6901
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8886
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4143
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1114
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1335
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1163
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5819
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum

12-56421772-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56421772
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56421772
    reference: chr 12
allele count: 0
allele frequency: 0.0e0
allele num: 86288
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.715+41C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.715+41C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*474+41C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.580+41C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.652+41C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.848+41C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.409+41C>T
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 11939
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4483
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10519
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5892
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20552
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2625
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8090
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1773
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17031
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1740
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5940
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4312
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 969
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS

12-56426295-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56426295
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56426295
    reference: chr 12
allele count: 1
allele frequency: 1.38561729250381e-5
allele num: 72170
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.410-50G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.716-50G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.581-50G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.716-50G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.653-50G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000547556
  gene symbol: IKZF4
  hgvsc: ENST00000547556.1:n.232G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.849-50G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257449
  ensembl transcript: ENST00000551846
  gene symbol: RP11-603J24.4
  hgvsc: ENST00000551846.1:n.183-2745C>T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*475-50G>A
  variant of: http://identifiers.org/hgnc/13179
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8023
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3748
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19128
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3138
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20093
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2598
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2177
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1706
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2437
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5712
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

12-56426296-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56426296
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56426296
    reference: chr 12
allele count: 1
allele frequency: 1.381597126277977e-5
allele num: 72380
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.716-49G>C
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000547556
  gene symbol: IKZF4
  hgvsc: ENST00000547556.1:n.233G>C
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.716-49G>C
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257449
  ensembl transcript: ENST00000551846
  gene symbol: RP11-603J24.4
  hgvsc: ENST00000551846.1:n.183-2746C>G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*475-49G>C
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.653-49G>C
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.410-49G>C
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.849-49G>C
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.581-49G>C
  variant of: http://identifiers.org/hgnc/13179
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8004
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20111
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3140
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19126
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3751
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5710
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8209
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5972
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

12-56426303-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56426303
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56426303
    reference: chr 12
allele count: 2
allele frequency: 2.753683051080821e-5
allele num: 72630
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.410-42C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.716-42C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257449
  ensembl transcript: ENST00000551846
  gene symbol: RP11-603J24.4
  hgvsc: ENST00000551846.1:n.183-2753G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.653-42C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.716-42C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*475-42C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000547556
  gene symbol: IKZF4
  hgvsc: ENST00000547556.1:n.240C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.849-42C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.581-42C>T
  variant of: http://identifiers.org/hgnc/13179
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20023
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19172
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4614
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6700
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3399
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3972
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 679
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1180
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff

12-56426304-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56426304
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56426304
    reference: chr 12
allele count: 52
allele frequency: 7.098976109215017e-4
allele num: 73250
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.716-41G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.849-41G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.581-41G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*475-41G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.410-41G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.653-41G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257449
  ensembl transcript: ENST00000551846
  gene symbol: RP11-603J24.4
  hgvsc: ENST00000551846.1:n.183-2754C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000547556
  gene symbol: IKZF4
  hgvsc: ENST00000547556.1:n.241G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.716-41G>A
  variant of: http://identifiers.org/hgnc/13179
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6142
  bin: 1.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3262
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20055
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5280
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19112
  bin: 1.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 17704
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1895
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff

12-56426310-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56426310
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56426310
    reference: chr 12
allele count: 1
allele frequency: 1.341057826413475e-5
allele num: 74568
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257449
  ensembl transcript: ENST00000551846
  gene symbol: RP11-603J24.4
  hgvsc: ENST00000551846.1:n.183-2760A>G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.716-35T>C
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*475-35T>C
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.653-35T>C
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.716-35T>C
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.410-35T>C
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.581-35T>C
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000547556
  gene symbol: IKZF4
  hgvsc: ENST00000547556.1:n.247T>C
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.849-35T>C
  variant of: http://identifiers.org/hgnc/13179
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2611
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20301
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7731
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4472
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18500
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2159
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1272
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2199
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1442
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD

12-56426316-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56426316
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56426316
    reference: chr 12
allele count: 1
allele frequency: 1.316898440792246e-5
allele num: 75936
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.716-29T>C
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.716-29T>C
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.653-29T>C
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257449
  ensembl transcript: ENST00000551846
  gene symbol: RP11-603J24.4
  hgvsc: ENST00000551846.1:n.183-2766A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000547556
  gene symbol: IKZF4
  hgvsc: ENST00000547556.1:n.253T>C
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*475-29T>C
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.849-29T>C
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.410-29T>C
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.581-29T>C
  variant of: http://identifiers.org/hgnc/13179
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10270
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20322
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1962
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3482
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2562
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17098
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2692
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 982
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1173
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP

12-56426332-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56426332
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56426332
    reference: chr 12
allele count: 1
allele frequency: 1.213651148113986e-5
allele num: 82396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.716-13C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257449
  ensembl transcript: ENST00000551846
  gene symbol: RP11-603J24.4
  hgvsc: ENST00000551846.1:n.183-2782G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000547556
  gene symbol: IKZF4
  hgvsc: ENST00000547556.1:n.269C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.716-13C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.849-13C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.653-13C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.410-13C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.581-13C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*475-13C>T
  variant of: http://identifiers.org/hgnc/13179
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18247
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12196
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17731
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2485
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3819
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2558
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5230
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

