11-75152739-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75152739
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75152739
    reference: chr 11
allele count: 1
allele frequency: 1.208430007733952e-5
allele num: 82752
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.920T>C
  hgvsp: ENSP00000365459.3:p.Ile307Thr
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.445T>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1175T>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.863T>C
  hgvsp: ENSP00000434050.1:p.Ile288Thr
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1175T>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1277T>C
  hgvsp: ENSP00000337972.3:p.Ile426Thr
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.920T>C
  hgvsp: ENSP00000437049.1:p.Ile307Thr
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.542T>C
  hgvsp: ENSP00000435196.1:p.Ile181Thr
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435728
  ensembl transcript: ENST00000534322
  gene symbol: GDPD5
  hgvsc: ENST00000534322.1:c.29T>C
  hgvsp: ENSP00000435728.1:p.Ile10Thr
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1277T>C
  hgvsp: ENSP00000433214.1:p.Ile426Thr
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18223
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4600
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5116
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28973
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31240
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 990
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ile426Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: African
population: East Asian
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP

11-75152747-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75152747
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75152747
    reference: chr 11
allele count: 1
allele frequency: 1.103801492339618e-5
allele num: 90596
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1167A>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.912A>C
  hgvsp: ENSP00000365459.3:p.Arg304Ser
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1167A>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.855A>C
  hgvsp: ENSP00000434050.1:p.Arg285Ser
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.437A>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435728
  ensembl transcript: ENST00000534322
  gene symbol: GDPD5
  hgvsc: ENST00000534322.1:c.21A>C
  hgvsp: ENSP00000435728.1:p.Arg7Ser
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.534A>C
  hgvsp: ENSP00000435196.1:p.Arg178Ser
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1269A>C
  hgvsp: ENSP00000433214.1:p.Arg423Ser
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1269A>C
  hgvsp: ENSP00000337972.3:p.Arg423Ser
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.912A>C
  hgvsp: ENSP00000437049.1:p.Arg304Ser
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32352
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3998
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14533
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5967
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15134
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1500
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg423Ser
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ

11-75152750-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75152750
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75152750
    reference: chr 11
allele count: 1
allele frequency: 1.069999358000385e-5
allele num: 93458
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1164G>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.531G>C
  hgvsp: ENST00000533805.1:c.531G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.909G>C
  hgvsp: ENST00000533784.1:c.909G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1164G>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435728
  ensembl transcript: ENST00000534322
  gene symbol: GDPD5
  hgvsc: ENST00000534322.1:c.18G>C
  hgvsp: ENST00000534322.1:c.18G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1266G>C
  hgvsp: ENST00000336898.3:c.1266G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.434G>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.852G>C
  hgvsp: ENST00000526177.1:c.852G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.909G>C
  hgvsp: ENST00000376282.3:c.909G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1266G>C
  hgvsp: ENST00000529721.1:c.1266G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3711
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13094
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33762
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6338
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13742
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1205
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg422Arg
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum

11-75152751-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75152751
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75152751
    reference: chr 11
allele count: 2
allele frequency: 2.129199846697611e-5
allele num: 93932
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.908G>A
  hgvsp: ENSP00000437049.1:p.Arg303Gln
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.851G>A
  hgvsp: ENSP00000434050.1:p.Arg284Gln
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.530G>A
  hgvsp: ENSP00000435196.1:p.Arg177Gln
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1163G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435728
  ensembl transcript: ENST00000534322
  gene symbol: GDPD5
  hgvsc: ENST00000534322.1:c.17G>A
  hgvsp: ENSP00000435728.1:p.Arg6Gln
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1265G>A
  hgvsp: ENSP00000433214.1:p.Arg422Gln
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.908G>A
  hgvsp: ENSP00000365459.3:p.Arg303Gln
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1265G>A
  hgvsp: ENSP00000337972.3:p.Arg422Gln
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1163G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.433G>A
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33830
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6454
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3715
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12435
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg422Gln
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff

11-75152752-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75152752
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75152752
    reference: chr 11
allele count: 1
allele frequency: 1.048723703253141e-5
allele num: 95354
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.432C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.907C>T
  hgvsp: ENSP00000365459.3:p.Arg303Trp
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1162C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1264C>T
  hgvsp: ENSP00000337972.3:p.Arg422Trp
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.907C>T
  hgvsp: ENSP00000437049.1:p.Arg303Trp
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435728
  ensembl transcript: ENST00000534322
  gene symbol: GDPD5
  hgvsc: ENST00000534322.1:c.16C>T
  hgvsp: ENSP00000435728.1:p.Arg6Trp
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.850C>T
  hgvsp: ENSP00000434050.1:p.Arg284Trp
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.529C>T
  hgvsp: ENSP00000435196.1:p.Arg177Trp
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1162C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1264C>T
  hgvsp: ENSP00000433214.1:p.Arg422Trp
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34330
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3599
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6725
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11823
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1012
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg422Trp
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

11-75152753-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75152753
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75152753
    reference: chr 11
allele count: 1
allele frequency: 1.033698573495969e-5
allele num: 96740
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1263G>A
  hgvsp: ENST00000529721.1:c.1263G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1161G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.906G>A
  hgvsp: ENST00000376282.3:c.906G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435728
  ensembl transcript: ENST00000534322
  gene symbol: GDPD5
  hgvsc: ENST00000534322.1:c.15G>A
  hgvsp: ENST00000534322.1:c.15G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.849G>A
  hgvsp: ENST00000526177.1:c.849G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.906G>A
  hgvsp: ENST00000533784.1:c.906G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1263G>A
  hgvsp: ENST00000336898.3:c.1263G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.528G>A
  hgvsp: ENST00000533805.1:c.528G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.431G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1161G>A
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3461
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6927
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1692
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11347
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34889
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 38117
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu421Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

11-75152760-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75152760
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75152760
    reference: chr 11
allele count: 1
allele frequency: 9.748108866879825e-6
allele num: 102584
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1154C>G
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1154C>G
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.899C>G
  hgvsp: ENSP00000437049.1:p.Ala300Gly
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.424C>G
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.842C>G
  hgvsp: ENSP00000434050.1:p.Ala281Gly
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435728
  ensembl transcript: ENST00000534322
  gene symbol: GDPD5
  hgvsc: ENST00000534322.1:c.8C>G
  hgvsp: ENSP00000435728.1:p.Ala3Gly
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.521C>G
  hgvsp: ENSP00000435196.1:p.Ala174Gly
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1256C>G
  hgvsp: ENSP00000337972.3:p.Ala419Gly
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1256C>G
  hgvsp: ENSP00000433214.1:p.Ala419Gly
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.899C>G
  hgvsp: ENSP00000365459.3:p.Ala300Gly
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37878
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2759
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7719
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8754
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala419Gly
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

11-75152761-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75152761
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75152761
    reference: chr 11
allele count: 5
allele frequency: 4.869971754163826e-5
allele num: 102670
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.423G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.520G>A
  hgvsp: ENSP00000435196.1:p.Ala174Thr
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1255G>A
  hgvsp: ENSP00000337972.3:p.Ala419Thr
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.841G>A
  hgvsp: ENSP00000434050.1:p.Ala281Thr
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1153G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.898G>A
  hgvsp: ENSP00000437049.1:p.Ala300Thr
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435728
  ensembl transcript: ENST00000534322
  gene symbol: GDPD5
  hgvsc: ENST00000534322.1:c.7G>A
  hgvsp: ENSP00000435728.1:p.Ala3Thr
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1255G>A
  hgvsp: ENSP00000433214.1:p.Ala419Thr
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.898G>A
  hgvsp: ENSP00000365459.3:p.Ala300Thr
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1153G>A
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8419
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2755
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37802
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7948
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8996
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala419Thr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
reference allele: C
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

11-75152762-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75152762
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75152762
    reference: chr 11
allele count: 2
allele frequency: 1.916920658653938e-5
allele num: 104334
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1254C>T
  hgvsp: ENST00000336898.3:c.1254C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.897C>T
  hgvsp: ENST00000533784.1:c.897C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1152C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.519C>T
  hgvsp: ENST00000533805.1:c.519C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.897C>T
  hgvsp: ENST00000376282.3:c.897C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1152C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.840C>T
  hgvsp: ENST00000526177.1:c.840C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435728
  ensembl transcript: ENST00000534322
  gene symbol: GDPD5
  hgvsc: ENST00000534322.1:c.6C>T
  hgvsp: ENST00000534322.1:c.6C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1254C>T
  hgvsp: ENST00000529721.1:c.1254C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.422C>T
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7900
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2577
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8212
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val418Val
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

11-75152779-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75152779
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75152779
    reference: chr 11
allele count: 1
allele frequency: 9.000738060520962e-6
allele num: 111102
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.880G>C
  hgvsp: ENSP00000437049.1:p.Gly294Arg
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1135G>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.405G>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1135G>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.880G>C
  hgvsp: ENSP00000365459.3:p.Gly294Arg
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1237G>C
  hgvsp: ENSP00000433214.1:p.Gly413Arg
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.502G>C
  hgvsp: ENSP00000435196.1:p.Gly168Arg
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.823G>C
  hgvsp: ENSP00000434050.1:p.Gly275Arg
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1237G>C
  hgvsp: ENSP00000337972.3:p.Gly413Arg
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41896
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9612
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4797
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2738
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly413Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: African
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

11-75152789-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75152789
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75152789
    reference: chr 11
allele count: 1
allele frequency: 8.912814845184407e-6
allele num: 112198
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.870A>G
  hgvsp: ENST00000376282.3:c.870A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.492A>G
  hgvsp: ENST00000533805.1:c.492A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.870A>G
  hgvsp: ENST00000533784.1:c.870A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1125A>G
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1227A>G
  hgvsp: ENST00000529721.1:c.1227A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.813A>G
  hgvsp: ENST00000526177.1:c.813A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1227A>G
  hgvsp: ENST00000336898.3:c.1227A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.395A>G
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1125A>G
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4285
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10142
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41774
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gln409Gln
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum

11-75152795-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75152795
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75152795
    reference: chr 11
allele count: 20
allele frequency: 1.779042874933286e-4
allele num: 112420
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.864C>T
  hgvsp: ENST00000376282.3:c.864C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.807C>T
  hgvsp: ENST00000526177.1:c.807C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1221C>T
  hgvsp: ENST00000529721.1:c.1221C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1119C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1119C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.389C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.864C>T
  hgvsp: ENST00000533784.1:c.864C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.486C>T
  hgvsp: ENST00000533805.1:c.486C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1221C>T
  hgvsp: ENST00000336898.3:c.1221C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41435
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4163
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10338
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly407Gly
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum

11-75152796-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75152796
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75152796
    reference: chr 11
allele count: 9
allele frequency: 8.010823512657102e-5
allele num: 112348
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1220G>A
  hgvsp: ENSP00000433214.1:p.Gly407Asp
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.388G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1220G>A
  hgvsp: ENSP00000337972.3:p.Gly407Asp
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.863G>A
  hgvsp: ENSP00000437049.1:p.Gly288Asp
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.806G>A
  hgvsp: ENSP00000434050.1:p.Gly269Asp
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.863G>A
  hgvsp: ENSP00000365459.3:p.Gly288Asp
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.485G>A
  hgvsp: ENSP00000435196.1:p.Gly162Asp
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1118G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1118G>A
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41256
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10375
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2768
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly407Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum

11-75152797-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75152797
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75152797
    reference: chr 11
allele count: 11
allele frequency: 9.784735812133073e-5
allele num: 112420
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1117G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1219G>A
  hgvsp: ENSP00000337972.3:p.Gly407Ser
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1117G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.805G>A
  hgvsp: ENSP00000434050.1:p.Gly269Ser
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1219G>A
  hgvsp: ENSP00000433214.1:p.Gly407Ser
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.862G>A
  hgvsp: ENSP00000365459.3:p.Gly288Ser
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.862G>A
  hgvsp: ENSP00000437049.1:p.Gly288Ser
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.484G>A
  hgvsp: ENSP00000435196.1:p.Gly162Ser
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.387G>A
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10431
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4133
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41255
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly407Ser
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

11-75152798-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75152798
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75152798
    reference: chr 11
allele count: 9
allele frequency: 7.998862384016496e-5
allele num: 112516
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.386C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.804C>T
  hgvsp: ENST00000526177.1:c.804C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1218C>T
  hgvsp: ENST00000336898.3:c.1218C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1218C>T
  hgvsp: ENST00000529721.1:c.1218C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.861C>T
  hgvsp: ENST00000376282.3:c.861C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.861C>T
  hgvsp: ENST00000533784.1:c.861C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.483C>T
  hgvsp: ENST00000533805.1:c.483C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1116C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1116C>T
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4070
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10544
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41239
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 5132
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro406Pro
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/11-75152805-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75152805
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75152805
    reference: chr 11
allele count: 1
allele frequency: 8.957202486519411e-6
allele num: 111642
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.379T>G
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1109T>G
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.476T>G
  hgvsp: ENSP00000435196.1:p.Val159Gly
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.797T>G
  hgvsp: ENSP00000434050.1:p.Val266Gly
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.854T>G
  hgvsp: ENSP00000365459.3:p.Val285Gly
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1109T>G
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.854T>G
  hgvsp: ENSP00000437049.1:p.Val285Gly
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1211T>G
  hgvsp: ENSP00000337972.3:p.Val404Gly
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1211T>G
  hgvsp: ENSP00000433214.1:p.Val404Gly
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4312
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2480
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10588
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39923
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val404Gly
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

11-75152811-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75152811
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75152811
    reference: chr 11
allele count: 5
allele frequency: 4.479564227991901e-5
allele num: 111618
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.848G>A
  hgvsp: ENSP00000437049.1:p.Arg283Gln
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1103G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.791G>A
  hgvsp: ENSP00000434050.1:p.Arg264Gln
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.373G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1103G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1205G>A
  hgvsp: ENSP00000433214.1:p.Arg402Gln
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1205G>A
  hgvsp: ENSP00000337972.3:p.Arg402Gln
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.848G>A
  hgvsp: ENSP00000365459.3:p.Arg283Gln
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.470G>A
  hgvsp: ENSP00000435196.1:p.Arg157Gln
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2713
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10691
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39546
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4448
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 9.75e1
  variant carriers: 5
hgvs: p.Arg402Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum

11-75152812-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75152812
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75152812
    reference: chr 11
allele count: 3
allele frequency: 2.694546238413451e-5
allele num: 111336
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1102C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1204C>T
  hgvsp: ENSP00000433214.1:p.Arg402Trp
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.790C>T
  hgvsp: ENSP00000434050.1:p.Arg264Trp
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.372C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.847C>T
  hgvsp: ENSP00000437049.1:p.Arg283Trp
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.469C>T
  hgvsp: ENSP00000435196.1:p.Arg157Trp
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.847C>T
  hgvsp: ENSP00000365459.3:p.Arg283Trp
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1204C>T
  hgvsp: ENSP00000337972.3:p.Arg402Trp
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1102C>T
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4546
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39160
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2891
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10740
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg402Trp
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP

11-75152816-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75152816
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75152816
    reference: chr 11
allele count: 1
allele frequency: 9.01144453455889e-6
allele num: 110970
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1098G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1200G>A
  hgvsp: ENST00000529721.1:c.1200G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.368G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.465G>A
  hgvsp: ENST00000533805.1:c.465G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.843G>A
  hgvsp: ENST00000533784.1:c.843G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1200G>A
  hgvsp: ENST00000336898.3:c.1200G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1098G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.843G>A
  hgvsp: ENST00000376282.3:c.843G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.786G>A
  hgvsp: ENST00000526177.1:c.786G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38602
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4745
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10846
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3161
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu400Leu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD

11-75152819-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75152819
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75152819
    reference: chr 11
allele count: 1
allele frequency: 9.067662900564009e-6
allele num: 110282
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.462C>A
  hgvsp: ENST00000533805.1:c.462C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1197C>A
  hgvsp: ENST00000529721.1:c.1197C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.840C>A
  hgvsp: ENST00000533784.1:c.840C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.840C>A
  hgvsp: ENST00000376282.3:c.840C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.783C>A
  hgvsp: ENST00000526177.1:c.783C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1095C>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1197C>A
  hgvsp: ENST00000336898.3:c.1197C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.365C>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1095C>A
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10839
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3567
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37786
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5060
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro399Pro
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

11-75152825-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75152825
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75152825
    reference: chr 11
allele count: 1
allele frequency: 9.215230933687198e-6
allele num: 108516
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.456G>A
  hgvsp: ENST00000533805.1:c.456G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.834G>A
  hgvsp: ENST00000376282.3:c.834G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1191G>A
  hgvsp: ENST00000336898.3:c.1191G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.777G>A
  hgvsp: ENST00000526177.1:c.777G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.834G>A
  hgvsp: ENST00000533784.1:c.834G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1191G>A
  hgvsp: ENST00000529721.1:c.1191G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.359G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1089G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1089G>A
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10604
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5891
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35934
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4613
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gln397Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

11-75152831-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75152831
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75152831
    reference: chr 11
allele count: 1
allele frequency: 9.459485025635204e-6
allele num: 105714
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.353C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.828C>T
  hgvsp: ENST00000533784.1:c.828C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.828C>T
  hgvsp: ENST00000376282.3:c.828C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1185C>T
  hgvsp: ENST00000336898.3:c.1185C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1185C>T
  hgvsp: ENST00000529721.1:c.1185C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1083C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.771C>T
  hgvsp: ENST00000526177.1:c.771C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.450C>T
  hgvsp: ENST00000533805.1:c.450C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1083C>T
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33286
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7121
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6291
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9970
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1277
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser395Ser
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP

11-75152832-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75152832
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75152832
    reference: chr 11
allele count: 1
allele frequency: 9.497758528987159e-6
allele num: 105288
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.352G>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.449G>C
  hgvsp: ENSP00000435196.1:p.Ser150Thr
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.827G>C
  hgvsp: ENSP00000365459.3:p.Ser276Thr
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1082G>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1184G>C
  hgvsp: ENSP00000337972.3:p.Ser395Thr
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1082G>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1184G>C
  hgvsp: ENSP00000433214.1:p.Ser395Thr
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.827G>C
  hgvsp: ENSP00000437049.1:p.Ser276Thr
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.770G>C
  hgvsp: ENSP00000434050.1:p.Ser257Thr
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32742
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9905
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6591
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7335
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 674
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1336
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser395Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
reference allele: C
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

11-75152833-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75152833
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75152832
    reference: chr 11
allele count: 1
allele frequency: 9.535433671523381e-6
allele num: 104872
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.768delT
  hgvsp: ENSP00000434050.1:p.Ser257AlafsTer35
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1080delT
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1080delT
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.825delT
  hgvsp: ENSP00000437049.1:p.Ser276AlafsTer35
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.825delT
  hgvsp: ENSP00000365459.3:p.Ser276AlafsTer35
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1182delT
  hgvsp: ENSP00000337972.3:p.Ser395AlafsTer35
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1182delT
  hgvsp: ENSP00000433214.1:p.Ser395AlafsTer35
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.447delT
  hgvsp: ENSP00000435196.1:p.Ser150AlafsTer35
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.350delT
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32364
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6904
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7537
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9792
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38970
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser395AlafsTer35
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: TA
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS

11-75152850-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75152850
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75152850
    reference: chr 11
allele count: 1
allele frequency: 1.033442189243934e-5
allele num: 96764
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1168-2A>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1066-2A>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.811-2A>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.433-2A>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.336-2A>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1066-2A>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.811-2A>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.754-2A>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1168-2A>C
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7374
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11124
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23111
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28081
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1169
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 9.75e1
  variant carriers: 1
hgvs: c.1168-2A>C
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/11-75152852-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75152852
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75152852
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 95458
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.811-4G>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.754-4G>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.336-4G>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.811-4G>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1168-4G>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1066-4G>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1168-4G>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1066-4G>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.433-4G>T
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7045
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15148
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11589
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2657
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21701
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26483
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1235
  bin: 3.75e1
  variant carriers: 0
hgvs: c.1168-4G>T
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum

11-75152853-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75152853
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75152853
    reference: chr 11
allele count: 1
allele frequency: 1.058268249835968e-5
allele num: 94494
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1066-5T>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.336-5T>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1168-5T>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.433-5T>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.811-5T>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.754-5T>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1066-5T>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1168-5T>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.811-5T>C
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6736
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11997
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16228
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20314
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2821
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1298
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 5.25e1
  variant carriers: 0
hgvs: c.1168-5T>C
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

11-75152863-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75152863
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75152863
    reference: chr 11
allele count: 4
allele frequency: 4.488128899061981e-5
allele num: 89124
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1168-15C>G
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1168-15C>G
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.754-15C>G
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.433-15C>G
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.336-15C>G
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.811-15C>G
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1066-15C>G
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1066-15C>G
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.811-15C>G
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2013
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4483
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4040
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13831
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22168
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12943
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 702
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1954
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2199
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

