16-67380360-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67380360
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67380360
    reference: chr 16
allele count: 3
allele frequency: 2.552887315553891e-5
allele num: 117514
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.241+9T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-114+9T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-17133T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.461+9T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000566558
  gene symbol: LRRC36
  hgvsc: ENST00000566558.1:n.389+9T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-114+9T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.371+9T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*146+9T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.391+9T>C
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2681
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15081
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7608
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7223
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4543
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12443
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

16-67380363-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67380363
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67380363
    reference: chr 16
allele count: 2
allele frequency: 1.707038118161179e-5
allele num: 117162
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-17130C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.241+12C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.391+12C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.461+12C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*146+12C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-114+12C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000566558
  gene symbol: LRRC36
  hgvsc: ENST00000566558.1:n.389+12C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-114+12C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.371+12C>T
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 12424
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4540
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7606
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14982
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2812
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7037
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3185
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2088
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD

16-67380364-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67380364
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67380364
    reference: chr 16
allele count: 5
allele frequency: 4.266794101583834e-5
allele num: 117184
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.461+13T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.241+13T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000566558
  gene symbol: LRRC36
  hgvsc: ENST00000566558.1:n.389+13T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.371+13T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-17129T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.391+13T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*146+13T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-114+13T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-114+13T>C
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7048
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7604
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2824
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14982
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12414
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4540
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4269
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3170
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

16-67380366-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67380366
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67380366
    reference: chr 16
allele count: 1
allele frequency: 8.550077805708033e-6
allele num: 116958
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.241+15C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-17127C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*146+15C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000566558
  gene symbol: LRRC36
  hgvsc: ENST00000566558.1:n.389+15C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-114+15C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-114+15C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.461+15C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.391+15C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.371+15C>T
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6934
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7604
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12407
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2891
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14915
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4539
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13830
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16680
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

16-67380378-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67380378
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67380378
    reference: chr 16
allele count: 1
allele frequency: 8.637368711995577e-6
allele num: 115776
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*146+27C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000566558
  gene symbol: LRRC36
  hgvsc: ENST00000566558.1:n.389+27C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-114+27C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.391+27C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-17115C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.241+27C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.461+27C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-114+27C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.371+27C>T
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4534
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12224
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14567
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6377
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7564
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 762
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/16-67380381-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67380381
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67380381
    reference: chr 16
allele count: 3
allele frequency: 2.599112836151927e-5
allele num: 115424
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*146+30C>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-114+30C>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000566558
  gene symbol: LRRC36
  hgvsc: ENST00000566558.1:n.389+30C>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.461+30C>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-114+30C>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-17112C>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.241+30C>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.391+30C>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.371+30C>A
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3249
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2377
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7539
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12124
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6179
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2345
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4530
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14313
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4237
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3171
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
reference allele: C
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/16-67380399-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67380399
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67380399
    reference: chr 16
allele count: 1
allele frequency: 8.780556336049453e-6
allele num: 113888
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.371+48C>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-114+48C>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*146+48C>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-114+48C>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-17094C>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.461+48C>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000566558
  gene symbol: LRRC36
  hgvsc: ENST00000566558.1:n.389+48C>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.241+48C>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.391+48C>A
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2952
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11205
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3688
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2914
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7965
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2370
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7398
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4511
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10870
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13801
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2341
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1007
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9351
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 787
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff

16-67380401-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67380401
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67380401
    reference: chr 16
allele count: 1
allele frequency: 8.792909397861565e-6
allele num: 113728
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-114+50G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.461+50G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.371+50G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-17092G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-114+50G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.241+50G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*146+50G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.391+50G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000566558
  gene symbol: LRRC36
  hgvsc: ENST00000566558.1:n.389+50G>C
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7379
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10630
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4503
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2370
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11034
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2860
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3676
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8399
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3017
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 783
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1079
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7994
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

16-67381322-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67381322
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67381322
    reference: chr 16
allele count: 1
allele frequency: 8.555344523723971e-6
allele num: 116886
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.-48A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.-48A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.242-76A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.-48A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*147-76A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.392-76A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.372-76A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.-48A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.-48A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456517
  ensembl transcript: ENST00000561821
  gene symbol: LRRC36
  hgvsc: ENST00000561821.1:c.-48A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.-48A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.462-76A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454309
  ensembl transcript: ENST00000569552
  gene symbol: LRRC36
  hgvsc: ENST00000569552.1:c.-48A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000566558
  gene symbol: LRRC36
  hgvsc: ENST00000566558.1:n.390-76A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.-559A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-619A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-16171A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-113-76A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-113-76A>G
  variant of: http://identifiers.org/hgnc/25615
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD

16-67381347-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67381347
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67381347
    reference: chr 16
allele count: 3
allele frequency: 2.528487627267211e-5
allele num: 118648
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.-23A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.-23A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-16146A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.372-51A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*147-51A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.462-51A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.-23A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.392-51A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.-534A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456517
  ensembl transcript: ENST00000561821
  gene symbol: LRRC36
  hgvsc: ENST00000561821.1:c.-23A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000566558
  gene symbol: LRRC36
  hgvsc: ENST00000566558.1:n.390-51A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-594A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.-23A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.-23A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454309
  ensembl transcript: ENST00000569552
  gene symbol: LRRC36
  hgvsc: ENST00000569552.1:c.-23A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.-23A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-113-51A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-113-51A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.242-51A>T
  variant of: http://identifiers.org/hgnc/25615
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/16-67381357-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67381357
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67381358
    reference: chr 16
allele count: 1
allele frequency: 8.334305668994715e-6
allele num: 119986
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.-6dupA
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*147-34dupA
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000566558
  gene symbol: LRRC36
  hgvsc: ENST00000566558.1:n.390-34dupA
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.462-34dupA
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.-6dupA
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.372-34dupA
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.392-34dupA
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456517
  ensembl transcript: ENST00000561821
  gene symbol: LRRC36
  hgvsc: ENST00000561821.1:c.-6dupA
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.-517dupA
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-577dupA
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.-6dupA
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454309
  ensembl transcript: ENST00000569552
  gene symbol: LRRC36
  hgvsc: ENST00000569552.1:c.-6dupA
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.-6dupA
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.-6dupA
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-113-34dupA
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-16129dupA
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-113-34dupA
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.242-34dupA
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.-6dupA
  variant of: http://identifiers.org/hgnc/25615
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30506
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

16-67381364-A-AG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67381364
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67381365
    reference: chr 16
allele count: 1
allele frequency: 8.278693953241936e-6
allele num: 120792
alternate allele: AG
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456517
  ensembl transcript: ENST00000561821
  gene symbol: LRRC36
  hgvsc: ENST00000561821.1:c.-5dupG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.-5dupG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-16128dupG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.-5dupG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.-516dupG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.392-33dupG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-576dupG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454309
  ensembl transcript: ENST00000569552
  gene symbol: LRRC36
  hgvsc: ENST00000569552.1:c.-5dupG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.-5dupG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.-5dupG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.-5dupG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-113-33dupG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.-5dupG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.372-33dupG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.242-33dupG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-113-33dupG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*147-33dupG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000566558
  gene symbol: LRRC36
  hgvsc: ENST00000566558.1:n.390-33dupG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.462-33dupG
  variant of: http://identifiers.org/hgnc/25615
canonical: false
consequence: 5' UTR
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD

16-67381375-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67381375
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67381375
    reference: chr 16
allele count: 1
allele frequency: 8.250552787036732e-6
allele num: 121204
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-16118C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.392-23C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456517
  ensembl transcript: ENST00000561821
  gene symbol: LRRC36
  hgvsc: ENST00000561821.1:c.6C>T
  hgvsp: ENST00000561821.1:c.6C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*147-23C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.6C>T
  hgvsp: ENST00000563189.1:c.6C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454309
  ensembl transcript: ENST00000569552
  gene symbol: LRRC36
  hgvsc: ENST00000569552.1:c.6C>T
  hgvsp: ENST00000569552.1:c.6C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.6C>T
  hgvsp: ENST00000567823.1:c.6C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.462-23C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.6C>T
  hgvsp: ENST00000568010.1:c.6C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-566C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.242-23C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.6C>T
  hgvsp: ENST00000567211.1:c.6C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-113-23C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.372-23C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.-506C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.6C>T
  hgvsp: ENST00000435835.3:c.6C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000566558
  gene symbol: LRRC36
  hgvsc: ENST00000566558.1:n.390-23C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-113-23C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.6C>T
  hgvsp: ENST00000567723.1:c.6C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Leu2Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

16-67381383-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67381383
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67381383
    reference: chr 16
allele count: 2
allele frequency: 1.648886177387175e-5
allele num: 121294
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.14G>A
  hgvsp: ENSP00000455018.1:p.Arg5Gln
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*147-15G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456517
  ensembl transcript: ENST00000561821
  gene symbol: LRRC36
  hgvsc: ENST00000561821.1:c.14G>A
  hgvsp: ENSP00000456517.1:p.Arg5Gln
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.-498G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000566558
  gene symbol: LRRC36
  hgvsc: ENST00000566558.1:n.390-15G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.462-15G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.14G>A
  hgvsp: ENSP00000456164.1:p.Arg5Gln
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.14G>A
  hgvsp: ENSP00000455103.1:p.Arg5Gln
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-113-15G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-113-15G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.14G>A
  hgvsp: ENSP00000411122.3:p.Arg5Gln
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.14G>A
  hgvsp: ENSP00000455211.1:p.Arg5Gln
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.372-15G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454309
  ensembl transcript: ENST00000569552
  gene symbol: LRRC36
  hgvsc: ENST00000569552.1:c.14G>A
  hgvsp: ENSP00000454309.1:p.Arg5Gln
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-16110G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.14G>A
  hgvsp: ENSP00000455799.1:p.Arg5Gln
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-558G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.242-15G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.392-15G>A
  variant of: http://identifiers.org/hgnc/25615
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Arg5Gln
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

16-67381383-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67381383
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67381383
    reference: chr 16
allele count: 8599
allele frequency: 7.089386119676158e-2
allele num: 121294
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.462-15G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454309
  ensembl transcript: ENST00000569552
  gene symbol: LRRC36
  hgvsc: ENST00000569552.1:c.14G>C
  hgvsp: ENSP00000454309.1:p.Arg5Pro
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*147-15G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.392-15G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-558G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.14G>C
  hgvsp: ENSP00000455103.1:p.Arg5Pro
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.-498G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.14G>C
  hgvsp: ENSP00000411122.3:p.Arg5Pro
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.14G>C
  hgvsp: ENSP00000456164.1:p.Arg5Pro
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.372-15G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.14G>C
  hgvsp: ENSP00000455799.1:p.Arg5Pro
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456517
  ensembl transcript: ENST00000561821
  gene symbol: LRRC36
  hgvsc: ENST00000561821.1:c.14G>C
  hgvsp: ENSP00000456517.1:p.Arg5Pro
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000566558
  gene symbol: LRRC36
  hgvsc: ENST00000566558.1:n.390-15G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.14G>C
  hgvsp: ENSP00000455018.1:p.Arg5Pro
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.14G>C
  hgvsp: ENSP00000455211.1:p.Arg5Pro
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-113-15G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-16110G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.242-15G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-113-15G>C
  variant of: http://identifiers.org/hgnc/25615
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Arg5Pro
num of homozygotes: 420
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: FS

16-67381383-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67381383
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67381383
    reference: chr 16
allele count: 1
allele frequency: 8.244430886935875e-6
allele num: 121294
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454309
  ensembl transcript: ENST00000569552
  gene symbol: LRRC36
  hgvsc: ENST00000569552.1:c.14G>T
  hgvsp: ENSP00000454309.1:p.Arg5Leu
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.242-15G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.14G>T
  hgvsp: ENSP00000455103.1:p.Arg5Leu
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-16110G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000566558
  gene symbol: LRRC36
  hgvsc: ENST00000566558.1:n.390-15G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.372-15G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.392-15G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*147-15G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.14G>T
  hgvsp: ENSP00000455799.1:p.Arg5Leu
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456517
  ensembl transcript: ENST00000561821
  gene symbol: LRRC36
  hgvsc: ENST00000561821.1:c.14G>T
  hgvsp: ENSP00000456517.1:p.Arg5Leu
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.14G>T
  hgvsp: ENSP00000455018.1:p.Arg5Leu
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.14G>T
  hgvsp: ENSP00000455211.1:p.Arg5Leu
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.14G>T
  hgvsp: ENSP00000411122.3:p.Arg5Leu
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.-498G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.14G>T
  hgvsp: ENSP00000456164.1:p.Arg5Leu
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-113-15G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-558G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-113-15G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.462-15G>T
  variant of: http://identifiers.org/hgnc/25615
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Arg5Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum

16-67381403-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67381403
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67381403
    reference: chr 16
allele count: 2
allele frequency: 1.64836976230508e-5
allele num: 121332
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-538C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.397C>T
  hgvsp: ENSP00000329943.6:p.Arg133Ter
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-108C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.34C>T
  hgvsp: ENSP00000455103.1:p.Arg12Ter
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454309
  ensembl transcript: ENST00000569552
  gene symbol: LRRC36
  hgvsc: ENST00000569552.1:c.34C>T
  hgvsp: ENSP00000454309.1:p.Arg12Ter
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.247C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.34C>T
  hgvsp: ENSP00000411122.3:p.Arg12Ter
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.34C>T
  hgvsp: ENSP00000456164.1:p.Arg12Ter
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456517
  ensembl transcript: ENST00000561821
  gene symbol: LRRC36
  hgvsc: ENST00000561821.1:c.34C>T
  hgvsp: ENSP00000456517.1:p.Arg12Ter
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.34C>T
  hgvsp: ENSP00000455211.1:p.Arg12Ter
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-16090C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.377C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000566558
  gene symbol: LRRC36
  hgvsc: ENST00000566558.1:n.395C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.467C>T
  hgvsp: ENSP00000464675.1:p.Arg157Ter
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.34C>T
  hgvsp: ENSP00000455799.1:p.Arg12Ter
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.-478C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.34C>T
  hgvsp: ENSP00000455018.1:p.Arg12Ter
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*152C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-108C>T
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Arg133Ter
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