12-56426338-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56426338
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56426338
    reference: chr 12
allele count: 242
allele frequency: 2.79484455120802e-3
allele num: 86588
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.849-7T>C
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.716-7T>C
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.410-7T>C
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.653-7T>C
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257449
  ensembl transcript: ENST00000551846
  gene symbol: RP11-603J24.4
  hgvsc: ENST00000551846.1:n.183-2788A>G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.581-7T>C
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.716-7T>C
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*475-7T>C
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000547556
  gene symbol: IKZF4
  hgvsc: ENST00000547556.1:n.275T>C
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 9998
  bin: 1.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 4437
  bin: 2.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16469
  bin: 7.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 3.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 1.75e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 21311
  bin: 2.25e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 934
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2852
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 5.75e1
  variant carriers: 1
hgvs: c.716-7T>C
num of homozygotes: 1
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/12-56426339-CCA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56426339
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56426337
    reference: chr 12
allele count: 1
allele frequency: 1.145003206008977e-5
allele num: 87336
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257449
  ensembl transcript: ENST00000551846
  gene symbol: RP11-603J24.4
  hgvsc: ENST00000551846.1:n.183-2791_183-2790delTG
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.716-3_716-2delCA
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.716-3_716-2delCA
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.410-3_410-2delCA
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.849-3_849-2delCA
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.581-3_581-2delCA
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.653-3_653-2delCA
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000547556
  gene symbol: IKZF4
  hgvsc: ENST00000547556.1:n.279_280delCA
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*475-3_*475-2delCA
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22013
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16096
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9627
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4574
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2094
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2768
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1979
  bin: 3.75e1
  variant carriers: 0
hgvs: c.716-3_716-2delCA
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: CCA
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum

12-56426346-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56426346
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56426346
    reference: chr 12
allele count: 1
allele frequency: 1.073352939913702e-5
allele num: 93166
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.654C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.717C>T
  hgvsp: ENST00000547167.1:c.717C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.411C>T
  hgvsp: ENST00000431367.2:c.411C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.850C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000547556
  gene symbol: IKZF4
  hgvsc: ENST00000547556.1:n.283C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.582C>T
  hgvsp: ENST00000547791.1:c.582C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257449
  ensembl transcript: ENST00000551846
  gene symbol: RP11-603J24.4
  hgvsc: ENST00000551846.1:n.183-2796G>A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*476C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.717C>T
  hgvsp: ENST00000262032.5:c.717C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26567
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13413
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5266
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2345
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7323
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14217
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
hgvs: c.717C>T
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

12-56426348-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56426348
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56426348
    reference: chr 12
allele count: 0
allele frequency: 0.0e0
allele num: 94790
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*478C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.413C>T
  hgvsp: ENSP00000412101.2:p.Ser138Phe
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.719C>T
  hgvsp: ENSP00000448419.1:p.Ser240Phe
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.719C>T
  hgvsp: ENSP00000262032.5:p.Ser240Phe
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.584C>T
  hgvsp: ENSP00000450020.1:p.Ser195Phe
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.852C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.656C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000547556
  gene symbol: IKZF4
  hgvsc: ENST00000547556.1:n.285C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257449
  ensembl transcript: ENST00000551846
  gene symbol: RP11-603J24.4
  hgvsc: ENST00000551846.1:n.183-2798G>A
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2400
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27723
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6728
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5505
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1744
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12627
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2790
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1093
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser240Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

12-56426364-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56426364
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56426364
    reference: chr 12
allele count: 1
allele frequency: 9.418501704748809e-6
allele num: 106174
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.868C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.735C>T
  hgvsp: ENST00000547167.1:c.735C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.429C>T
  hgvsp: ENST00000431367.2:c.429C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.735C>T
  hgvsp: ENST00000262032.5:c.735C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*494C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257449
  ensembl transcript: ENST00000551846
  gene symbol: RP11-603J24.4
  hgvsc: ENST00000551846.1:n.183-2814G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.600C>T
  hgvsp: ENST00000547791.1:c.600C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.672C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000547556
  gene symbol: IKZF4
  hgvsc: ENST00000547556.1:n.301C>T
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8167
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3391
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7065
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32686
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3702
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1502
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7714
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly245Gly
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

12-56426378-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56426378
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56426378
    reference: chr 12
allele count: 1
allele frequency: 8.819119851838787e-6
allele num: 113390
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257449
  ensembl transcript: ENST00000551846
  gene symbol: RP11-603J24.4
  hgvsc: ENST00000551846.1:n.183-2828C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.443G>A
  hgvsp: ENSP00000412101.2:p.Cys148Tyr
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.749G>A
  hgvsp: ENSP00000448419.1:p.Cys250Tyr
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000547556
  gene symbol: IKZF4
  hgvsc: ENST00000547556.1:n.315G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.749G>A
  hgvsp: ENSP00000262032.5:p.Cys250Tyr
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*508G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.882G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.614G>A
  hgvsp: ENSP00000450020.1:p.Cys205Tyr
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000548601
  gene symbol: IKZF4
  hgvsc: ENST00000548601.1:n.686G>A
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9997
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4235
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35875
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3602
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34816
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1821
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Cys250Tyr
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

12-56426405-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56426405
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56426405
    reference: chr 12
allele count: 1
allele frequency: 8.339588024351597e-6
allele num: 119910
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.776A>T
  hgvsp: ENSP00000448419.1:p.Gln259Leu
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.470A>T
  hgvsp: ENSP00000412101.2:p.Gln157Leu
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*535A>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.641A>T
  hgvsp: ENSP00000450020.1:p.Gln214Leu
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257449
  ensembl transcript: ENST00000551846
  gene symbol: RP11-603J24.4
  hgvsc: ENST00000551846.1:n.183-2855T>A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.776A>T
  hgvsp: ENSP00000262032.5:p.Gln259Leu
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000547556
  gene symbol: IKZF4
  hgvsc: ENST00000547556.1:n.342A>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.909A>T
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12233
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37285
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5934
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38013
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7040
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1006
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gln259Leu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP

12-56426408-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56426408
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56426408
    reference: chr 12
allele count: 1
allele frequency: 8.325840077263796e-6
allele num: 120108
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.473A>G
  hgvsp: ENSP00000412101.2:p.Gln158Arg
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.779A>G
  hgvsp: ENSP00000262032.5:p.Gln260Arg
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.644A>G
  hgvsp: ENSP00000450020.1:p.Gln215Arg
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.779A>G
  hgvsp: ENSP00000448419.1:p.Gln260Arg
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*538A>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.912A>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257449
  ensembl transcript: ENST00000551846
  gene symbol: RP11-603J24.4
  hgvsc: ENST00000551846.1:n.183-2858T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000547556
  gene symbol: IKZF4
  hgvsc: ENST00000547556.1:n.345A>G
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6029
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12332
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37217
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3026
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3701
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gln260Arg
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum

12-56426427-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56426427
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56426427
    reference: chr 12
allele count: 1
allele frequency: 8.286651861182008e-6
allele num: 120676
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.931C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.663C>T
  hgvsp: ENST00000547791.1:c.663C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.798C>T
  hgvsp: ENST00000547167.1:c.798C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.492C>T
  hgvsp: ENST00000431367.2:c.492C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.798C>T
  hgvsp: ENST00000262032.5:c.798C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000547556
  gene symbol: IKZF4
  hgvsc: ENST00000547556.1:n.364C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257449
  ensembl transcript: ENST00000551846
  gene symbol: RP11-603J24.4
  hgvsc: ENST00000551846.1:n.183-2877G>A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*557C>T
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12582
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6354
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36988
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3131
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38106
  bin: 6.25e1
  variant carriers: 0
hgvs: p.His266His
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

12-56426433-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56426433
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56426433
    reference: chr 12
allele count: 2
allele frequency: 1.656726308813784e-5
allele num: 120720
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000547556
  gene symbol: IKZF4
  hgvsc: ENST00000547556.1:n.370G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.804G>A
  hgvsp: ENST00000262032.5:c.804G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*563G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.669G>A
  hgvsp: ENST00000547791.1:c.669G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.498G>A
  hgvsp: ENST00000431367.2:c.498G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257449
  ensembl transcript: ENST00000551846
  gene symbol: RP11-603J24.4
  hgvsc: ENST00000551846.1:n.183-2883C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.804G>A
  hgvsp: ENST00000547167.1:c.804G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.937G>A
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36969
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12604
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6376
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7203
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3150
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1104
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38130
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu268Glu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

12-56426435-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56426435
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56426435
    reference: chr 12
allele count: 1
allele frequency: 8.28349430923941e-6
allele num: 120722
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.671G>A
  hgvsp: ENSP00000450020.1:p.Arg224Gln
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000547556
  gene symbol: IKZF4
  hgvsc: ENST00000547556.1:n.372G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.806G>A
  hgvsp: ENSP00000262032.5:p.Arg269Gln
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*565G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.806G>A
  hgvsp: ENSP00000448419.1:p.Arg269Gln
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.939G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.500G>A
  hgvsp: ENSP00000412101.2:p.Arg167Gln
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257449
  ensembl transcript: ENST00000551846
  gene symbol: RP11-603J24.4
  hgvsc: ENST00000551846.1:n.183-2885C>T
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36935
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12618
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6390
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2602
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7208
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1073
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg269Gln
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD

12-56426439-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56426439
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56426439
    reference: chr 12
allele count: 1
allele frequency: 8.282533792737874e-6
allele num: 120736
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.504C>T
  hgvsp: ENST00000431367.2:c.504C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000547556
  gene symbol: IKZF4
  hgvsc: ENST00000547556.1:n.376C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.943C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.675C>T
  hgvsp: ENST00000547791.1:c.675C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*569C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.810C>T
  hgvsp: ENST00000262032.5:c.810C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257449
  ensembl transcript: ENST00000551846
  gene symbol: RP11-603J24.4
  hgvsc: ENST00000551846.1:n.183-2889G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.810C>T
  hgvsp: ENST00000547167.1:c.810C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6394
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12635
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36923
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1692
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7214
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1076
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3157
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Cys270Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

12-56426452-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56426452
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56426452
    reference: chr 12
allele count: 1
allele frequency: 8.281573498964803e-6
allele num: 120750
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.517C>T
  hgvsp: ENSP00000412101.2:p.Gln173Ter
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.956C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*582C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.823C>T
  hgvsp: ENSP00000262032.5:p.Gln275Ter
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000547556
  gene symbol: IKZF4
  hgvsc: ENST00000547556.1:n.389C>T
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.688C>T
  hgvsp: ENSP00000450020.1:p.Gln230Ter
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257449
  ensembl transcript: ENST00000551846
  gene symbol: RP11-603J24.4
  hgvsc: ENST00000551846.1:n.183-2902G>A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.823C>T
  hgvsp: ENSP00000448419.1:p.Gln275Ter
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36888
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6415
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12656
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3223
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1080
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gln275Ter
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP

12-56426462-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56426462
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56426462
    reference: chr 12
allele count: 3
allele frequency: 2.484389751064147e-5
allele num: 120754
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.698G>A
  hgvsp: ENSP00000450020.1:p.Ser233Asn
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000547556
  gene symbol: IKZF4
  hgvsc: ENST00000547556.1:n.399G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.527G>A
  hgvsp: ENSP00000412101.2:p.Ser176Asn
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257449
  ensembl transcript: ENST00000551846
  gene symbol: RP11-603J24.4
  hgvsc: ENST00000551846.1:n.183-2912C>T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.833G>A
  hgvsp: ENSP00000262032.5:p.Ser278Asn
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.833G>A
  hgvsp: ENSP00000448419.1:p.Ser278Asn
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.966G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*592G>A
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6418
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12670
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36868
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7228
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2609
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3162
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3226
  bin: 9.75e1
  variant carriers: 3
hgvs: p.Ser278Asn
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum

12-56426476-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56426476
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56426476
    reference: chr 12
allele count: 41
allele frequency: 3.395163961576681e-4
allele num: 120760
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257449
  ensembl transcript: ENST00000551846
  gene symbol: RP11-603J24.4
  hgvsc: ENST00000551846.1:n.183-2926C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000547556
  gene symbol: IKZF4
  hgvsc: ENST00000547556.1:n.413G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.712G>A
  hgvsp: ENSP00000450020.1:p.Ala238Thr
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.847G>A
  hgvsp: ENSP00000262032.5:p.Ala283Thr
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*606G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.541G>A
  hgvsp: ENSP00000412101.2:p.Ala181Thr
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.980G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.847G>A
  hgvsp: ENSP00000448419.1:p.Ala283Thr
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 12663
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6421
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36840
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2604
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7224
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala283Thr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

http://identifiers.org/exac.variant/12-56426492-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56426492
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56426492
    reference: chr 12
allele count: 3
allele frequency: 2.484266313348791e-5
allele num: 120760
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.863C>A
  hgvsp: ENSP00000262032.5:p.Pro288Gln
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.728C>A
  hgvsp: ENSP00000450020.1:p.Pro243Gln
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*622C>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000547556
  gene symbol: IKZF4
  hgvsc: ENST00000547556.1:n.429C>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257449
  ensembl transcript: ENST00000551846
  gene symbol: RP11-603J24.4
  hgvsc: ENST00000551846.1:n.183-2942G>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.996C>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.863C>A
  hgvsp: ENSP00000448419.1:p.Pro288Gln
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.557C>A
  hgvsp: ENSP00000412101.2:p.Pro186Gln
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6426
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36835
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12654
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38069
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1112
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro288Gln
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP

12-56426509-G-GTAC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56426509
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56426512
    reference: chr 12
allele count: 5
allele frequency: 4.140512429818314e-5
allele num: 120758
alternate allele: GTAC
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*624+20_*624+22dupACT
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000547556
  gene symbol: IKZF4
  hgvsc: ENST00000547556.1:n.431+20_431+22dupACT
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.865+20_865+22dupACT
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257449
  ensembl transcript: ENST00000551846
  gene symbol: RP11-603J24.4
  hgvsc: ENST00000551846.1:n.183-2962_183-2960dupGTA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.559+20_559+22dupACT
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.865+20_865+22dupACT
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.730+20_730+22dupACT
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.998+20_998+22dupACT
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6404
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36827
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12640
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3263
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum

12-56426514-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56426514
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56426514
    reference: chr 12
allele count: 32
allele frequency: 2.650015734468423e-4
allele num: 120754
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000547556
  gene symbol: IKZF4
  hgvsc: ENST00000547556.1:n.431+20A>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.998+20A>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.559+20A>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.865+20A>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.865+20A>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.730+20A>G
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257449
  ensembl transcript: ENST00000551846
  gene symbol: RP11-603J24.4
  hgvsc: ENST00000551846.1:n.183-2964T>C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*624+20A>G
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 36799
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6407
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12627
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 37980
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2608
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1113
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3835
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD

12-56426518-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56426518
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56426518
    reference: chr 12
allele count: 1
allele frequency: 8.281299170213822e-6
allele num: 120754
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257449
  ensembl transcript: ENST00000551846
  gene symbol: RP11-603J24.4
  hgvsc: ENST00000551846.1:n.183-2968C>T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000449857
  ensembl transcript: ENST00000551103
  gene symbol: IKZF4
  hgvsc: ENST00000551103.1:c.*624+24G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000450020
  ensembl transcript: ENST00000547791
  gene symbol: IKZF4
  hgvsc: ENST00000547791.1:c.730+24G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000412101
  ensembl transcript: ENST00000431367
  gene symbol: IKZF4
  hgvsc: ENST00000431367.2:c.559+24G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000448419
  ensembl transcript: ENST00000547167
  gene symbol: IKZF4
  hgvsc: ENST00000547167.1:c.865+24G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000547556
  gene symbol: IKZF4
  hgvsc: ENST00000547556.1:n.431+24G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl protein: ENSP00000262032
  ensembl transcript: ENST00000262032
  gene symbol: IKZF4
  hgvsc: ENST00000262032.5:c.865+24G>A
  variant of: http://identifiers.org/hgnc/13179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123411
  ensembl transcript: ENST00000551124
  gene symbol: IKZF4
  hgvsc: ENST00000551124.1:n.998+24G>A
  variant of: http://identifiers.org/hgnc/13179
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12617
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6408
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 222
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6814
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1162
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 995
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 815
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2955
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 963
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1889
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11152
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15808
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.543733983759918e-5
allele num: 64778
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8460
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9440
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.476e1

MQ
type: SiteQuality
SIO_000300: 5.931e1

DP
type: SiteQuality
SIO_000300: 1.458999e6

VQSLOD
type: SiteQuality
SIO_000300: 6.26e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.604e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.22e-1

GenotypeQuality
all individuals: 72
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 848
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1275
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 592
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38584
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5148
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1558
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 850
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1052
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63434
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8218
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.652474720596061e-5
allele num: 15032
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9158
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.373828271466067e-5
allele num: 10668
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6340
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.2e-1

DP
type: SiteQuality
SIO_000300: 1.367224e6

VQSLOD
type: SiteQuality
SIO_000300: -1.154e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.53e0