11-75152864-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75152864
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75152864
    reference: chr 11
allele count: 2
allele frequency: 2.287544321171223e-5
allele num: 87430
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.811-16T>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.433-16T>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.754-16T>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.336-16T>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1168-16T>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1168-16T>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1066-16T>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1066-16T>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.811-16T>C
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14225
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10783
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2357
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3861
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23544
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4706
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 881
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5259
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2313
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: A
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

11-75152876-ACTTCT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75152876
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75152871
    reference: chr 11
allele count: 2
allele frequency: 2.426889940541197e-5
allele num: 82410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.336-33_336-29delAGAAG
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1168-33_1168-29delAGAAG
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1066-33_*1066-29delAGAAG
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1066-33_*1066-29delAGAAG
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.433-33_433-29delAGAAG
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.754-33_754-29delAGAAG
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.811-33_811-29delAGAAG
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.811-33_811-29delAGAAG
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1168-33_1168-29delAGAAG
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3476
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7119
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25588
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5299
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15591
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2553
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6180
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1159
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1143
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: ACTTCT
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: VQSLOD

11-75152890-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75152890
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75152890
    reference: chr 11
allele count: 5
allele frequency: 7.128599942971201e-5
allele num: 70140
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1168-42G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.811-42G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.433-42G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.754-42G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1168-42G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.336-42G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1066-42G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1066-42G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.811-42G>A
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19489
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8541
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2599
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22755
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6435
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7173
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1208
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4083
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3686
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

11-75152890-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75152890
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75152890
    reference: chr 11
allele count: 1
allele frequency: 1.42571998859424e-5
allele num: 70140
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.336-42G>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.433-42G>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.811-42G>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.754-42G>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1066-42G>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.811-42G>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1066-42G>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1168-42G>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1168-42G>C
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2599
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19489
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22755
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8541
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3686
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 711
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum

11-75152891-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75152891
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75152891
    reference: chr 11
allele count: 1
allele frequency: 1.459598318542737e-5
allele num: 68512
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1066-43C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1066-43C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1168-43C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.811-43C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.811-43C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.754-43C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.433-43C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.336-43C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1168-43C>T
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5147
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22033
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2718
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8333
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20374
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5892
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4123
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1208
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

11-75152895-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75152895
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75152895
    reference: chr 11
allele count: 2
allele frequency: 3.101159833777833e-5
allele num: 64492
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.433-47G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1168-47G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.811-47G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1066-47G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.811-47G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1066-47G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.754-47G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1168-47G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.336-47G>A
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20642
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21919
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8089
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5224
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7111
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18125
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4565
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1244
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6544
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1022
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

11-75152896-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75152896
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75152896
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 64312
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.811-48C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1168-48C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.811-48C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.433-48C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1168-48C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.336-48C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1066-48C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.754-48C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1066-48C>T
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 20656
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8006
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21993
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5237
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2885
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18330
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4589
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1596
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4091
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD

11-75153357-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75153357
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75153357
    reference: chr 11
allele count: 3
allele frequency: 2.880737468792011e-4
allele num: 10414
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1167+51G>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1065+51G>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1167+51G>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.335+51G>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.810+51G>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.810+51G>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.753+51G>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.432+51G>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1065+51G>C
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2580
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37554
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8034
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3396
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24610
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10596
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 994
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
reference allele: C
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

11-75153357-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75153357
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75153357
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 10414
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.753+51G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1167+51G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1065+51G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1065+51G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.432+51G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.810+51G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.810+51G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.335+51G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1167+51G>A
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8034
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 37554
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2580
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 926
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3396
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/11-75153364-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75153364
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75153364
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 10380
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1167+44G>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.810+44G>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.753+44G>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.432+44G>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.810+44G>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1167+44G>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.335+44G>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1065+44G>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1065+44G>T
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37626
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8130
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3755
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2444
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ

http://identifiers.org/exac.variant/11-75153374-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75153374
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75153374
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 10696
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.810+34G>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.335+34G>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.753+34G>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1167+34G>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1065+34G>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1167+34G>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.432+34G>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1065+34G>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.810+34G>T
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2613
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37619
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8839
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5472
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 963
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3293
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1281
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

11-75153376-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75153376
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75153376
    reference: chr 11
allele count: 1
allele frequency: 9.201324990798675e-5
allele num: 10868
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.753+32G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1167+32G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1167+32G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1065+32G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.810+32G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.432+32G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1065+32G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.335+32G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.810+32G>A
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2617
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37666
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1619
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

11-75153378-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75153378
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75153378
    reference: chr 11
allele count: 2
allele frequency: 1.839249586168843e-4
allele num: 10874
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.810+30G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1167+30G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.753+30G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.432+30G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.810+30G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.335+30G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1065+30G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1167+30G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1065+30G>A
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9499
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2589
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37594
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 943
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

11-75153379-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75153379
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75153379
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 11120
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1065+29C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1167+29C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.432+29C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.335+29C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.810+29C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1167+29C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1065+29C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.810+29C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.753+29C>T
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2594
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37529
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9904
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 928
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32419
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7484
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD

11-75153383-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75153383
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75153383
    reference: chr 11
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1065+25C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1167+25C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1065+25C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1167+25C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.753+25C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.810+25C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.432+25C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.810+25C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.335+25C>T
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2524
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10722
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37115
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 919
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 928
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

11-75153395-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75153395
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75153395
    reference: chr 11
allele count: 1
allele frequency: 7.623113279463333e-5
allele num: 13118
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.432+13A>G
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.753+13A>G
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1167+13A>G
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1065+13A>G
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1167+13A>G
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.335+13A>G
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.810+13A>G
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1065+13A>G
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.810+13A>G
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2247
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34873
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14733
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2390
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32310
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

11-75153401-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75153401
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75153401
    reference: chr 11
allele count: 1
allele frequency: 6.993985172751433e-5
allele num: 14298
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1167+7C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.810+7C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.753+7C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.810+7C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1065+7C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1167+7C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.432+7C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1065+7C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.335+7C>T
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16963
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2945
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2119
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32927
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 845
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1772
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 4.25e1
  variant carriers: 0
hgvs: c.1167+7C>T
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

11-75153402-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75153402
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75153402
    reference: chr 11
allele count: 1
allele frequency: 6.941552131056504e-5
allele num: 14406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1065+6G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1065+6G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.335+6G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1167+6G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.810+6G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.753+6G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.432+6G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.810+6G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1167+6G>A
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17315
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3029
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2132
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32525
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 835
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14536
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
hgvs: c.1167+6G>A
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

11-75153412-TGCTGGG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75153412
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75153406
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 16746
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.325_330delCCCAGC
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.800_805delCCCAGC
  hgvsp: ENSP00000365459.3:p.Pro267_Gln268del
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.743_748delCCCAGC
  hgvsp: ENSP00000434050.1:p.Pro248_Gln249del
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1157_1162delCCCAGC
  hgvsp: ENSP00000337972.3:p.Pro386_Gln387del
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1157_1162delCCCAGC
  hgvsp: ENSP00000433214.1:p.Pro386_Gln387del
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.422_427delCCCAGC
  hgvsp: ENSP00000435196.1:p.Pro141_Gln142del
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.800_805delCCCAGC
  hgvsp: ENSP00000437049.1:p.Pro267_Gln268del
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: inframe deletion
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3947
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21427
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28393
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26877
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4308
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
hgvs: p.Pro386_Gln387del
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
population: Latino
reference allele: TGCTGGG
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ

11-75153416-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75153416
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75153416
    reference: chr 11
allele count: 2
allele frequency: 1.11470293166871e-4
allele num: 17942
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.745C>T
  hgvsp: ENSP00000434050.1:p.Gln249Ter
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.802C>T
  hgvsp: ENSP00000437049.1:p.Gln268Ter
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1159C>T
  hgvsp: ENSP00000433214.1:p.Gln387Ter
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.424C>T
  hgvsp: ENSP00000435196.1:p.Gln142Ter
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1159C>T
  hgvsp: ENSP00000337972.3:p.Gln387Ter
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.802C>T
  hgvsp: ENSP00000365459.3:p.Gln268Ter
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1057C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1057C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.327C>T
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23330
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26317
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4343
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19244
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gln387Ter
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

11-75153425-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75153425
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75153425
    reference: chr 11
allele count: 1
allele frequency: 4.7523999619808e-5
allele num: 21042
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.793G>A
  hgvsp: ENSP00000437049.1:p.Gly265Ser
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.736G>A
  hgvsp: ENSP00000434050.1:p.Gly246Ser
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.415G>A
  hgvsp: ENSP00000435196.1:p.Gly139Ser
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1048G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1150G>A
  hgvsp: ENSP00000433214.1:p.Gly384Ser
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1150G>A
  hgvsp: ENSP00000337972.3:p.Gly384Ser
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1048G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.318G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.793G>A
  hgvsp: ENSP00000365459.3:p.Gly265Ser
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27733
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21024
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2457
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5179
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 973
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2304
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly384Ser
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: East Asian
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

11-75153426-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75153426
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75153426
    reference: chr 11
allele count: 4
allele frequency: 1.808808899339785e-4
allele num: 22114
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.317C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1047C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.414C>T
  hgvsp: ENST00000533805.1:c.414C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1149C>T
  hgvsp: ENST00000529721.1:c.1149C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.735C>T
  hgvsp: ENST00000526177.1:c.735C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.792C>T
  hgvsp: ENST00000376282.3:c.792C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.792C>T
  hgvsp: ENST00000533784.1:c.792C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1149C>T
  hgvsp: ENST00000336898.3:c.1149C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1047C>T
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28994
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19434
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5528
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26472
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser383Ser
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

11-75153429-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75153429
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75153429
    reference: chr 11
allele count: 1
allele frequency: 4.284857314251435e-5
allele num: 23338
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.732C>G
  hgvsp: ENSP00000434050.1:p.His244Gln
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.314C>G
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1044C>G
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.411C>G
  hgvsp: ENSP00000435196.1:p.His137Gln
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.789C>G
  hgvsp: ENSP00000437049.1:p.His263Gln
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.789C>G
  hgvsp: ENSP00000365459.3:p.His263Gln
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1146C>G
  hgvsp: ENSP00000433214.1:p.His382Gln
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1146C>G
  hgvsp: ENSP00000337972.3:p.His382Gln
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1044C>G
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30424
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5848
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17665
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2132
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17099
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
hgvs: p.His382Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