16-67381404-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67381404
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67381404
    reference: chr 16
allele count: 2
allele frequency: 1.648233917357551e-5
allele num: 121342
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454309
  ensembl transcript: ENST00000569552
  gene symbol: LRRC36
  hgvsc: ENST00000569552.1:c.35G>A
  hgvsp: ENSP00000454309.1:p.Arg12Gln
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.35G>A
  hgvsp: ENSP00000455018.1:p.Arg12Gln
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.35G>A
  hgvsp: ENSP00000456164.1:p.Arg12Gln
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-537G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*153G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-107G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.468G>A
  hgvsp: ENSP00000464675.1:p.Arg157Gln
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.35G>A
  hgvsp: ENSP00000411122.3:p.Arg12Gln
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000566558
  gene symbol: LRRC36
  hgvsc: ENST00000566558.1:n.396G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.35G>A
  hgvsp: ENSP00000455799.1:p.Arg12Gln
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456517
  ensembl transcript: ENST00000561821
  gene symbol: LRRC36
  hgvsc: ENST00000561821.1:c.35G>A
  hgvsp: ENSP00000456517.1:p.Arg12Gln
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.35G>A
  hgvsp: ENSP00000455103.1:p.Arg12Gln
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.35G>A
  hgvsp: ENSP00000455211.1:p.Arg12Gln
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.398G>A
  hgvsp: ENSP00000329943.6:p.Arg133Gln
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.-477G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.378G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-16089G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-107G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.248G>A
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Arg133Gln
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ

16-67381413-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67381413
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67381413
    reference: chr 16
allele count: 10
allele frequency: 8.241033755274261e-5
allele num: 121344
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000566558
  gene symbol: LRRC36
  hgvsc: ENST00000566558.1:n.405G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.44G>A
  hgvsp: ENSP00000456164.1:p.Arg15His
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456517
  ensembl transcript: ENST00000561821
  gene symbol: LRRC36
  hgvsc: ENST00000561821.1:c.44G>A
  hgvsp: ENSP00000456517.1:p.Arg15His
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.44G>A
  hgvsp: ENSP00000455799.1:p.Arg15His
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.407G>A
  hgvsp: ENSP00000329943.6:p.Arg136His
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-98G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-528G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.44G>A
  hgvsp: ENSP00000411122.3:p.Arg15His
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.44G>A
  hgvsp: ENSP00000455018.1:p.Arg15His
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.44G>A
  hgvsp: ENSP00000455103.1:p.Arg15His
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454309
  ensembl transcript: ENST00000569552
  gene symbol: LRRC36
  hgvsc: ENST00000569552.1:c.44G>A
  hgvsp: ENSP00000454309.1:p.Arg15His
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.44G>A
  hgvsp: ENSP00000455211.1:p.Arg15His
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.387G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*162G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.477G>A
  hgvsp: ENSP00000464675.1:p.Arg160His
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.-468G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-98G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-16080G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.257G>A
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Arg136His
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

16-67381429-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67381429
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67381429
    reference: chr 16
allele count: 1
allele frequency: 8.241577108195424e-6
allele num: 121336
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.493A>G
  hgvsp: ENST00000565019.2:c.493A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.60A>G
  hgvsp: ENST00000568010.1:c.60A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456517
  ensembl transcript: ENST00000561821
  gene symbol: LRRC36
  hgvsc: ENST00000561821.1:c.49+11A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.273A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.60A>G
  hgvsp: ENST00000567823.1:c.60A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.60A>G
  hgvsp: ENST00000567723.1:c.60A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-512A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000566558
  gene symbol: LRRC36
  hgvsc: ENST00000566558.1:n.421A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454309
  ensembl transcript: ENST00000569552
  gene symbol: LRRC36
  hgvsc: ENST00000569552.1:c.49+11A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.403A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.-452A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.60A>G
  hgvsp: ENST00000563189.1:c.60A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.49+11A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-16064A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.423A>G
  hgvsp: ENST00000329956.6:c.423A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*178A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-82A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.60A>G
  hgvsp: ENST00000435835.3:c.60A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-82A>G
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Lys141Lys
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
reference allele: A
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

16-67381430-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67381430
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67381430
    reference: chr 16
allele count: 5
allele frequency: 4.120720631624058e-5
allele num: 121338
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.61G>A
  hgvsp: ENSP00000455799.1:p.Ala21Thr
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.61G>A
  hgvsp: ENSP00000455018.1:p.Ala21Thr
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-511G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.61G>A
  hgvsp: ENSP00000456164.1:p.Ala21Thr
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.49+12G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.274G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.424G>A
  hgvsp: ENSP00000329943.6:p.Ala142Thr
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.61G>A
  hgvsp: ENSP00000411122.3:p.Ala21Thr
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.61G>A
  hgvsp: ENSP00000455103.1:p.Ala21Thr
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.494G>A
  hgvsp: ENSP00000464675.1:p.Ala166Thr
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-16063G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.404G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-81G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*179G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-81G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454309
  ensembl transcript: ENST00000569552
  gene symbol: LRRC36
  hgvsc: ENST00000569552.1:c.49+12G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000566558
  gene symbol: LRRC36
  hgvsc: ENST00000566558.1:n.422G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.-451G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456517
  ensembl transcript: ENST00000561821
  gene symbol: LRRC36
  hgvsc: ENST00000561821.1:c.49+12G>A
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ala142Thr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

16-67381436-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67381436
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67381436
    reference: chr 16
allele count: 1
allele frequency: 8.241848811525402e-6
allele num: 121332
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.67A>G
  hgvsp: ENSP00000455018.1:p.Lys23Glu
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.67A>G
  hgvsp: ENSP00000456164.1:p.Lys23Glu
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-75A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*185A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.67A>G
  hgvsp: ENSP00000455103.1:p.Lys23Glu
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.67A>G
  hgvsp: ENSP00000455799.1:p.Lys23Glu
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.430A>G
  hgvsp: ENSP00000329943.6:p.Lys144Glu
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.280A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-505A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456517
  ensembl transcript: ENST00000561821
  gene symbol: LRRC36
  hgvsc: ENST00000561821.1:c.49+18A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-16057A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-75A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.67A>G
  hgvsp: ENSP00000411122.3:p.Lys23Glu
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.500A>G
  hgvsp: ENSP00000464675.1:p.Lys168Glu
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.410A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.-445A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000566558
  gene symbol: LRRC36
  hgvsc: ENST00000566558.1:n.428A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.49+18A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454309
  ensembl transcript: ENST00000569552
  gene symbol: LRRC36
  hgvsc: ENST00000569552.1:c.49+18A>G
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Lys144Glu
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum

16-67381453-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67381453
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67381453
    reference: chr 16
allele count: 18
allele frequency: 1.48446262452992e-4
allele num: 121256
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.84G>A
  hgvsp: ENST00000563189.1:c.84G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.517G>A
  hgvsp: ENST00000565019.2:c.517G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.84G>A
  hgvsp: ENST00000568010.1:c.84G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-488G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.84G>A
  hgvsp: ENST00000567723.1:c.84G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.84G>A
  hgvsp: ENST00000567823.1:c.84G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.297G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-16040G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-58G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.427G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.447G>A
  hgvsp: ENST00000329956.6:c.447G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.49+35G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000566558
  gene symbol: LRRC36
  hgvsc: ENST00000566558.1:n.445G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*202G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456517
  ensembl transcript: ENST00000561821
  gene symbol: LRRC36
  hgvsc: ENST00000561821.1:c.49+35G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.-428G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-58G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454309
  ensembl transcript: ENST00000569552
  gene symbol: LRRC36
  hgvsc: ENST00000569552.1:c.49+35G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.84G>A
  hgvsp: ENST00000435835.3:c.84G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Gln149Gln
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/16-67381469-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67381469
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67381469
    reference: chr 16
allele count: 1
allele frequency: 8.262687356435807e-6
allele num: 121026
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-472A>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000566558
  gene symbol: LRRC36
  hgvsc: ENST00000566558.1:n.461A>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.100A>C
  hgvsp: ENSP00000455103.1:p.Asn34His
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.463A>C
  hgvsp: ENSP00000329943.6:p.Asn155His
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-42A>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.100A>C
  hgvsp: ENSP00000411122.3:p.Asn34His
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.100A>C
  hgvsp: ENSP00000456164.1:p.Asn34His
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.100A>C
  hgvsp: ENSP00000455799.1:p.Asn34His
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.49+51A>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.533A>C
  hgvsp: ENSP00000464675.1:p.Asn179His
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.313A>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.100A>C
  hgvsp: ENSP00000455018.1:p.Asn34His
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456517
  ensembl transcript: ENST00000561821
  gene symbol: LRRC36
  hgvsc: ENST00000561821.1:c.49+51A>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.443A>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-16024A>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454309
  ensembl transcript: ENST00000569552
  gene symbol: LRRC36
  hgvsc: ENST00000569552.1:c.49+51A>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.-412A>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-42A>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*218A>C
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Asn155His
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

16-67381469-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67381469
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67381469
    reference: chr 16
allele count: 2
allele frequency: 1.652537471287161e-5
allele num: 121026
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.100A>G
  hgvsp: ENSP00000456164.1:p.Asn34Asp
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000566558
  gene symbol: LRRC36
  hgvsc: ENST00000566558.1:n.461A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.100A>G
  hgvsp: ENSP00000411122.3:p.Asn34Asp
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.463A>G
  hgvsp: ENSP00000329943.6:p.Asn155Asp
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.100A>G
  hgvsp: ENSP00000455018.1:p.Asn34Asp
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.49+51A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.443A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-16024A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.100A>G
  hgvsp: ENSP00000455103.1:p.Asn34Asp
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.533A>G
  hgvsp: ENSP00000464675.1:p.Asn179Asp
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*218A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.100A>G
  hgvsp: ENSP00000455799.1:p.Asn34Asp
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.-412A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-42A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-472A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.313A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456517
  ensembl transcript: ENST00000561821
  gene symbol: LRRC36
  hgvsc: ENST00000561821.1:c.49+51A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-42A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454309
  ensembl transcript: ENST00000569552
  gene symbol: LRRC36
  hgvsc: ENST00000569552.1:c.49+51A>G
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Asn155Asp
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD

16-67381481-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67381481
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67381481
    reference: chr 16
allele count: 2
allele frequency: 1.665722757104307e-5
allele num: 120068
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-460G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.112G>C
  hgvsp: ENSP00000455018.1:p.Glu38Gln
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*230G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.112G>C
  hgvsp: ENSP00000455799.1:p.Glu38Gln
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.112G>C
  hgvsp: ENSP00000456164.1:p.Glu38Gln
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.475G>C
  hgvsp: ENSP00000329943.6:p.Glu159Gln
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.112G>C
  hgvsp: ENSP00000455103.1:p.Glu38Gln
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.-400G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-16012G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000566558
  gene symbol: LRRC36
  hgvsc: ENST00000566558.1:n.473G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.545G>C
  hgvsp: ENSP00000464675.1:p.Glu183Gln
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-30G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456517
  ensembl transcript: ENST00000561821
  gene symbol: LRRC36
  hgvsc: ENST00000561821.1:c.49+63G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.49+63G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.325G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.112G>C
  hgvsp: ENSP00000411122.3:p.Glu38Gln
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-30G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.455G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454309
  ensembl transcript: ENST00000569552
  gene symbol: LRRC36
  hgvsc: ENST00000569552.1:c.49+63G>C
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Glu159Gln
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum

16-67381483-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67381483
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67381483
    reference: chr 16
allele count: 1
allele frequency: 8.34306691139663e-6
allele num: 119860
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-458G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.114G>A
  hgvsp: ENST00000435835.3:c.114G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.114G>A
  hgvsp: ENST00000567723.1:c.114G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*232G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.49+65G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.114G>A
  hgvsp: ENST00000563189.1:c.114G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.547G>A
  hgvsp: ENST00000565019.2:c.547G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.477G>A
  hgvsp: ENST00000329956.6:c.477G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.114G>A
  hgvsp: ENST00000567823.1:c.114G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.327G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-16010G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.-398G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.114G>A
  hgvsp: ENST00000568010.1:c.114G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456517
  ensembl transcript: ENST00000561821
  gene symbol: LRRC36
  hgvsc: ENST00000561821.1:c.49+65G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-28G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-28G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454309
  ensembl transcript: ENST00000569552
  gene symbol: LRRC36
  hgvsc: ENST00000569552.1:c.49+65G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000566558
  gene symbol: LRRC36
  hgvsc: ENST00000566558.1:n.475G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.457G>A
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Glu159Glu
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

