19-47995254-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47995254
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47995254
    reference: chr 19
allele count: 266
allele frequency: 2.216038789009781e-3
allele num: 120034
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.3026+18C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.347+18C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*690+18C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-1450G>A
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472235
  ensembl transcript: ENST00000594217
  gene symbol: NAPA
  hgvsc: ENST00000594217.1:c.30+18C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.471+18C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.549+18C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*361+18C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-1450G>A
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.696+18C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.666+18C>T
  variant of: http://identifiers.org/hgnc/7641
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3219
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 20271
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 14640
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6274
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 5.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 8031
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 4.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 6.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 5.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 9.75e1
  variant carriers: 41
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ

19-47995256-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47995256
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47995256
    reference: chr 19
allele count: 4
allele frequency: 3.329171868497711e-5
allele num: 120150
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-1448G>C
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*361+16C>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.347+16C>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-1448G>C
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472235
  ensembl transcript: ENST00000594217
  gene symbol: NAPA
  hgvsc: ENST00000594217.1:c.30+16C>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.696+16C>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.471+16C>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*690+16C>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.549+16C>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.3026+16C>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.666+16C>G
  variant of: http://identifiers.org/hgnc/7641
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6285
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3216
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20450
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14736
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8243
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-47995257-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47995257
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47995257
    reference: chr 19
allele count: 2
allele frequency: 1.664530519167069e-5
allele num: 120154
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.471+15G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*361+15G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.549+15G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-1447C>T
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.347+15G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-1447C>T
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.3026+15G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472235
  ensembl transcript: ENST00000594217
  gene symbol: NAPA
  hgvsc: ENST00000594217.1:c.30+15G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.696+15G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*690+15G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.666+15G>A
  variant of: http://identifiers.org/hgnc/7641
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6291
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8262
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20526
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14758
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

19-47995258-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47995258
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47995258
    reference: chr 19
allele count: 5
allele frequency: 4.156552389186313e-5
allele num: 120292
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.347+14C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.471+14C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472235
  ensembl transcript: ENST00000594217
  gene symbol: NAPA
  hgvsc: ENST00000594217.1:c.30+14C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-1446G>A
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.3026+14C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-1446G>A
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.696+14C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*690+14C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*361+14C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.549+14C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.666+14C>T
  variant of: http://identifiers.org/hgnc/7641
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20608
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3216
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6291
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8446
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14772
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

19-47995260-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47995260
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47995260
    reference: chr 19
allele count: 3
allele frequency: 2.490908185124296e-5
allele num: 120438
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.549+12C>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.696+12C>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-1444G>T
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.3026+12C>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.666+12C>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-1444G>T
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472235
  ensembl transcript: ENST00000594217
  gene symbol: NAPA
  hgvsc: ENST00000594217.1:c.30+12C>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*361+12C>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.471+12C>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.347+12C>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*690+12C>A
  variant of: http://identifiers.org/hgnc/7641
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14770
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20673
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6290
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8660
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

19-47995261-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47995261
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47995261
    reference: chr 19
allele count: 1
allele frequency: 8.301510874979247e-6
allele num: 120460
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-1443G>A
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-1443G>A
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.3026+11C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.696+11C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.471+11C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.666+11C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.347+11C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472235
  ensembl transcript: ENST00000594217
  gene symbol: NAPA
  hgvsc: ENST00000594217.1:c.30+11C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.549+11C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*361+11C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*690+11C>T
  variant of: http://identifiers.org/hgnc/7641
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14780
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6284
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20703
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8688
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1983
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

19-47995278-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47995278
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47995278
    reference: chr 19
allele count: 1
allele frequency: 8.268152729317216e-6
allele num: 120946
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*684C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-1426G>A
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.690C>T
  hgvsp: ENST00000593761.1:c.690C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.660C>T
  hgvsp: ENST00000263354.3:c.660C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.543C>T
  hgvsp: ENST00000595227.1:c.543C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.3020C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472235
  ensembl transcript: ENST00000594217
  gene symbol: NAPA
  hgvsc: ENST00000594217.1:c.24C>T
  hgvsp: ENST00000594217.1:c.24C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*355C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-1426G>A
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.341C>T
  hgvsp: ENST00000594155.1:c.341C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.465C>T
  variant of: http://identifiers.org/hgnc/7641
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21057
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14838
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8974
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn220Asn
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

19-47995285-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47995285
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47995285
    reference: chr 19
allele count: 3
allele frequency: 2.478355693609147e-5
allele num: 121048
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.458T>C
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-1419A>G
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.334T>C
  hgvsp: ENSP00000471261.1:p.Met112Thr
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*677T>C
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-1419A>G
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.653T>C
  hgvsp: ENSP00000263354.2:p.Met218Thr
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472235
  ensembl transcript: ENST00000594217
  gene symbol: NAPA
  hgvsc: ENST00000594217.1:c.17T>C
  hgvsp: ENSP00000472235.1:p.Met6Thr
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.683T>C
  hgvsp: ENSP00000472667.1:p.Met228Thr
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.3013T>C
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*348T>C
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.536T>C
  hgvsp: ENSP00000471520.1:p.Met179Thr
  variant of: http://identifiers.org/hgnc/7641
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8995
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21141
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6292
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14836
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met218Thr
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

19-47995289-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47995289
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47995289
    reference: chr 19
allele count: 1
allele frequency: 8.258729477057249e-6
allele num: 121084
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472235
  ensembl transcript: ENST00000594217
  gene symbol: NAPA
  hgvsc: ENST00000594217.1:c.13G>A
  hgvsp: ENSP00000472235.1:p.Asp5Asn
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.3009G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.532G>A
  hgvsp: ENSP00000471520.1:p.Asp178Asn
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.679G>A
  hgvsp: ENSP00000472667.1:p.Asp227Asn
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.330G>A
  hgvsp: ENSP00000471261.1:p.Asp111Asn
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.649G>A
  hgvsp: ENSP00000263354.2:p.Asp217Asn
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-1415C>T
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*344G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*673G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-1415C>T
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.454G>A
  variant of: http://identifiers.org/hgnc/7641
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6302
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21159
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9001
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14846
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3213
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Asp217Asn
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

19-47995290-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47995290
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47995290
    reference: chr 19
allele count: 1
allele frequency: 8.25722920416825e-6
allele num: 121106
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*672C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.678C>T
  hgvsp: ENST00000593761.1:c.678C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-1414G>A
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*343C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.648C>T
  hgvsp: ENST00000263354.3:c.648C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.3008C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472235
  ensembl transcript: ENST00000594217
  gene symbol: NAPA
  hgvsc: ENST00000594217.1:c.12C>T
  hgvsp: ENST00000594217.1:c.12C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.453C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-1414G>A
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.329C>T
  hgvsp: ENST00000594155.1:c.329C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.531C>T
  hgvsp: ENST00000595227.1:c.531C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7641
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14847
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9013
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21170
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile216Ile
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

19-47995296-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47995296
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47995296
    reference: chr 19
allele count: 2
allele frequency: 1.650873311982039e-5
allele num: 121148
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.3002C>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.672C>G
  hgvsp: ENSP00000472667.1:p.Phe224Leu
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-1408G>C
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-1408G>C
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472235
  ensembl transcript: ENST00000594217
  gene symbol: NAPA
  hgvsc: ENST00000594217.1:c.6C>G
  hgvsp: ENSP00000472235.1:p.Phe2Leu
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.525C>G
  hgvsp: ENSP00000471520.1:p.Phe175Leu
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.642C>G
  hgvsp: ENSP00000263354.2:p.Phe214Leu
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.323C>G
  hgvsp: ENSP00000471261.1:p.Phe108Leu
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.447C>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*337C>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*666C>G
  variant of: http://identifiers.org/hgnc/7641
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14839
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21207
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9027
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3213
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe214Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum

19-47995305-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47995305
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47995305
    reference: chr 19
allele count: 1
allele frequency: 8.252323028932645e-6
allele num: 121178
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*328C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.314C>T
  hgvsp: ENST00000594155.1:c.314C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.663C>T
  hgvsp: ENST00000593761.1:c.663C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.633C>T
  hgvsp: ENST00000263354.3:c.633C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-1399G>A
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.438C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.516C>T
  hgvsp: ENST00000595227.1:c.516C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*657C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-1399G>A
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2993C>T
  variant of: http://identifiers.org/hgnc/7641
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9033
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3213
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14843
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21234
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu211Leu
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP

19-47995309-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47995309
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47995309
    reference: chr 19
allele count: 1
allele frequency: 8.25082508250825e-6
allele num: 121200
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.434C>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.512C>G
  hgvsp: ENSP00000471520.1:p.Ala171Gly
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*324C>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2989C>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*653C>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.629C>G
  hgvsp: ENSP00000263354.2:p.Ala210Gly
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.659C>G
  hgvsp: ENSP00000472667.1:p.Ala220Gly
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.310C>G
  hgvsp: ENSP00000471261.1:p.Ala104Gly
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-1395G>C
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-1395G>C
  variant of: http://identifiers.org/hgnc/44118
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14846
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6296
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21248
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9027
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3213
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1366
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala210Gly
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ

19-47995311-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47995311
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47995311
    reference: chr 19
allele count: 4
allele frequency: 3.3003300330033e-5
allele num: 121200
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.432G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-1393C>T
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*322G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.308G>A
  hgvsp: ENST00000594155.1:c.308G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*651G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.657G>A
  hgvsp: ENST00000593761.1:c.657G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.510G>A
  hgvsp: ENST00000595227.1:c.510G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.627G>A
  hgvsp: ENST00000263354.3:c.627G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2987G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-1393C>T
  variant of: http://identifiers.org/hgnc/44118
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21248
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14849
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3213
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9024
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6297
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1366
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala209Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD

19-47995312-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47995312
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47995312
    reference: chr 19
allele count: 1
allele frequency: 8.250416646040625e-6
allele num: 121206
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.626C>T
  hgvsp: ENSP00000263354.2:p.Ala209Val
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.431C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.307C>T
  hgvsp: ENSP00000471261.1:p.Ala103Val
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*650C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.656C>T
  hgvsp: ENSP00000472667.1:p.Ala219Val
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*321C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-1392G>A
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.509C>T
  hgvsp: ENSP00000471520.1:p.Ala170Val
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2986C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-1392G>A
  variant of: http://identifiers.org/hgnc/44118
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14851
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9017
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6296
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21255
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala209Val
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

19-47995316-TGAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47995316
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47995313
    reference: chr 19
allele count: 2
allele frequency: 1.649947201689546e-5
allele num: 121216
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-1383_244-1381delAAG
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.300_302delTTC
  hgvsp: ENSP00000471261.1:p.Phe101del
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.619_621delTTC
  hgvsp: ENSP00000263354.2:p.Phe207del
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*314_*316delTTC
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*643_*645delTTC
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.502_504delTTC
  hgvsp: ENSP00000471520.1:p.Phe168del
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.649_651delTTC
  hgvsp: ENSP00000472667.1:p.Phe217del
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.424_426delTTC
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: incomplete_terminal_codon_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470946
  ensembl transcript: ENST00000598615
  gene symbol: NAPA
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2979_2981delTTC
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-1383_218-1381delAAG
  variant of: http://identifiers.org/hgnc/44118
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6296
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14853
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9011
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21260
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe207del
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: TGAA
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

19-47995317-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47995317
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47995317
    reference: chr 19
allele count: 1
allele frequency: 8.250144377526608e-6
allele num: 121210
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.651C>A
  hgvsp: ENSP00000472667.1:p.Phe217Leu
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2981C>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*645C>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*316C>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-1387G>T
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.426C>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.621C>A
  hgvsp: ENSP00000263354.2:p.Phe207Leu
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.504C>A
  hgvsp: ENSP00000471520.1:p.Phe168Leu
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.302C>A
  hgvsp: ENSP00000471261.1:p.Phe101Leu
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-1387G>T
  variant of: http://identifiers.org/hgnc/44118
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9011
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14852
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21262
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6296
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7930
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 28124
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Phe207Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

19-47995320-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47995320
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47995320
    reference: chr 19
allele count: 4
allele frequency: 3.30011220381493e-5
allele num: 121208
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.501C>T
  hgvsp: ENST00000595227.1:c.501C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-1384G>A
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.299C>T
  hgvsp: ENST00000594155.1:c.299C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*313C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.618C>T
  hgvsp: ENST00000263354.3:c.618C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470946
  ensembl transcript: ENST00000598615
  gene symbol: NAPA
  hgvsc: ENST00000598615.1:c.306C>T
  hgvsp: ENST00000598615.1:c.306C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*642C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-1384G>A
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2978C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.423C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.648C>T
  hgvsp: ENST00000593761.1:c.648C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7641
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21261
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14853
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9003
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1693
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3210
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6295
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe206Phe
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

19-47995320-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47995320
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47995320
    reference: chr 19
allele count: 1
allele frequency: 8.250280509537325e-6
allele num: 121208
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*313C>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.618C>A
  hgvsp: ENSP00000263354.2:p.Phe206Leu
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.423C>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-1384G>T
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2978C>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.299C>A
  hgvsp: ENSP00000471261.1:p.Phe100Leu
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470946
  ensembl transcript: ENST00000598615
  gene symbol: NAPA
  hgvsc: ENST00000598615.1:c.306C>A
  hgvsp: ENSP00000470946.1:p.Phe102Leu
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.501C>A
  hgvsp: ENSP00000471520.1:p.Phe167Leu
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.648C>A
  hgvsp: ENSP00000472667.1:p.Phe216Leu
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-1384G>T
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*642C>A
  variant of: http://identifiers.org/hgnc/7641
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21261
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3210
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1693
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14853
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9003
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe206Leu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP

19-47995321-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47995321
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47995321
    reference: chr 19
allele count: 16
allele frequency: 1.320023100404257e-4
allele num: 121210
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.298T>A
  hgvsp: ENSP00000471261.1:p.Phe100Tyr
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.500T>A
  hgvsp: ENSP00000471520.1:p.Phe167Tyr
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-1383A>T
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*641T>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.617T>A
  hgvsp: ENSP00000263354.2:p.Phe206Tyr
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*312T>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2977T>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.647T>A
  hgvsp: ENSP00000472667.1:p.Phe216Tyr
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470946
  ensembl transcript: ENST00000598615
  gene symbol: NAPA
  hgvsc: ENST00000598615.1:c.305T>A
  hgvsp: ENSP00000470946.1:p.Phe102Tyr
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.422T>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-1383A>T
  variant of: http://identifiers.org/hgnc/44118
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8997
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6297
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14849
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1693
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3209
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21262
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Phe206Tyr
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum

19-47995324-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47995324
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47995324
    reference: chr 19
allele count: 1
allele frequency: 8.250416646040625e-6
allele num: 121206
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-1380T>A
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.614A>T
  hgvsp: ENSP00000263354.2:p.Tyr205Phe
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-1380T>A
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.644A>T
  hgvsp: ENSP00000472667.1:p.Tyr215Phe
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2974A>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.295A>T
  hgvsp: ENSP00000471261.1:p.Tyr99Phe
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*309A>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.497A>T
  hgvsp: ENSP00000471520.1:p.Tyr166Phe
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*638A>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470946
  ensembl transcript: ENST00000598615
  gene symbol: NAPA
  hgvsc: ENST00000598615.1:c.302A>T
  hgvsp: ENSP00000470946.1:p.Tyr101Phe
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.419A>T
  variant of: http://identifiers.org/hgnc/7641
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21273
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8980
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14850
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6297
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1692
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3208
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr205Phe
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

http://identifiers.org/exac.variant/19-47995325-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47995325
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47995325
    reference: chr 19
allele count: 3
allele frequency: 2.475247524752475e-5
allele num: 121200
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-1379A>C
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*637T>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*308T>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-1379A>C
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2973T>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.294T>G
  hgvsp: ENSP00000471261.1:p.Tyr99Asp
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.418T>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.613T>G
  hgvsp: ENSP00000263354.2:p.Tyr205Asp
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.643T>G
  hgvsp: ENSP00000472667.1:p.Tyr215Asp
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.496T>G
  hgvsp: ENSP00000471520.1:p.Tyr166Asp
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470946
  ensembl transcript: ENST00000598615
  gene symbol: NAPA
  hgvsc: ENST00000598615.1:c.301T>G
  hgvsp: ENSP00000470946.1:p.Tyr101Asp
  variant of: http://identifiers.org/hgnc/7641
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14849
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3209
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6296
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21272
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8976
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1692
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr205Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: QD

19-47995332-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47995332
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47995332
    reference: chr 19
allele count: 4
allele frequency: 3.301310620316266e-5
allele num: 121164
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*301C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.606C>T
  hgvsp: ENST00000263354.3:c.606C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.636C>T
  hgvsp: ENST00000593761.1:c.636C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*630C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470946
  ensembl transcript: ENST00000598615
  gene symbol: NAPA
  hgvsc: ENST00000598615.1:c.294C>T
  hgvsp: ENST00000598615.1:c.294C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-1372G>A
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.489C>T
  hgvsp: ENST00000595227.1:c.489C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.411C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2966C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.287C>T
  hgvsp: ENST00000594155.1:c.287C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-1372G>A
  variant of: http://identifiers.org/hgnc/44118
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3208
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14847
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21264
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6297
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1692
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8938
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala202Ala
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD

19-47995334-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47995334
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47995334
    reference: chr 19
allele count: 4
allele frequency: 3.301746623964077e-5
allele num: 121148
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-1370C>T
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.634G>A
  hgvsp: ENSP00000472667.1:p.Ala212Thr
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.285G>A
  hgvsp: ENSP00000471261.1:p.Ala96Thr
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*628G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.604G>A
  hgvsp: ENSP00000263354.2:p.Ala202Thr
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*299G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470946
  ensembl transcript: ENST00000598615
  gene symbol: NAPA
  hgvsc: ENST00000598615.1:c.292G>A
  hgvsp: ENSP00000470946.1:p.Ala98Thr
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.487G>A
  hgvsp: ENSP00000471520.1:p.Ala163Thr
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2964G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-1370C>T
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.409G>A
  variant of: http://identifiers.org/hgnc/7641
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14855
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3209
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21269
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8908
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1692
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala202Thr
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP

19-47995335-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47995335
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47995335
    reference: chr 19
allele count: 1
allele frequency: 8.254366559910193e-6
allele num: 121148
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.486C>T
  hgvsp: ENST00000595227.1:c.486C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.633C>T
  hgvsp: ENST00000593761.1:c.633C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2963C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-1369G>A
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.603C>T
  hgvsp: ENST00000263354.3:c.603C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-1369G>A
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.284C>T
  hgvsp: ENST00000594155.1:c.284C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*627C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.408C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*298C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470946
  ensembl transcript: ENST00000598615
  gene symbol: NAPA
  hgvsc: ENST00000598615.1:c.291C>T
  hgvsp: ENST00000598615.1:c.291C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7641
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8901
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14854
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21276
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6296
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser201Ser
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD

19-47995344-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47995344
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47995344
    reference: chr 19
allele count: 1
allele frequency: 8.258047467256841e-6
allele num: 121094
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.275C>T
  hgvsp: ENST00000594155.1:c.275C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*289C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2954C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-1360G>A
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470946
  ensembl transcript: ENST00000598615
  gene symbol: NAPA
  hgvsc: ENST00000598615.1:c.282C>T
  hgvsp: ENST00000598615.1:c.282C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.594C>T
  hgvsp: ENST00000263354.3:c.594C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.624C>T
  hgvsp: ENST00000593761.1:c.624C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*618C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.477C>T
  hgvsp: ENST00000595227.1:c.477C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.399C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-1360G>A
  variant of: http://identifiers.org/hgnc/44118
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14848
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8781
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6297
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3208
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21268
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu198Leu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ

19-47995345-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47995345
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47995345
    reference: chr 19
allele count: 1
allele frequency: 8.259411599517651e-6
allele num: 121074
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.593T>A
  hgvsp: ENSP00000263354.2:p.Leu198His
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*617T>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*288T>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2953T>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.476T>A
  hgvsp: ENSP00000471520.1:p.Leu159His
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.274T>A
  hgvsp: ENSP00000471261.1:p.Leu92His
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.398T>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.623T>A
  hgvsp: ENSP00000472667.1:p.Leu208His
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-1359A>T
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470946
  ensembl transcript: ENST00000598615
  gene symbol: NAPA
  hgvsc: ENST00000598615.1:c.281T>A
  hgvsp: ENSP00000470946.1:p.Leu94His
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-1359A>T
  variant of: http://identifiers.org/hgnc/44118
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8762
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14851
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21261
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6296
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu198His
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff

19-47995346-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47995346
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47995346
    reference: chr 19
allele count: 1
allele frequency: 8.261049153242462e-6
allele num: 121050
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-1358G>A
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.592C>T
  hgvsp: ENSP00000263354.2:p.Leu198Phe
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*287C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*616C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.622C>T
  hgvsp: ENSP00000472667.1:p.Leu208Phe
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2952C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.475C>T
  hgvsp: ENSP00000471520.1:p.Leu159Phe
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.273C>T
  hgvsp: ENSP00000471261.1:p.Leu92Phe
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470946
  ensembl transcript: ENST00000598615
  gene symbol: NAPA
  hgvsc: ENST00000598615.1:c.280C>T
  hgvsp: ENSP00000470946.1:p.Leu94Phe
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.397C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-1358G>A
  variant of: http://identifiers.org/hgnc/44118
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8726
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21260
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14849
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu198Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

19-47995348-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47995348
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47995348
    reference: chr 19
allele count: 1
allele frequency: 8.262414277451872e-6
allele num: 121030
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.620T>C
  hgvsp: ENSP00000472667.1:p.Leu207Pro
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.590T>C
  hgvsp: ENSP00000263354.2:p.Leu197Pro
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-1356A>G
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*614T>C
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*285T>C
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-1356A>G
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.473T>C
  hgvsp: ENSP00000471520.1:p.Leu158Pro
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.395T>C
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2950T>C
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.271T>C
  hgvsp: ENSP00000471261.1:p.Leu91Pro
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470946
  ensembl transcript: ENST00000598615
  gene symbol: NAPA
  hgvsc: ENST00000598615.1:c.278T>C
  hgvsp: ENSP00000470946.1:p.Leu93Pro
  variant of: http://identifiers.org/hgnc/7641
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8711
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3208
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21249
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14855
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6298
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu197Pro
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

19-47995351-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47995351
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47995351
    reference: chr 19
allele count: 1
allele frequency: 8.266102367411717e-6
allele num: 120976
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.617C>G
  hgvsp: ENSP00000472667.1:p.Pro206Arg
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470946
  ensembl transcript: ENST00000598615
  gene symbol: NAPA
  hgvsc: ENST00000598615.1:c.275C>G
  hgvsp: ENSP00000470946.1:p.Pro92Arg
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.268C>G
  hgvsp: ENSP00000471261.1:p.Pro90Arg
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2947C>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*282C>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.392C>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.470C>G
  hgvsp: ENSP00000471520.1:p.Pro157Arg
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-1353G>C
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.587C>G
  hgvsp: ENSP00000263354.2:p.Pro196Arg
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*611C>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-1353G>C
  variant of: http://identifiers.org/hgnc/44118
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6297
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3208
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8661
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21228
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14848
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro196Arg
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

19-47995358-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47995358
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47995358
    reference: chr 19
allele count: 7
allele frequency: 5.794701986754967e-5
allele num: 120800
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.463G>A
  hgvsp: ENSP00000471520.1:p.Asp155Asn
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470946
  ensembl transcript: ENST00000598615
  gene symbol: NAPA
  hgvsc: ENST00000598615.1:c.268G>A
  hgvsp: ENSP00000470946.1:p.Asp90Asn
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.385G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.261G>A
  hgvsp: ENSP00000471261.1:p.Asp88Asn
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2940G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.610G>A
  hgvsp: ENSP00000472667.1:p.Asp204Asn
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*275G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-1346C>T
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.580G>A
  hgvsp: ENSP00000263354.2:p.Asp194Asn
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*604G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-1346C>T
  variant of: http://identifiers.org/hgnc/44118
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8397
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3210
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6300
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14843
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21188
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Asp194Asn
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

19-47995367-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47995367
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47995367
    reference: chr 19
allele count: 3
allele frequency: 2.489502597381043e-5
allele num: 120506
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2931A>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-1337T>C
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.454A>G
  hgvsp: ENSP00000471520.1:p.Asn152Asp
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470946
  ensembl transcript: ENST00000598615
  gene symbol: NAPA
  hgvsc: ENST00000598615.1:c.259A>G
  hgvsp: ENSP00000470946.1:p.Asn87Asp
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.571A>G
  hgvsp: ENSP00000263354.2:p.Asn191Asp
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.601A>G
  hgvsp: ENSP00000472667.1:p.Asn201Asp
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.252A>G
  hgvsp: ENSP00000471261.1:p.Asn85Asp
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*595A>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.376A>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*266A>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-1337T>C
  variant of: http://identifiers.org/hgnc/44118
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8005
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14788
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6294
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21041
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3204
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn191Asp
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-47995368-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47995368
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47995368
    reference: chr 19
allele count: 1
allele frequency: 8.301510874979247e-6
allele num: 120460
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.375C>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-1336G>C
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*265C>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470946
  ensembl transcript: ENST00000598615
  gene symbol: NAPA
  hgvsc: ENST00000598615.1:c.258C>G
  hgvsp: ENST00000598615.1:c.258C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2930C>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.453C>G
  hgvsp: ENST00000595227.1:c.453C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.570C>G
  hgvsp: ENST00000263354.3:c.570C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*594C>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.251C>G
  hgvsp: ENST00000594155.1:c.251C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.600C>G
  hgvsp: ENST00000593761.1:c.600C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-1336G>C
  variant of: http://identifiers.org/hgnc/44118
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3206
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20989
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14789
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7959
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6294
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr190Thr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

19-47995374-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47995374
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47995374
    reference: chr 19
allele count: 1
allele frequency: 8.329862557267805e-6
allele num: 120050
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-1330C>T
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*259G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.564G>A
  hgvsp: ENST00000263354.3:c.564G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470946
  ensembl transcript: ENST00000598615
  gene symbol: NAPA
  hgvsc: ENST00000598615.1:c.252G>A
  hgvsp: ENST00000598615.1:c.252G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.594G>A
  hgvsp: ENST00000593761.1:c.594G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-1330C>T
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*588G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2924G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.447G>A
  hgvsp: ENST00000595227.1:c.447G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.245G>A
  hgvsp: ENST00000594155.1:c.245G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.369G>A
  variant of: http://identifiers.org/hgnc/7641
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6291
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20764
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14745
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7317
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3204
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.564G>A
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP

19-47995381-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47995381
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47995381
    reference: chr 19
allele count: 3
allele frequency: 2.505344735435596e-5
allele num: 119744
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.592-5T>C
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.367-5T>C
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*586-5T>C
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.562-5T>C
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*257-5T>C
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.445-5T>C
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-1323A>G
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470946
  ensembl transcript: ENST00000598615
  gene symbol: NAPA
  hgvsc: ENST00000598615.1:c.250-5T>C
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.243-5T>C
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2917T>C
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-1323A>G
  variant of: http://identifiers.org/hgnc/44118
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14605
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20608
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6923
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3173
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6257
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.562-5T>C
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

19-47995383-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47995383
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47995383
    reference: chr 19
allele count: 3
allele frequency: 2.507103459802775e-5
allele num: 119660
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-1321C>T
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.367-7G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.445-7G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2915G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*257-7G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-1321C>T
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*586-7G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.562-7G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.592-7G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470946
  ensembl transcript: ENST00000598615
  gene symbol: NAPA
  hgvsc: ENST00000598615.1:c.250-7G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.243-7G>A
  variant of: http://identifiers.org/hgnc/7641
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3177
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6259
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20590
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14598
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6802
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.562-7G>A
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

19-47995386-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47995386
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47995386
    reference: chr 19
allele count: 3
allele frequency: 2.510082163356147e-5
allele num: 119518
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.367-10A>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*586-10A>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*257-10A>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2912A>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.592-10A>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470946
  ensembl transcript: ENST00000598615
  gene symbol: NAPA
  hgvsc: ENST00000598615.1:c.250-10A>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-1318T>C
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-1318T>C
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.445-10A>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.562-10A>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.243-10A>G
  variant of: http://identifiers.org/hgnc/7641
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3169
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20346
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14518
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6526
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6248
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2117
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

19-47995394-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47995394
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47995394
    reference: chr 19
allele count: 1
allele frequency: 8.38799510141086e-6
allele num: 119218
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*586-18A>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2904A>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*257-18A>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470946
  ensembl transcript: ENST00000598615
  gene symbol: NAPA
  hgvsc: ENST00000598615.1:c.250-18A>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.592-18A>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.562-18A>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.367-18A>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.243-18A>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-1310T>C
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-1310T>C
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.445-18A>G
  variant of: http://identifiers.org/hgnc/7641
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5831
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19568
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3353
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14259
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3162
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: T
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

19-47995399-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47995399
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47995399
    reference: chr 19
allele count: 2
allele frequency: 1.682850074886828e-5
allele num: 118846
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*586-23G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.243-23G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.367-23G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-1305C>T
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470946
  ensembl transcript: ENST00000598615
  gene symbol: NAPA
  hgvsc: ENST00000598615.1:c.250-23G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-1305C>T
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*257-23G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.445-23G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.592-23G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2899G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.562-23G>A
  variant of: http://identifiers.org/hgnc/7641
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6135
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13802
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18915
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5406
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3143
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1516
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

19-47995407-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47995407
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47995407
    reference: chr 19
allele count: 1
allele frequency: 8.447801037389967e-6
allele num: 118374
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*257-31G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.445-31G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-1297C>T
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.367-31G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470946
  ensembl transcript: ENST00000598615
  gene symbol: NAPA
  hgvsc: ENST00000598615.1:c.250-31G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.592-31G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.243-31G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2891G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-1297C>T
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*586-31G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.562-31G>A
  variant of: http://identifiers.org/hgnc/7641
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3908
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12752
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5147
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5058
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3121
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17510
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5962
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1318
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff

19-47995408-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47995408
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47995408
    reference: chr 19
allele count: 6
allele frequency: 5.066882853668423e-5
allele num: 118416
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2890A>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.445-32A>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.243-32A>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*586-32A>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-1296T>A
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-1296T>A
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.367-32A>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.562-32A>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.592-32A>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*257-32A>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470946
  ensembl transcript: ENST00000598615
  gene symbol: NAPA
  hgvsc: ENST00000598615.1:c.250-32A>T
  variant of: http://identifiers.org/hgnc/7641
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5081
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17203
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5187
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12591
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5947
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4305
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

19-47995409-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47995409
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47995409
    reference: chr 19
allele count: 3
allele frequency: 2.540091104600952e-5
allele num: 118106
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-1295C>G
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.367-33G>C
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*586-33G>C
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470946
  ensembl transcript: ENST00000598615
  gene symbol: NAPA
  hgvsc: ENST00000598615.1:c.250-33G>C
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.445-33G>C
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.243-33G>C
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2889G>C
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-1295C>G
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.562-33G>C
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*257-33G>C
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.592-33G>C
  variant of: http://identifiers.org/hgnc/7641
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12091
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5726
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16204
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5387
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4973
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3109
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5878
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2837
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/19-47995410-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47995410
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47995410
    reference: chr 19
allele count: 1
allele frequency: 8.462527926342156e-6
allele num: 118168
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470946
  ensembl transcript: ENST00000598615
  gene symbol: NAPA
  hgvsc: ENST00000598615.1:c.250-34T>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2888T>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*257-34T>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.592-34T>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-1294A>C
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.243-34T>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-1294A>C
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.445-34T>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.367-34T>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*586-34T>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.562-34T>G
  variant of: http://identifiers.org/hgnc/7641
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3109
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5404
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5070
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11997
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1663
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5689
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16218
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5858
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

19-47995413-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47995413
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47995413
    reference: chr 19
allele count: 1
allele frequency: 8.478312476684641e-6
allele num: 117948
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-1291G>A
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.592-37C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2885C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.445-37C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.562-37C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-1291G>A
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*586-37C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.243-37C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*257-37C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470946
  ensembl transcript: ENST00000598615
  gene symbol: NAPA
  hgvsc: ENST00000598615.1:c.250-37C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.367-37C>T
  variant of: http://identifiers.org/hgnc/7641
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11556
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5452
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15518
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5808
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5187
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1663
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3092
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6662
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

19-47995418-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47995418
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47995418
    reference: chr 19
allele count: 2
allele frequency: 1.70465199529516e-5
allele num: 117326
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*257-42G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-1286C>T
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2880G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.592-42G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.367-42G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*586-42G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470946
  ensembl transcript: ENST00000598615
  gene symbol: NAPA
  hgvsc: ENST00000598615.1:c.250-42G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.243-42G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-1286C>T
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.445-42G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.562-42G>A
  variant of: http://identifiers.org/hgnc/7641
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10522
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13321
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6277
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5421
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8764
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5706
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3073
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13297
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS

19-47995890-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47995890
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47995890
    reference: chr 19
allele count: 1
allele frequency: 6.211180124223603e-4
allele num: 1610
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000602082
  gene symbol: NAPA
  hgvsc: ENST00000602082.1:n.847G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.444+328G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*256+328G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470946
  ensembl transcript: ENST00000598615
  gene symbol: NAPA
  hgvsc: ENST00000598615.1:c.249+328G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*585+328G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.243-514G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.366+328G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2408G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.561+328G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.591+328G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-814C>T
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-814C>T
  variant of: http://identifiers.org/hgnc/44118
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

19-47995900-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47995900
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47995900
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 1628
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-804C>T
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.561+318G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-804C>T
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2398G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*585+318G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.444+318G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.243-524G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.591+318G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000602082
  gene symbol: NAPA
  hgvsc: ENST00000602082.1:n.837G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470946
  ensembl transcript: ENST00000598615
  gene symbol: NAPA
  hgvsc: ENST00000598615.1:c.249+318G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.366+318G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*256+318G>A
  variant of: http://identifiers.org/hgnc/7641
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11744
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

19-47995973-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47995973
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47995973
    reference: chr 19
allele count: 2
allele frequency: 3.084515731030228e-4
allele num: 6484
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.591+245C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.366+245C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.243-597C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-731G>A
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2325C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*256+245C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*585+245C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000602082
  gene symbol: NAPA
  hgvsc: ENST00000602082.1:n.764C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.444+245C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470946
  ensembl transcript: ENST00000598615
  gene symbol: NAPA
  hgvsc: ENST00000598615.1:c.249+245C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.561+245C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-731G>A
  variant of: http://identifiers.org/hgnc/44118
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15302
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: ReadPosRankSum