11-75153431-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75153431
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75153431
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 24438
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1042C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1144C>T
  hgvsp: ENSP00000337972.3:p.His382Tyr
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1144C>T
  hgvsp: ENSP00000433214.1:p.His382Tyr
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.787C>T
  hgvsp: ENSP00000365459.3:p.His263Tyr
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.787C>T
  hgvsp: ENSP00000437049.1:p.His263Tyr
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1042C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.730C>T
  hgvsp: ENSP00000434050.1:p.His244Tyr
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.409C>T
  hgvsp: ENSP00000435196.1:p.His137Tyr
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.312C>T
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 30959
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2197
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2984
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6008
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16575
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2133
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28084
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7022
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 4.75e1
  variant carriers: 0
hgvs: p.His382Tyr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff

11-75153435-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75153435
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75153435
    reference: chr 11
allele count: 1
allele frequency: 3.807493146512336e-5
allele num: 26264
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.405G>A
  hgvsp: ENST00000533805.1:c.405G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1038G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.783G>A
  hgvsp: ENST00000376282.3:c.783G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1038G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.783G>A
  hgvsp: ENST00000533784.1:c.783G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1140G>A
  hgvsp: ENST00000336898.3:c.1140G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.726G>A
  hgvsp: ENST00000526177.1:c.726G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.308G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1140G>A
  hgvsp: ENST00000529721.1:c.1140G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32464
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3324
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6343
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14209
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1064
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val380Val
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

11-75153437-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75153437
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75153437
    reference: chr 11
allele count: 2
allele frequency: 7.35456350665588e-5
allele num: 27194
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1138G>A
  hgvsp: ENSP00000433214.1:p.Val380Met
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.403G>A
  hgvsp: ENSP00000435196.1:p.Val135Met
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.724G>A
  hgvsp: ENSP00000434050.1:p.Val242Met
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.306G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1138G>A
  hgvsp: ENSP00000337972.3:p.Val380Met
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1036G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.781G>A
  hgvsp: ENSP00000437049.1:p.Val261Met
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1036G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.781G>A
  hgvsp: ENSP00000365459.3:p.Val261Met
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33195
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6589
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13025
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3474
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2484
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30584
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1215
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1436
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Val380Met
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ

11-75153438-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75153438
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75153438
    reference: chr 11
allele count: 4
allele frequency: 1.419647927314026e-4
allele num: 28176
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.780C>T
  hgvsp: ENST00000376282.3:c.780C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.305C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.723C>T
  hgvsp: ENST00000526177.1:c.723C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1035C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.780C>T
  hgvsp: ENST00000533784.1:c.780C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1137C>T
  hgvsp: ENST00000336898.3:c.1137C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1137C>T
  hgvsp: ENST00000529721.1:c.1137C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.402C>T
  hgvsp: ENST00000533805.1:c.402C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1035C>T
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12072
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3569
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33759
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6855
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8173
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11746
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala379Ala
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/11-75153440-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75153440
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75153440
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 29582
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.778G>T
  hgvsp: ENSP00000437049.1:p.Ala260Ser
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.303G>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1033G>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.400G>T
  hgvsp: ENSP00000435196.1:p.Ala134Ser
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1135G>T
  hgvsp: ENSP00000433214.1:p.Ala379Ser
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1033G>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.721G>T
  hgvsp: ENSP00000434050.1:p.Ala241Ser
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.778G>T
  hgvsp: ENSP00000365459.3:p.Ala260Ser
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1135G>T
  hgvsp: ENSP00000337972.3:p.Ala379Ser
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10829
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7199
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34402
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3777
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8522
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala379Ser
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS

http://identifiers.org/exac.variant/11-75153443-CCA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75153443
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75153441
    reference: chr 11
allele count: 1
allele frequency: 3.154375118289067e-5
allele num: 31702
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1130_1131delTG
  hgvsp: ENSP00000433214.1:p.Leu377ArgfsTer18
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1130_1131delTG
  hgvsp: ENSP00000337972.3:p.Leu377ArgfsTer18
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.298_299delTG
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.773_774delTG
  hgvsp: ENSP00000437049.1:p.Leu258ArgfsTer18
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1028_*1029delTG
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.395_396delTG
  hgvsp: ENSP00000435196.1:p.Leu132ArgfsTer18
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.716_717delTG
  hgvsp: ENSP00000434050.1:p.Leu239ArgfsTer18
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.773_774delTG
  hgvsp: ENSP00000365459.3:p.Leu258ArgfsTer18
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1028_*1029delTG
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9169
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2691
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7909
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3907
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33478
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1581
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu377ArgfsTer18
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: CCA
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD

11-75153445-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75153445
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75153445
    reference: chr 11
allele count: 1
allele frequency: 3.035085589413621e-5
allele num: 32948
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.773T>C
  hgvsp: ENSP00000437049.1:p.Leu258Pro
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1130T>C
  hgvsp: ENSP00000337972.3:p.Leu377Pro
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.716T>C
  hgvsp: ENSP00000434050.1:p.Leu239Pro
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.298T>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.773T>C
  hgvsp: ENSP00000365459.3:p.Leu258Pro
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1028T>C
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.395T>C
  hgvsp: ENSP00000435196.1:p.Leu132Pro
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1130T>C
  hgvsp: ENSP00000433214.1:p.Leu377Pro
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1028T>C
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4098
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8200
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35453
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2756
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8315
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9665
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 735
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Leu377Pro
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: ReadPosRankSum

11-75153452-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75153452
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75153452
    reference: chr 11
allele count: 1
allele frequency: 2.618897967735177e-5
allele num: 38184
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.709G>A
  hgvsp: ENSP00000434050.1:p.Val237Met
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.766G>A
  hgvsp: ENSP00000437049.1:p.Val256Met
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1021G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1123G>A
  hgvsp: ENSP00000337972.3:p.Val375Met
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1123G>A
  hgvsp: ENSP00000433214.1:p.Val375Met
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1021G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.388G>A
  hgvsp: ENSP00000435196.1:p.Val130Met
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.291G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.766G>A
  hgvsp: ENSP00000365459.3:p.Val256Met
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5615
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35383
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9952
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4726
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2974
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1759
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11246
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val375Met
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ

11-75153453-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75153453
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75153453
    reference: chr 11
allele count: 74
allele frequency: 1.872848754808666e-3
allele num: 39512
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.765C>T
  hgvsp: ENST00000376282.3:c.765C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1020C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.387C>T
  hgvsp: ENST00000533805.1:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.765C>T
  hgvsp: ENST00000533784.1:c.765C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1122C>T
  hgvsp: ENST00000529721.1:c.1122C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1122C>T
  hgvsp: ENST00000336898.3:c.1122C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.708C>T
  hgvsp: ENST00000526177.1:c.708C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.290C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1020C>T
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 35169
  bin: 7.5e0
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5191
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4771
  bin: 1.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 1.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10391
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1092
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1772
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 7.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 4.25e1
  variant carriers: 4
hgvs: p.Asn374Asn
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP

11-75153454-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75153454
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75153454
    reference: chr 11
allele count: 6
allele frequency: 1.480384900074019e-4
allele num: 40530
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1121A>G
  hgvsp: ENSP00000433214.1:p.Asn374Ser
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1121A>G
  hgvsp: ENSP00000337972.3:p.Asn374Ser
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.386A>G
  hgvsp: ENSP00000435196.1:p.Asn129Ser
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.289A>G
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.707A>G
  hgvsp: ENSP00000434050.1:p.Asn236Ser
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1019A>G
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1019A>G
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.764A>G
  hgvsp: ENSP00000437049.1:p.Asn255Ser
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.764A>G
  hgvsp: ENSP00000365459.3:p.Asn255Ser
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35076
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4815
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10701
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4915
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4896
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1184
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asn374Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

11-75153469-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75153469
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75153469
    reference: chr 11
allele count: 8
allele frequency: 1.454545454545455e-4
allele num: 55000
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.274G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.749G>A
  hgvsp: ENSP00000365459.3:p.Arg250His
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.749G>A
  hgvsp: ENSP00000437049.1:p.Arg250His
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1106G>A
  hgvsp: ENSP00000337972.3:p.Arg369His
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1004G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1004G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.692G>A
  hgvsp: ENSP00000434050.1:p.Arg231His
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.371G>A
  hgvsp: ENSP00000435196.1:p.Arg124His
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1106G>A
  hgvsp: ENSP00000433214.1:p.Arg369His
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16673
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5050
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2118
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3695
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 30402
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1409
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1847
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 30192
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg369His
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

11-75153470-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75153470
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75153470
    reference: chr 11
allele count: 26
allele frequency: 4.443229202269465e-4
allele num: 58516
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.273C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1105C>T
  hgvsp: ENSP00000337972.3:p.Arg369Cys
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.748C>T
  hgvsp: ENSP00000437049.1:p.Arg250Cys
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.370C>T
  hgvsp: ENSP00000435196.1:p.Arg124Cys
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*1003C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.748C>T
  hgvsp: ENSP00000365459.3:p.Arg250Cys
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.691C>T
  hgvsp: ENSP00000434050.1:p.Arg231Cys
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1105C>T
  hgvsp: ENSP00000433214.1:p.Arg369Cys
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*1003C>T
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28955
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18215
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4927
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3894
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28998
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1811
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg369Cys
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ

11-75153484-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75153484
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75153484
    reference: chr 11
allele count: 3
allele frequency: 3.885708364634873e-5
allele num: 77206
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*989G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.677G>A
  hgvsp: ENSP00000434050.1:p.Arg226Gln
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1091G>A
  hgvsp: ENSP00000337972.3:p.Arg364Gln
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1091G>A
  hgvsp: ENSP00000433214.1:p.Arg364Gln
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*989G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.259G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.356G>A
  hgvsp: ENSP00000435196.1:p.Arg119Gln
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.734G>A
  hgvsp: ENSP00000437049.1:p.Arg245Gln
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.734G>A
  hgvsp: ENSP00000365459.3:p.Arg245Gln
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24516
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6022
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2467
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20584
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4709
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2041
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg364Gln
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

11-75153487-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75153487
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75153487
    reference: chr 11
allele count: 1
allele frequency: 1.21056581846355e-5
allele num: 82606
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1088C>T
  hgvsp: ENSP00000337972.3:p.Pro363Leu
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.353C>T
  hgvsp: ENSP00000435196.1:p.Pro118Leu
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*986C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.731C>T
  hgvsp: ENSP00000365459.3:p.Pro244Leu
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1088C>T
  hgvsp: ENSP00000433214.1:p.Pro363Leu
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.731C>T
  hgvsp: ENSP00000437049.1:p.Pro244Leu
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*986C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.674C>T
  hgvsp: ENSP00000434050.1:p.Pro225Leu
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.256C>T
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18392
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2420
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4456
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26231
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6874
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2336
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27711
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro363Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/11-75153489-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75153489
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75153489
    reference: chr 11
allele count: 3
allele frequency: 3.540574989378275e-5
allele num: 84732
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.729G>T
  hgvsp: ENST00000533784.1:c.729G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1086G>T
  hgvsp: ENST00000529721.1:c.1086G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1086G>T
  hgvsp: ENST00000336898.3:c.1086G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.254G>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.672G>T
  hgvsp: ENST00000526177.1:c.672G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.351G>T
  hgvsp: ENST00000533805.1:c.351G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*984G>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*984G>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.729G>T
  hgvsp: ENST00000376282.3:c.729G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26902
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4353
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7438
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2513
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2379
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 759
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17706
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro362Pro
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