16-67381484-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67381484
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67381484
    reference: chr 16
allele count: 16
allele frequency: 1.338150675766091e-4
allele num: 119568
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-27G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.458G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.115G>T
  hgvsp: ENSP00000455018.1:p.Val39Leu
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.115G>T
  hgvsp: ENSP00000456164.1:p.Val39Leu
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.115G>T
  hgvsp: ENSP00000455799.1:p.Val39Leu
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.478G>T
  hgvsp: ENSP00000329943.6:p.Val160Leu
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-27G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.548G>T
  hgvsp: ENSP00000464675.1:p.Val184Leu
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000566558
  gene symbol: LRRC36
  hgvsc: ENST00000566558.1:n.476G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454309
  ensembl transcript: ENST00000569552
  gene symbol: LRRC36
  hgvsc: ENST00000569552.1:c.49+66G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-457G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.115G>T
  hgvsp: ENSP00000455103.1:p.Val39Leu
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.115G>T
  hgvsp: ENSP00000411122.3:p.Val39Leu
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456517
  ensembl transcript: ENST00000561821
  gene symbol: LRRC36
  hgvsc: ENST00000561821.1:c.49+66G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*233G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.-397G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.328G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-16009G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.49+66G>T
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Val160Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: South Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

16-67381486-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67381486
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67381486
    reference: chr 16
allele count: 1
allele frequency: 8.378718056137411e-6
allele num: 119350
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.-395G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.117G>A
  hgvsp: ENST00000563189.1:c.117G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-455G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.49+68G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454309
  ensembl transcript: ENST00000569552
  gene symbol: LRRC36
  hgvsc: ENST00000569552.1:c.49+68G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456517
  ensembl transcript: ENST00000561821
  gene symbol: LRRC36
  hgvsc: ENST00000561821.1:c.49+68G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.117G>A
  hgvsp: ENST00000435835.3:c.117G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.117G>A
  hgvsp: ENST00000567823.1:c.117G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.330G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-16007G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.117G>A
  hgvsp: ENST00000568010.1:c.117G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*235G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.480G>A
  hgvsp: ENST00000329956.6:c.480G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.117G>A
  hgvsp: ENST00000567723.1:c.117G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.460G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.550G>A
  hgvsp: ENST00000565019.2:c.550G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000566558
  gene symbol: LRRC36
  hgvsc: ENST00000566558.1:n.478G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-25G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-25G>A
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Val160Val
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

16-67381488-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67381488
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67381488
    reference: chr 16
allele count: 1
allele frequency: 8.427865895797866e-6
allele num: 118654
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-23A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.-393A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-23A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456517
  ensembl transcript: ENST00000561821
  gene symbol: LRRC36
  hgvsc: ENST00000561821.1:c.49+70A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.119A>T
  hgvsp: ENSP00000455103.1:p.Glu40Val
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.119A>T
  hgvsp: ENSP00000455018.1:p.Glu40Val
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.119A>T
  hgvsp: ENSP00000411122.3:p.Glu40Val
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*237A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.482A>T
  hgvsp: ENSP00000329943.6:p.Glu161Val
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.332A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.552A>T
  hgvsp: ENSP00000464675.1:p.Glu185Val
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454309
  ensembl transcript: ENST00000569552
  gene symbol: LRRC36
  hgvsc: ENST00000569552.1:c.49+70A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.462A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.119A>T
  hgvsp: ENSP00000456164.1:p.Glu40Val
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.119A>T
  hgvsp: ENSP00000455799.1:p.Glu40Val
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000566558
  gene symbol: LRRC36
  hgvsc: ENST00000566558.1:n.480A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.49+70A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-16005A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-453A>T
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Glu161Val
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

16-67381494-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67381494
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67381494
    reference: chr 16
allele count: 2
allele frequency: 1.710395785584784e-5
allele num: 116932
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000566558
  gene symbol: LRRC36
  hgvsc: ENST00000566558.1:n.486G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.49+76G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-17G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.338G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.125G>A
  hgvsp: ENSP00000456164.1:p.Ser42Asn
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454309
  ensembl transcript: ENST00000569552
  gene symbol: LRRC36
  hgvsc: ENST00000569552.1:c.49+76G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.125G>A
  hgvsp: ENSP00000455799.1:p.Ser42Asn
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456517
  ensembl transcript: ENST00000561821
  gene symbol: LRRC36
  hgvsc: ENST00000561821.1:c.49+76G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.125G>A
  hgvsp: ENSP00000455018.1:p.Ser42Asn
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.125G>A
  hgvsp: ENSP00000411122.3:p.Ser42Asn
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.468G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-447G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.558G>A
  hgvsp: ENSP00000464675.1:p.Ser187Asn
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*243G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.125G>A
  hgvsp: ENSP00000455103.1:p.Ser42Asn
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.-387G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.488G>A
  hgvsp: ENSP00000329943.6:p.Ser163Asn
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-17G>A
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ser163Asn
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

16-67381496-TAAG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67381496
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67381493
    reference: chr 16
allele count: 5
allele frequency: 4.310121890247057e-5
allele num: 116006
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.49+83_49+85delAGA
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.125+7_125+9delAGA
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.468+7_468+9delAGA
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.558+7_558+9delAGA
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.125+7_125+9delAGA
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.125+7_125+9delAGA
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-17+7_-17+9delAGA
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-17+7_-17+9delAGA
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.125+7_125+9delAGA
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*243+7_*243+9delAGA
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454309
  ensembl transcript: ENST00000569552
  gene symbol: LRRC36
  hgvsc: ENST00000569552.1:c.49+83_49+85delAGA
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.488+7_488+9delAGA
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.-387+7_-387+9delAGA
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.338+7_338+9delAGA
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-15992_71-15990delAGA
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-447+7_-447+9delAGA
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.125+7_125+9delAGA
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456517
  ensembl transcript: ENST00000561821
  gene symbol: LRRC36
  hgvsc: ENST00000561821.1:c.49+83_49+85delAGA
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: c.488+7_488+9delAGA
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: TAAG
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff

16-67381511-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67381511
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67381511
    reference: chr 16
allele count: 1
allele frequency: 9.290571927607864e-6
allele num: 107636
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*243+17C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454309
  ensembl transcript: ENST00000569552
  gene symbol: LRRC36
  hgvsc: ENST00000569552.1:c.49+93C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.-387+17C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-17+17C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.558+17C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.338+17C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.125+17C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.125+17C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.49+93C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-17+17C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.125+17C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.488+17C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.125+17C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.468+17C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-15982C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.125+17C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-447+17C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456517
  ensembl transcript: ENST00000561821
  gene symbol: LRRC36
  hgvsc: ENST00000561821.1:c.49+93C>G
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13351
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13278
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

16-67381511-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67381511
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67381511
    reference: chr 16
allele count: 1
allele frequency: 9.290571927607864e-6
allele num: 107636
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.125+17C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.338+17C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-15982C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.-387+17C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454309
  ensembl transcript: ENST00000569552
  gene symbol: LRRC36
  hgvsc: ENST00000569552.1:c.49+93C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.49+93C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.125+17C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-17+17C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.125+17C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-447+17C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.125+17C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.125+17C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456517
  ensembl transcript: ENST00000561821
  gene symbol: LRRC36
  hgvsc: ENST00000561821.1:c.49+93C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.468+17C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.558+17C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.488+17C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*243+17C>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-17+17C>T
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13351
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

16-67381516-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67381516
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67381516
    reference: chr 16
allele count: 1
allele frequency: 9.52435377259653e-6
allele num: 104994
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.49+98T>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.-387+22T>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.558+22T>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.488+22T>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.125+22T>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-17+22T>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.338+22T>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.125+22T>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-447+22T>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.125+22T>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-17+22T>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456517
  ensembl transcript: ENST00000561821
  gene symbol: LRRC36
  hgvsc: ENST00000561821.1:c.49+98T>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454309
  ensembl transcript: ENST00000569552
  gene symbol: LRRC36
  hgvsc: ENST00000569552.1:c.49+98T>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-15977T>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.125+22T>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*243+22T>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.125+22T>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.468+22T>A
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4610
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6962
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
reference allele: T
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

16-67381524-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67381524
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67381524
    reference: chr 16
allele count: 1
allele frequency: 9.825499135356077e-6
allele num: 101776
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-15969G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.125+30G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.468+30G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.125+30G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.125+30G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-17+30G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.49+106G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.125+30G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.-387+30G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.558+30G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-447+30G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454309
  ensembl transcript: ENST00000569552
  gene symbol: LRRC36
  hgvsc: ENST00000569552.1:c.49+106G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*243+30G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456517
  ensembl transcript: ENST00000561821
  gene symbol: LRRC36
  hgvsc: ENST00000561821.1:c.49+106G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.488+30G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-17+30G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.125+30G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.338+30G>C
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7750
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8392
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3107
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

16-67381528-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67381528
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67381528
    reference: chr 16
allele count: 1
allele frequency: 1.000400160064026e-5
allele num: 99960
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.-387+34G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.125+34G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.125+34G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-447+34G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.125+34G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.338+34G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454309
  ensembl transcript: ENST00000569552
  gene symbol: LRRC36
  hgvsc: ENST00000569552.1:c.49+110G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.468+34G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*243+34G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.49+110G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-15965G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-17+34G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.125+34G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.558+34G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.488+34G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456517
  ensembl transcript: ENST00000561821
  gene symbol: LRRC36
  hgvsc: ENST00000561821.1:c.49+110G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-17+34G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.125+34G>A
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2817
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

16-67381528-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67381528
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67381528
    reference: chr 16
allele count: 2
allele frequency: 2.000800320128051e-5
allele num: 99960
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454309
  ensembl transcript: ENST00000569552
  gene symbol: LRRC36
  hgvsc: ENST00000569552.1:c.49+110G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.488+34G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-17+34G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.125+34G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.468+34G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.-387+34G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.49+110G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*243+34G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.338+34G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456517
  ensembl transcript: ENST00000561821
  gene symbol: LRRC36
  hgvsc: ENST00000561821.1:c.49+110G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.558+34G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.125+34G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.125+34G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.125+34G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-15965G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-447+34G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-17+34G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.125+34G>T
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4269
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21801
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP

16-67381537-CATAGGAAAT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67381537
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67381528
    reference: chr 16
allele count: 2
allele frequency: 2.113003423065545e-5
allele num: 94652
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456517
  ensembl transcript: ENST00000561821
  gene symbol: LRRC36
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454309
  ensembl transcript: ENST00000569552
  gene symbol: LRRC36
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2029
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20235
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3183
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
reference allele: CATAGGAAAT
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD

16-67381546-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67381546
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67381546
    reference: chr 16
allele count: 1
allele frequency: 1.111308677098151e-5
allele num: 89984
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456517
  ensembl transcript: ENST00000561821
  gene symbol: LRRC36
  hgvsc: ENST00000561821.1:c.49+128T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.125+52T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.468+52T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.-387+52T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.125+52T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.125+52T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.558+52T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-447+52T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.338+52T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.49+128T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.488+52T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-17+52T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.125+52T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*243+52T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-17+52T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-15947T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454309
  ensembl transcript: ENST00000569552
  gene symbol: LRRC36
  hgvsc: ENST00000569552.1:c.49+128T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.125+52T>C
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4871
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

16-67384059-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67384059
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67384059
    reference: chr 16
allele count: 156
allele frequency: 1.407129455909944e-3
allele num: 110864
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.461-46C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.489-46C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.126-46C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-13434C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.126-46C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.469-46C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.-386-46C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-16-46C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454309
  ensembl transcript: ENST00000569552
  gene symbol: LRRC36
  hgvsc: ENST00000569552.1:c.50-46C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-446-46C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.126-46C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*244-46C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456517
  ensembl transcript: ENST00000561821
  gene symbol: LRRC36
  hgvsc: ENST00000561821.1:c.50-46C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.50-46C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.126-46C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.559-46C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-16-46C>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.126-46C>G
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2619
  bin: 4.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4406
  bin: 1.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
num of homozygotes: 1
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP

16-67384060-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67384060
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67384061
    reference: chr 16
allele count: 3030
allele frequency: 6.755551591902256e-2
allele num: 44852
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.126-31dupT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.461-31dupT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.489-31dupT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.126-31dupT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-16-31dupT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.559-31dupT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-13419dupT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.126-31dupT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.126-31dupT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.126-31dupT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-16-31dupT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*244-31dupT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-446-31dupT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.50-31dupT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.469-31dupT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456517
  ensembl transcript: ENST00000561821
  gene symbol: LRRC36
  hgvsc: ENST00000561821.1:c.50-31dupT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.-386-31dupT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454309
  ensembl transcript: ENST00000569552
  gene symbol: LRRC36
  hgvsc: ENST00000569552.1:c.50-31dupT
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 2.5e0
  variant carriers: 160
genotype depth: GenotypeDepth
  all individuals: 10646
  bin: 1.75e1
  variant carriers: 824
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 4.25e1
  variant carriers: 86
genotype quality: GenotypeQuality
num of homozygotes: 68
population: African
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

16-67384060-C-CTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67384060
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67384062
    reference: chr 16
allele count: 671
allele frequency: 1.49603139213413e-2
allele num: 44852
alternate allele: CTT
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.126-32_126-31dupTT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.489-32_489-31dupTT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-13420_71-13419dupTT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.126-32_126-31dupTT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-16-32_-16-31dupTT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-446-32_-446-31dupTT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.126-32_126-31dupTT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.-386-32_-386-31dupTT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.50-32_50-31dupTT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-16-32_-16-31dupTT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456517
  ensembl transcript: ENST00000561821
  gene symbol: LRRC36
  hgvsc: ENST00000561821.1:c.50-32_50-31dupTT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.559-32_559-31dupTT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454309
  ensembl transcript: ENST00000569552
  gene symbol: LRRC36
  hgvsc: ENST00000569552.1:c.50-32_50-31dupTT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.461-32_461-31dupTT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.126-32_126-31dupTT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.126-32_126-31dupTT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*244-32_*244-31dupTT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.469-32_469-31dupTT
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 5.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 10181
  bin: 2.75e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 2.5e0
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 57
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