19-47996010-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47996010
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47996010
    reference: chr 19
allele count: 1687
allele frequency: 1.435256083035562e-1
allele num: 11754
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.561+208G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*256+208G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000602082
  gene symbol: NAPA
  hgvsc: ENST00000602082.1:n.727G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2288G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-694C>T
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.366+208G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.243-634G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-694C>T
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.591+208G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470946
  ensembl transcript: ENST00000598615
  gene symbol: NAPA
  hgvsc: ENST00000598615.1:c.249+208G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*585+208G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.444+208G>A
  variant of: http://identifiers.org/hgnc/7641
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 2576
  bin: 7.5e0
  variant carriers: 645
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 4.25e1
  variant carriers: 148
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 1.25e1
  variant carriers: 141
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.75e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 2.75e1
  variant carriers: 312
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.75e1
  variant carriers: 122
genotype depth: GenotypeDepth
  all individuals: 22947
  bin: 2.5e0
  variant carriers: 740
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 3.25e1
  variant carriers: 265
genotype depth: GenotypeDepth
  all individuals: 3054
  bin: 2.25e1
  variant carriers: 224
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 3.75e1
  variant carriers: 174
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
num of homozygotes: 127
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

19-47996011-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47996011
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47996011
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 11840
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000602082
  gene symbol: NAPA
  hgvsc: ENST00000602082.1:n.726C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.444+207C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-693G>A
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*256+207C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-693G>A
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.591+207C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.366+207C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2287C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.243-635C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.561+207C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470946
  ensembl transcript: ENST00000598615
  gene symbol: NAPA
  hgvsc: ENST00000598615.1:c.249+207C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*585+207C>T
  variant of: http://identifiers.org/hgnc/7641
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25666
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3203
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD

19-47996016-T-TGGCAC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47996016
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47996021
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 12016
alternate allele: TGGCAC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.591+197_591+201dupGTGCC
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470946
  ensembl transcript: ENST00000598615
  gene symbol: NAPA
  hgvsc: ENST00000598615.1:c.249+197_249+201dupGTGCC
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.561+197_561+201dupGTGCC
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000602082
  gene symbol: NAPA
  hgvsc: ENST00000602082.1:n.716_720dupGTGCC
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2277_2281dupGTGCC
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*585+197_*585+201dupGTGCC
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.243-645_243-641dupGTGCC
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.444+197_444+201dupGTGCC
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.366+197_366+201dupGTGCC
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-683_244-679dupCGGCA
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*256+197_*256+201dupGTGCC
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-683_218-679dupCGGCA
  variant of: http://identifiers.org/hgnc/44118
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27619
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3255
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2389
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
population: Latino
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum

19-47996021-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47996021
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47996021
    reference: chr 19
allele count: 1
allele frequency: 8.21827744904668e-5
allele num: 12168
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*585+197G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470946
  ensembl transcript: ENST00000598615
  gene symbol: NAPA
  hgvsc: ENST00000598615.1:c.249+197G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.366+197G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.591+197G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-683C>T
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2277G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-683C>T
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000602082
  gene symbol: NAPA
  hgvsc: ENST00000602082.1:n.716G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.561+197G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*256+197G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.444+197G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.243-645G>A
  variant of: http://identifiers.org/hgnc/7641
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29427
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2590
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

19-47996022-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47996022
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47996022
    reference: chr 19
allele count: 8
allele frequency: 6.545573555882834e-4
allele num: 12222
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.243-646C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.561+196C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.591+196C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.366+196C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000602082
  gene symbol: NAPA
  hgvsc: ENST00000602082.1:n.715C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.444+196C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*585+196C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470946
  ensembl transcript: ENST00000598615
  gene symbol: NAPA
  hgvsc: ENST00000598615.1:c.249+196C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2276C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-682G>A
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-682G>A
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*256+196C>T
  variant of: http://identifiers.org/hgnc/7641
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29931
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2671
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3335
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum

19-47996022-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47996022
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47996022
    reference: chr 19
allele count: 1
allele frequency: 8.181966944853542e-5
allele num: 12222
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.444+196C>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.366+196C>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.591+196C>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.561+196C>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2276C>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-682G>C
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-682G>C
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*256+196C>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.243-646C>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000602082
  gene symbol: NAPA
  hgvsc: ENST00000602082.1:n.715C>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*585+196C>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470946
  ensembl transcript: ENST00000598615
  gene symbol: NAPA
  hgvsc: ENST00000598615.1:c.249+196C>G
  variant of: http://identifiers.org/hgnc/7641
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29931
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3335
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2671
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum

19-47996032-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47996032
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47996032
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 12452
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-672C>T
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2266G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.444+186G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000602082
  gene symbol: NAPA
  hgvsc: ENST00000602082.1:n.705G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470946
  ensembl transcript: ENST00000598615
  gene symbol: NAPA
  hgvsc: ENST00000598615.1:c.249+186G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.561+186G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-672C>T
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*256+186G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.366+186G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.242+641G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*585+186G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.591+186G>A
  variant of: http://identifiers.org/hgnc/7641
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33667
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3396
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/19-47996045-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47996045
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47996045
    reference: chr 19
allele count: 1
allele frequency: 7.737542556484061e-5
allele num: 12924
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.444+173G>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*585+173G>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*256+173G>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.591+173G>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2253G>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000602082
  gene symbol: NAPA
  hgvsc: ENST00000602082.1:n.692G>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470946
  ensembl transcript: ENST00000598615
  gene symbol: NAPA
  hgvsc: ENST00000598615.1:c.249+173G>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.561+173G>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.242+628G>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-659C>A
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-659C>A
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.366+173G>T
  variant of: http://identifiers.org/hgnc/7641
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3442
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6623
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36829
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1850
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum

19-47996070-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47996070
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47996070
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 15744
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.366+148C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.242+603C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2228C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-634G>A
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470946
  ensembl transcript: ENST00000598615
  gene symbol: NAPA
  hgvsc: ENST00000598615.1:c.249+148C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.444+148C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.591+148C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-634G>A
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*256+148C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000602082
  gene symbol: NAPA
  hgvsc: ENST00000602082.1:n.667C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.561+148C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*585+148C>T
  variant of: http://identifiers.org/hgnc/7641
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 3333
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18992
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30305
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1973
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP

19-47996070-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47996070
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47996070
    reference: chr 19
allele count: 1
allele frequency: 6.351626016260163e-5
allele num: 15744
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470946
  ensembl transcript: ENST00000598615
  gene symbol: NAPA
  hgvsc: ENST00000598615.1:c.249+148C>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*585+148C>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-634G>C
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.366+148C>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.242+603C>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000602082
  gene symbol: NAPA
  hgvsc: ENST00000602082.1:n.667C>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2228C>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*256+148C>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.561+148C>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-634G>C
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.444+148C>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.591+148C>G
  variant of: http://identifiers.org/hgnc/7641
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1973
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18992
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3333
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30305
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

19-47996071-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47996071
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47996071
    reference: chr 19
allele count: 9
allele frequency: 5.661801711122295e-4
allele num: 15896
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000602082
  gene symbol: NAPA
  hgvsc: ENST00000602082.1:n.666C>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-633G>C
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*585+147C>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470946
  ensembl transcript: ENST00000598615
  gene symbol: NAPA
  hgvsc: ENST00000598615.1:c.249+147C>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.366+147C>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2227C>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-633G>C
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*256+147C>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.591+147C>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.444+147C>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.561+147C>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.242+602C>G
  variant of: http://identifiers.org/hgnc/7641
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3344
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29801
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19664
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 1
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum

19-47996073-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47996073
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47996073
    reference: chr 19
allele count: 1
allele frequency: 6.121449559255632e-5
allele num: 16336
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.242+600C>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-631G>T
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*256+145C>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470946
  ensembl transcript: ENST00000598615
  gene symbol: NAPA
  hgvsc: ENST00000598615.1:c.249+145C>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.366+145C>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*585+145C>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.561+145C>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2225C>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.444+145C>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000602082
  gene symbol: NAPA
  hgvsc: ENST00000602082.1:n.664C>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-631G>T
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.591+145C>A
  variant of: http://identifiers.org/hgnc/7641
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28768
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1977
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20865
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3357
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

19-47996076-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47996076
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47996075
    reference: chr 19
allele count: 7
allele frequency: 4.161712247324613e-4
allele num: 16820
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2221delA
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*585+141delA
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.561+141delA
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.591+141delA
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.242+596delA
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.366+141delA
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000602082
  gene symbol: NAPA
  hgvsc: ENST00000602082.1:n.660delA
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*256+141delA
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.444+141delA
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470946
  ensembl transcript: ENST00000598615
  gene symbol: NAPA
  hgvsc: ENST00000598615.1:c.249+141delA
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-627delT
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-627delT
  variant of: http://identifiers.org/hgnc/44118
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26712
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: AT
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

19-47996080-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47996080
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47996080
    reference: chr 19
allele count: 1
allele frequency: 5.609154139555755e-5
allele num: 17828
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000602082
  gene symbol: NAPA
  hgvsc: ENST00000602082.1:n.657G>C
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.366+138G>C
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.242+593G>C
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.444+138G>C
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-624C>G
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.591+138G>C
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2218G>C
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*256+138G>C
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.561+138G>C
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*585+138G>C
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-624C>G
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470946
  ensembl transcript: ENST00000598615
  gene symbol: NAPA
  hgvsc: ENST00000598615.1:c.249+138G>C
  variant of: http://identifiers.org/hgnc/7641
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1992
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3511
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2640
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23311
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