11-75153489-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75153489
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75153489
    reference: chr 11
allele count: 2
allele frequency: 2.360383326252183e-5
allele num: 84732
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.672G>A
  hgvsp: ENST00000526177.1:c.672G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1086G>A
  hgvsp: ENST00000529721.1:c.1086G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.729G>A
  hgvsp: ENST00000376282.3:c.729G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.729G>A
  hgvsp: ENST00000533784.1:c.729G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*984G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.351G>A
  hgvsp: ENST00000533805.1:c.351G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.254G>A
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1086G>A
  hgvsp: ENST00000336898.3:c.1086G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*984G>A
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7438
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2513
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4353
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26902
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1715
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro362Pro
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

11-75153490-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75153490
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 75153490
    reference: chr 11
allele count: 7
allele frequency: 8.09548040893741e-5
allele num: 86468
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000435196
  ensembl transcript: ENST00000533805
  gene symbol: GDPD5
  hgvsc: ENST00000533805.1:c.350C>T
  hgvsp: ENSP00000435196.1:p.Pro117Leu
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000433214
  ensembl transcript: ENST00000529721
  gene symbol: GDPD5
  hgvsc: ENST00000529721.1:c.1085C>T
  hgvsp: ENSP00000433214.1:p.Pro362Leu
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000365459
  ensembl transcript: ENST00000376282
  gene symbol: GDPD5
  hgvsc: ENST00000376282.3:c.728C>T
  hgvsp: ENSP00000365459.3:p.Pro243Leu
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000337972
  ensembl transcript: ENST00000336898
  gene symbol: GDPD5
  hgvsc: ENST00000336898.3:c.1085C>T
  hgvsp: ENSP00000337972.3:p.Pro362Leu
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437123
  ensembl transcript: ENST00000527820
  gene symbol: GDPD5
  hgvsc: ENST00000527820.1:c.*983C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000437049
  ensembl transcript: ENST00000533784
  gene symbol: GDPD5
  hgvsc: ENST00000533784.1:c.728C>T
  hgvsp: ENSP00000437049.1:p.Pro243Leu
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000396535
  ensembl transcript: ENST00000443276
  gene symbol: GDPD5
  hgvsc: ENST00000443276.2:c.*983C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158555
  ensembl transcript: ENST00000531561
  gene symbol: GDPD5
  hgvsc: ENST00000531561.1:n.253C>T
  variant of: http://identifiers.org/hgnc/28804
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158555
  ensembl protein: ENSP00000434050
  ensembl transcript: ENST00000526177
  gene symbol: GDPD5
  hgvsc: ENST00000526177.1:c.671C>T
  hgvsp: ENSP00000434050.1:p.Pro224Leu
  variant of: http://identifiers.org/hgnc/28804
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4261
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2545
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16425
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27368
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7712
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1429
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29229
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1621
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro362Leu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum

17-9923096-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9923096
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 9923096
    reference: chr 17
allele count: 3
allele frequency: 2.488139866635703e-5
allele num: 120572
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007237
  ensembl protein: ENSP00000462897
  ensembl transcript: ENST00000584389
  gene symbol: GAS7
  hgvsc: ENST00000584389.1:c.110A>G
  hgvsp: ENSP00000462897.1:p.Asn37Ser
  variant of: http://identifiers.org/hgnc/4169
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007237
  ensembl protein: ENSP00000322608
  ensembl transcript: ENST00000323816
  gene symbol: GAS7
  hgvsc: ENST00000323816.4:c.122A>G
  hgvsp: ENSP00000322608.5:p.Asn41Ser
  variant of: http://identifiers.org/hgnc/4169
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007237
  ensembl protein: ENSP00000379421
  ensembl transcript: ENST00000396115
  gene symbol: GAS7
  hgvsc: ENST00000396115.2:c.110A>G
  hgvsp: ENSP00000379421.2:p.Asn37Ser
  variant of: http://identifiers.org/hgnc/4169
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007237
  ensembl protein: ENSP00000464494
  ensembl transcript: ENST00000578599
  gene symbol: GAS7
  hgvsc: ENST00000578599.1:c.110A>G
  hgvsp: ENSP00000464494.1:p.Asn37Ser
  variant of: http://identifiers.org/hgnc/4169
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007237
  ensembl protein: ENSP00000410108
  ensembl transcript: ENST00000437099
  gene symbol: GAS7
  hgvsc: ENST00000437099.2:c.110A>G
  hgvsp: ENSP00000410108.2:p.Asn37Ser
  variant of: http://identifiers.org/hgnc/4169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007237
  ensembl transcript: ENST00000579140
  gene symbol: GAS7
  hgvsc: ENST00000579140.1:n.268+16655A>G
  variant of: http://identifiers.org/hgnc/4169
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007237
  ensembl protein: ENSP00000446214
  ensembl transcript: ENST00000540214
  gene symbol: GAS7
  hgvsc: ENST00000540214.1:c.110A>G
  hgvsp: ENSP00000446214.1:p.Asn37Ser
  variant of: http://identifiers.org/hgnc/4169
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007237
  ensembl protein: ENSP00000462304
  ensembl transcript: ENST00000584146
  gene symbol: GAS7
  hgvsc: ENST00000584146.2:c.110A>G
  hgvsp: ENSP00000462304.2:p.Asn37Ser
  variant of: http://identifiers.org/hgnc/4169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007237
  ensembl transcript: ENST00000578655
  gene symbol: GAS7
  hgvsc: ENST00000578655.1:n.348A>G
  variant of: http://identifiers.org/hgnc/4169
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007237
  ensembl protein: ENSP00000463551
  ensembl transcript: ENST00000580043
  gene symbol: GAS7
  hgvsc: ENST00000580043.1:c.110A>G
  hgvsp: ENSP00000463551.1:p.Asn37Ser
  variant of: http://identifiers.org/hgnc/4169
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007237
  ensembl protein: ENSP00000463527
  ensembl transcript: ENST00000579158
  gene symbol: GAS7
  hgvsc: ENST00000579158.1:c.110A>G
  hgvsp: ENSP00000463527.2:p.Asn37Ser
  variant of: http://identifiers.org/hgnc/4169
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007237
  ensembl protein: ENSP00000443265
  ensembl transcript: ENST00000542249
  gene symbol: GAS7
  hgvsc: ENST00000542249.1:c.110A>G
  hgvsp: ENSP00000443265.2:p.Asn37Ser
  variant of: http://identifiers.org/hgnc/4169
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007237
  ensembl protein: ENSP00000407552
  ensembl transcript: ENST00000432992
  gene symbol: GAS7
  hgvsc: ENST00000432992.2:c.302A>G
  hgvsp: ENSP00000407552.2:p.Asn101Ser
  variant of: http://identifiers.org/hgnc/4169
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007237
  ensembl protein: ENSP00000464240
  ensembl transcript: ENST00000585266
  gene symbol: GAS7
  hgvsc: ENST00000585266.1:c.122A>G
  hgvsp: ENSP00000464240.2:p.Asn41Ser
  variant of: http://identifiers.org/hgnc/4169
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14336
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10779
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn101Ser
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD

17-9923099-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9923099
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 9923099
    reference: chr 17
allele count: 1
allele frequency: 8.288300235387727e-6
allele num: 120652
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007237
  ensembl protein: ENSP00000410108
  ensembl transcript: ENST00000437099
  gene symbol: GAS7
  hgvsc: ENST00000437099.2:c.107C>T
  hgvsp: ENSP00000410108.2:p.Thr36Ile
  variant of: http://identifiers.org/hgnc/4169
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007237
  ensembl protein: ENSP00000462304
  ensembl transcript: ENST00000584146
  gene symbol: GAS7
  hgvsc: ENST00000584146.2:c.107C>T
  hgvsp: ENSP00000462304.2:p.Thr36Ile
  variant of: http://identifiers.org/hgnc/4169
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007237
  ensembl protein: ENSP00000463551
  ensembl transcript: ENST00000580043
  gene symbol: GAS7
  hgvsc: ENST00000580043.1:c.107C>T
  hgvsp: ENSP00000463551.1:p.Thr36Ile
  variant of: http://identifiers.org/hgnc/4169
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007237
  ensembl protein: ENSP00000462897
  ensembl transcript: ENST00000584389
  gene symbol: GAS7
  hgvsc: ENST00000584389.1:c.107C>T
  hgvsp: ENSP00000462897.1:p.Thr36Ile
  variant of: http://identifiers.org/hgnc/4169
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007237
  ensembl protein: ENSP00000407552
  ensembl transcript: ENST00000432992
  gene symbol: GAS7
  hgvsc: ENST00000432992.2:c.299C>T
  hgvsp: ENSP00000407552.2:p.Thr100Ile
  variant of: http://identifiers.org/hgnc/4169
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007237
  ensembl protein: ENSP00000464494
  ensembl transcript: ENST00000578599
  gene symbol: GAS7
  hgvsc: ENST00000578599.1:c.107C>T
  hgvsp: ENSP00000464494.1:p.Thr36Ile
  variant of: http://identifiers.org/hgnc/4169
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007237
  ensembl protein: ENSP00000379421
  ensembl transcript: ENST00000396115
  gene symbol: GAS7
  hgvsc: ENST00000396115.2:c.107C>T
  hgvsp: ENSP00000379421.2:p.Thr36Ile
  variant of: http://identifiers.org/hgnc/4169
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007237
  ensembl protein: ENSP00000443265
  ensembl transcript: ENST00000542249
  gene symbol: GAS7
  hgvsc: ENST00000542249.1:c.107C>T
  hgvsp: ENSP00000443265.2:p.Thr36Ile
  variant of: http://identifiers.org/hgnc/4169
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007237
  ensembl protein: ENSP00000463527
  ensembl transcript: ENST00000579158
  gene symbol: GAS7
  hgvsc: ENST00000579158.1:c.107C>T
  hgvsp: ENSP00000463527.2:p.Thr36Ile
  variant of: http://identifiers.org/hgnc/4169
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007237
  ensembl protein: ENSP00000464240
  ensembl transcript: ENST00000585266
  gene symbol: GAS7
  hgvsc: ENST00000585266.1:c.119C>T
  hgvsp: ENSP00000464240.2:p.Thr40Ile
  variant of: http://identifiers.org/hgnc/4169
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007237
  ensembl transcript: ENST00000578655
  gene symbol: GAS7
  hgvsc: ENST00000578655.1:n.345C>T
  variant of: http://identifiers.org/hgnc/4169
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007237
  ensembl protein: ENSP00000446214
  ensembl transcript: ENST00000540214
  gene symbol: GAS7
  hgvsc: ENST00000540214.1:c.107C>T
  hgvsp: ENSP00000446214.1:p.Thr36Ile
  variant of: http://identifiers.org/hgnc/4169
canonical: true
consequence: missense
filter: PASS
hgvs: p.Thr100Ile
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 1640
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 978
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1470
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18831
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1688
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 567
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 543
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.261113372224483e-5
allele num: 44226
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13110
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3236
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6692
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6132
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8750
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.82e0