16-67384060-C-CTTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67384060
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67384063
    reference: chr 16
allele count: 79
allele frequency: 1.761348434852403e-3
allele num: 44852
alternate allele: CTTT
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456517
  ensembl transcript: ENST00000561821
  gene symbol: LRRC36
  hgvsc: ENST00000561821.1:c.50-33_50-31dupTTT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.126-33_126-31dupTTT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.461-33_461-31dupTTT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-16-33_-16-31dupTTT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.-386-33_-386-31dupTTT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-13421_71-13419dupTTT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454309
  ensembl transcript: ENST00000569552
  gene symbol: LRRC36
  hgvsc: ENST00000569552.1:c.50-33_50-31dupTTT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.489-33_489-31dupTTT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.126-33_126-31dupTTT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.126-33_126-31dupTTT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.126-33_126-31dupTTT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-446-33_-446-31dupTTT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.50-33_50-31dupTTT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.559-33_559-31dupTTT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.126-33_126-31dupTTT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.469-33_469-31dupTTT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-16-33_-16-31dupTTT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*244-33_*244-31dupTTT
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12252
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10181
  bin: 2.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
num of homozygotes: 6
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

16-67384060-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67384060
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67384059
    reference: chr 16
allele count: 13889
allele frequency: 3.096628912868991e-1
allele num: 44852
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-446-31delT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.50-31delT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-16-31delT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456517
  ensembl transcript: ENST00000561821
  gene symbol: LRRC36
  hgvsc: ENST00000561821.1:c.50-31delT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.461-31delT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*244-31delT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.-386-31delT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-13419delT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.469-31delT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.126-31delT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.489-31delT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.126-31delT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.126-31delT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.559-31delT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.126-31delT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.126-31delT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454309
  ensembl transcript: ENST00000569552
  gene symbol: LRRC36
  hgvsc: ENST00000569552.1:c.50-31delT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-16-31delT
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 6501
  bin: 1.25e1
  variant carriers: 2182
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 4.75e1
  variant carriers: 245
genotype depth: GenotypeDepth
  all individuals: 3708
  bin: 3.75e1
  variant carriers: 760
genotype quality: GenotypeQuality
num of homozygotes: 3
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
reference allele: CT
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff

16-67384060-CTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67384060
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67384058
    reference: chr 16
allele count: 2164
allele frequency: 4.82475697850709e-2
allele num: 44852
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.489-32_489-31delTT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.126-32_126-31delTT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.126-32_126-31delTT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.461-32_461-31delTT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.126-32_126-31delTT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-16-32_-16-31delTT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-13420_71-13419delTT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-16-32_-16-31delTT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.126-32_126-31delTT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.469-32_469-31delTT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.559-32_559-31delTT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454309
  ensembl transcript: ENST00000569552
  gene symbol: LRRC36
  hgvsc: ENST00000569552.1:c.50-32_50-31delTT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.-386-32_-386-31delTT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.126-32_126-31delTT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.50-32_50-31delTT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456517
  ensembl transcript: ENST00000561821
  gene symbol: LRRC36
  hgvsc: ENST00000561821.1:c.50-32_50-31delTT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-446-32_-446-31delTT
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*244-32_*244-31delTT
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12252
  bin: 2.25e1
  variant carriers: 656
genotype quality: GenotypeQuality
num of homozygotes: 5
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: CTT
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD

16-67384060-CTTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67384060
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67384057
    reference: chr 16
allele count: 77
allele frequency: 1.716757335235887e-3
allele num: 44852
alternate allele: C
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6501
  bin: 1.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 10181
  bin: 2.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3708
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10646
  bin: 1.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 3471
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12252
  bin: 2.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6653
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28752
  bin: 2.5e0
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1785
  bin: 2.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 679
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1651
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2307
  bin: 7.5e0
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2074
  bin: 2.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 855
  bin: 7.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1656
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1749
  bin: 3.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1008
  bin: 6.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 5076
  bin: 9.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 1618
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1525
  bin: 5.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1275
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1561
  bin: 1.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 854
  bin: 7.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1249
  bin: 5.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1742
  bin: 3.75e1
  variant carriers: 2
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 5
  allele frequency: 1.605651894669236e-3
  allele num: 3114
  num of homozygotes: 0
population: African
  type: Population
  allele count: 1
  allele frequency: 3.35345405767941e-4
  allele num: 2982
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 41
  allele frequency: 1.448660872023179e-3
  allele num: 28302
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 5
  allele frequency: 2.431906614785992e-3
  allele num: 2056
  num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
reference allele: CTTT
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP

16-67384066-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67384066
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67384067
    reference: chr 16
allele count: 1
allele frequency: 1.517404631118934e-5
allele num: 65902
alternate allele: TG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.469-39_469-38insG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.126-39_126-38insG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456517
  ensembl transcript: ENST00000561821
  gene symbol: LRRC36
  hgvsc: ENST00000561821.1:c.50-39_50-38insG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.126-39_126-38insG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.-386-39_-386-38insG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.126-39_126-38insG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*244-39_*244-38insG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.126-39_126-38insG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.126-39_126-38insG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.461-39_461-38insG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.489-39_489-38insG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454309
  ensembl transcript: ENST00000569552
  gene symbol: LRRC36
  hgvsc: ENST00000569552.1:c.50-39_50-38insG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-446-39_-446-38insG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.50-39_50-38insG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-16-39_-16-38insG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-13427_71-13426insG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.559-39_559-38insG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-16-39_-16-38insG
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1977
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

16-67384074-TGAG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67384074
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67384071
    reference: chr 16
allele count: 13
allele frequency: 1.208358120166567e-4
allele num: 107584
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-446-30_-446-28delGAG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*244-30_*244-28delGAG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.50-30_50-28delGAG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.461-30_461-28delGAG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-16-30_-16-28delGAG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.126-30_126-28delGAG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-13418_71-13416delGAG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.489-30_489-28delGAG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456517
  ensembl transcript: ENST00000561821
  gene symbol: LRRC36
  hgvsc: ENST00000561821.1:c.50-30_50-28delGAG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.126-30_126-28delGAG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.469-30_469-28delGAG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454309
  ensembl transcript: ENST00000569552
  gene symbol: LRRC36
  hgvsc: ENST00000569552.1:c.50-30_50-28delGAG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.126-30_126-28delGAG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.126-30_126-28delGAG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.-386-30_-386-28delGAG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-16-30_-16-28delGAG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.126-30_126-28delGAG
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.559-30_559-28delGAG
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
reference allele: TGAG
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

16-67384075-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67384075
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67384075
    reference: chr 16
allele count: 2
allele frequency: 3.575003575003575e-5
allele num: 55944
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.126-30G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.489-30G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454309
  ensembl transcript: ENST00000569552
  gene symbol: LRRC36
  hgvsc: ENST00000569552.1:c.50-30G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.126-30G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.126-30G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-446-30G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.559-30G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-16-30G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.126-30G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.50-30G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.461-30G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.469-30G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.-386-30G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.126-30G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*244-30G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-16-30G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-13418G>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456517
  ensembl transcript: ENST00000561821
  gene symbol: LRRC36
  hgvsc: ENST00000561821.1:c.50-30G>C
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13587
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

16-67384075-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67384075
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67384075
    reference: chr 16
allele count: 60
allele frequency: 1.072501072501072e-3
allele num: 55944
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.126-30G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454309
  ensembl transcript: ENST00000569552
  gene symbol: LRRC36
  hgvsc: ENST00000569552.1:c.50-30G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.559-30G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.50-30G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-446-30G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.126-30G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-16-30G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.126-30G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.461-30G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.126-30G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-16-30G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-13418G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.469-30G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*244-30G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.-386-30G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456517
  ensembl transcript: ENST00000561821
  gene symbol: LRRC36
  hgvsc: ENST00000561821.1:c.50-30G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.126-30G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.489-30G>T
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13587
  bin: 1.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

16-67384075-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67384075
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67384075
    reference: chr 16
allele count: 2
allele frequency: 3.575003575003575e-5
allele num: 55944
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-13418G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.126-30G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.461-30G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.-386-30G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.126-30G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-16-30G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456517
  ensembl transcript: ENST00000561821
  gene symbol: LRRC36
  hgvsc: ENST00000561821.1:c.50-30G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.126-30G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-16-30G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*244-30G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454309
  ensembl transcript: ENST00000569552
  gene symbol: LRRC36
  hgvsc: ENST00000569552.1:c.50-30G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.50-30G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.126-30G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.126-30G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.559-30G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.489-30G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-446-30G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.469-30G>A
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum

16-67384076-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67384076
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67384076
    reference: chr 16
allele count: 6
allele frequency: 7.183564005555289e-5
allele num: 83524
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.126-29A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454309
  ensembl transcript: ENST00000569552
  gene symbol: LRRC36
  hgvsc: ENST00000569552.1:c.50-29A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*244-29A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.461-29A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.469-29A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.-386-29A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.559-29A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.126-29A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-16-29A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-446-29A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456517
  ensembl transcript: ENST00000561821
  gene symbol: LRRC36
  hgvsc: ENST00000561821.1:c.50-29A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.126-29A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.50-29A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.126-29A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.126-29A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-16-29A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.489-29A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-13417A>G
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5205
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD

16-67384076-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67384076
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67384076
    reference: chr 16
allele count: 2
allele frequency: 2.394521335185097e-5
allele num: 83524
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-446-29A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.559-29A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456517
  ensembl transcript: ENST00000561821
  gene symbol: LRRC36
  hgvsc: ENST00000561821.1:c.50-29A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454309
  ensembl transcript: ENST00000569552
  gene symbol: LRRC36
  hgvsc: ENST00000569552.1:c.50-29A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.-386-29A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.126-29A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-13417A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.126-29A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.50-29A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.461-29A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.126-29A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.469-29A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.126-29A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.126-29A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.489-29A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-16-29A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*244-29A>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-16-29A>T
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5205
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8540
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

16-67384077-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67384077
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67384077
    reference: chr 16
allele count: 2
allele frequency: 1.97870909018956e-5
allele num: 101076
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456517
  ensembl transcript: ENST00000561821
  gene symbol: LRRC36
  hgvsc: ENST00000561821.1:c.50-28G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.50-28G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.461-28G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.126-28G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.126-28G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.469-28G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-446-28G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.126-28G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454309
  ensembl transcript: ENST00000569552
  gene symbol: LRRC36
  hgvsc: ENST00000569552.1:c.50-28G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-16-28G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-13416G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.489-28G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-16-28G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.126-28G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.126-28G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.-386-28G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*244-28G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.559-28G>T
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10803
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

16-67384080-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67384080
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67384080
    reference: chr 16
allele count: 13
allele frequency: 1.246763210894792e-4
allele num: 104270
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.559-25G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.126-25G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.469-25G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456517
  ensembl transcript: ENST00000561821
  gene symbol: LRRC36
  hgvsc: ENST00000561821.1:c.50-25G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*244-25G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.-386-25G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-16-25G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454309
  ensembl transcript: ENST00000569552
  gene symbol: LRRC36
  hgvsc: ENST00000569552.1:c.50-25G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-16-25G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.126-25G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.50-25G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.126-25G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.489-25G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.126-25G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.126-25G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.461-25G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-13413G>T
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-446-25G>T
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6479
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4138
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2418
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff

16-67384086-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67384086
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67384086
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 110474
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.126-19A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.469-19A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-13407A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456517
  ensembl transcript: ENST00000561821
  gene symbol: LRRC36
  hgvsc: ENST00000561821.1:c.50-19A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.126-19A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.-386-19A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-16-19A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.50-19A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-16-19A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-446-19A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.489-19A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.461-19A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454309
  ensembl transcript: ENST00000569552
  gene symbol: LRRC36
  hgvsc: ENST00000569552.1:c.50-19A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*244-19A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.126-19A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.126-19A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.126-19A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.559-19A>G
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

16-67384097-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67384097
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67384097
    reference: chr 16
allele count: 1
allele frequency: 8.414533582403528e-6
allele num: 118842
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-16-8T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.469-8T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.126-8T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.-386-8T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.489-8T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.461-8T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.50-8T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.559-8T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.126-8T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454309
  ensembl transcript: ENST00000569552
  gene symbol: LRRC36
  hgvsc: ENST00000569552.1:c.50-8T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.126-8T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456517
  ensembl transcript: ENST00000561821
  gene symbol: LRRC36
  hgvsc: ENST00000561821.1:c.50-8T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.126-8T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-446-8T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*244-8T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.126-8T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-16-8T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-13396T>C
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: c.489-8T>C
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

16-67384099-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67384099
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67384099
    reference: chr 16
allele count: 1
allele frequency: 8.373105584861425e-6
allele num: 119430
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.126-6T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.126-6T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*244-6T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456517
  ensembl transcript: ENST00000561821
  gene symbol: LRRC36
  hgvsc: ENST00000561821.1:c.50-6T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.50-6T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.469-6T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.-386-6T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-13394T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.126-6T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-446-6T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.489-6T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.126-6T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-16-6T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.126-6T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.461-6T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-16-6T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.559-6T>C
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454309
  ensembl transcript: ENST00000569552
  gene symbol: LRRC36
  hgvsc: ENST00000569552.1:c.50-6T>C
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: c.489-6T>C
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