FS
type: SiteQuality
SIO_000300: 6.405e0

MQRankSum
type: SiteQuality
SIO_000300: 2.15e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

MQ
type: SiteQuality
SIO_000300: 5.911e1

QD
type: SiteQuality
SIO_000300: 1.268e1

GenotypeQuality
all individuals: 187
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1877
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1029
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2170
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3994
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 970
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2428
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 768
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1884
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6026
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13466
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60926
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10016
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.140771161305042e-4
allele num: 8766
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.251121e6

FS
type: SiteQuality
SIO_000300: 5.785e0

MQ
type: SiteQuality
SIO_000300: 5.883e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.9e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.875e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.9e-1

QD
type: SiteQuality
SIO_000300: 1.031e1

GenotypeQuality
all individuals: 11728
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2192
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1458
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1603
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 762
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3957
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 955
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 690
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 932
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6014
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60850
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.283626398721169e-4
allele num: 8758
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10018
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7860
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13424
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 7.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.329e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.16e-1

DP
type: SiteQuality
SIO_000300: 1.245554e6

MQRankSum
type: SiteQuality
SIO_000300: -3.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.91e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.36e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

QD
type: SiteQuality
SIO_000300: 1.021e1

GenotypeQuality
all individuals: 957
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 674
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1459
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1913
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2597
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1439
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3736
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12866
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.684068710003368e-4
allele num: 5938
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.157139551029854e-4
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 17
allele frequency: 2.829278034816762e-4
allele num: 60086
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7752
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.925e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.82e0

QD
type: SiteQuality
SIO_000300: 1.226e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.66e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.3e-2

FS
type: SiteQuality
SIO_000300: 2.702e0

DP
type: SiteQuality
SIO_000300: 1.216226e6

GenotypeQuality
all individuals: 211
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2525
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28031
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1546
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3649
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 936
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1083
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 694
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2684
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.299376299376299e-4
allele num: 7696
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9830
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59848
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.033e0

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

DP
type: SiteQuality
SIO_000300: 1.202248e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.35e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.929999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

FS
type: SiteQuality
SIO_000300: 9.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.197e0

GenotypeQuality
all individuals: 88
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2662
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3513
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 117
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2513
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1256
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29112
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 646
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1346
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7694
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 6.37653435357883e-4
allele num: 12546
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9764
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5890
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.8e0

VQSLOD
type: SiteQuality
SIO_000300: -3.165e-1

QD
type: SiteQuality
SIO_000300: 1.233e1

DP
type: SiteQuality
SIO_000300: 1.193599e6

MQRankSum
type: SiteQuality
SIO_000300: -1.8e-2

MQ
type: SiteQuality
SIO_000300: 5.948e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.09e-1

FS
type: SiteQuality
SIO_000300: 9.375999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

GenotypeQuality
all individuals: 88
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 472
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1566
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19045
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3270
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22689
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 859
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1464
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1986
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7310
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9030
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8124
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5494
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.765786127984179e-5
allele num: 56632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 712
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.039999999999999e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.94e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.94e-1

DP
type: SiteQuality
SIO_000300: 1.073179e6

MQRankSum
type: SiteQuality
SIO_000300: 2.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

FS
type: SiteQuality
SIO_000300: 1.393e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.82e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.23e-1

GenotypeQuality
all individuals: 404
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1439
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3324
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22094
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1543
bin: 5.25e1
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GenotypeQuality
all individuals: 170
bin: 9.75e1
variant carriers: 5

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8066
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.380834023750345e-4
allele num: 7242
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 704
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 7.127583749109053e-5
allele num: 56120
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10048
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5444
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8910
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.79e-1

FS
type: SiteQuality
SIO_000300: 1.6302e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.32e-1

QD
type: SiteQuality
SIO_000300: 1.162e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.252e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.72e-1

DP
type: SiteQuality
SIO_000300: 1.063066e6

GenotypeQuality
all individuals: 85
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 599
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variant carriers: 0

GenotypeQuality
all individuals: 19865
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8830
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8008
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.795977011494253e-5
allele num: 55680
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9710
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 704
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7210
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.046538e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.89e-1

FS
type: SiteQuality
SIO_000300: 1.057e0

MQ
type: SiteQuality
SIO_000300: 5.828e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.056e0

QD
type: SiteQuality
SIO_000300: 9.34e0

GenotypeQuality
all individuals: 84
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1989
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8020
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7212
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.793593284786742e-5
allele num: 55754
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 702
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9744
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8842
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5370
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.045316e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.23e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.89e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.005e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.41e-1

MQ
type: SiteQuality
SIO_000300: 5.177e1

FS
type: SiteQuality
SIO_000300: 1.0532e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.29e-1

QD
type: SiteQuality
SIO_000300: 1.59e0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2241
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55054
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7094
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8694
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5274
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 696
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.211303789338471e-4
allele num: 9342
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.030024e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.708e0

FS
type: SiteQuality
SIO_000300: 8.519e0

QD
type: SiteQuality
SIO_000300: 1.165e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -7.679999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.93e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.74e-1

GenotypeQuality
all individuals: 796
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 20810
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GenotypeQuality
all individuals: 413
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5252
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7078
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8696
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54952
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7900
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 692
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.082251082251082e-4
allele num: 9240
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.002e1

MQRankSum
type: SiteQuality
SIO_000300: 7.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.42e0

VQSLOD
type: SiteQuality
SIO_000300: -1.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

DP
type: SiteQuality
SIO_000300: 1.022172e6

MQ
type: SiteQuality
SIO_000300: 5.903e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.244e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.44e-1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 477
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variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 2.465483234714004e-4
allele num: 8112
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6744
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7480
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52056
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4898
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.52e-1