19-47996083-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47996083
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47996083
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 18800
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.561+135C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.242+590C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470946
  ensembl transcript: ENST00000598615
  gene symbol: NAPA
  hgvsc: ENST00000598615.1:c.249+135C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.444+135C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000602082
  gene symbol: NAPA
  hgvsc: ENST00000602082.1:n.654C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-621G>A
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.366+135C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-621G>A
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2215C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*256+135C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*585+135C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.591+135C>T
  variant of: http://identifiers.org/hgnc/7641
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28349
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2957
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3583
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21300
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

19-47996088-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47996088
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47996088
    reference: chr 19
allele count: 1
allele frequency: 4.783315794508753e-5
allele num: 20906
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*256+130C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*585+130C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.561+130C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.242+585C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.591+130C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.366+130C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-616G>A
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000602082
  gene symbol: NAPA
  hgvsc: ENST00000602082.1:n.649C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-616G>A
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2210C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.444+130C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470946
  ensembl transcript: ENST00000598615
  gene symbol: NAPA
  hgvsc: ENST00000598615.1:c.249+130C>T
  variant of: http://identifiers.org/hgnc/7641
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3743
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2035
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3814
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31800
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16913
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

19-47996092-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47996092
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47996092
    reference: chr 19
allele count: 2
allele frequency: 8.803591865481116e-5
allele num: 22718
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*256+126A>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.242+581A>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000602082
  gene symbol: NAPA
  hgvsc: ENST00000602082.1:n.645A>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*585+126A>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.591+126A>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.366+126A>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.561+126A>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2206A>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-612T>A
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-612T>A
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470946
  ensembl transcript: ENST00000598615
  gene symbol: NAPA
  hgvsc: ENST00000598615.1:c.249+126A>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.444+126A>T
  variant of: http://identifiers.org/hgnc/7641
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14218
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4113
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33649
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4318
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

19-47996094-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47996094
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47996094
    reference: chr 19
allele count: 1
allele frequency: 4.23405876873571e-5
allele num: 23618
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.366+124A>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000602082
  gene symbol: NAPA
  hgvsc: ENST00000602082.1:n.643A>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*585+124A>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.591+124A>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-610T>C
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2204A>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.242+579A>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*256+124A>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.561+124A>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.444+124A>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470946
  ensembl transcript: ENST00000598615
  gene symbol: NAPA
  hgvsc: ENST00000598615.1:c.249+124A>G
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-610T>C
  variant of: http://identifiers.org/hgnc/44118
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4615
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12965
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2104
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34347
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4299
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD

19-47996095-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47996095
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47996095
    reference: chr 19
allele count: 1
allele frequency: 4.162157662532257e-5
allele num: 24026
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.242+578G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.561+123G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*585+123G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2203G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000602082
  gene symbol: NAPA
  hgvsc: ENST00000602082.1:n.642G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-609C>T
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.366+123G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.444+123G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470946
  ensembl transcript: ENST00000598615
  gene symbol: NAPA
  hgvsc: ENST00000598615.1:c.249+123G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.591+123G>A
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-609C>T
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*256+123G>A
  variant of: http://identifiers.org/hgnc/7641
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2153
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11922
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4375
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34692
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 5006
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: QD

19-47996096-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47996096
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 47996096
    reference: chr 19
allele count: 2
allele frequency: 7.474400179385604e-5
allele num: 26758
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000263354
  ensembl transcript: ENST00000263354
  gene symbol: NAPA
  hgvsc: ENST00000263354.3:c.561+122C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000593905
  gene symbol: NAPA
  hgvsc: ENST00000593905.1:n.366+122C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000597778
  gene symbol: NAPA
  hgvsc: ENST00000597778.1:n.2202C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105402
  ensembl transcript: ENST00000602082
  gene symbol: NAPA
  hgvsc: ENST00000602082.1:n.641C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000593284
  gene symbol: NAPA-AS1
  hgvsc: ENST00000593284.1:n.244-608G>A
  variant of: http://identifiers.org/hgnc/44118
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470665
  ensembl transcript: ENST00000601208
  gene symbol: NAPA
  hgvsc: ENST00000601208.1:c.*585+122C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000472667
  ensembl transcript: ENST00000593761
  gene symbol: NAPA
  hgvsc: ENST00000593761.1:c.591+122C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470654
  ensembl transcript: ENST00000594001
  gene symbol: NAPA
  hgvsc: ENST00000594001.1:c.*256+122C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000470946
  ensembl transcript: ENST00000598615
  gene symbol: NAPA
  hgvsc: ENST00000598615.1:c.249+122C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471261
  ensembl transcript: ENST00000594155
  gene symbol: NAPA
  hgvsc: ENST00000594155.1:c.242+577C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105402
  ensembl protein: ENSP00000471520
  ensembl transcript: ENST00000595227
  gene symbol: NAPA
  hgvsc: ENST00000595227.1:c.444+122C>T
  variant of: http://identifiers.org/hgnc/7641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268061
  ensembl transcript: ENST00000594367
  gene symbol: NAPA-AS1
  hgvsc: ENST00000594367.1:n.218-608G>A
  variant of: http://identifiers.org/hgnc/44118
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35618
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4809
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 148
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25864
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1980
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9676
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1359
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3074
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 797
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 440
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4426
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8189
bin: 9.75e1
variant carriers: 266

GenotypeQuality
all individuals: 174
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3588
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.730702665282105e-4
allele num: 11556
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.514233797698365e-4
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.270648030495553e-4
allele num: 15740
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 16
allele frequency: 2.415458937198068e-4
allele num: 66240
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

East Asian
type: Population
allele count: 244
allele frequency: 2.827346465816918e-2
allele num: 8630
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.91e0

DP
type: SiteQuality
SIO_000300: 2.009216e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.95e0

MQRankSum
type: SiteQuality
SIO_000300: 3.51e-1

QD
type: SiteQuality
SIO_000300: 1.371e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.65e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

GenotypeQuality
all individuals: 103
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 735
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7952
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 263
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3617
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1983
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9771
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26332
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1366
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3084
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4449
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.653513326410523e-5
allele num: 11556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15782
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.525159888982744e-5
allele num: 66296
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 2.000399e6

VQSLOD
type: SiteQuality
SIO_000300: 1.98e0

QD
type: SiteQuality
SIO_000300: 1.289e1

MQ
type: SiteQuality
SIO_000300: 5.963e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.34e-1

FS
type: SiteQuality
SIO_000300: 3.974e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.31e-1

GenotypeQuality
all individuals: 9759
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3607
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1981
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7948
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3076
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4431
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26366
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1365
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15772
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.016682252858306e-5
allele num: 66298
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.75e0

FS
type: SiteQuality
SIO_000300: 8.02e-1

DP
type: SiteQuality
SIO_000300: 2.002218e6

VQSLOD
type: SiteQuality
SIO_000300: 9.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.927e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e0

MQ
type: SiteQuality
SIO_000300: 5.94e1

QD
type: SiteQuality
SIO_000300: 1.316e1

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1981
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1368
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3089
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9809
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26748
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7949
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3619
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4440
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.538294536244121e-5
allele num: 66328
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.75e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.7e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 2.00525e6

FS
type: SiteQuality
SIO_000300: 2.058e0

MQ
type: SiteQuality
SIO_000300: 5.94e1

MQRankSum
type: SiteQuality
SIO_000300: -2.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.26e-1

QD
type: SiteQuality
SIO_000300: 1.337e1

VQSLOD
type: SiteQuality
SIO_000300: 1.85e0

GenotypeQuality
all individuals: 1983
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4445
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1366
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9826
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3612
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3085
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66378
num of homozygotes: 0

Latino
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allele frequency: 2.594258042199931e-4
allele num: 11564
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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East Asian
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ReadPosRankSum
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SIO_000300: 1.55e0

MQRankSum
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DP
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QD
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FS
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SIO_000300: 6.98e-1

ClippingRankSum
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SIO_000300: -8.0e-2

MQ
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InbreedingCoeff
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SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.63e0

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.506432466632521e-5
allele num: 66382
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15978
num of homozygotes: 0

Other
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BaseQRankSum
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SIO_000300: -1.617e0

MQRankSum
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SIO_000300: -1.528e0

DP
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MQ
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VQSLOD
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FS
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SIO_000300: 4.462e0

ReadPosRankSum
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SIO_000300: 9.8e-2

InbreedingCoeff
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SIO_000300: 2.0e-4

QD
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SIO_000300: 1.461e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.74e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Latino
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allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66540
num of homozygotes: 0

South Asian
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allele num: 16270
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MQ
type: SiteQuality
SIO_000300: 5.971e1

MQRankSum
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SIO_000300: -3.12e-1