16-67384103-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67384103
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67384103
    reference: chr 16
allele count: 2
allele frequency: 1.663616702711695e-5
allele num: 120220
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456517
  ensembl transcript: ENST00000561821
  gene symbol: LRRC36
  hgvsc: ENST00000561821.1:c.50-2A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.559-2A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.126-2A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454309
  ensembl transcript: ENST00000569552
  gene symbol: LRRC36
  hgvsc: ENST00000569552.1:c.50-2A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.469-2A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-16-2A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.126-2A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.126-2A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-446-2A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-13390A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-16-2A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.50-2A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.489-2A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.126-2A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.126-2A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*244-2A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.-386-2A>G
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.461-2A>G
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2942
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.489-2A>G
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum

16-67384104-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67384104
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67384104
    reference: chr 16
allele count: 1
allele frequency: 8.313519445321983e-6
allele num: 120286
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.126-1G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454309
  ensembl transcript: ENST00000569552
  gene symbol: LRRC36
  hgvsc: ENST00000569552.1:c.50-1G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.489-1G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.126-1G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456517
  ensembl transcript: ENST00000561821
  gene symbol: LRRC36
  hgvsc: ENST00000561821.1:c.50-1G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.469-1G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.-386-1G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.461-1G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-16-1G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.559-1G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.50-1G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*244-1G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-446-1G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.126-1G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.126-1G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-16-1G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-13389G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.126-1G>A
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.489-1G>A
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff

16-67384104-GC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67384104
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67384103
    reference: chr 16
allele count: 2
allele frequency: 1.662703889064397e-5
allele num: 120286
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.126delC
  hgvsp: ENSP00000456164.1:p.Ser43LeufsTer6
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.461delC
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.-386delC
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.126delC
  hgvsp: ENSP00000455018.1:p.Ser43LeufsTer6
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-13388delC
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.126delC
  hgvsp: ENSP00000455103.1:p.Ser43LeufsTer6
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.126delC
  hgvsp: ENSP00000411122.3:p.Ser43LeufsTer6
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-16delC
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*244delC
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454309
  ensembl transcript: ENST00000569552
  gene symbol: LRRC36
  hgvsc: ENST00000569552.1:c.50delC
  hgvsp: ENSP00000454309.1:p.Ala17ValfsTer2
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.489delC
  hgvsp: ENSP00000329943.6:p.Ser164LeufsTer6
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.50delC
  hgvsp: ENSP00000455211.1:p.Ala17ValfsTer2
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.469delC
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-446delC
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.559delC
  hgvsp: ENSP00000464675.1:p.Ser188LeufsTer6
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.126delC
  hgvsp: ENSP00000455799.1:p.Ser43LeufsTer6
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-16delC
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456517
  ensembl transcript: ENST00000561821
  gene symbol: LRRC36
  hgvsc: ENST00000561821.1:c.50delC
  hgvsp: ENSP00000456517.1:p.Ala17ValfsTer2
  variant of: http://identifiers.org/hgnc/25615
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ser164LeufsTer6
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: GC
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD

16-67384111-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67384111
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 67384111
    reference: chr 16
allele count: 1
allele frequency: 8.266375690242371e-6
allele num: 120972
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464675
  ensembl transcript: ENST00000565019
  gene symbol: LRRC36
  hgvsc: ENST00000565019.2:c.565G>A
  hgvsp: ENST00000565019.2:c.565G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456164
  ensembl transcript: ENST00000567823
  gene symbol: LRRC36
  hgvsc: ENST00000567823.1:c.132G>A
  hgvsp: ENST00000567823.1:c.132G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456347
  ensembl transcript: ENST00000561948
  gene symbol: LRRC36
  hgvsc: ENST00000561948.1:c.71-13382G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456517
  ensembl transcript: ENST00000561821
  gene symbol: LRRC36
  hgvsc: ENST00000561821.1:c.56G>A
  hgvsp: ENSP00000456517.1:p.Gly19Glu
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000290940
  ensembl transcript: ENST00000290940
  gene symbol: LRRC36
  hgvsc: ENST00000290940.7:c.-380G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454309
  ensembl transcript: ENST00000569552
  gene symbol: LRRC36
  hgvsc: ENST00000569552.1:c.56G>A
  hgvsp: ENSP00000454309.1:p.Gly19Glu
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000563303
  gene symbol: LRRC36
  hgvsc: ENST00000563303.1:n.467G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000456814
  ensembl transcript: ENST00000569499
  gene symbol: LRRC36
  hgvsc: ENST00000569499.2:c.-10G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455211
  ensembl transcript: ENST00000567211
  gene symbol: LRRC36
  hgvsc: ENST00000567211.1:c.56G>A
  hgvsp: ENSP00000455211.1:p.Gly19Glu
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000464367
  ensembl transcript: ENST00000568804
  gene symbol: LRRC36
  hgvsc: ENST00000568804.2:c.-10G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000411122
  ensembl transcript: ENST00000435835
  gene symbol: LRRC36
  hgvsc: ENST00000435835.3:c.132G>A
  hgvsp: ENST00000435835.3:c.132G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000159708
  ensembl transcript: ENST00000569228
  gene symbol: LRRC36
  hgvsc: ENST00000569228.2:n.475G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000445861
  ensembl transcript: ENST00000541146
  gene symbol: LRRC36
  hgvsc: ENST00000541146.1:c.-440G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455103
  ensembl transcript: ENST00000563189
  gene symbol: LRRC36
  hgvsc: ENST00000563189.1:c.132G>A
  hgvsp: ENST00000563189.1:c.132G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000454794
  ensembl transcript: ENST00000570075
  gene symbol: LRRC36
  hgvsc: ENST00000570075.1:c.*250G>A
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000329943
  ensembl transcript: ENST00000329956
  gene symbol: LRRC36
  hgvsc: ENST00000329956.6:c.495G>A
  hgvsp: ENST00000329956.6:c.495G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455018
  ensembl transcript: ENST00000568010
  gene symbol: LRRC36
  hgvsc: ENST00000568010.1:c.132G>A
  hgvsp: ENST00000568010.1:c.132G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000159708
  ensembl protein: ENSP00000455799
  ensembl transcript: ENST00000567723
  gene symbol: LRRC36
  hgvsc: ENST00000567723.1:c.132G>A
  hgvsp: ENST00000567723.1:c.132G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25615
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Gly19Glu
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 193
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3326
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3185
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3179
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4888
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6712
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17128
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4270
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13832
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 88
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2090
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10212
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.145615791732227e-4
allele num: 13982
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65728
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.3318e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.055676e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.89e0

MQRankSum
type: SiteQuality
SIO_000300: -6.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.82e-1

QD
type: SiteQuality
SIO_000300: 1.35e1

VQSLOD
type: SiteQuality
SIO_000300: -1.578e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.64e-1

GenotypeQuality
all individuals: 310
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 612
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3391
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 641
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4269
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3172
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4882
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13831
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 16816
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6684
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.047015448368323e-5
allele num: 65638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13756
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10188
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.41e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.512e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.08e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.18e-1

MQ
type: SiteQuality
SIO_000300: 5.921e1

VQSLOD
type: SiteQuality
SIO_000300: -3.327e0

DP
type: SiteQuality
SIO_000300: 2.051358e6

QD
type: SiteQuality
SIO_000300: 2.757e1

GenotypeQuality
all individuals: 3448
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13832
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 606
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6683
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4883
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3185
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2087
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16874
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.093102607847916e-5
allele num: 65648
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.817396426467701e-5
allele num: 10186
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13764
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.299e1

MQRankSum
type: SiteQuality
SIO_000300: 1.13e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.91e0

VQSLOD
type: SiteQuality
SIO_000300: 3.67e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.0e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 2.050888e6

GenotypeQuality
all individuals: 3476
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 669
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3165
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3185
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4270
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6652
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4876
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2086
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159017153453871e-4
allele num: 8628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10178
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.041e0

FS
type: SiteQuality
SIO_000300: 4.884e0

VQSLOD
type: SiteQuality
SIO_000300: -2.805e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.08e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.6e-2

DP
type: SiteQuality
SIO_000300: 2.048114e6

GenotypeQuality
all individuals: 15734
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3609
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3174
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4821
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2081
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3110
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6500
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13815
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4250
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12824
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65312
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10104
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160631383472609e-4
allele num: 8616
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.828e1

VQSLOD
type: SiteQuality
SIO_000300: -2.911e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.055e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 4.8e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.89e0

DP
type: SiteQuality
SIO_000300: 2.030665e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.654e0

QD
type: SiteQuality
SIO_000300: 1.148e1

GenotypeQuality
all individuals: 96
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6357
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 816
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 972
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3079
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2077
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4798
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15155
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13806
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3609
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.514692517418964e-4
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.066732090284593e-5
allele num: 65216
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10068
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.175e1

MQ
type: SiteQuality
SIO_000300: 5.969e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.91e0

DP
type: SiteQuality
SIO_000300: 2.022493e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 8.01e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.3e-2

GenotypeQuality
all individuals: 4193
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2694
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1535
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3160
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 859
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1692
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2916
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2060
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1755
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4709
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1193
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5477
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.544306143249838e-5
allele num: 64754
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9970
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11698
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.023e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.2e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.901e1

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.03e-1

QD
type: SiteQuality
SIO_000300: 6.08e0

DP
type: SiteQuality
SIO_000300: 1.971179e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

GenotypeQuality
all individuals: 1718
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2917
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1227
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4688
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2491
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1025
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2576
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1553
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4183
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2060
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13802
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3159
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2578
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5379
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9944
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11658
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.165229550221394e-4
allele num: 8582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64690
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e0

QD
type: SiteQuality
SIO_000300: 1.71e1

MQRankSum
type: SiteQuality
SIO_000300: 2.11e0

DP
type: SiteQuality
SIO_000300: 1.967143e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.808e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e0

VQSLOD
type: SiteQuality
SIO_000300: -1.438e0

GenotypeDepth
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MQ
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African
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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South Asian
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Latino
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allele num: 11524
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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East Asian
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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FS
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VQSLOD
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MQ
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ClippingRankSum
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DP
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BaseQRankSum
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QD
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GenotypeDepth
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variant carriers: 163

GenotypeDepth
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variant carriers: 7

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 1762

GenotypeDepth
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GenotypeDepth
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variant carriers: 710

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 471

GenotypeDepth
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GenotypeDepth
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variant carriers: 805

GenotypeDepth
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variant carriers: 579

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 3
allele frequency: 3.469010175763182e-4
allele num: 8648
num of homozygotes: 0

African
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allele count: 181
allele frequency: 1.740384615384616e-2
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Other
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allele frequency: 6.277533039647577e-2
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South Asian
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allele frequency: 4.284329172221549e-2
allele num: 16502
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Latino
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allele count: 247
allele frequency: 2.143353002429712e-2
allele num: 11524
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European (Finnish)
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allele count: 605
allele frequency: 9.14726338070759e-2
allele num: 6614
num of homozygotes: 32

European (Non-Finnish)
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allele count: 6799
allele frequency: 1.019370895679031e-1
allele num: 66698
num of homozygotes: 356

MQ
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InbreedingCoeff
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QD
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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SIO_000300: 2.11e0

MQRankSum
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SIO_000300: 9.2e-2

DP
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SIO_000300: 2.127841e6

FS
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SIO_000300: 5.8e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.499295331194339e-5
allele num: 66698
num of homozygotes: 0

Latino
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allele count: 0
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num of homozygotes: 0

African
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allele count: 0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
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num of homozygotes: 0

South Asian
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Other
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ReadPosRankSum
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SIO_000300: 5.34e-1

QD
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MQ
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DP
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VQSLOD
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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SIO_000300: 2.11e0

FS
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SIO_000300: 5.8e-1

ClippingRankSum
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SIO_000300: -4.53e-1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 1
allele frequency: 8.670019074041963e-5
allele num: 11534
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
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num of homozygotes: 0

Other
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African
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

BaseQRankSum
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QD
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MQRankSum
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VQSLOD
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FS
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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DP
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MQ
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.997691777331455e-5
allele num: 66718
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
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East Asian
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Other
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MQRankSum
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SIO_000300: 1.21e0

DP
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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QD
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FS
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 6

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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African
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European (Finnish)
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Latino
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South Asian
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InbreedingCoeff
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FS
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VQSLOD
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DP
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BaseQRankSum
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ClippingRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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South Asian
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MQ
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MQRankSum
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FS
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VQSLOD
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QD
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BaseQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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East Asian
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South Asian
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European (Finnish)
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MQ
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ReadPosRankSum
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MQRankSum
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DP
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VQSLOD
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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African
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European (Finnish)
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East Asian
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QD
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DP
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VQSLOD
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MQRankSum
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MQ
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FS
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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European (Finnish)
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South Asian
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African
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ClippingRankSum
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InbreedingCoeff
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Non-Finnish)
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MQRankSum
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DP
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VQSLOD
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InbreedingCoeff
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MQ
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ReadPosRankSum
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QD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Latino
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European (Non-Finnish)
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South Asian
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MQ
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MQRankSum
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InbreedingCoeff
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DP
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VQSLOD
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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European (Non-Finnish)
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African
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Other
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East Asian
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FS
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DP
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VQSLOD
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QD
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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European (Finnish)
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East Asian
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DP
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VQSLOD
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QD
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FS
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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Latino
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African
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South Asian
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MQ
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FS
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DP
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MQRankSum
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ReadPosRankSum
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GenotypeDepth
all individuals: 290
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 65
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 926
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 980
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2310
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25964
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 53
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1386
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 111
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1472
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 377
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 202
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 72
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5275
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1125
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3941
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2132
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43720
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 750
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 949
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1309
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10182
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16286
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.525692664469669e-5
allele num: 65544
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11362
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.646341e6

