18-21112133-GAC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21112133
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 21112131
    reference: chr 18
allele count: 109
allele frequency: 8.977695779659342e-4
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000467150
  ensembl transcript: ENST00000593280
  gene symbol: NPC1
  hgvsc: ENST00000593280.2:c.86+1184_86+1185delGT
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000269228
  ensembl transcript: ENST00000269228
  gene symbol: NPC1
  hgvsc: ENST00000269228.5:c.*31_*32delGT
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000468438
  ensembl transcript: ENST00000591107
  gene symbol: NPC1
  hgvsc: ENST00000591107.2:c.431+1184_431+1185delGT
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000408606
  ensembl transcript: ENST00000412552
  gene symbol: NPC1
  hgvsc: ENST00000412552.2:c.*31_*32delGT
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000467636
  ensembl transcript: ENST00000591051
  gene symbol: NPC1
  hgvsc: ENST00000591051.1:c.*31_*32delGT
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000464755
  ensembl transcript: ENST00000590723
  gene symbol: NPC1
  hgvsc: ENST00000590723.1:c.163+1184_163+1185delGT
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141458
  ensembl transcript: ENST00000588867
  gene symbol: NPC1
  hgvsc: ENST00000588867.1:n.1551_1552delGT
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000468321
  ensembl transcript: ENST00000586150
  gene symbol: NPC1
  hgvsc: ENST00000586150.1:c.509+1184_509+1185delGT
  variant of: http://identifiers.org/hgnc/7897
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3776
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 8.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2932
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4015
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3032
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6053
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6470
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 7741
  bin: 9.75e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4959
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1824
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6600
  bin: 5.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: Latino
reference allele: GAC
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/18-21112138-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21112138
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 21112138
    reference: chr 18
allele count: 19
allele frequency: 1.564919447830527e-4
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000468438
  ensembl transcript: ENST00000591107
  gene symbol: NPC1
  hgvsc: ENST00000591107.2:c.431+1181T>G
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000269228
  ensembl transcript: ENST00000269228
  gene symbol: NPC1
  hgvsc: ENST00000269228.5:c.*28T>G
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000467636
  ensembl transcript: ENST00000591051
  gene symbol: NPC1
  hgvsc: ENST00000591051.1:c.*28T>G
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141458
  ensembl transcript: ENST00000588867
  gene symbol: NPC1
  hgvsc: ENST00000588867.1:n.1548T>G
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000464755
  ensembl transcript: ENST00000590723
  gene symbol: NPC1
  hgvsc: ENST00000590723.1:c.163+1181T>G
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000467150
  ensembl transcript: ENST00000593280
  gene symbol: NPC1
  hgvsc: ENST00000593280.2:c.86+1181T>G
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000408606
  ensembl transcript: ENST00000412552
  gene symbol: NPC1
  hgvsc: ENST00000412552.2:c.*28T>G
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000468321
  ensembl transcript: ENST00000586150
  gene symbol: NPC1
  hgvsc: ENST00000586150.1:c.509+1181T>G
  variant of: http://identifiers.org/hgnc/7897
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3779
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7720
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 4962
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6605
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2930
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2379
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3025
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6056
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6476
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4017
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5591
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2330
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1861
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

18-21112149-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21112149
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 21112149
    reference: chr 18
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000269228
  ensembl transcript: ENST00000269228
  gene symbol: NPC1
  hgvsc: ENST00000269228.5:c.*17C>G
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000408606
  ensembl transcript: ENST00000412552
  gene symbol: NPC1
  hgvsc: ENST00000412552.2:c.*17C>G
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000464755
  ensembl transcript: ENST00000590723
  gene symbol: NPC1
  hgvsc: ENST00000590723.1:c.163+1170C>G
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000467636
  ensembl transcript: ENST00000591051
  gene symbol: NPC1
  hgvsc: ENST00000591051.1:c.*17C>G
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000467150
  ensembl transcript: ENST00000593280
  gene symbol: NPC1
  hgvsc: ENST00000593280.2:c.86+1170C>G
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141458
  ensembl transcript: ENST00000588867
  gene symbol: NPC1
  hgvsc: ENST00000588867.1:n.1537C>G
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000468321
  ensembl transcript: ENST00000586150
  gene symbol: NPC1
  hgvsc: ENST00000586150.1:c.509+1170C>G
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000468438
  ensembl transcript: ENST00000591107
  gene symbol: NPC1
  hgvsc: ENST00000591107.2:c.431+1170C>G
  variant of: http://identifiers.org/hgnc/7897
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6476
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4018
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2929
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5590
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6605
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2379
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6055
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4962
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3779
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7721
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3025
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2329
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1146
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: African
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum

18-21112152-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21112152
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 21112152
    reference: chr 18
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000467636
  ensembl transcript: ENST00000591051
  gene symbol: NPC1
  hgvsc: ENST00000591051.1:c.*14C>T
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000468438
  ensembl transcript: ENST00000591107
  gene symbol: NPC1
  hgvsc: ENST00000591107.2:c.431+1167C>T
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000467150
  ensembl transcript: ENST00000593280
  gene symbol: NPC1
  hgvsc: ENST00000593280.2:c.86+1167C>T
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141458
  ensembl transcript: ENST00000588867
  gene symbol: NPC1
  hgvsc: ENST00000588867.1:n.1534C>T
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000408606
  ensembl transcript: ENST00000412552
  gene symbol: NPC1
  hgvsc: ENST00000412552.2:c.*14C>T
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000269228
  ensembl transcript: ENST00000269228
  gene symbol: NPC1
  hgvsc: ENST00000269228.5:c.*14C>T
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000468321
  ensembl transcript: ENST00000586150
  gene symbol: NPC1
  hgvsc: ENST00000586150.1:c.509+1167C>T
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000464755
  ensembl transcript: ENST00000590723
  gene symbol: NPC1
  hgvsc: ENST00000590723.1:c.163+1167C>T
  variant of: http://identifiers.org/hgnc/7897
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 7721
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2931
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6605
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5590
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6055
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3025
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4962
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2379
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4018
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3779
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6476
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1863
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1292
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49355
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ

18-21112155-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21112155
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 21112155
    reference: chr 18
allele count: 3
allele frequency: 2.470925443942938e-5
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000269228
  ensembl transcript: ENST00000269228
  gene symbol: NPC1
  hgvsc: ENST00000269228.5:c.*11G>C
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141458
  ensembl transcript: ENST00000588867
  gene symbol: NPC1
  hgvsc: ENST00000588867.1:n.1531G>C
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000467636
  ensembl transcript: ENST00000591051
  gene symbol: NPC1
  hgvsc: ENST00000591051.1:c.*11G>C
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000468438
  ensembl transcript: ENST00000591107
  gene symbol: NPC1
  hgvsc: ENST00000591107.2:c.431+1164G>C
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000467150
  ensembl transcript: ENST00000593280
  gene symbol: NPC1
  hgvsc: ENST00000593280.2:c.86+1164G>C
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000464755
  ensembl transcript: ENST00000590723
  gene symbol: NPC1
  hgvsc: ENST00000590723.1:c.163+1164G>C
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000408606
  ensembl transcript: ENST00000412552
  gene symbol: NPC1
  hgvsc: ENST00000412552.2:c.*11G>C
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000468321
  ensembl transcript: ENST00000586150
  gene symbol: NPC1
  hgvsc: ENST00000586150.1:c.509+1164G>C
  variant of: http://identifiers.org/hgnc/7897
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4962
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5590
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6605
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2929
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3025
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4019
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6476
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2379
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3778
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7723
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1928
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6054
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2314
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1863
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1145
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/18-21112158-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21112158
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 21112158
    reference: chr 18
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000408606
  ensembl transcript: ENST00000412552
  gene symbol: NPC1
  hgvsc: ENST00000412552.2:c.*8G>T
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000467150
  ensembl transcript: ENST00000593280
  gene symbol: NPC1
  hgvsc: ENST00000593280.2:c.86+1161G>T
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141458
  ensembl transcript: ENST00000588867
  gene symbol: NPC1
  hgvsc: ENST00000588867.1:n.1528G>T
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000468438
  ensembl transcript: ENST00000591107
  gene symbol: NPC1
  hgvsc: ENST00000591107.2:c.431+1161G>T
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000269228
  ensembl transcript: ENST00000269228
  gene symbol: NPC1
  hgvsc: ENST00000269228.5:c.*8G>T
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000467636
  ensembl transcript: ENST00000591051
  gene symbol: NPC1
  hgvsc: ENST00000591051.1:c.*8G>T
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000468321
  ensembl transcript: ENST00000586150
  gene symbol: NPC1
  hgvsc: ENST00000586150.1:c.509+1161G>T
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000464755
  ensembl transcript: ENST00000590723
  gene symbol: NPC1
  hgvsc: ENST00000590723.1:c.163+1161G>T
  variant of: http://identifiers.org/hgnc/7897
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3026
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4962
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6476
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5590
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1928
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3778
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2379
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4019
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6605
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6054
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7722
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2929
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2329
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1863
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2321
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum

18-21112159-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21112159
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 21112159
    reference: chr 18
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000467150
  ensembl transcript: ENST00000593280
  gene symbol: NPC1
  hgvsc: ENST00000593280.2:c.86+1160C>T
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000464755
  ensembl transcript: ENST00000590723
  gene symbol: NPC1
  hgvsc: ENST00000590723.1:c.163+1160C>T
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141458
  ensembl transcript: ENST00000588867
  gene symbol: NPC1
  hgvsc: ENST00000588867.1:n.1527C>T
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000468321
  ensembl transcript: ENST00000586150
  gene symbol: NPC1
  hgvsc: ENST00000586150.1:c.509+1160C>T
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000468438
  ensembl transcript: ENST00000591107
  gene symbol: NPC1
  hgvsc: ENST00000591107.2:c.431+1160C>T
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000269228
  ensembl transcript: ENST00000269228
  gene symbol: NPC1
  hgvsc: ENST00000269228.5:c.*7C>T
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000408606
  ensembl transcript: ENST00000412552
  gene symbol: NPC1
  hgvsc: ENST00000412552.2:c.*7C>T
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000467636
  ensembl transcript: ENST00000591051
  gene symbol: NPC1
  hgvsc: ENST00000591051.1:c.*7C>T
  variant of: http://identifiers.org/hgnc/7897
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2930
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6476
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4018
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2379
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4962
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3778
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7724
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6054
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3026
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6605
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1927
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1294
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2329
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/18-21112162-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21112162
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 21112162
    reference: chr 18
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000408606
  ensembl transcript: ENST00000412552
  gene symbol: NPC1
  hgvsc: ENST00000412552.2:c.*4T>G
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000468321
  ensembl transcript: ENST00000586150
  gene symbol: NPC1
  hgvsc: ENST00000586150.1:c.509+1157T>G
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141458
  ensembl transcript: ENST00000588867
  gene symbol: NPC1
  hgvsc: ENST00000588867.1:n.1524T>G
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000467636
  ensembl transcript: ENST00000591051
  gene symbol: NPC1
  hgvsc: ENST00000591051.1:c.*4T>G
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000468438
  ensembl transcript: ENST00000591107
  gene symbol: NPC1
  hgvsc: ENST00000591107.2:c.431+1157T>G
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000269228
  ensembl transcript: ENST00000269228
  gene symbol: NPC1
  hgvsc: ENST00000269228.5:c.*4T>G
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000464755
  ensembl transcript: ENST00000590723
  gene symbol: NPC1
  hgvsc: ENST00000590723.1:c.163+1157T>G
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000467150
  ensembl transcript: ENST00000593280
  gene symbol: NPC1
  hgvsc: ENST00000593280.2:c.86+1157T>G
  variant of: http://identifiers.org/hgnc/7897
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2930
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4018
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2379
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6477
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6604
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1927
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4962
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6054
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3778
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3026
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7724
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1598
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1297
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ

18-21112164-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21112164
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 21112164
    reference: chr 18
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141458
  ensembl transcript: ENST00000588867
  gene symbol: NPC1
  hgvsc: ENST00000588867.1:n.1522C>G
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000468438
  ensembl transcript: ENST00000591107
  gene symbol: NPC1
  hgvsc: ENST00000591107.2:c.431+1155C>G
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000467150
  ensembl transcript: ENST00000593280
  gene symbol: NPC1
  hgvsc: ENST00000593280.2:c.86+1155C>G
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000467636
  ensembl transcript: ENST00000591051
  gene symbol: NPC1
  hgvsc: ENST00000591051.1:c.*2C>G
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000408606
  ensembl transcript: ENST00000412552
  gene symbol: NPC1
  hgvsc: ENST00000412552.2:c.*2C>G
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000269228
  ensembl transcript: ENST00000269228
  gene symbol: NPC1
  hgvsc: ENST00000269228.5:c.*2C>G
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000468321
  ensembl transcript: ENST00000586150
  gene symbol: NPC1
  hgvsc: ENST00000586150.1:c.509+1155C>G
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000464755
  ensembl transcript: ENST00000590723
  gene symbol: NPC1
  hgvsc: ENST00000590723.1:c.163+1155C>G
  variant of: http://identifiers.org/hgnc/7897
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6478
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2379
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6054
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4018
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3778
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4961
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2931
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1927
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7723
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6604
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3026
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1597
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1296
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1864
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum

18-21112169-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21112169
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 21112169
    reference: chr 18
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000467150
  ensembl transcript: ENST00000593280
  gene symbol: NPC1
  hgvsc: ENST00000593280.2:c.86+1150C>G
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000464755
  ensembl transcript: ENST00000590723
  gene symbol: NPC1
  hgvsc: ENST00000590723.1:c.163+1150C>G
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000467636
  ensembl transcript: ENST00000591051
  gene symbol: NPC1
  hgvsc: ENST00000591051.1:c.2912C>G
  hgvsp: ENSP00000467636.1:p.Phe971Leu
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141458
  ensembl transcript: ENST00000588867
  gene symbol: NPC1
  hgvsc: ENST00000588867.1:n.1517C>G
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000468438
  ensembl transcript: ENST00000591107
  gene symbol: NPC1
  hgvsc: ENST00000591107.2:c.431+1150C>G
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000269228
  ensembl transcript: ENST00000269228
  gene symbol: NPC1
  hgvsc: ENST00000269228.5:c.3834C>G
  hgvsp: ENSP00000269228.4:p.Phe1278Leu
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000408606
  ensembl transcript: ENST00000412552
  gene symbol: NPC1
  hgvsc: ENST00000412552.2:c.2880C>G
  hgvsp: ENSP00000408606.2:p.Phe960Leu
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000468321
  ensembl transcript: ENST00000586150
  gene symbol: NPC1
  hgvsc: ENST00000586150.1:c.509+1150C>G
  variant of: http://identifiers.org/hgnc/7897
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6478
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6054
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3778
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3026
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2379
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4018
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4961
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5592
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6604
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7724
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2929
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1144
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2326
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Phe1278Leu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ

18-21112170-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21112170
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 21112170
    reference: chr 18
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000468438
  ensembl transcript: ENST00000591107
  gene symbol: NPC1
  hgvsc: ENST00000591107.2:c.431+1149T>C
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000408606
  ensembl transcript: ENST00000412552
  gene symbol: NPC1
  hgvsc: ENST00000412552.2:c.2879T>C
  hgvsp: ENSP00000408606.2:p.Phe960Ser
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141458
  ensembl transcript: ENST00000588867
  gene symbol: NPC1
  hgvsc: ENST00000588867.1:n.1516T>C
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000464755
  ensembl transcript: ENST00000590723
  gene symbol: NPC1
  hgvsc: ENST00000590723.1:c.163+1149T>C
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000467636
  ensembl transcript: ENST00000591051
  gene symbol: NPC1
  hgvsc: ENST00000591051.1:c.2911T>C
  hgvsp: ENSP00000467636.1:p.Phe971Ser
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000269228
  ensembl transcript: ENST00000269228
  gene symbol: NPC1
  hgvsc: ENST00000269228.5:c.3833T>C
  hgvsp: ENSP00000269228.4:p.Phe1278Ser
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000468321
  ensembl transcript: ENST00000586150
  gene symbol: NPC1
  hgvsc: ENST00000586150.1:c.509+1149T>C
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000467150
  ensembl transcript: ENST00000593280
  gene symbol: NPC1
  hgvsc: ENST00000593280.2:c.86+1149T>C
  variant of: http://identifiers.org/hgnc/7897
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2929
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5592
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6054
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4961
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3026
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7724
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4018
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6479
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1833
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3778
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6604
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1861
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1299
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Phe1278Ser
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

15-79092787-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79092787
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79092787
    reference: chr 15
allele count: 6
allele frequency: 6.649378283130527e-5
allele num: 90234
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000568712
  gene symbol: ADAMTS7
  hgvsc: ENST00000568712.1:n.215G>C
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000565793
  gene symbol: ADAMTS7
  hgvsc: ENST00000565793.1:n.100G>C
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136378
  ensembl protein: ENSP00000373472
  ensembl transcript: ENST00000388820
  gene symbol: ADAMTS7
  hgvsc: ENST00000388820.4:c.203G>C
  hgvsp: ENSP00000373472.4:p.Arg68Pro
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000566303
  gene symbol: ADAMTS7
  hgvsc: ENST00000566303.1:n.266G>C
  variant of: http://identifiers.org/hgnc/223
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12860
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4983
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7643
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2208
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9783
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17403
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4019
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 17443
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1943
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2547
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 833
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2027
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2805
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1490
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2189
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19636
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg68Pro
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

15-79092793-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79092793
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79092793
    reference: chr 15
allele count: 1
allele frequency: 1.115523626790415e-5
allele num: 89644
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000565793
  gene symbol: ADAMTS7
  hgvsc: ENST00000565793.1:n.94C>T
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000566303
  gene symbol: ADAMTS7
  hgvsc: ENST00000566303.1:n.260C>T
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136378
  ensembl protein: ENSP00000373472
  ensembl transcript: ENST00000388820
  gene symbol: ADAMTS7
  hgvsc: ENST00000388820.4:c.197C>T
  hgvsp: ENSP00000373472.4:p.Ala66Val
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000568712
  gene symbol: ADAMTS7
  hgvsc: ENST00000568712.1:n.209C>T
  variant of: http://identifiers.org/hgnc/223
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17704
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4522
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9760
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7489
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13301
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2666
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 756
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18152
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1813
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2424
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4019
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1302
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1344
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2159
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala66Val
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