DP
type: SiteQuality
SIO_000300: 9.4575e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.72e-1

FS
type: SiteQuality
SIO_000300: 3.621e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.96e0

VQSLOD
type: SiteQuality
SIO_000300: -1.674e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.4e-3

QD
type: SiteQuality
SIO_000300: 4.94e0

GenotypeQuality
all individuals: 1890
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25304
bin: 2.25e1
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.18435998252512e-4
allele num: 4578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7656
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7208
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.994886545222116e-5
allele num: 50064
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6442
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.57997e5

VQSLOD
type: SiteQuality
SIO_000300: 1.21e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.131e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.01e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.19e0

FS
type: SiteQuality
SIO_000300: 1.085e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.78e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 933
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 588
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 5.678591709256105e-4
allele num: 7044
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49070
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7436
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4458
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6090
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.75e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.6e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.115e0

DP
type: SiteQuality
SIO_000300: 8.15752e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.59e-1

QD
type: SiteQuality
SIO_000300: 1.235e1

FS
type: SiteQuality
SIO_000300: 2.155e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.72e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6672
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5534
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7010
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.124675986911996e-5
allele num: 47066
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4202
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6048
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.52e0

MQ
type: SiteQuality
SIO_000300: 5.899e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.06e-2

DP
type: SiteQuality
SIO_000300: 7.43897e5

QD
type: SiteQuality
SIO_000300: 7.64e0

MQRankSum
type: SiteQuality
SIO_000300: -1.67e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.34e-1

GenotypeQuality
all individuals: 540
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variant carriers: 0

GenotypeQuality
all individuals: 5944
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GenotypeQuality
all individuals: 810
bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 7004
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 46936
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 1.661129568106312e-4
allele num: 6020
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 548
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.155e0

MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -1.12e-2

VQSLOD
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BaseQRankSum
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SIO_000300: -1.299e0

MQRankSum
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DP
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4166
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 6944
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.135474502434441e-5
allele num: 46828
num of homozygotes: 0

Other
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num of homozygotes: 0

ReadPosRankSum
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SIO_000300: -5.679999999999999e-1

FS
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MQ
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InbreedingCoeff
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SIO_000300: -1.12e-2

MQRankSum
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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SIO_000300: -5.679999999999999e-1

DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 41762
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 484
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 3.451846738004832e-4
allele num: 5794
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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MQRankSum
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MQ
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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DP
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VQSLOD
type: SiteQuality
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FS
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SIO_000300: 0.0e0

QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 5764
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.229654403567447e-5
allele num: 44850
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4630
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.29e-1

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 8.81971e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.31e-1

BaseQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.224001423360911e-5
allele num: 44964
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.24e0

MQRankSum
type: SiteQuality
SIO_000300: 8.25e-1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
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ReadPosRankSum
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MQ
type: SiteQuality
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InbreedingCoeff
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DP
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5752
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.224892092733502e-5
allele num: 44946
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BaseQRankSum
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DP
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ReadPosRankSum
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FS
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InbreedingCoeff
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MQ
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VQSLOD
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MQRankSum
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ClippingRankSum
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QD
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 6950
num of homozygotes: 0

European (Finnish)
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Other
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South Asian
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Latino
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 4
allele frequency: 8.865641207500332e-5
allele num: 45118
num of homozygotes: 0

QD
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ClippingRankSum
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FS
type: SiteQuality
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MQRankSum
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VQSLOD
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InbreedingCoeff
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MQ
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BaseQRankSum
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 45388
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Other
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East Asian
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European (Finnish)
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African
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Latino
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QD
type: SiteQuality
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VQSLOD
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BaseQRankSum
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MQ
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DP
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InbreedingCoeff
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FS
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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East Asian
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African
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European (Non-Finnish)
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South Asian
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Latino
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DP
type: SiteQuality
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BaseQRankSum
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VQSLOD
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MQ
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ClippingRankSum
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FS
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6996
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4806
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7258
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.118015842758504e-5
allele num: 47214
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.24e-1

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
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BaseQRankSum
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SIO_000300: 1.09e0

InbreedingCoeff
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SIO_000300: -2.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.67e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.78e-1

QD
type: SiteQuality
SIO_000300: 2.072e1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4938
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 6380
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12920
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.036825810656673e-5
allele num: 49096
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 666
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7396
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7464
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.845e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 8.84e-1

ReadPosRankSum
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ClippingRankSum
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SIO_000300: -2.534e0

InbreedingCoeff
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SIO_000300: -2.6e-3

BaseQRankSum
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DP
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SIO_000300: 1.041353e6

VQSLOD
type: SiteQuality
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4980
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.020446922859336e-5
allele num: 49494
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12956
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 668
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7462
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7512
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.85e-1

MQ
type: SiteQuality
SIO_000300: 5.797e1

QD
type: SiteQuality
SIO_000300: 1.016e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.69e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.92e-1

BaseQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.5e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.048268e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 7.596475235490732e-5
allele num: 13164
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7674
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5110
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6706
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7826
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 688
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50974
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.607e0

FS
type: SiteQuality
SIO_000300: 2.197e0

MQRankSum
type: SiteQuality
SIO_000300: 2.49e0

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

MQ
type: SiteQuality
SIO_000300: 5.777e1

QD
type: SiteQuality
SIO_000300: 5.8e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.317e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5186
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6826
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7746
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 698
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.2531328320802e-4
allele num: 7980
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13286
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.37e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.111107e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.95e0

MQRankSum
type: SiteQuality
SIO_000300: 4.7e-1

QD
type: SiteQuality
SIO_000300: 1.216e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7940
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.329670695568209e-5
allele num: 60066
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.675603217158177e-4
allele num: 5968
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9878
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8726
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14476
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
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MQRankSum
type: SiteQuality
SIO_000300: 5.76e-1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.942e1