QD
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BaseQRankSum
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FS
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DP
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ClippingRankSum
type: SiteQuality
SIO_000300: 3.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.9e-1

VQSLOD
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SIO_000300: 1.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeDepth
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.506263706552107e-5
allele num: 66574
num of homozygotes: 0

African
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allele count: 0
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num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.967e1

QD
type: SiteQuality
SIO_000300: 9.34e0

BaseQRankSum
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ReadPosRankSum
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DP
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SIO_000300: 2.020403e6

MQRankSum
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FS
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -1.0e-4

VQSLOD
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SIO_000300: 1.59e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.75e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 27989
bin: 6.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
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allele num: 66584
num of homozygotes: 0

Other
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num of homozygotes: 0

East Asian
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MQRankSum
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FS
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DP
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VQSLOD
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MQ
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QD
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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allele num: 8652
num of homozygotes: 0

South Asian
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European (Finnish)
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Latino
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African
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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FS
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VQSLOD
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ClippingRankSum
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DP
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ReadPosRankSum
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QD
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MQ
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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num of homozygotes: 0

African
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South Asian
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East Asian
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Latino
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European (Non-Finnish)
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Other
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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FS
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DP
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MQ
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BaseQRankSum
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QD
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ReadPosRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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African
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South Asian
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Latino
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allele frequency: 0.0e0
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QD
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ReadPosRankSum
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InbreedingCoeff
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SIO_000300: -1.0e-4

MQRankSum
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SIO_000300: 1.25e0

ClippingRankSum
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MQ
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VQSLOD
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SIO_000300: -1.214e0

FS
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SIO_000300: 2.325e0

BaseQRankSum
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SIO_000300: -3.46e0

DP
type: SiteQuality
SIO_000300: 2.02209e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500870504892838e-5
allele num: 66628
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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Other
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ClippingRankSum
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DP
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BaseQRankSum
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ReadPosRankSum
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FS
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SIO_000300: 5.032e0

MQRankSum
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InbreedingCoeff
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VQSLOD
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SIO_000300: -2.62e-2

QD
type: SiteQuality
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MQ
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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num of homozygotes: 0

South Asian
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Latino
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allele frequency: 1.728907330567082e-4
allele num: 11568
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Other
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allele frequency: 0.0e0
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East Asian
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allele num: 8652
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BaseQRankSum
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MQ
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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MQRankSum
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FS
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SIO_000300: 2.429e0

DP
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66632
num of homozygotes: 0

Latino
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allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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Other
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allele count: 0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.168e0

BaseQRankSum
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VQSLOD
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InbreedingCoeff
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MQRankSum
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QD
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MQ
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SIO_000300: 5.984e1

ClippingRankSum
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SIO_000300: -2.25e-1

ReadPosRankSum
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DP
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SIO_000300: 2.02245e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.001110410852015e-5
allele num: 66642
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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Other
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MQRankSum
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ClippingRankSum
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DP
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VQSLOD
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QD
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MQ
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FS
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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African
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allele num: 10394
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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num of homozygotes: 0

Other
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European (Finnish)
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MQRankSum
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QD
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VQSLOD
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ReadPosRankSum
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FS
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InbreedingCoeff
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MQ
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BaseQRankSum
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele num: 11568
num of homozygotes: 0

East Asian
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African
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European (Finnish)
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European (Non-Finnish)
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Other
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South Asian
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MQ
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ClippingRankSum
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ReadPosRankSum
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QD
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FS
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VQSLOD
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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European (Non-Finnish)
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European (Finnish)
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African
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Other
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East Asian
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South Asian
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MQRankSum
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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FS
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MQ
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BaseQRankSum
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QD
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.001380635092142e-5
allele num: 66636
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 8.516851198442633e-4
allele num: 16438
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ReadPosRankSum
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BaseQRankSum
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QD
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DP
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MQRankSum
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VQSLOD
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MQ
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InbreedingCoeff
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SIO_000300: -2.0e-4

FS
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SIO_000300: 0.0e0

ClippingRankSum
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SIO_000300: 4.22e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

South Asian
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allele frequency: 6.084945843981989e-5
allele num: 16434
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66638
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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FS
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ClippingRankSum
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BaseQRankSum
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MQ
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QD
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DP
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SIO_000300: 2.022174e6

ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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VQSLOD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.00147072065312e-5
allele num: 66634
num of homozygotes: 0

Other
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allele count: 0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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VQSLOD
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ReadPosRankSum
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FS
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DP
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ClippingRankSum
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MQ
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QD
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SIO_000300: 1.712e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.004743747560573e-5
allele num: 66614
num of homozygotes: 0

South Asian
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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DP
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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MQ
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FS
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QD
type: SiteQuality
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VQSLOD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 906
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66602
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African
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European (Finnish)
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allele frequency: 4.541326067211626e-4
allele num: 6606
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South Asian
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FS
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MQRankSum
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InbreedingCoeff
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MQ
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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Other
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East Asian
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allele num: 8652
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Latino
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South Asian
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InbreedingCoeff
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ReadPosRankSum
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QD
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ClippingRankSum
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MQ
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DP
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BaseQRankSum
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FS
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MQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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num of homozygotes: 0

Latino
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Other
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South Asian
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East Asian
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African
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European (Non-Finnish)
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ClippingRankSum
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QD
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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FS
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DP
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VQSLOD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
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num of homozygotes: 0

East Asian
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Other
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Latino
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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South Asian
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African
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DP
type: SiteQuality
SIO_000300: 2.019348e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.89e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.7e-2

MQRankSum
type: SiteQuality
SIO_000300: -7.46e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.191e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 6.5e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3623
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66570
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.622786759045419e-5
allele num: 10392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

QD
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SIO_000300: 1.145e1

DP
type: SiteQuality
SIO_000300: 2.018932e6

BaseQRankSum
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SIO_000300: -6.05e-1

FS
type: SiteQuality
SIO_000300: 8.688000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 6.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.05e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.384e0

GenotypeQuality
all individuals: 46
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16362
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.570000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.24e-1

QD
type: SiteQuality
SIO_000300: 1.254e1

MQRankSum
type: SiteQuality
SIO_000300: 5.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.62e0

FS
type: SiteQuality
SIO_000300: 1.544e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.958e1

DP
type: SiteQuality
SIO_000300: 2.018741e6

GenotypeQuality
all individuals: 1362
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1982
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GenotypeQuality
all individuals: 4432
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16322
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502629601803156e-5
allele num: 66550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.62e-1

DP
type: SiteQuality
SIO_000300: 2.017781e6

FS
type: SiteQuality
SIO_000300: 3.871e0

BaseQRankSum
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SIO_000300: -2.328e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.07e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

QD
type: SiteQuality
SIO_000300: 1.204e1

GenotypeQuality
all individuals: 27470
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16232
num of homozygotes: 0

European (Non-Finnish)
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allele count: 5
allele frequency: 7.520832706597275e-5
allele num: 66482
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Finnish)
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allele count: 2
allele frequency: 3.036744609778318e-4
allele num: 6586
num of homozygotes: 0

VQSLOD
type: SiteQuality
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QD
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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DP
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.14e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

GenotypeQuality
all individuals: 50
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variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.227425582264292e-5
allele num: 16058
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66372
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.311604253351826e-4
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.183e1

InbreedingCoeff
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DP
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FS
type: SiteQuality
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MQ
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VQSLOD
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MQRankSum
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66364
num of homozygotes: 0

Latino
type: Population
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allele frequency: 8.647526807333103e-5
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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DP
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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MQ
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VQSLOD
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QD
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15780
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.643201542912247e-5
allele num: 10370
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66224
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.952e1

MQRankSum
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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FS
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QD
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ClippingRankSum
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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num of homozygotes: 0

East Asian
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African
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Latino
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Other
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European (Finnish)
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South Asian
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InbreedingCoeff
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ClippingRankSum
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FS
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MQ
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BaseQRankSum
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VQSLOD
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MQRankSum
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QD
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ReadPosRankSum
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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Other
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South Asian
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Latino
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66096
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East Asian
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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FS
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DP
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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European (Non-Finnish)
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Other
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European (Finnish)
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South Asian
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East Asian
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InbreedingCoeff
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FS
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QD
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ClippingRankSum
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DP
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MQ
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VQSLOD
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 65948
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Latino
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East Asian
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Other
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European (Finnish)
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South Asian
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FS
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MQ
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ClippingRankSum
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VQSLOD
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DP
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QD
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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Latino
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East Asian
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allele num: 8614
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European (Finnish)
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African
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Other
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VQSLOD
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ClippingRankSum
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DP
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MQ
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QD
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FS
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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European (Non-Finnish)
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South Asian
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European (Finnish)
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East Asian
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ClippingRankSum
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MQ
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QD
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MQRankSum
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ReadPosRankSum
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FS
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VQSLOD
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BaseQRankSum
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DP
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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South Asian
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Latino
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African
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East Asian
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Other
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BaseQRankSum
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DP
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FS
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InbreedingCoeff
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QD
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VQSLOD
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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European (Finnish)
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African
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allele count: 3
allele frequency: 2.912621359223301e-4
allele num: 10300
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65544
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.98e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.2e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