MQRankSum
type: SiteQuality
SIO_000300: -7.6e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.365e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.205e0

VQSLOD
type: SiteQuality
SIO_000300: 1.57e0

GenotypeDepth
all individuals: 343
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 33
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 924
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 388
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 202
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 53
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1923
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2294
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6608
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1312
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1477
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 377
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 18602
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 145
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 72
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 589
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 61
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25124
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 111
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 65
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 939
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 747
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1098
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5171
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2888
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42802
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3935
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 279
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1277
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11272
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10118
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.535437906891045e-5
allele num: 65128
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16218
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.161e1

MQRankSum
type: SiteQuality
SIO_000300: 5.56e-1

FS
type: SiteQuality
SIO_000300: 3.012e0

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.938e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.951e0

DP
type: SiteQuality
SIO_000300: 1.635017e6

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000159708
ensembl protein: ENSP00000456347
ensembl transcript: ENST00000561948
gene symbol: LRRC36
hgvsc: ENST00000561948.1:c.71-15999G>A
variant of: http://identifiers.org/hgnc/25615

GenotypeDepth
all individuals: 61
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 924
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 65
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 607
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2282
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 2114
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 23356
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 589
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 59
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 144
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 201
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18150
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3345
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 72
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1455
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 111
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 53
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6394
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 377
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 342
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3933
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 90
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4885
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 933
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 572
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40664
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4747
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1037
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1242
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 744
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11114
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16006
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8290
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9986
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.118178983473651e-5
allele num: 64140
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.7e-1

FS
type: SiteQuality
SIO_000300: 1.222e0

QD
type: SiteQuality
SIO_000300: 1.272e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 9.95e-1

DP
type: SiteQuality
SIO_000300: 1.603112e6

MQRankSum
type: SiteQuality
SIO_000300: 1.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.83e-1

GenotypeDepth
all individuals: 724
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 145
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 201
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2557
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 377
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 22419
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 65
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6266
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 17787
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 342
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2261
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 4205
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 111
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 93
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 61
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 923
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 72
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1450
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 53
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 588
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 706
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5812
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39257
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1229
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3936
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1033
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 474
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 933
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4832
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11012
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15922
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.862129693691427e-5
allele num: 63596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8204
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9912
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.882e0

DP
type: SiteQuality
SIO_000300: 1.583416e6

BaseQRankSum
type: SiteQuality
SIO_000300: 8.9e-1

QD
type: SiteQuality
SIO_000300: 1.454e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.17e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.689e1

VQSLOD
type: SiteQuality
SIO_000300: 3.46e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

GenotypeDepth
all individuals: 2003
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 582
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6076
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 72
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 65
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4549
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 53
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 144
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 111
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 61
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14070
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2546
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 201
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 377
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 342
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1380
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1234
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 901
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3931
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 106
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3059
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1113
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25153
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 822
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2849
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3231
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14923
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 608
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 1.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7424
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10036
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15220
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.090988435522584e-4
allele num: 9166
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6250
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58722
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.09e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e0

QD
type: SiteQuality
SIO_000300: 8.029999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 9.29e-1

MQ
type: SiteQuality
SIO_000300: 5.94e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.3e0

DP
type: SiteQuality
SIO_000300: 1.371824e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.27e-1

GenotypeDepth
all individuals: 510
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 14070
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 53
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6076
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2546
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4549
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 582
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1380
bin: 4.25e1
variant carriers: 0

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African
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East Asian
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European (Non-Finnish)
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MQ
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FS
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QD
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DP
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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European (Finnish)
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East Asian
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FS
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VQSLOD
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MQ
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DP
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GenotypeQuality
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East Asian
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African
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South Asian
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European (Non-Finnish)
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FS
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VQSLOD
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MQ
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GenotypeQuality
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Latino
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European (Finnish)
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South Asian
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East Asian
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QD
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MQ
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FS
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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East Asian
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African
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InbreedingCoeff
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QD
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MQ
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
all individuals: 3925
bin: 9.75e1
variant carriers: 3

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 746
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6262
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8336
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50910
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5926
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.427551748750892e-4
allele num: 14010
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8462
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.86e0

MQ
type: SiteQuality
SIO_000300: 5.018e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.7e-2

FS
type: SiteQuality
SIO_000300: 3.409e0

DP
type: SiteQuality
SIO_000300: 1.085147e6

MQRankSum
type: SiteQuality
SIO_000300: -1.307e0

QD
type: SiteQuality
SIO_000300: 6.3e0

GenotypeDepth
all individuals: 72
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1344
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2066
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11648
bin: 1.75e1
variant carriers: 0

GenotypeDepth
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bin: 5.25e1
variant carriers: 0

GenotypeDepth
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bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 65
bin: 8.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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bin: 2.5e0
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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bin: 2.75e1
variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 730
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48234
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13636
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.2531328320802e-4
allele num: 7980
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5856
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5750
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.75e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.085e1

DP
type: SiteQuality
SIO_000300: 1.071156e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.200000000000001e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.56e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.66e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.620000000000001e-1

GenotypeDepth
all individuals: 668
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 791
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1920
bin: 7.5e0
variant carriers: 4

GenotypeDepth
all individuals: 10555
bin: 2.25e1
variant carriers: 26

GenotypeDepth
all individuals: 9014
bin: 3.25e1
variant carriers: 32

GenotypeDepth
all individuals: 316
bin: 6.75e1
variant carriers: 3

GenotypeDepth
all individuals: 4839
bin: 3.75e1
variant carriers: 11

GenotypeDepth
all individuals: 8984
bin: 1.75e1
variant carriers: 19

GenotypeDepth
all individuals: 11896
bin: 2.75e1
variant carriers: 28

GenotypeDepth
all individuals: 137
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variant carriers: 0

GenotypeDepth
all individuals: 256
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variant carriers: 3

GenotypeDepth
all individuals: 161
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variant carriers: 0

GenotypeDepth
all individuals: 123
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variant carriers: 0

GenotypeDepth
all individuals: 212
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variant carriers: 1

GenotypeDepth
all individuals: 947
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variant carriers: 0

GenotypeDepth
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variant carriers: 3

GenotypeQuality
all individuals: 1491
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 4465
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variant carriers: 1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 8094
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 151

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1576
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variant carriers: 0

GenotypeQuality
all individuals: 1145
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15144
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.278159213212098e-5
allele num: 10778
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7646
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.571428571428571e-3
allele num: 840
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 74
allele frequency: 1.147286821705426e-2
allele num: 6450
num of homozygotes: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8060
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 78
allele frequency: 1.259161204920415e-3
allele num: 61946
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 7.7e-2

MQ
type: SiteQuality
SIO_000300: 5.78e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.93e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.36e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.318e1

DP
type: SiteQuality
SIO_000300: 1.732232e6

GenotypeDepth
all individuals: 3471
bin: 7.5e0
variant carriers: 1349

GenotypeDepth
all individuals: 473
bin: 5.25e1
variant carriers: 44

GenotypeDepth
all individuals: 922
bin: 4.75e1
variant carriers: 46

GenotypeDepth
all individuals: 52
bin: 9.25e1
variant carriers: 6

GenotypeDepth
all individuals: 6653
bin: 3.25e1
variant carriers: 230

GenotypeDepth
all individuals: 12252
bin: 2.25e1
variant carriers: 637

GenotypeDepth
all individuals: 218
bin: 6.25e1
variant carriers: 31

GenotypeDepth
all individuals: 6501
bin: 1.25e1
variant carriers: 1223

GenotypeDepth
all individuals: 10181
bin: 2.75e1
variant carriers: 408

GenotypeDepth
all individuals: 3708
bin: 3.75e1
variant carriers: 132

GenotypeDepth
all individuals: 58
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variant carriers: 6

GenotypeDepth
all individuals: 105
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variant carriers: 11

GenotypeDepth
all individuals: 73
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variant carriers: 6

GenotypeDepth
all individuals: 151
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variant carriers: 4

GenotypeDepth
all individuals: 169
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variant carriers: 18

GenotypeDepth
all individuals: 319
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variant carriers: 48

GenotypeQuality
all individuals: 2307
bin: 7.5e0
variant carriers: 353

GenotypeQuality
all individuals: 1742
bin: 3.75e1
variant carriers: 283

GenotypeQuality
all individuals: 1525
bin: 5.25e1
variant carriers: 270

GenotypeQuality
all individuals: 1749
bin: 3.25e1
variant carriers: 301

GenotypeQuality
all individuals: 28752
bin: 2.5e0
variant carriers: 284

GenotypeQuality
all individuals: 1618
bin: 1.25e1
variant carriers: 319

GenotypeQuality
all individuals: 566
bin: 9.25e1
variant carriers: 62

GenotypeQuality
all individuals: 2074
bin: 2.25e1
variant carriers: 314

GenotypeQuality
all individuals: 1249
bin: 5.75e1
variant carriers: 184

GenotypeQuality
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bin: 4.25e1
variant carriers: 336

GenotypeQuality
all individuals: 854
bin: 7.75e1
variant carriers: 91

GenotypeQuality
all individuals: 1561
bin: 1.75e1
variant carriers: 317

GenotypeQuality
all individuals: 1008
bin: 6.75e1
variant carriers: 154

GenotypeQuality
all individuals: 1656
bin: 4.75e1
variant carriers: 340

GenotypeQuality
all individuals: 583
bin: 8.75e1
variant carriers: 88

GenotypeQuality
all individuals: 5076
bin: 9.75e1
variant carriers: 923

GenotypeQuality
all individuals: 855
bin: 7.25e1
variant carriers: 98

GenotypeQuality
all individuals: 1785
bin: 2.75e1
variant carriers: 291

GenotypeQuality
all individuals: 1275
bin: 6.25e1
variant carriers: 176

GenotypeQuality
all individuals: 679
bin: 8.25e1
variant carriers: 95

African
type: Population
allele count: 557
allele frequency: 1.867873910127431e-1
allele num: 2982
num of homozygotes: 46

European (Finnish)
type: Population
allele count: 171
allele frequency: 5.065165876777251e-2
allele num: 3376
num of homozygotes: 0

Other
type: Population
allele count: 25
allele frequency: 7.102272727272728e-2
allele num: 352
num of homozygotes: 0

South Asian
type: Population
allele count: 260
allele frequency: 5.567451820128479e-2
allele num: 4670
num of homozygotes: 12

European (Non-Finnish)
type: Population
allele count: 1857
allele frequency: 6.561373754504982e-2
allele num: 28302
num of homozygotes: 8

Latino
type: Population
allele count: 92
allele frequency: 2.954399486191394e-2
allele num: 3114
num of homozygotes: 1

East Asian
type: Population
allele count: 68
allele frequency: 3.307392996108949e-2
allele num: 2056
num of homozygotes: 1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.86e0

MQ
type: SiteQuality
SIO_000300: 5.845e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.6e-2

DP
type: SiteQuality
SIO_000300: 1.456454e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.432e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.419999999999999e-1

QD
type: SiteQuality
SIO_000300: 3.42e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.39e-1

GenotypeDepth
all individuals: 6501
bin: 1.25e1
variant carriers: 218

GenotypeDepth
all individuals: 73
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variant carriers: 3

GenotypeDepth
all individuals: 169
bin: 6.75e1
variant carriers: 6

GenotypeDepth
all individuals: 473
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variant carriers: 12

GenotypeDepth
all individuals: 922
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variant carriers: 15

GenotypeDepth
all individuals: 10646
bin: 1.75e1
variant carriers: 199

GenotypeDepth
all individuals: 151
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variant carriers: 0

GenotypeDepth
all individuals: 3471
bin: 7.5e0
variant carriers: 187

GenotypeDepth
all individuals: 12252
bin: 2.25e1
variant carriers: 114

GenotypeDepth
all individuals: 6653
bin: 3.25e1
variant carriers: 37

GenotypeDepth
all individuals: 105
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variant carriers: 3

GenotypeDepth
all individuals: 1835
bin: 4.25e1
variant carriers: 16

GenotypeDepth
all individuals: 52
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variant carriers: 1

GenotypeDepth
all individuals: 218
bin: 6.25e1
variant carriers: 10

GenotypeDepth
all individuals: 3708
bin: 3.75e1
variant carriers: 27

GenotypeDepth
all individuals: 124
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variant carriers: 3

GenotypeQuality
all individuals: 1785
bin: 2.75e1
variant carriers: 46

GenotypeQuality
all individuals: 2307
bin: 7.5e0
variant carriers: 48

GenotypeQuality
all individuals: 1561
bin: 1.75e1
variant carriers: 45

GenotypeQuality
all individuals: 2074
bin: 2.25e1
variant carriers: 39

GenotypeQuality
all individuals: 5076
bin: 9.75e1
variant carriers: 278

GenotypeQuality
all individuals: 1742
bin: 3.75e1
variant carriers: 34

GenotypeQuality
all individuals: 679
bin: 8.25e1
variant carriers: 27

GenotypeQuality
all individuals: 1275
bin: 6.25e1
variant carriers: 26

GenotypeQuality
all individuals: 1525
bin: 5.25e1
variant carriers: 45

GenotypeQuality
all individuals: 1749
bin: 3.25e1
variant carriers: 43

GenotypeQuality
all individuals: 28752
bin: 2.5e0
variant carriers: 41

GenotypeQuality
all individuals: 1249
bin: 5.75e1
variant carriers: 22

GenotypeQuality
all individuals: 583
bin: 8.75e1
variant carriers: 11

GenotypeQuality
all individuals: 1656
bin: 4.75e1
variant carriers: 45

GenotypeQuality
all individuals: 1651
bin: 4.25e1
variant carriers: 42

GenotypeQuality
all individuals: 1618
bin: 1.25e1
variant carriers: 52

GenotypeQuality
all individuals: 854
bin: 7.75e1
variant carriers: 35

GenotypeQuality
all individuals: 566
bin: 9.25e1
variant carriers: 20

GenotypeQuality
all individuals: 855
bin: 7.25e1
variant carriers: 31

GenotypeQuality
all individuals: 1008
bin: 6.75e1
variant carriers: 21

South Asian
type: Population
allele count: 36
allele frequency: 7.708779443254818e-3
allele num: 4670
num of homozygotes: 1