FS
type: SiteQuality
SIO_000300: 1.777e0

VQSLOD
type: SiteQuality
SIO_000300: 7.6e-2

QD
type: SiteQuality
SIO_000300: 1.169e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.194e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.26e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

DP
type: SiteQuality
SIO_000300: 1.033063e6

GenotypeQuality
all individuals: 314
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 957
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1875
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 745
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 713
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 836
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 415
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1304
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34753
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9462
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.459427904261529e-4
allele num: 6852
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3686
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13688
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48952
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.56e0

FS
type: SiteQuality
SIO_000300: 1.97e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.83e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.533e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.36e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.503e0

DP
type: SiteQuality
SIO_000300: 1.10014e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 239
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36633
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1910
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 134
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 665
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 926
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1406
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3860
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50692
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13928
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.329080276448698e-4
allele num: 7524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7060
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9742
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.565e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.12737e6

MQRankSum
type: SiteQuality
SIO_000300: 6.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

FS
type: SiteQuality
SIO_000300: 2.504e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.49e0

GenotypeQuality
all individuals: 1082
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35464
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1831
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1017
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 856
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 901
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 736
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1166
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12724
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1405
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 126
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1231
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7146
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3798
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.960015680125441e-5
allele num: 51020
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.330140994945464e-4
allele num: 7518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 658
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14002
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.38e-1

MQ
type: SiteQuality
SIO_000300: 5.901e1

QD
type: SiteQuality
SIO_000300: 9.390000000000001e0

DP
type: SiteQuality
SIO_000300: 1.140889e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.91e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 7.052e0

VQSLOD
type: SiteQuality
SIO_000300: 3.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

GenotypeQuality
all individuals: 464
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 834
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1132
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3912
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9874
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.926930784646216e-5
allele num: 51896
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7260
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7618
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South Asian
type: Population
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 666
num of homozygotes: 0

VQSLOD
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SIO_000300: -2.294e0

FS
type: SiteQuality
SIO_000300: 3.484e0

MQRankSum
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SIO_000300: 1.44e0

MQ
type: SiteQuality
SIO_000300: 5.754e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -9.88e-1

ReadPosRankSum
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SIO_000300: 1.46e0

QD
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DP
type: SiteQuality
SIO_000300: 1.153284e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.88e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4016
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 682
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9990
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.897317193488407e-5
allele num: 52706
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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VQSLOD
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SIO_000300: -1.192e0

BaseQRankSum
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SIO_000300: -2.72e-1

InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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DP
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SIO_000300: 1.162131e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: 3.32e-1

MQ
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 14754
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4446
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 708
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.7821499857428e-5
allele num: 56112
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 5.926e1

VQSLOD
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MQRankSum
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FS
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InbreedingCoeff
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SIO_000300: -1.4e-3

QD
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ReadPosRankSum
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SIO_000300: 1.28e0

ClippingRankSum
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SIO_000300: -1.106e0

DP
type: SiteQuality
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BaseQRankSum
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SIO_000300: -1.004e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10458
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4382
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.76223965377333e-5
allele num: 14788
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56200
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 706
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7878
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.843787842092516e-4
allele num: 8258
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.24e-1

DP
type: SiteQuality
SIO_000300: 1.221027e6

MQ
type: SiteQuality
SIO_000300: 5.962e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.6e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.501e0

MQRankSum
type: SiteQuality
SIO_000300: 5.55e-1

QD
type: SiteQuality
SIO_000300: 2.128e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.88e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.718624025799516e-5
allele num: 14884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 730
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.750332563187006e-5
allele num: 57132
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.64e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.3428e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.41e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.277e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 61078
num of homozygotes: 0

South Asian
type: Population
allele count: 1
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allele num: 15558
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Other
type: Population
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.859e0

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
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QD
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 6.380806533945891e-5
allele num: 15672
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 61732
num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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Latino
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ReadPosRankSum
type: SiteQuality
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DP
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BaseQRankSum
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MQRankSum
type: SiteQuality
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QD
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 9.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.96e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11080
num of homozygotes: 0

European (Non-Finnish)
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allele count: 17
allele frequency: 2.748763056624519e-4
allele num: 61846
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8402
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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African
type: Population
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allele frequency: 3.197612449371136e-4
allele num: 9382
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
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QD
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VQSLOD
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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FS
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MQ
type: SiteQuality
SIO_000300: 5.928e1

DP
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BaseQRankSum
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SIO_000300: -1.674e0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 4.75e1
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
all individuals: 476
bin: 9.75e1
variant carriers: 9

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47859
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.456310679611651e-4
allele num: 61800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11080
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15700
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5218
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9364
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.080000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.93e1

FS
type: SiteQuality
SIO_000300: 5.29e-1

DP
type: SiteQuality
SIO_000300: 1.313912e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.17e-1

QD
type: SiteQuality
SIO_000300: 9.67e0

VQSLOD
type: SiteQuality
SIO_000300: 2.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.011e0

GenotypeQuality
all individuals: 270
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
all individuals: 478
bin: 9.75e1
variant carriers: 11

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 68
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11094
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8396
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 5.728835136855506e-4
allele num: 15710
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.234361860404942e-5
allele num: 61836
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5222
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.913e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

FS
type: SiteQuality
SIO_000300: 5.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.7e-2

DP
type: SiteQuality
SIO_000300: 1.315267e6

MQRankSum
type: SiteQuality
SIO_000300: 3.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.93e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e-1

QD
type: SiteQuality
SIO_000300: 9.84e0

GenotypeQuality
all individuals: 47
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 111
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.358896095637798e-5
allele num: 15726
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.693992955698453e-5
allele num: 61894
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.065416577881952e-4
allele num: 9386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.912777352716144e-4
allele num: 5228
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11090
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.137e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.08e-1

DP
type: SiteQuality
SIO_000300: 1.317846e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.71e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.14e-1

FS
type: SiteQuality
SIO_000300: 3.243e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

GenotypeQuality
all individuals: 2611
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11054
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8368
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.629566861128312e-5
allele num: 61366
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9258
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5186
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.85e-1

FS
type: SiteQuality
SIO_000300: 8.446999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.53e0

DP
type: SiteQuality
SIO_000300: 1.306163e6

MQ
type: SiteQuality
SIO_000300: 5.847e1

QD
type: SiteQuality
SIO_000300: 1.412e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.95e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.401e0

GenotypeQuality
all individuals: 66
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 432
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variant carriers: 0

GenotypeQuality
all individuals: 267
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 249
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variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.258602711157456e-5
allele num: 61376
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.419309282321222e-5
allele num: 15578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8340
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.809627216793341e-4
allele num: 11052
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5216
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9274
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.096e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 8.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.4e-2

MQ
type: SiteQuality
SIO_000300: 5.942e1

VQSLOD
type: SiteQuality
SIO_000300: -1.626e0

FS
type: SiteQuality
SIO_000300: 3.234e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.8e-2

DP
type: SiteQuality
SIO_000300: 1.302653e6

MQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

GenotypeQuality
all individuals: 46352
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
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GenotypeQuality
all individuals: 6350
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 467
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variant carriers: 3

GenotypeQuality
all individuals: 291
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variant carriers: 0

GenotypeQuality
all individuals: 2569
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GenotypeQuality
all individuals: 402
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GenotypeQuality
all individuals: 202
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GenotypeQuality
all individuals: 507
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GenotypeQuality
all individuals: 487
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GenotypeQuality
all individuals: 389
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GenotypeQuality
all individuals: 589
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variant carriers: 0

GenotypeQuality
all individuals: 161
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variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.084363478638039e-4
allele num: 9222
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5212
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11030
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8340
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.633666601320003e-5
allele num: 61212
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.437491953135059e-5
allele num: 15534
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.305e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.9e-2

QD
type: SiteQuality
SIO_000300: 9.779999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -6.441e-1

FS
type: SiteQuality
SIO_000300: 9.534000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: -4.0e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

DP
type: SiteQuality
SIO_000300: 1.299235e6

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 660
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GenotypeQuality
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GenotypeQuality
all individuals: 465
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GenotypeQuality
all individuals: 181
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GenotypeQuality
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GenotypeQuality
all individuals: 63
bin: 9.25e1
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GenotypeQuality
all individuals: 2519
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5208
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9198
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15476
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11008
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.203369434416366e-4
allele num: 8310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60986
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.293226e6

VQSLOD
type: SiteQuality
SIO_000300: -3.943e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.359e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.559e0

MQ
type: SiteQuality
SIO_000300: 5.83e1

MQRankSum
type: SiteQuality
SIO_000300: 8.39e-1

QD
type: SiteQuality
SIO_000300: 1.46e0

GenotypeQuality
all individuals: 462
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7345
bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 242
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GenotypeQuality
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GenotypeQuality
all individuals: 27
bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
all individuals: 358
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GenotypeQuality
all individuals: 111
bin: 1.25e1
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GenotypeQuality
all individuals: 156
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
all individuals: 698
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GenotypeQuality
all individuals: 45590
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 724
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9124
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.494349915573451e-5
allele num: 15398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5162
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8272
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60566
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10976
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.006e0

MQRankSum
type: SiteQuality
SIO_000300: 6.19e-1

DP
type: SiteQuality
SIO_000300: 1.284283e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.56e-1

FS
type: SiteQuality
SIO_000300: 8.077999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.574e-1