FS
type: SiteQuality
SIO_000300: 1.709e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.01e-1

QD
type: SiteQuality
SIO_000300: 1.551e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.04e0

DP
type: SiteQuality
SIO_000300: 1.856344e6

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.75219446320054e-5
allele num: 14810
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -5.91e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.253e0

VQSLOD
type: SiteQuality
SIO_000300: 1.85e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.97e-1

ReadPosRankSum
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SIO_000300: 8.87e-1

DP
type: SiteQuality
SIO_000300: 1.854765e6

QD
type: SiteQuality
SIO_000300: 1.597e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1303
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.791632708503124e-5
allele num: 14724
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65484
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.17e0

MQRankSum
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SIO_000300: -1.025e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

DP
type: SiteQuality
SIO_000300: 1.839537e6

QD
type: SiteQuality
SIO_000300: 1.326e1

VQSLOD
type: SiteQuality
SIO_000300: -1.247e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.269e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.684e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3555
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6496
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14416
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10268
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.064664419246093e-5
allele num: 65260
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.89e0

QD
type: SiteQuality
SIO_000300: 1.417e1

MQRankSum
type: SiteQuality
SIO_000300: 1.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.639999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.802783e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.065e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeDepth
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 57
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 23
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 30
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 12
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GenotypeQuality
all individuals: 54
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 368
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 90
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.351351351351351e-2
allele num: 74
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 158
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.616e0

MQ
type: SiteQuality
SIO_000300: 5.887e1

MQRankSum
type: SiteQuality
SIO_000300: 8.28e-1

QD
type: SiteQuality
SIO_000300: 1.141e1

DP
type: SiteQuality
SIO_000300: 5.204e4

FS
type: SiteQuality
SIO_000300: 1.389e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.649999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.023e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.584e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.3e-2

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 15
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GenotypeQuality
all individuals: 10
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 72
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 174
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 90
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 910
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.23e-1

ClippingRankSum
type: SiteQuality
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FS
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MQ
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SIO_000300: 6.0e1

QD
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MQRankSum
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SIO_000300: 4.06e-1

InbreedingCoeff
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SIO_000300: -9.58e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

DP
type: SiteQuality
SIO_000300: 5.4419e4

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1423
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 136
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2068
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 4.291845493562232e-3
allele num: 466
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.81e0

ClippingRankSum
type: SiteQuality
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VQSLOD
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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MQ
type: SiteQuality
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QD
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.25e-1

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1529
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GenotypeQuality
all individuals: 349
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GenotypeQuality
all individuals: 57
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GenotypeQuality
all individuals: 116
bin: 5.25e1
variant carriers: 41

GenotypeQuality
all individuals: 107
bin: 5.75e1
variant carriers: 54

South Asian
type: Population
allele count: 1100
allele frequency: 1.557632398753894e-1
allele num: 7062
num of homozygotes: 89

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.666666666666667e-1
allele num: 6
num of homozygotes: 0

East Asian
type: Population
allele count: 53
allele frequency: 2.12e-1
allele num: 250
num of homozygotes: 4

Other
type: Population
allele count: 15
allele frequency: 1.209677419354839e-1
allele num: 124
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 365
allele frequency: 1.042261564820103e-1
allele num: 3502
num of homozygotes: 19

African
type: Population
allele count: 105
allele frequency: 1.744186046511628e-1
allele num: 602
num of homozygotes: 8

Latino
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allele count: 48
allele frequency: 2.307692307692308e-1
allele num: 208
num of homozygotes: 6

MQRankSum
type: SiteQuality
SIO_000300: 3.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.76e-2

BaseQRankSum
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FS
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MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
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ClippingRankSum
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ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

DP
type: SiteQuality
SIO_000300: 2.19915e5

QD
type: SiteQuality
SIO_000300: 1.5e1

GenotypeDepth
all individuals: 6
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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num of homozygotes: 0

Other
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num of homozygotes: 0

Latino
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East Asian
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FS
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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MQ
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DP
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QD
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BaseQRankSum
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SIO_000300: 7.27e-1

MQRankSum
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SIO_000300: -7.27e-1

VQSLOD
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SIO_000300: -1.966e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3584
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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South Asian
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allele frequency: 0.0e0
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Latino
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DP
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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FS
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BaseQRankSum
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QD
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SIO_000300: 1.639e1

MQ
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SIO_000300: 3.077e1

MQRankSum
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SIO_000300: 7.27e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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European (Finnish)
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Other
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East Asian
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DP
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VQSLOD
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ClippingRankSum
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FS
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MQ
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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SIO_000300: 5.19e-1

QD
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SIO_000300: 1.407e1

GenotypeDepth
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 8

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 3668
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Other
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ReadPosRankSum
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SIO_000300: 6.919999999999999e-1

InbreedingCoeff
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VQSLOD
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DP
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MQ
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FS
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QD
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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SIO_000300: 8.0e-1

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 1.362397820163488e-4
allele num: 7340
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3668
num of homozygotes: 0

European (Finnish)
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East Asian
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allele frequency: 0.0e0
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Latino
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Other
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MQ
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SIO_000300: 5.953e1

InbreedingCoeff
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VQSLOD
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FS
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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QD
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DP
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BaseQRankSum
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SIO_000300: 8.7e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 256
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 3764
num of homozygotes: 0

Latino
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South Asian
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African
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Other
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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DP
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QD
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FS
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ClippingRankSum
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MQ
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VQSLOD
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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East Asian
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African
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Other
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Latino
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European (Non-Finnish)
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allele num: 3996
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InbreedingCoeff
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FS
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QD
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MQ
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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DP
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ReadPosRankSum
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MQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 5646
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7842
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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Other
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ReadPosRankSum
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SIO_000300: 7.27e-1

InbreedingCoeff
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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QD
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VQSLOD
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FS
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MQ
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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African
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European (Non-Finnish)
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East Asian
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Latino
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InbreedingCoeff
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QD
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MQ
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ClippingRankSum
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FS
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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VQSLOD
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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Other
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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European (Non-Finnish)
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South Asian
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East Asian
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QD
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FS
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ReadPosRankSum
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MQ
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InbreedingCoeff
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DP
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ClippingRankSum
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MQRankSum
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VQSLOD
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BaseQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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European (Non-Finnish)
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East Asian
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South Asian
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Latino
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African
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InbreedingCoeff
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ClippingRankSum
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MQ
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FS
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ReadPosRankSum
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BaseQRankSum
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DP
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MQRankSum
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VQSLOD
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 6284
num of homozygotes: 0

African
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Latino
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South Asian
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allele frequency: 8.791760864104496e-4
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European (Finnish)
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East Asian
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Other
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MQ
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BaseQRankSum
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DP
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QD
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ReadPosRankSum
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FS
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VQSLOD
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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num of homozygotes: 0

Other
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African
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European (Finnish)
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Latino
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South Asian
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East Asian
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FS
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QD
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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DP
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VQSLOD
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BaseQRankSum
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MQ
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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Latino
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African
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European (Finnish)
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East Asian
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South Asian
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European (Non-Finnish)
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InbreedingCoeff
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FS
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QD
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ReadPosRankSum
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MQ
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

European (Non-Finnish)
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Latino
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allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.200768491834774e-4
allele num: 8328
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.26e0

QD
type: SiteQuality
SIO_000300: 5.35e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e0

VQSLOD
type: SiteQuality
SIO_000300: -3.081e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.99e0

MQ
type: SiteQuality
SIO_000300: 5.925e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.75e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.072e0

DP
type: SiteQuality
SIO_000300: 4.92219e5

GenotypeDepth
all individuals: 1
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30820
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 70
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1958
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1705
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 679
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1391
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13919
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1129
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5207
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1454
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 639
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.183151916706105e-4
allele num: 8452
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1024
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 5.720823798627002e-4
allele num: 1748
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.1779e5

VQSLOD
type: SiteQuality
SIO_000300: 3.4e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.03e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.37e-2

QD
type: SiteQuality
SIO_000300: 1.194e1

GenotypeDepth
all individuals: 0
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1773
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12767
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 693
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1514
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 181
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1902
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1074
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5309
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1548
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 680
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.048218029350105e-3
allele num: 954
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1838
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10296
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1094
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 688
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.45e0

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.27e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.76e0

DP
type: SiteQuality
SIO_000300: 5.30733e5

QD
type: SiteQuality
SIO_000300: 9.779999999999999e0

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1790
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1798
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2098
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 19
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1072
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 320
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31961
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 710
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11827
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 644
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 114
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1558
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 168
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5251
bin: 6.25e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.0351966873706e-3
allele num: 966
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1828
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 726
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1144
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.28e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.84e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 5.44187e5

QD
type: SiteQuality
SIO_000300: 1.254e1