Latino
type: Population
allele count: 21
allele frequency: 6.74373795761079e-3
allele num: 3114
num of homozygotes: 2

European (Finnish)
type: Population
allele count: 8
allele frequency: 2.369668246445498e-3
allele num: 3376
num of homozygotes: 1

East Asian
type: Population
allele count: 4
allele frequency: 1.945525291828794e-3
allele num: 2056
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 1.136363636363636e-2
allele num: 352
num of homozygotes: 0

African
type: Population
allele count: 488
allele frequency: 1.636485580147552e-1
allele num: 2982
num of homozygotes: 52

European (Non-Finnish)
type: Population
allele count: 110
allele frequency: 3.886651120062186e-3
allele num: 28302
num of homozygotes: 1

MQRankSum
type: SiteQuality
SIO_000300: 2.34e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.86e0

QD
type: SiteQuality
SIO_000300: 3.42e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.6e-2

DP
type: SiteQuality
SIO_000300: 1.456454e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.432e-1

MQ
type: SiteQuality
SIO_000300: 5.845e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.419999999999999e-1

GenotypeDepth
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bin: 9.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 29

GenotypeDepth
all individuals: 3708
bin: 3.75e1
variant carriers: 5

GenotypeDepth
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variant carriers: 31

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 14

GenotypeDepth
all individuals: 654
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GenotypeDepth
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GenotypeDepth
all individuals: 52
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GenotypeDepth
all individuals: 105
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GenotypeDepth
all individuals: 319
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GenotypeDepth
all individuals: 218
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GenotypeDepth
all individuals: 124
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GenotypeDepth
all individuals: 1835
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 922
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variant carriers: 3

GenotypeQuality
all individuals: 854
bin: 7.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1008
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GenotypeQuality
all individuals: 1275
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GenotypeQuality
all individuals: 679
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GenotypeQuality
all individuals: 1785
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1651
bin: 4.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1742
bin: 3.75e1
variant carriers: 8

GenotypeQuality
all individuals: 1249
bin: 5.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1618
bin: 1.25e1
variant carriers: 9

GenotypeQuality
all individuals: 28752
bin: 2.5e0
variant carriers: 8

GenotypeQuality
all individuals: 1656
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1749
bin: 3.25e1
variant carriers: 5

GenotypeQuality
all individuals: 2074
bin: 2.25e1
variant carriers: 7

GenotypeQuality
all individuals: 2307
bin: 7.5e0
variant carriers: 3

GenotypeQuality
all individuals: 5076
bin: 9.75e1
variant carriers: 29

GenotypeQuality
all individuals: 1561
bin: 1.75e1
variant carriers: 5

GenotypeQuality
all individuals: 583
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 855
bin: 7.25e1
variant carriers: 6

GenotypeQuality
all individuals: 1525
bin: 5.25e1
variant carriers: 5

GenotypeQuality
all individuals: 566
bin: 9.25e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2056
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.840909090909091e-3
allele num: 352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 2.473323440039573e-4
allele num: 28302
num of homozygotes: 0

African
type: Population
allele count: 64
allele frequency: 2.146210596914822e-2
allele num: 2982
num of homozygotes: 6

South Asian
type: Population
allele count: 4
allele frequency: 8.565310492505353e-4
allele num: 4670
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 9.633911368015414e-4
allele num: 3114
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.42e0

VQSLOD
type: SiteQuality
SIO_000300: 2.86e0

MQ
type: SiteQuality
SIO_000300: 5.845e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.34e-1

DP
type: SiteQuality
SIO_000300: 1.456454e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.432e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.419999999999999e-1

GenotypeDepth
all individuals: 10646
bin: 1.75e1
variant carriers: 3847

GenotypeDepth
all individuals: 73
bin: 8.25e1
variant carriers: 42

GenotypeDepth
all individuals: 151
bin: 9.75e1
variant carriers: 46

GenotypeDepth
all individuals: 169
bin: 6.75e1
variant carriers: 75

GenotypeDepth
all individuals: 124
bin: 7.25e1
variant carriers: 59

GenotypeDepth
all individuals: 10181
bin: 2.75e1
variant carriers: 2748

GenotypeDepth
all individuals: 319
bin: 5.75e1
variant carriers: 113

GenotypeDepth
all individuals: 52
bin: 9.25e1
variant carriers: 23

GenotypeDepth
all individuals: 654
bin: 2.5e0
variant carriers: 12

GenotypeDepth
all individuals: 218
bin: 6.25e1
variant carriers: 88

GenotypeDepth
all individuals: 6653
bin: 3.25e1
variant carriers: 1379

GenotypeDepth
all individuals: 12252
bin: 2.25e1
variant carriers: 3807

GenotypeDepth
all individuals: 3471
bin: 7.5e0
variant carriers: 540

GenotypeDepth
all individuals: 1835
bin: 4.25e1
variant carriers: 391

GenotypeDepth
all individuals: 473
bin: 5.25e1
variant carriers: 157

GenotypeDepth
all individuals: 58
bin: 8.75e1
variant carriers: 33

GenotypeQuality
all individuals: 1749
bin: 3.25e1
variant carriers: 866

GenotypeQuality
all individuals: 28752
bin: 2.5e0
variant carriers: 415

GenotypeQuality
all individuals: 5076
bin: 9.75e1
variant carriers: 3121

GenotypeQuality
all individuals: 1618
bin: 1.25e1
variant carriers: 600

GenotypeQuality
all individuals: 2307
bin: 7.5e0
variant carriers: 524

GenotypeQuality
all individuals: 854
bin: 7.75e1
variant carriers: 598

GenotypeQuality
all individuals: 1275
bin: 6.25e1
variant carriers: 777

GenotypeQuality
all individuals: 2074
bin: 2.25e1
variant carriers: 871

GenotypeQuality
all individuals: 566
bin: 9.25e1
variant carriers: 420

GenotypeQuality
all individuals: 1008
bin: 6.75e1
variant carriers: 662

GenotypeQuality
all individuals: 1651
bin: 4.25e1
variant carriers: 982

GenotypeQuality
all individuals: 1249
bin: 5.75e1
variant carriers: 842

GenotypeQuality
all individuals: 1656
bin: 4.75e1
variant carriers: 971

GenotypeQuality
all individuals: 583
bin: 8.75e1
variant carriers: 411

GenotypeQuality
all individuals: 1742
bin: 3.75e1
variant carriers: 975

GenotypeQuality
all individuals: 1785
bin: 2.75e1
variant carriers: 890

GenotypeQuality
all individuals: 1561
bin: 1.75e1
variant carriers: 695

GenotypeQuality
all individuals: 855
bin: 7.25e1
variant carriers: 595

GenotypeQuality
all individuals: 1525
bin: 5.25e1
variant carriers: 937

GenotypeQuality
all individuals: 679
bin: 8.25e1
variant carriers: 450

Other
type: Population
allele count: 102
allele frequency: 2.897727272727273e-1
allele num: 352
num of homozygotes: 0

South Asian
type: Population
allele count: 1422
allele frequency: 3.044967880085653e-1
allele num: 4670
num of homozygotes: 3

Latino
type: Population
allele count: 834
allele frequency: 2.678227360308285e-1
allele num: 3114
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9467
allele frequency: 3.34499328669352e-1
allele num: 28302
num of homozygotes: 0

African
type: Population
allele count: 474
allele frequency: 1.58953722334004e-1
allele num: 2982
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 971
allele frequency: 2.876184834123223e-1
allele num: 3376
num of homozygotes: 0

East Asian
type: Population
allele count: 619
allele frequency: 3.010700389105058e-1
allele num: 2056
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.419999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.86e0

MQ
type: SiteQuality
SIO_000300: 5.845e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.6e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.34e-1

QD
type: SiteQuality
SIO_000300: 3.42e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.39e-1

DP
type: SiteQuality
SIO_000300: 1.456454e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.432e-1

GenotypeDepth
all individuals: 6501
bin: 1.25e1
variant carriers: 314

GenotypeDepth
all individuals: 10181
bin: 2.75e1
variant carriers: 465

GenotypeDepth
all individuals: 3471
bin: 7.5e0
variant carriers: 100

GenotypeDepth
all individuals: 6653
bin: 3.25e1
variant carriers: 256

GenotypeDepth
all individuals: 52
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 169
bin: 6.75e1
variant carriers: 6

GenotypeDepth
all individuals: 473
bin: 5.25e1
variant carriers: 21

GenotypeDepth
all individuals: 124
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variant carriers: 4

GenotypeDepth
all individuals: 10646
bin: 1.75e1
variant carriers: 584

GenotypeDepth
all individuals: 73
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 922
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variant carriers: 38

GenotypeDepth
all individuals: 3708
bin: 3.75e1
variant carriers: 107

GenotypeDepth
all individuals: 218
bin: 6.25e1
variant carriers: 7

GenotypeDepth
all individuals: 319
bin: 5.75e1
variant carriers: 21

GenotypeDepth
all individuals: 105
bin: 7.75e1
variant carriers: 2

GenotypeDepth
all individuals: 1835
bin: 4.25e1
variant carriers: 38

GenotypeQuality
all individuals: 1561
bin: 1.75e1
variant carriers: 84

GenotypeQuality
all individuals: 1656
bin: 4.75e1
variant carriers: 112

GenotypeQuality
all individuals: 1525
bin: 5.25e1
variant carriers: 103

GenotypeQuality
all individuals: 854
bin: 7.75e1
variant carriers: 89

GenotypeQuality
all individuals: 5076
bin: 9.75e1
variant carriers: 809

GenotypeQuality
all individuals: 1785
bin: 2.75e1
variant carriers: 98

GenotypeQuality
all individuals: 1008
bin: 6.75e1
variant carriers: 87

GenotypeQuality
all individuals: 1749
bin: 3.25e1
variant carriers: 110

GenotypeQuality
all individuals: 2074
bin: 2.25e1
variant carriers: 105

GenotypeQuality
all individuals: 28752
bin: 2.5e0
variant carriers: 99

GenotypeQuality
all individuals: 2307
bin: 7.5e0
variant carriers: 97

GenotypeQuality
all individuals: 1249
bin: 5.75e1
variant carriers: 110

GenotypeQuality
all individuals: 566
bin: 9.25e1
variant carriers: 53

GenotypeQuality
all individuals: 679
bin: 8.25e1
variant carriers: 94

GenotypeQuality
all individuals: 583
bin: 8.75e1
variant carriers: 56

GenotypeQuality
all individuals: 855
bin: 7.25e1
variant carriers: 88

GenotypeQuality
all individuals: 1275
bin: 6.25e1
variant carriers: 124

GenotypeQuality
all individuals: 1618
bin: 1.25e1
variant carriers: 94

GenotypeQuality
all individuals: 1742
bin: 3.75e1
variant carriers: 96

GenotypeQuality
all individuals: 1651
bin: 4.25e1
variant carriers: 119

African
type: Population
allele count: 58
allele frequency: 1.945003353454058e-2
allele num: 2982
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 418
allele frequency: 1.238151658767773e-1
allele num: 3376
num of homozygotes: 4

European (Non-Finnish)
type: Population
allele count: 1123
allele frequency: 3.967917461663487e-2
allele num: 28302
num of homozygotes: 1

Other
type: Population
allele count: 22
allele frequency: 6.25e-2
allele num: 352
num of homozygotes: 0

Latino
type: Population
allele count: 152
allele frequency: 4.881181759794476e-2
allele num: 3114
num of homozygotes: 0

East Asian
type: Population
allele count: 85
allele frequency: 4.134241245136187e-2
allele num: 2056
num of homozygotes: 0

South Asian
type: Population
allele count: 306
allele frequency: 6.552462526766595e-2
allele num: 4670
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.456454e6

MQRankSum
type: SiteQuality
SIO_000300: 2.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.432e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.86e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.419999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.39e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.845e1

QD
type: SiteQuality
SIO_000300: 3.42e0

European (Finnish)
type: Population
allele count: 5
allele frequency: 1.481042654028436e-3
allele num: 3376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 352
num of homozygotes: 0

South Asian
type: Population
allele count: 20
allele frequency: 4.282655246252677e-3
allele num: 4670
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.6e-2

MQ
type: SiteQuality
SIO_000300: 5.845e1

MQRankSum
type: SiteQuality
SIO_000300: 2.34e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.419999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.432e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.86e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.39e-1

QD
type: SiteQuality
SIO_000300: 3.42e0

DP
type: SiteQuality
SIO_000300: 1.456454e6

GenotypeDepth
all individuals: 8389
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9876
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1092
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 302
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 445
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variant carriers: 0

GenotypeDepth
all individuals: 3195
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variant carriers: 1

GenotypeDepth
all individuals: 193
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variant carriers: 0

GenotypeDepth
all individuals: 541
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variant carriers: 0