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.587181345102431e-5
allele num: 60724
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14500
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6026
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6084
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.509569066527795e-5
allele num: 61448
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
type: Population
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allele frequency: 0.0e0
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African
type: Population
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
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allele num: 804
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South Asian
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allele count: 0
allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
SIO_000300: 8.21e-1

MQ
type: SiteQuality
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QD
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

South Asian
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allele count: 1
allele frequency: 7.011639321273313e-5
allele num: 14262
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10518
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 62338
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
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African
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InbreedingCoeff
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SIO_000300: 3.4e-3

BaseQRankSum
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ReadPosRankSum
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MQRankSum
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FS
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DP
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ClippingRankSum
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VQSLOD
type: SiteQuality
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QD
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9296
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.581377696248972e-5
allele num: 63236
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6324
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8344
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -5.0e-4

MQRankSum
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SIO_000300: 4.23e-1

VQSLOD
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BaseQRankSum
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SIO_000300: -9.3e-1

FS
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MQ
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DP
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ClippingRankSum
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ReadPosRankSum
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QD
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SIO_000300: 1.758e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 2
allele frequency: 1.638806948541462e-4
allele num: 12204
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6340
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8346
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10906
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.307577e6

MQRankSum
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SIO_000300: 4.01e-1

FS
type: SiteQuality
SIO_000300: 1.2895e1

InbreedingCoeff
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
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SIO_000300: -6.5e-1

BaseQRankSum
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SIO_000300: -1.603e0

VQSLOD
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SIO_000300: -1.654e0

QD
type: SiteQuality
SIO_000300: 1.086e1

ReadPosRankSum
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SIO_000300: 7.75e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10886
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.588612823282709e-5
allele num: 62948
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9292
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8342
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 11692
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6314
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.301309e6

FS
type: SiteQuality
SIO_000300: 4.112e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.37e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e-1

QD
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SIO_000300: 1.2e1

MQRankSum
type: SiteQuality
SIO_000300: 6.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.91e0

VQSLOD
type: SiteQuality
SIO_000300: 1.14e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6314
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 62876
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10880
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.077354018530489e-4
allele num: 9282
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8338
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.3e-2

FS
type: SiteQuality
SIO_000300: 5.812e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.363e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.24e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.82e-1

QD
type: SiteQuality
SIO_000300: 1.177e1

DP
type: SiteQuality
SIO_000300: 1.299728e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6306
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10866
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11066
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8332
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.595405232929164e-5
allele num: 62680
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: -4.41e-1

DP
type: SiteQuality
SIO_000300: 1.295397e6

BaseQRankSum
type: SiteQuality
SIO_000300: 6.3e-2

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 6.166e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 4.74e0

VQSLOD
type: SiteQuality
SIO_000300: -2.136e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.89e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 34

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10834
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6268
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.00060036021613e-4
allele num: 9994
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62254
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele count: 33
allele frequency: 3.976861894432394e-3
allele num: 8298
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Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.46e-1

BaseQRankSum
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ReadPosRankSum
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FS
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
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VQSLOD
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QD
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
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allele num: 7010
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African
type: Population
allele count: 1
allele frequency: 1.150483202945237e-4
allele num: 8692
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 57044
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Latino
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allele frequency: 0.0e0
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Other
type: Population
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East Asian
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allele count: 0
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allele num: 7600
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
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BaseQRankSum
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DP
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MQ
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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East Asian
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allele frequency: 1.37438152831226e-4
allele num: 7276
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 54834
num of homozygotes: 0

Latino
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African
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allele frequency: 0.0e0
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European (Finnish)
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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FS
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QD
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DP
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VQSLOD
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MQ
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MQRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
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allele num: 53524
num of homozygotes: 0

Latino
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African
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East Asian
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European (Finnish)
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Other
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allele num: 660
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South Asian
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VQSLOD
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QD
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DP
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BaseQRankSum
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MQ
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ClippingRankSum
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FS
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
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allele num: 648
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5294
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7912
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5940
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6812
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51598
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.35829e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.15e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.37e0

QD
type: SiteQuality
SIO_000300: 1.271e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.017e0

VQSLOD
type: SiteQuality
SIO_000300: 2.81e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 8.081e0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4396
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6224
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4704
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40360
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4976
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.154155986818015e-5
allele num: 10924
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.447e0

VQSLOD
type: SiteQuality
SIO_000300: 7.35e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.53e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

DP
type: SiteQuality
SIO_000300: 8.34227e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.900000000000001e-3

QD
type: SiteQuality
SIO_000300: 1.29e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4728
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.996007984031936e-4
allele num: 5010
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40426
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10994
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6232
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4404
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.15e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.521e0

QD
type: SiteQuality
SIO_000300: 1.879e1

DP
type: SiteQuality
SIO_000300: 8.34035e5

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.3e-3

VQSLOD
type: SiteQuality
SIO_000300: -4.411e-1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 593
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4422
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5040
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4794
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.130752373995617e-5
allele num: 10952
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.598976654940838e-4
allele num: 6254
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40586
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.52416e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.054e0

QD
type: SiteQuality
SIO_000300: 4.22e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.73e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

FS
type: SiteQuality
SIO_000300: 7.214e0

VQSLOD
type: SiteQuality
SIO_000300: -1.89e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.6e-3

GenotypeQuality
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bin: 3.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 48

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4448
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.081598667776853e-4
allele num: 4804
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 16
allele frequency: 3.914660403210022e-4
allele num: 40872
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5106
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 1.265822784810127e-3
allele num: 6320
num of homozygotes: 0