QD
type: SiteQuality
SIO_000300: 1.096e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.72e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 529
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8786
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 4.75e1
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GenotypeQuality
all individuals: 920
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
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GenotypeQuality
all individuals: 43623
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GenotypeQuality
all individuals: 60
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
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allele frequency: 1.680502806439687e-5
allele num: 59506
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
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MQRankSum
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BaseQRankSum
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DP
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MQ
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InbreedingCoeff
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FS
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ClippingRankSum
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 9.372071227741331e-5
allele num: 10670
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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European (Non-Finnish)
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allele frequency: 0.0e0
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African
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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MQ
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MQRankSum
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ReadPosRankSum
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FS
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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East Asian
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allele frequency: 1.26008064516129e-4
allele num: 7936
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African
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allele count: 0
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Latino
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allele frequency: 0.0e0
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Other
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num of homozygotes: 0

QD
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DP
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BaseQRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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MQRankSum
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FS
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10588
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.743375174337517e-5
allele num: 57360
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7892
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South Asian
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allele frequency: 0.0e0
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ClippingRankSum
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SIO_000300: -1.237e0

VQSLOD
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MQ
type: SiteQuality
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MQRankSum
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BaseQRankSum
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DP
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QD
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InbreedingCoeff
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ReadPosRankSum
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FS
type: SiteQuality
SIO_000300: 1.583e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 1.389274798555154e-4
allele num: 7198
num of homozygotes: 0

African
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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MQ
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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African
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European (Finnish)
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East Asian
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South Asian
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Other
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MQRankSum
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ReadPosRankSum
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DP
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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MQ
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FS
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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East Asian
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Latino
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South Asian
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European (Finnish)
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European (Non-Finnish)
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VQSLOD
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DP
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ClippingRankSum
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MQ
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MQRankSum
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FS
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Other
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European (Finnish)
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Latino
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South Asian
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African
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East Asian
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BaseQRankSum
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QD
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FS
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MQ
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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DP
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4138
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.553036185743128e-4
allele num: 12878
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47088
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7300
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9008
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.0e-3

DP
type: SiteQuality
SIO_000300: 8.56556e5

MQRankSum
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SIO_000300: 5.97e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.76e0

QD
type: SiteQuality
SIO_000300: 1.372e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 1
allele frequency: 1.450116009280742e-4
allele num: 6896
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5950
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3886
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44114
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 8.107669855683477e-5
allele num: 12334
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.877e1

FS
type: SiteQuality
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BaseQRankSum
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SIO_000300: 3.86e-1

ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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DP
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QD
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VQSLOD
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SIO_000300: 2.47e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10782
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3352
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5026
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 1.078515962036238e-4
allele num: 37088
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 5786
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 548
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.323101349563376e-4
allele num: 7558
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.59e-1

QD
type: SiteQuality
SIO_000300: 1.443e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
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MQRankSum
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SIO_000300: 0.0e0

FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.44e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.31e0

DP
type: SiteQuality
SIO_000300: 6.8999e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.56e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 7558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37088
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5026
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African
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allele count: 1
allele frequency: 1.728309713100588e-4
allele num: 5786
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3352
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.31e0

VQSLOD
type: SiteQuality
SIO_000300: 5.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.44e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.56e-1

DP
type: SiteQuality
SIO_000300: 6.8999e5

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.047502047502048e-4
allele num: 4884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 534
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3288
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36156
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10606
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.83221e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e-1

InbreedingCoeff
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SIO_000300: 1.44e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.55e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.054e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.05e-1

QD
type: SiteQuality
SIO_000300: 1.359e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7012
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10028
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African
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allele count: 2
allele frequency: 3.756574004507889e-4
allele num: 5324
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3136
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 33930
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Other
type: Population
allele count: 0
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allele num: 520
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VQSLOD
type: SiteQuality
SIO_000300: -4.721e-1

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-2

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.705e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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East Asian
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South Asian
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ClippingRankSum
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FS
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VQSLOD
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DP
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5252
num of homozygotes: 0

Latino
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allele count: 0
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Other
type: Population
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East Asian
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allele frequency: 6.048387096774193e-3
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South Asian
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European (Finnish)
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African
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MQ
type: SiteQuality
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DP
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BaseQRankSum
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InbreedingCoeff
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FS
type: SiteQuality
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MQRankSum
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ReadPosRankSum
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VQSLOD
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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East Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 5252
num of homozygotes: 0

Latino
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South Asian
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Other
type: Population
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
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MQRankSum
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FS
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DP
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QD
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MQ
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1758
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 98
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2524
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5182
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 294
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 492
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.820000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

DP
type: SiteQuality
SIO_000300: 2.40574e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.58e-1

QD
type: SiteQuality
SIO_000300: 7.93e0

MQRankSum
type: SiteQuality
SIO_000300: -1.231e0

VQSLOD
type: SiteQuality
SIO_000300: -2.31e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5316
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 502
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 38
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 296
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 100
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

QD
type: SiteQuality
SIO_000300: 6.41e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

DP
type: SiteQuality
SIO_000300: 2.52663e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.530000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.37e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 504
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 100
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 298
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1778
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 3.568879371877231e-4
allele num: 2802
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.41e-2

DP
type: SiteQuality
SIO_000300: 2.56827e5

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.19e0

MQRankSum
type: SiteQuality
SIO_000300: -1.031e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.749e0

QD
type: SiteQuality
SIO_000300: 9.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.25e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 36
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2822
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 102
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.73134328358209e-4
allele num: 5360
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1760
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.389999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.17e-1

FS
type: SiteQuality
SIO_000300: 3.721e0

QD
type: SiteQuality
SIO_000300: 1.395e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.55e-1

DP
type: SiteQuality
SIO_000300: 2.62151e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 100
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2926
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5448
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 300
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1804
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.35e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.67497e5

FS
type: SiteQuality
SIO_000300: 3.68e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.295e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.3e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 5.41e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 3130
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 104
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1854
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.779359430604982e-4
allele num: 5620
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.389999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.18e0

ReadPosRankSum
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QD
type: SiteQuality
SIO_000300: 1.168e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.16e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.86e-1

VQSLOD
type: SiteQuality
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 70
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6190
num of homozygotes: 0

African
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allele count: 1
allele frequency: 4.995004995004995e-4
allele num: 2002
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 570
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.79e-1

DP
type: SiteQuality
SIO_000300: 3.21862e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.5e-2

FS
type: SiteQuality
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MQRankSum
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SIO_000300: 1.03e-1

MQ
type: SiteQuality
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ClippingRankSum
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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QD
type: SiteQuality
SIO_000300: 9.73e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 4.789272030651341e-4
allele num: 2088
num of homozygotes: 0

East Asian
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Other
type: Population
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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Latino
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InbreedingCoeff
type: SiteQuality
SIO_000300: -6.12e-2

VQSLOD
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MQ
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ReadPosRankSum
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MQRankSum
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FS
type: SiteQuality
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ClippingRankSum
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DP
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

South Asian
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 376
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 100
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 136
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.491646778042959e-4
allele num: 6704
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.71e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.06e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.23e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.079e0

VQSLOD
type: SiteQuality
SIO_000300: -2.805e0

MQ
type: SiteQuality
SIO_000300: 5.931e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.15e-1

DP
type: SiteQuality
SIO_000300: 3.52438e5

GenotypeQuality
all individuals: 1711
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1594
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 801
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
all individuals: 712
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17698
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 191
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 670
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 170
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5382
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 438
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.37e-2

QD
type: SiteQuality
SIO_000300: 7.84e0

VQSLOD
type: SiteQuality
SIO_000300: 3.52e0

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 3.98263e5

MQ
type: SiteQuality
SIO_000300: 5.376e1

GenotypeQuality
all individuals: 48
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24983
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 716
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2938
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 8.305647840531562e-4
allele num: 2408
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8186
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 212
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 464
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5778
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 710
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.761e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.638e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.98e-2

DP
type: SiteQuality
SIO_000300: 4.2208e5

MQRankSum
type: SiteQuality
SIO_000300: -7.97e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.326e0

QD
type: SiteQuality
SIO_000300: 1.056e1

GenotypeQuality
all individuals: 148
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1358
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24471
bin: 2.25e1
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 829
bin: 3.25e1
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GenotypeQuality
all individuals: 134
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6714
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.030927835051546e-4
allele num: 9700
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2660
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.07e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.435e-1

DP
type: SiteQuality
SIO_000300: 4.77663e5

MQRankSum
type: SiteQuality
SIO_000300: 9.409999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.301e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.02e-2

FS
type: SiteQuality
SIO_000300: 3.899e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

GenotypeQuality
all individuals: 156
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1647
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variant carriers: 1

GenotypeQuality
all individuals: 56
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 64
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GenotypeQuality
all individuals: 228
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2750
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 694
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 9.809691975671964e-5
allele num: 10194
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 338
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.386004514672686e-3
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7044
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.68e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.59e-1

DP
type: SiteQuality
SIO_000300: 4.95285e5

ClippingRankSum
type: SiteQuality
SIO_000300: -2.63e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.653e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.69e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

QD
type: SiteQuality
SIO_000300: 1.203e1

VQSLOD
type: SiteQuality
SIO_000300: -7.96e-2

GenotypeQuality
all individuals: 1130
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27547
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 243
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GenotypeQuality
all individuals: 148
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GenotypeQuality
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GenotypeQuality
all individuals: 902
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1109
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 238
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10850
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.31578947368421e-3
allele num: 760
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2834
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 972
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7312
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 216
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.2746e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.47e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.678e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.47e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.908e0

DP
type: SiteQuality
SIO_000300: 5.11941e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.77e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.0e-1

QD
type: SiteQuality
SIO_000300: 1.277e1

GenotypeQuality
all individuals: 793
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variant carriers: 0

GenotypeQuality
all individuals: 250
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GenotypeQuality
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GenotypeQuality
all individuals: 598
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GenotypeQuality
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GenotypeQuality
all individuals: 16034
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GenotypeQuality
all individuals: 1038
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GenotypeQuality
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GenotypeQuality
all individuals: 246
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GenotypeQuality
all individuals: 137
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GenotypeQuality
all individuals: 161
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GenotypeQuality
all individuals: 1262
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GenotypeQuality
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GenotypeQuality
all individuals: 92
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GenotypeQuality
all individuals: 56
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GenotypeQuality
all individuals: 151
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1056
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7460
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2918
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 226
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.23428e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.307e0

FS
type: SiteQuality
SIO_000300: 3.522e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.61e-1

QD
type: SiteQuality
SIO_000300: 4.25e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.519e0

MQRankSum
type: SiteQuality
SIO_000300: -8.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.22e-2

GenotypeQuality
all individuals: 176
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 538
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variant carriers: 0