GenotypeDepth
all individuals: 9370
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variant carriers: 0

GenotypeDepth
all individuals: 10199
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variant carriers: 0

GenotypeDepth
all individuals: 4435
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variant carriers: 0

GenotypeDepth
all individuals: 161
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variant carriers: 0

GenotypeDepth
all individuals: 113
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variant carriers: 0

GenotypeDepth
all individuals: 140
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variant carriers: 0

GenotypeDepth
all individuals: 255
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variant carriers: 0

GenotypeDepth
all individuals: 5494
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variant carriers: 0

GenotypeQuality
all individuals: 667
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variant carriers: 0

GenotypeQuality
all individuals: 828
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variant carriers: 0

GenotypeQuality
all individuals: 3435
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variant carriers: 0

GenotypeQuality
all individuals: 1919
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variant carriers: 1

GenotypeQuality
all individuals: 930
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variant carriers: 0

GenotypeQuality
all individuals: 11561
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variant carriers: 0

GenotypeQuality
all individuals: 13146
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variant carriers: 0

GenotypeQuality
all individuals: 814
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variant carriers: 0

GenotypeQuality
all individuals: 1507
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variant carriers: 0

GenotypeQuality
all individuals: 3073
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1003
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1941
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variant carriers: 0

GenotypeQuality
all individuals: 1878
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3144
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 580
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4864
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.323420074349442e-4
allele num: 4304
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41822
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.927e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.61e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.947e0

VQSLOD
type: SiteQuality
SIO_000300: 7.6e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.696602e6

MQRankSum
type: SiteQuality
SIO_000300: 4.61e-1

MQ
type: SiteQuality
SIO_000300: 5.769e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.05e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.56e-1

GenotypeDepth
all individuals: 1902
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 461
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 192
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7433
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 158
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variant carriers: 1

GenotypeDepth
all individuals: 3311
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variant carriers: 0

GenotypeDepth
all individuals: 3186
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variant carriers: 1

GenotypeDepth
all individuals: 7399
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variant carriers: 0

GenotypeDepth
all individuals: 8885
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variant carriers: 0

GenotypeDepth
all individuals: 426
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variant carriers: 1

GenotypeDepth
all individuals: 9439
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variant carriers: 3

GenotypeDepth
all individuals: 264
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variant carriers: 0

GenotypeDepth
all individuals: 715
bin: 5.75e1
variant carriers: 2

GenotypeDepth
all individuals: 4847
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 303
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variant carriers: 0

GenotypeDepth
all individuals: 9448
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variant carriers: 0

GenotypeQuality
all individuals: 244
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variant carriers: 0

GenotypeQuality
all individuals: 63
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variant carriers: 0

GenotypeQuality
all individuals: 171
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variant carriers: 0

GenotypeQuality
all individuals: 595
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variant carriers: 0

GenotypeQuality
all individuals: 469
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variant carriers: 0

GenotypeQuality
all individuals: 2034
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 29631
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3089
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variant carriers: 0

GenotypeQuality
all individuals: 1044
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variant carriers: 0

GenotypeQuality
all individuals: 3886
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GenotypeQuality
all individuals: 11047
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 674
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 140
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variant carriers: 0

GenotypeQuality
all individuals: 1045
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GenotypeQuality
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GenotypeQuality
all individuals: 336
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GenotypeQuality
all individuals: 425
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variant carriers: 1

GenotypeQuality
all individuals: 1930
bin: 9.75e1
variant carriers: 11

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7458
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6376
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10496
num of homozygotes: 0

African
type: Population
allele count: 13
allele frequency: 1.484696208314299e-3
allele num: 8756
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60104
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.625e1

VQSLOD
type: SiteQuality
SIO_000300: -3.2e0

FS
type: SiteQuality
SIO_000300: 4.8668e1

DP
type: SiteQuality
SIO_000300: 1.630037e6

ClippingRankSum
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SIO_000300: 3.87e0

MQRankSum
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SIO_000300: -4.23e-1

QD
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SIO_000300: 9.32e0

ReadPosRankSum
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SIO_000300: -2.246e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 6.54e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 6127
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GenotypeDepth
all individuals: 5576
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GenotypeDepth
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GenotypeDepth
all individuals: 13644
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variant carriers: 2

GenotypeDepth
all individuals: 532
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GenotypeDepth
all individuals: 257
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GenotypeDepth
all individuals: 1044
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GenotypeDepth
all individuals: 3702
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GenotypeDepth
all individuals: 8748
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GenotypeDepth
all individuals: 190
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GenotypeDepth
all individuals: 62
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GenotypeDepth
all individuals: 96
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GenotypeDepth
all individuals: 143
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GenotypeDepth
all individuals: 827
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variant carriers: 0

GenotypeQuality
all individuals: 1933
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3381
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variant carriers: 0

GenotypeQuality
all individuals: 1993
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variant carriers: 0

GenotypeQuality
all individuals: 818
bin: 7.25e1
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GenotypeQuality
all individuals: 271
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GenotypeQuality
all individuals: 460
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GenotypeQuality
all individuals: 1619
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variant carriers: 0

GenotypeQuality
all individuals: 673
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variant carriers: 0

GenotypeQuality
all individuals: 1868
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variant carriers: 0

GenotypeQuality
all individuals: 530
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variant carriers: 0

GenotypeQuality
all individuals: 22862
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GenotypeQuality
all individuals: 11897
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variant carriers: 0

GenotypeQuality
all individuals: 6161
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GenotypeQuality
all individuals: 821
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variant carriers: 0

GenotypeQuality
all individuals: 514
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variant carriers: 0

GenotypeQuality
all individuals: 1163
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1447
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 820
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variant carriers: 0

GenotypeQuality
all individuals: 560
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variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2216
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 440
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3486
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3940
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4180
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.349882302589343e-5
allele num: 37384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4298
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.74e-1

MQ
type: SiteQuality
SIO_000300: 5.919e1

VQSLOD
type: SiteQuality
SIO_000300: 3.46e0

MQRankSum
type: SiteQuality
SIO_000300: -3.82e-1

QD
type: SiteQuality
SIO_000300: 2.79e0

FS
type: SiteQuality
SIO_000300: 1.8486e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.548e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.267e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

DP
type: SiteQuality
SIO_000300: 1.298624e6

GenotypeDepth
all individuals: 13644
bin: 1.25e1
variant carriers: 24

GenotypeDepth
all individuals: 6127
bin: 7.5e0
variant carriers: 6

GenotypeDepth
all individuals: 3702
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 96
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variant carriers: 0

GenotypeDepth
all individuals: 8748
bin: 2.25e1
variant carriers: 16

GenotypeDepth
all individuals: 1044
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variant carriers: 0

GenotypeDepth
all individuals: 62
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variant carriers: 0

GenotypeDepth
all individuals: 2356
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variant carriers: 0

GenotypeDepth
all individuals: 245
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
all individuals: 143
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GenotypeDepth
all individuals: 827
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variant carriers: 0

GenotypeDepth
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variant carriers: 5

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 3381
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 1933
bin: 1.25e1
variant carriers: 6

GenotypeQuality
all individuals: 1868
bin: 2.75e1
variant carriers: 5

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 821
bin: 3.75e1
variant carriers: 7

GenotypeQuality
all individuals: 271
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variant carriers: 1

GenotypeQuality
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bin: 4.25e1
variant carriers: 6

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 4

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 1.75e1
variant carriers: 3

GenotypeQuality
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bin: 6.75e1
variant carriers: 6

GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
all individuals: 1163
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 514
bin: 5.25e1
variant carriers: 7

African
type: Population
allele count: 3
allele frequency: 1.353790613718411e-3
allele num: 2216
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 9.569377990430622e-4
allele num: 4180
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 440
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 2.008032128514056e-3
allele num: 3486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 9.306654257794323e-4
allele num: 4298
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 33
allele frequency: 8.827305799272416e-4
allele num: 37384
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 2.284263959390863e-3
allele num: 3940
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.548e-1

FS
type: SiteQuality
SIO_000300: 1.8486e1

MQ
type: SiteQuality
SIO_000300: 5.919e1

QD
type: SiteQuality
SIO_000300: 2.79e0

MQRankSum
type: SiteQuality
SIO_000300: -3.82e-1

DP
type: SiteQuality
SIO_000300: 1.298624e6

VQSLOD
type: SiteQuality
SIO_000300: 3.46e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.267e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

GenotypeDepth
all individuals: 8748
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 62
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 2356
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 96
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variant carriers: 0

GenotypeDepth
all individuals: 117
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variant carriers: 0

GenotypeQuality
all individuals: 1619
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variant carriers: 0

GenotypeQuality
all individuals: 1933
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variant carriers: 0

GenotypeQuality
all individuals: 820
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1868
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 319
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variant carriers: 0

GenotypeQuality
all individuals: 1993
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4298
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3940
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2216
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.868617326448651e-4
allele num: 3486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.674941151294672e-5
allele num: 37384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 440
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4180
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.919e1

QD
type: SiteQuality
SIO_000300: 2.79e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.74e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.46e0

DP
type: SiteQuality
SIO_000300: 1.298624e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.267e0

FS
type: SiteQuality
SIO_000300: 1.8486e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.548e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.82e-1

GenotypeDepth
all individuals: 1054
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 13238
bin: 1.75e1
variant carriers: 3

GenotypeDepth
all individuals: 535
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 6798
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
all individuals: 124
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GenotypeDepth
all individuals: 101
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GenotypeDepth
all individuals: 52
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GenotypeDepth
all individuals: 219
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GenotypeDepth
all individuals: 8540
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GenotypeDepth
all individuals: 179
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GenotypeDepth
all individuals: 364
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GenotypeQuality
all individuals: 1751
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variant carriers: 1

GenotypeQuality
all individuals: 2105
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variant carriers: 0

GenotypeQuality
all individuals: 2896
bin: 3.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 538
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variant carriers: 0

GenotypeQuality
all individuals: 3038
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.896356906292616e-5
allele num: 51330
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.448579823702253e-4
allele num: 4084
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6170
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 6.305170239596469e-4
allele num: 4758
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7934
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.943e0

BaseQRankSum
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SIO_000300: -1.985e0

DP
type: SiteQuality
SIO_000300: 1.269997e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.9e-1

MQ
type: SiteQuality
SIO_000300: 5.94e1

MQRankSum
type: SiteQuality
SIO_000300: 5.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.89e-2

FS
type: SiteQuality
SIO_000300: 1.1752e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

QD
type: SiteQuality
SIO_000300: 1.12e0

GenotypeDepth
all individuals: 14235
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 820
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1083
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1966
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GenotypeQuality
all individuals: 1666
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3431
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6170
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4758
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.948178453146308e-5
allele num: 51330
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7934
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.448579823702253e-4
allele num: 4084
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
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VQSLOD
type: SiteQuality
SIO_000300: -1.943e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.89e-2

ReadPosRankSum
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MQ
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FS
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BaseQRankSum
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ClippingRankSum
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SIO_000300: 5.9e-1

MQRankSum
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DP
type: SiteQuality
SIO_000300: 1.269997e6

QD
type: SiteQuality
SIO_000300: 1.12e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1760
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GenotypeQuality
all individuals: 2628
bin: 9.75e1
variant carriers: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11904
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.404889013767912e-4
allele num: 7118
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58008
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6172
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9818
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.37211855104281e-4
allele num: 7288
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.178e1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.6e-3

ClippingRankSum
type: SiteQuality
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BaseQRankSum
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FS
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MQRankSum
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DP
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MQ
type: SiteQuality
SIO_000300: 5.867e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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European (Non-Finnish)
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East Asian
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European (Finnish)
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African
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South Asian
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ClippingRankSum
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MQRankSum
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MQ
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VQSLOD
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FS
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DP
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ReadPosRankSum
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QD
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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African
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European (Non-Finnish)
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East Asian
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Other
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FS
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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MQ
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QD
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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Latino
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East Asian
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European (Finnish)
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African
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FS
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MQRankSum
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MQ
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QD
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VQSLOD
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DP
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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East Asian
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African
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Latino
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European (Non-Finnish)
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South Asian
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QD
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FS
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DP
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MQ
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ReadPosRankSum
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African
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East Asian
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European (Non-Finnish)
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South Asian
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DP
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BaseQRankSum
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FS
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MQ
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variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1240
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3539
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1163
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33583
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 549
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3248
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3651
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2445
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10983
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.175889328063241e-5
allele num: 16192
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66244
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10244
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.868e0

MQ
type: SiteQuality
SIO_000300: 5.826e1

MQRankSum
type: SiteQuality
SIO_000300: 1.18e0

VQSLOD
type: SiteQuality
SIO_000300: 4.63e0

QD
type: SiteQuality
SIO_000300: 1.334e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.07e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.684719e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

GenotypeDepth
all individuals: 790
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 10754
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 34610
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 542
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 156
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 204
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 101
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5876
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1062
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1655
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 48
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 121
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 528
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2941
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 122
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 238
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 508
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 339
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 108
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3651
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10983
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3539
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 549
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3248
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2445
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1163
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1240
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33583
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.019141356198297e-5
allele num: 66244
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10244
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16192
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.826e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.868e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.07e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.18e0

DP
type: SiteQuality
SIO_000300: 1.684719e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.334e1

VQSLOD
type: SiteQuality
SIO_000300: 4.63e0

GenotypeDepth
all individuals: 42
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1069
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 508
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1656
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 123
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2952
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 204
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 342
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 121
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 34806
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 794
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 238
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 215
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 10878
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 108
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 528
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5940
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0