South Asian
type: Population
allele count: 27
allele frequency: 2.428494333513222e-3
allele num: 11118
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.59132e5

FS
type: SiteQuality
SIO_000300: 1.948e0

MQRankSum
type: SiteQuality
SIO_000300: 1.09e-1

QD
type: SiteQuality
SIO_000300: 1.245e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.95e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.68e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.56e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41628
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.887308922858158e-5
allele num: 11252
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4956
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5248
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 590
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.546e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.84746e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.79e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 963
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5390
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.977066034005536e-4
allele num: 5058
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42342
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.65e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.89e0

QD
type: SiteQuality
SIO_000300: 1.462e1

VQSLOD
type: SiteQuality
SIO_000300: -1.528e0

FS
type: SiteQuality
SIO_000300: 1.2601e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.65e-1

DP
type: SiteQuality
SIO_000300: 9.19014e5

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12356
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6080
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6944
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4844
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.17542638357118e-5
allele num: 45968
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.427e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.36e-1

FS
type: SiteQuality
SIO_000300: 9.134e0

DP
type: SiteQuality
SIO_000300: 1.036012e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.7e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.904e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1121
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GenotypeQuality
all individuals: 814
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 11
allele frequency: 1.683501683501683e-3
allele num: 6534
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 5.495368189668708e-4
allele num: 12738
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 207
allele frequency: 4.269273604751887e-3
allele num: 48486
num of homozygotes: 1

Other
type: Population
allele count: 1
allele frequency: 1.479289940828402e-3
allele num: 676
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 4.180602006688963e-4
allele num: 7176
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5914
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 13
allele frequency: 2.567140600315956e-3
allele num: 5064
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.74e-1

QD
type: SiteQuality
SIO_000300: 1.416e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 6.52e-1

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 6.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.3e-2

DP
type: SiteQuality
SIO_000300: 1.09501e6

GenotypeQuality
all individuals: 942
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
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allele frequency: 7.797878976918278e-5
allele num: 12824
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7202
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 48944
num of homozygotes: 0

DP
type: SiteQuality
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VQSLOD
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BaseQRankSum
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SIO_000300: -2.178e0

QD
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InbreedingCoeff
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ClippingRankSum
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FS
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MQ
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.85e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.314751511964239e-4
allele num: 7606
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 7352
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5390
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -2.1e-3

DP
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ClippingRankSum
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FS
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MQ
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ReadPosRankSum
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SIO_000300: 9.78e-1

VQSLOD
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MQRankSum
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
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MQRankSum
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MQ
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ClippingRankSum
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DP
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VQSLOD
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ReadPosRankSum
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FS
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InbreedingCoeff
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BaseQRankSum
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7508
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.089087344805053e-4
allele num: 9182
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 59454
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 7.37e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.386e0

MQRankSum
type: SiteQuality
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QD
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VQSLOD
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DP
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8100
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.583731905862975e-5
allele num: 63142
num of homozygotes: 0

InbreedingCoeff
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ReadPosRankSum
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DP
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BaseQRankSum
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FS
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MQ
type: SiteQuality
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QD
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VQSLOD
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MQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 6.114711997064938e-5
allele num: 16354
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Latino
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African
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Other
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European (Finnish)
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FS
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VQSLOD
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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MQ
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InbreedingCoeff
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ReadPosRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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Latino
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African
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East Asian
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European (Non-Finnish)
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Other
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ReadPosRankSum
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QD
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FS
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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VQSLOD
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MQ
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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European (Non-Finnish)
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European (Finnish)
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East Asian
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South Asian
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Other
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QD
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FS
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MQ
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InbreedingCoeff
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MQRankSum
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DP
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

Latino
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African
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Other
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.997601918465228e-5
allele num: 66720
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.92e-1

FS
type: SiteQuality
SIO_000300: 9.331e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.15e0

QD
type: SiteQuality
SIO_000300: 1.311e1

DP
type: SiteQuality
SIO_000300: 1.554042e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.0e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 9.82e-1

MQ
type: SiteQuality
SIO_000300: 5.928e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.554682e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.78e0

VQSLOD
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.52e0

MQRankSum
type: SiteQuality
SIO_000300: 6.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -9.3e-1

DP
type: SiteQuality
SIO_000300: 1.554953e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.973e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.726e0

QD
type: SiteQuality
SIO_000300: 1.453e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e-1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.020616452337212e-4
allele num: 9798
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.028e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.532e0

FS
type: SiteQuality
SIO_000300: 3.372e0

QD
type: SiteQuality
SIO_000300: 1.498e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.73e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.685e0

MQ
type: SiteQuality
SIO_000300: 5.923e1

DP
type: SiteQuality
SIO_000300: 1.55557e6

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.477857639693948e-4
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.2e-1

QD
type: SiteQuality
SIO_000300: 1.24e1

VQSLOD
type: SiteQuality
SIO_000300: -2.664e-1

DP
type: SiteQuality
SIO_000300: 1.555838e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.92e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

FS
type: SiteQuality
SIO_000300: 8.638999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.33e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.19e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 41

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 39
allele frequency: 5.843922320786382e-4
allele num: 66736
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.020616452337212e-4
allele num: 9798
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.7e-2

DP
type: SiteQuality
SIO_000300: 1.558922e6

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.87e0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.495190146543199e-5
allele num: 66738
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.1255e1

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

BaseQRankSum
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SIO_000300: -4.715e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.73e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.296e-1

MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.557551e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.028100775193798e-4
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.666e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.5e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.862e0

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.72e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 32

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.028100775193798e-4
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 26
allele frequency: 3.014842300556586e-3
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.69e-1

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.14e-1

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.967e1

VQSLOD
type: SiteQuality
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