GenotypeQuality
all individuals: 800
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GenotypeQuality
all individuals: 160
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GenotypeQuality
all individuals: 1175
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2309
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GenotypeQuality
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GenotypeQuality
all individuals: 13754
bin: 7.5e0
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GenotypeQuality
all individuals: 1361
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
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GenotypeQuality
all individuals: 175
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GenotypeQuality
all individuals: 139
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variant carriers: 0

GenotypeQuality
all individuals: 56
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GenotypeQuality
all individuals: 7437
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3068
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.292657704239917e-4
allele num: 7736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1158
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 948
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12568
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.01e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.663e0

DP
type: SiteQuality
SIO_000300: 5.49548e5

VQSLOD
type: SiteQuality
SIO_000300: -2.052e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.7e-2

GenotypeQuality
all individuals: 972
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 682
bin: 2.5e0
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 141
bin: 8.25e1
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GenotypeQuality
all individuals: 560
bin: 3.75e1
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GenotypeQuality
all individuals: 1919
bin: 1.75e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
all individuals: 12658
bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
all individuals: 174
bin: 4.75e1
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GenotypeQuality
all individuals: 144
bin: 5.25e1
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GenotypeQuality
all individuals: 58
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 242
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.166561114629512e-4
allele num: 3158
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1222
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 7.612667478684531e-5
allele num: 13136
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 574
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 990
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.63173e5

VQSLOD
type: SiteQuality
SIO_000300: 1.45e0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.84e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.72e-2

QD
type: SiteQuality
SIO_000300: 1.14e1

FS
type: SiteQuality
SIO_000300: 3.883e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 164
bin: 9.75e1
variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
all individuals: 250
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1469
bin: 2.75e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 1.2453300124533e-4
allele num: 8030
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 6.226650062266501e-4
allele num: 3212
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 7.299270072992701e-5
allele num: 13700
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 248
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1288
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1072
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.74305e5

MQRankSum
type: SiteQuality
SIO_000300: -1.85e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.22e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.21e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.25e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.57e-2

QD
type: SiteQuality
SIO_000300: 1.381e1

GenotypeQuality
all individuals: 657
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 266
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8162
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 710
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3306
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1178
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14558
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -8.564000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

QD
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SIO_000300: 9.01e0

DP
type: SiteQuality
SIO_000300: 5.89179e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.32e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.026e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.026e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 6.459948320413437e-4
allele num: 1548
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1322
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15862
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 274
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3436
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8428
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.064e1

MQ
type: SiteQuality
SIO_000300: 5.928e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.99e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.3e-1

DP
type: SiteQuality
SIO_000300: 6.11303e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.27e-1

FS
type: SiteQuality
SIO_000300: 8.141e0

MQRankSum
type: SiteQuality
SIO_000300: -5.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.330000000000001e-1

GenotypeQuality
all individuals: 220
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1498
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 193
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variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 284
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16626
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 6.963788300835655e-4
allele num: 1436
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3506
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.86e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.408e0

MQRankSum
type: SiteQuality
SIO_000300: 7.17e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.87e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.09e1

DP
type: SiteQuality
SIO_000300: 6.25145e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.87e-1

GenotypeQuality
all individuals: 62
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 161
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GenotypeQuality
all individuals: 1157
bin: 1.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 330
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2018
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8988
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1178
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1900
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.583979328165374e-4
allele num: 3870
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

QD
type: SiteQuality
SIO_000300: 1.211e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.45e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.733e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.98e-1

DP
type: SiteQuality
SIO_000300: 6.7309e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 242
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 505
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variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 8.25e1
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GenotypeQuality
all individuals: 5191
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GenotypeQuality
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GenotypeQuality
all individuals: 34021
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 233
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variant carriers: 73

GenotypeQuality
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GenotypeQuality
all individuals: 309
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 65
bin: 9.25e1
variant carriers: 5

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9084
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3992
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1994
num of homozygotes: 0

East Asian
type: Population
allele count: 72
allele frequency: 3.25497287522604e-2
allele num: 2212
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.857142857142857e-3
allele num: 350
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.84214603912454e-5
allele num: 20652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1228
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.46e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 7.15e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.23e-1

FS
type: SiteQuality
SIO_000300: 6.44e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.07e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.211e1

DP
type: SiteQuality
SIO_000300: 6.84119e5

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1111
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 2.344995779007598e-4
allele num: 21322
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1294
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.46669955599408e-4
allele num: 4054
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2092
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2278
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 350
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9140
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.79e0

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

QD
type: SiteQuality
SIO_000300: 1.527e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.28e-1

FS
type: SiteQuality
SIO_000300: 7.662e0

MQRankSum
type: SiteQuality
SIO_000300: -3.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.34e-1

DP
type: SiteQuality
SIO_000300: 6.90398e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-2

GenotypeQuality
all individuals: 71
bin: 8.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 385
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GenotypeQuality
all individuals: 66
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30362
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 438
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3308
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 1.591723040191007e-3
allele num: 5026
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2018
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10294
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MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.17e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 8.12638e5

FS
type: SiteQuality
SIO_000300: 1.375e0

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -8.1e-3

QD
type: SiteQuality
SIO_000300: 1.253e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.064e0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 187
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variant carriers: 24

GenotypeQuality
all individuals: 218
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GenotypeQuality
all individuals: 76
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1973
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 362
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GenotypeQuality
all individuals: 511
bin: 4.75e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2154
num of homozygotes: 0

Latino
type: Population
allele count: 11
allele frequency: 2.752752752752753e-3
allele num: 3996
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5218
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 462
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 4.608578100036869e-4
allele num: 32548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3576
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.41455e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.9e-3

QD
type: SiteQuality
SIO_000300: 1.294e1

FS
type: SiteQuality
SIO_000300: 3.027e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e0

VQSLOD
type: SiteQuality
SIO_000300: 1.94e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.32e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.8e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1461
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1727
bin: 5.25e1
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GenotypeQuality
all individuals: 76
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GenotypeQuality
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GenotypeQuality
all individuals: 458
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1787
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5196
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.949592290585619e-5
allele num: 43168
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6306
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12252
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3140
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.75e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.95693e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

VQSLOD
type: SiteQuality
SIO_000300: 1.22e0

QD
type: SiteQuality
SIO_000300: 1.137e1

GenotypeQuality
all individuals: 102
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 755
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variant carriers: 0

GenotypeQuality
all individuals: 1073
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1216
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12792
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6964
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5684
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46126
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.429388221841052e-4
allele num: 6996
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3434
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.146e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

DP
type: SiteQuality
SIO_000300: 1.039074e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.998e0

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.41e0

VQSLOD
type: SiteQuality
SIO_000300: 1.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.55e-1

QD
type: SiteQuality
SIO_000300: 1.324e1

GenotypeQuality
all individuals: 277
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29263
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1061
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variant carriers: 0

GenotypeQuality
all individuals: 439
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variant carriers: 0

GenotypeQuality
all individuals: 72
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variant carriers: 0

GenotypeQuality
all individuals: 1423
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
all individuals: 1076
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.224221687154142e-5
allele num: 47346
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12946
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7116
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.380452788514633e-4
allele num: 7244
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

FS
type: SiteQuality
SIO_000300: 1.912e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.399999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.8e-1

DP
type: SiteQuality
SIO_000300: 1.06406e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.289e0

QD
type: SiteQuality
SIO_000300: 1.259e1

GenotypeQuality
all individuals: 232
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 427
bin: 5.75e1
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GenotypeQuality
all individuals: 1076
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variant carriers: 0

GenotypeQuality
all individuals: 17706
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 211
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variant carriers: 0

GenotypeQuality
all individuals: 1423
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variant carriers: 0

GenotypeQuality
all individuals: 1061
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 759
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variant carriers: 0

GenotypeQuality
all individuals: 29263
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 569
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variant carriers: 0

GenotypeQuality
all individuals: 88
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GenotypeQuality
all individuals: 439
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1636
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2379
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 2.760905577029266e-4
allele num: 7244
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47346
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12946
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7116
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3562
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.912e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.289e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

QD
type: SiteQuality
SIO_000300: 1.259e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.06406e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.77e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.399999999999999e-1

GenotypeQuality
all individuals: 1016
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
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variant carriers: 0

GenotypeQuality
all individuals: 17006
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 585
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variant carriers: 0

GenotypeQuality
all individuals: 985
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variant carriers: 0

GenotypeQuality
all individuals: 160
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GenotypeQuality
all individuals: 653
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variant carriers: 0

GenotypeQuality
all individuals: 2497
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variant carriers: 0

GenotypeQuality
all individuals: 84
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GenotypeQuality
all individuals: 1297
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variant carriers: 0

GenotypeQuality
all individuals: 74
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variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 1.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.745744096650192e-4
allele num: 3642
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.335113484646195e-4
allele num: 7490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6048
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7248
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.815046543567831e-4
allele num: 13106
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 640
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.5e0

VQSLOD
type: SiteQuality
SIO_000300: 9.13e-1

QD
type: SiteQuality
SIO_000300: 1.33e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.99e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.077831e6

MQRankSum
type: SiteQuality
SIO_000300: -4.71e-1

FS
type: SiteQuality
SIO_000300: 1.732e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.4e-1

GenotypeDepth
all individuals: 28451
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 7.75e1
variant carriers: 1

GenotypeDepth
all individuals: 5
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 503
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 530
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 232
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 17
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variant carriers: 0

GenotypeDepth
all individuals: 3643
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9
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variant carriers: 0

GenotypeDepth
all individuals: 27
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1237
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 606
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variant carriers: 0

GenotypeQuality
all individuals: 152
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GenotypeQuality
all individuals: 60
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variant carriers: 0

GenotypeQuality
all individuals: 195
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variant carriers: 0

GenotypeQuality
all individuals: 9
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GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 5.25e1
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GenotypeQuality
all individuals: 2671
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GenotypeQuality
all individuals: 1607
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GenotypeQuality
all individuals: 91
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
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GenotypeQuality
all individuals: 230
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 2.25e1
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GenotypeQuality
all individuals: 2941
bin: 7.75e1
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GenotypeQuality
all individuals: 39302
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1612
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 105
bin: 5.75e1
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GenotypeQuality
all individuals: 739
bin: 9.25e1
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GenotypeQuality
all individuals: 9689
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.63948332369385e-5
allele num: 10374
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.647526807333103e-5
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506614035616356e-5
allele num: 66374
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16112
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.67e0

DP
type: SiteQuality
SIO_000300: 1.717771e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.56e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.3e-1

MQ
type: SiteQuality
SIO_000300: 5.981e1

FS
type: SiteQuality
SIO_000300: 1.0535e1

QD
type: SiteQuality
SIO_000300: 1.374e1