15-79092794-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79092794
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79092794
    reference: chr 15
allele count: 2
allele frequency: 2.247342517473088e-5
allele num: 88994
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000568712
  gene symbol: ADAMTS7
  hgvsc: ENST00000568712.1:n.208G>A
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136378
  ensembl protein: ENSP00000373472
  ensembl transcript: ENST00000388820
  gene symbol: ADAMTS7
  hgvsc: ENST00000388820.4:c.196G>A
  hgvsp: ENSP00000373472.4:p.Ala66Thr
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000565793
  gene symbol: ADAMTS7
  hgvsc: ENST00000565793.1:n.93G>A
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000566303
  gene symbol: ADAMTS7
  hgvsc: ENST00000566303.1:n.259G>A
  variant of: http://identifiers.org/hgnc/223
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13412
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9803
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17404
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7463
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4633
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1828
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1390
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2441
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2670
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1097
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4020
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2213
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18145
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1906
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala66Thr
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

15-79092797-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79092797
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79092797
    reference: chr 15
allele count: 1
allele frequency: 1.12943302462164e-5
allele num: 88540
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000568712
  gene symbol: ADAMTS7
  hgvsc: ENST00000568712.1:n.205C>T
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000566303
  gene symbol: ADAMTS7
  hgvsc: ENST00000566303.1:n.256C>T
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136378
  ensembl protein: ENSP00000373472
  ensembl transcript: ENST00000388820
  gene symbol: ADAMTS7
  hgvsc: ENST00000388820.4:c.193C>T
  hgvsp: ENSP00000373472.4:p.Arg65Cys
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000565793
  gene symbol: ADAMTS7
  hgvsc: ENST00000565793.1:n.90C>T
  variant of: http://identifiers.org/hgnc/223
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7440
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9732
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17714
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13723
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1134
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21023
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 1230
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1654
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2335
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2487
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4019
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1894
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2210
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg65Cys
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

15-79092798-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79092798
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79092798
    reference: chr 15
allele count: 5
allele frequency: 5.651761088755256e-5
allele num: 88468
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136378
  ensembl protein: ENSP00000373472
  ensembl transcript: ENST00000388820
  gene symbol: ADAMTS7
  hgvsc: ENST00000388820.4:c.192C>T
  hgvsp: ENST00000388820.4:c.192C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000565793
  gene symbol: ADAMTS7
  hgvsc: ENST00000565793.1:n.89C>T
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000566303
  gene symbol: ADAMTS7
  hgvsc: ENST00000566303.1:n.255C>T
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000568712
  gene symbol: ADAMTS7
  hgvsc: ENST00000568712.1:n.204C>T
  variant of: http://identifiers.org/hgnc/223
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13875
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9764
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2174
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17692
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7419
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2194
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2455
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1195
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18979
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21078
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1144
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4024
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1618
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1903
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro64Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

15-79092800-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79092800
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79092800
    reference: chr 15
allele count: 2
allele frequency: 2.289586958512684e-5
allele num: 87352
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136378
  ensembl protein: ENSP00000373472
  ensembl transcript: ENST00000388820
  gene symbol: ADAMTS7
  hgvsc: ENST00000388820.4:c.190C>T
  hgvsp: ENSP00000373472.4:p.Pro64Ser
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000565793
  gene symbol: ADAMTS7
  hgvsc: ENST00000565793.1:n.87C>T
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000566303
  gene symbol: ADAMTS7
  hgvsc: ENST00000566303.1:n.253C>T
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000568712
  gene symbol: ADAMTS7
  hgvsc: ENST00000568712.1:n.202C>T
  variant of: http://identifiers.org/hgnc/223
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2230
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9995
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7225
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17059
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14251
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4278
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2478
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 707
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2248
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 756
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1654
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2362
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1616
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1279
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19381
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1237
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4020
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro64Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/15-79092801-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79092801
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79092801
    reference: chr 15
allele count: 1
allele frequency: 1.14322297420889e-5
allele num: 87472
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000568712
  gene symbol: ADAMTS7
  hgvsc: ENST00000568712.1:n.201G>T
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136378
  ensembl protein: ENSP00000373472
  ensembl transcript: ENST00000388820
  gene symbol: ADAMTS7
  hgvsc: ENST00000388820.4:c.189G>T
  hgvsp: ENSP00000373472.4:p.Trp63Cys
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000565793
  gene symbol: ADAMTS7
  hgvsc: ENST00000565793.1:n.86G>T
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000566303
  gene symbol: ADAMTS7
  hgvsc: ENST00000566303.1:n.252G>T
  variant of: http://identifiers.org/hgnc/223
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14325
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9962
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4138
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2230
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17233
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7191
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1594
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 855
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2455
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2241
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 678
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4018
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2340
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1520
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1237
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19560
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Trp63Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum

15-79092802-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79092802
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79092802
    reference: chr 15
allele count: 1
allele frequency: 1.145632847585006e-5
allele num: 87288
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000565793
  gene symbol: ADAMTS7
  hgvsc: ENST00000565793.1:n.85G>C
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000566303
  gene symbol: ADAMTS7
  hgvsc: ENST00000566303.1:n.251G>C
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000568712
  gene symbol: ADAMTS7
  hgvsc: ENST00000568712.1:n.200G>C
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136378
  ensembl protein: ENSP00000373472
  ensembl transcript: ENST00000388820
  gene symbol: ADAMTS7
  hgvsc: ENST00000388820.4:c.188G>C
  hgvsp: ENSP00000373472.4:p.Trp63Ser
  variant of: http://identifiers.org/hgnc/223
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14437
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4073
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17228
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2232
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9953
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7169
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2252
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1809
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 2315
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
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genotype quality: GenotypeQuality
  all individuals: 125
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genotype quality: GenotypeQuality
  all individuals: 376
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19802
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1443
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 19712
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genotype quality: GenotypeQuality
  all individuals: 2421
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genotype quality: GenotypeQuality
  all individuals: 644
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1213
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Trp63Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD

18-21112173-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21112173
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 21112173
    reference: chr 18
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000468321
  ensembl transcript: ENST00000586150
  gene symbol: NPC1
  hgvsc: ENST00000586150.1:c.509+1146A>G
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000468438
  ensembl transcript: ENST00000591107
  gene symbol: NPC1
  hgvsc: ENST00000591107.2:c.431+1146A>G
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000467150
  ensembl transcript: ENST00000593280
  gene symbol: NPC1
  hgvsc: ENST00000593280.2:c.86+1146A>G
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000467636
  ensembl transcript: ENST00000591051
  gene symbol: NPC1
  hgvsc: ENST00000591051.1:c.2908A>G
  hgvsp: ENSP00000467636.1:p.Asn970Ser
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141458
  ensembl transcript: ENST00000588867
  gene symbol: NPC1
  hgvsc: ENST00000588867.1:n.1513A>G
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000269228
  ensembl transcript: ENST00000269228
  gene symbol: NPC1
  hgvsc: ENST00000269228.5:c.3830A>G
  hgvsp: ENSP00000269228.4:p.Asn1277Ser
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000408606
  ensembl transcript: ENST00000412552
  gene symbol: NPC1
  hgvsc: ENST00000412552.2:c.2876A>G
  hgvsp: ENSP00000408606.2:p.Asn959Ser
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000464755
  ensembl transcript: ENST00000590723
  gene symbol: NPC1
  hgvsc: ENST00000590723.1:c.163+1146A>G
  variant of: http://identifiers.org/hgnc/7897
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3778
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5592
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4961
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7723
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3027
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6604
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2928
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4019
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6053
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6479
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2329
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1861
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asn1277Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

18-21112175-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21112175
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 21112175
    reference: chr 18
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000269228
  ensembl transcript: ENST00000269228
  gene symbol: NPC1
  hgvsc: ENST00000269228.5:c.3828A>G
  hgvsp: ENST00000269228.5:c.3828A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000464755
  ensembl transcript: ENST00000590723
  gene symbol: NPC1
  hgvsc: ENST00000590723.1:c.163+1144A>G
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141458
  ensembl transcript: ENST00000588867
  gene symbol: NPC1
  hgvsc: ENST00000588867.1:n.1511A>G
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000467150
  ensembl transcript: ENST00000593280
  gene symbol: NPC1
  hgvsc: ENST00000593280.2:c.86+1144A>G
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000408606
  ensembl transcript: ENST00000412552
  gene symbol: NPC1
  hgvsc: ENST00000412552.2:c.2874A>G
  hgvsp: ENST00000412552.2:c.2874A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000467636
  ensembl transcript: ENST00000591051
  gene symbol: NPC1
  hgvsc: ENST00000591051.1:c.2906A>G
  hgvsp: ENST00000591051.1:c.2906A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000468321
  ensembl transcript: ENST00000586150
  gene symbol: NPC1
  hgvsc: ENST00000586150.1:c.509+1144A>G
  variant of: http://identifiers.org/hgnc/7897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141458
  ensembl protein: ENSP00000468438
  ensembl transcript: ENST00000591107
  gene symbol: NPC1
  hgvsc: ENST00000591107.2:c.431+1144A>G
  variant of: http://identifiers.org/hgnc/7897
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4962
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3027
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6479
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3778
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2928
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5592
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6604
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4020
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7722
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6053
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1861
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu1276Leu
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

15-79092803-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79092803
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79092803
    reference: chr 15
allele count: 2
allele frequency: 2.292526364053187e-5
allele num: 87240
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000566303
  gene symbol: ADAMTS7
  hgvsc: ENST00000566303.1:n.250T>C
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000565793
  gene symbol: ADAMTS7
  hgvsc: ENST00000565793.1:n.84T>C
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000568712
  gene symbol: ADAMTS7
  hgvsc: ENST00000568712.1:n.199T>C
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136378
  ensembl protein: ENSP00000373472
  ensembl transcript: ENST00000388820
  gene symbol: ADAMTS7
  hgvsc: ENST00000388820.4:c.187T>C
  hgvsp: ENSP00000373472.4:p.Trp63Arg
  variant of: http://identifiers.org/hgnc/223
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17380
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3935
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9920
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2213
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14536
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7118
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2374
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2231
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20368
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2286
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4018
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1317
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1134
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19859
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1806
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Trp63Arg
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP

15-79092809-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79092809
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79092809
    reference: chr 15
allele count: 2
allele frequency: 2.330404791312251e-5
allele num: 85822
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000568712
  gene symbol: ADAMTS7
  hgvsc: ENST00000568712.1:n.193G>A
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000566303
  gene symbol: ADAMTS7
  hgvsc: ENST00000566303.1:n.244G>A
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136378
  ensembl protein: ENSP00000373472
  ensembl transcript: ENST00000388820
  gene symbol: ADAMTS7
  hgvsc: ENST00000388820.4:c.181G>A
  hgvsp: ENSP00000373472.4:p.Glu61Lys
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000565793
  gene symbol: ADAMTS7
  hgvsc: ENST00000565793.1:n.78G>A
  variant of: http://identifiers.org/hgnc/223
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2264
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17216
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15071
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6819
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10120
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3635
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2310
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1721
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1146
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2261
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4017
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2223
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20641
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20189
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu61Lys
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

15-79092812-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79092812
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79092812
    reference: chr 15
allele count: 1
allele frequency: 1.188325886491111e-5
allele num: 84152
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000565793
  gene symbol: ADAMTS7
  hgvsc: ENST00000565793.1:n.75T>A
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000566303
  gene symbol: ADAMTS7
  hgvsc: ENST00000566303.1:n.241T>A
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136378
  ensembl protein: ENSP00000373472
  ensembl transcript: ENST00000388820
  gene symbol: ADAMTS7
  hgvsc: ENST00000388820.4:c.178T>A
  hgvsp: ENSP00000373472.4:p.Tyr60Asn
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000568712
  gene symbol: ADAMTS7
  hgvsc: ENST00000568712.1:n.190T>A
  variant of: http://identifiers.org/hgnc/223
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15852
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10588
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6578
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16153
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3613
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2226
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4019
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1287
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2372
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21583
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1400
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2298
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1610
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1442
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 955
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Tyr60Asn
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

15-79092818-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79092818
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79092818
    reference: chr 15
allele count: 1
allele frequency: 1.203137783338948e-5
allele num: 83116
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000565793
  gene symbol: ADAMTS7
  hgvsc: ENST00000565793.1:n.69C>T
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136378
  ensembl protein: ENSP00000373472
  ensembl transcript: ENST00000388820
  gene symbol: ADAMTS7
  hgvsc: ENST00000388820.4:c.172C>T
  hgvsp: ENST00000388820.4:c.172C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000566303
  gene symbol: ADAMTS7
  hgvsc: ENST00000566303.1:n.235C>T
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000568712
  gene symbol: ADAMTS7
  hgvsc: ENST00000568712.1:n.184C>T
  variant of: http://identifiers.org/hgnc/223
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16194
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10638
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16339
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3145
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6435
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1270
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4019
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2133
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 725
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2138
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1549
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2455
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu58Leu
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP

15-79092822-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79092822
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79092822
    reference: chr 15
allele count: 3
allele frequency: 3.711952487008166e-5
allele num: 80820
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000568712
  gene symbol: ADAMTS7
  hgvsc: ENST00000568712.1:n.180C>T
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000566303
  gene symbol: ADAMTS7
  hgvsc: ENST00000566303.1:n.231C>T
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000565793
  gene symbol: ADAMTS7
  hgvsc: ENST00000565793.1:n.65C>T
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136378
  ensembl protein: ENSP00000373472
  ensembl transcript: ENST00000388820
  gene symbol: ADAMTS7
  hgvsc: ENST00000388820.4:c.168C>T
  hgvsp: ENST00000388820.4:c.168C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/223
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17288
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14293
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3370
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6097
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11548
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2250
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2659
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 831
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1382
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23898
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 957
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2293
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1476
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser56Ser
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff

15-79092823-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79092823
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79092823
    reference: chr 15
allele count: 1
allele frequency: 1.237286877335379e-5
allele num: 80822
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000565793
  gene symbol: ADAMTS7
  hgvsc: ENST00000565793.1:n.64C>T
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136378
  ensembl protein: ENSP00000373472
  ensembl transcript: ENST00000388820
  gene symbol: ADAMTS7
  hgvsc: ENST00000388820.4:c.167C>T
  hgvsp: ENSP00000373472.4:p.Ser56Phe
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000566303
  gene symbol: ADAMTS7
  hgvsc: ENST00000566303.1:n.230C>T
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000568712
  gene symbol: ADAMTS7
  hgvsc: ENST00000568712.1:n.179C>T
  variant of: http://identifiers.org/hgnc/223
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6113
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17326
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14324
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3298
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11544
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2579
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17370
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4019
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 792
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24042
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2229
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2649
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2285
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1361
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser56Phe
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff

15-79092825-G-GC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79092825
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79092826
    reference: chr 15
allele count: 1
allele frequency: 1.262020747621091e-5
allele num: 79238
alternate allele: GC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000566303
  gene symbol: ADAMTS7
  hgvsc: ENST00000566303.1:n.227dupG
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000568712
  gene symbol: ADAMTS7
  hgvsc: ENST00000568712.1:n.176dupG
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000136378
  ensembl protein: ENSP00000373472
  ensembl transcript: ENST00000388820
  gene symbol: ADAMTS7
  hgvsc: ENST00000388820.4:c.164dupG
  hgvsp: ENSP00000373472.4:p.Ser56LeufsTer83
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000565793
  gene symbol: ADAMTS7
  hgvsc: ENST00000565793.1:n.61dupG
  variant of: http://identifiers.org/hgnc/223
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 2634
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3492
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13475
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17744
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11909
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5890
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1404
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2767
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 883
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2296
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2323
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 999
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 875
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24452
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15918
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4018
  bin: 9.75e1
  variant carriers: 0
hgvs: p.Ser56LeufsTer83
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD

15-79092826-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79092826
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79092826
    reference: chr 15
allele count: 1
allele frequency: 1.281033025031385e-5
allele num: 78062
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136378
  ensembl protein: ENSP00000373472
  ensembl transcript: ENST00000388820
  gene symbol: ADAMTS7
  hgvsc: ENST00000388820.4:c.164G>A
  hgvsp: ENSP00000373472.4:p.Gly55Asp
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000566303
  gene symbol: ADAMTS7
  hgvsc: ENST00000566303.1:n.227G>A
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000565793
  gene symbol: ADAMTS7
  hgvsc: ENST00000565793.1:n.61G>A
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000568712
  gene symbol: ADAMTS7
  hgvsc: ENST00000568712.1:n.176G>A
  variant of: http://identifiers.org/hgnc/223
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18126
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12180
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3606
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2735
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12782
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5711
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2360
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24792
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14429
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1340
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1092
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1431
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4019
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2336
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 901
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2879
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 963
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly55Asp
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

15-79092828-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79092828
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79092828
    reference: chr 15
allele count: 1
allele frequency: 1.282741989276277e-5
allele num: 77958
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000568712
  gene symbol: ADAMTS7
  hgvsc: ENST00000568712.1:n.174G>C
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000566303
  gene symbol: ADAMTS7
  hgvsc: ENST00000566303.1:n.225G>C
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136378
  ensembl protein: ENSP00000373472
  ensembl transcript: ENST00000388820
  gene symbol: ADAMTS7
  hgvsc: ENST00000388820.4:c.162G>C
  hgvsp: ENST00000388820.4:c.162G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000565793
  gene symbol: ADAMTS7
  hgvsc: ENST00000565793.1:n.59G>C
  variant of: http://identifiers.org/hgnc/223
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18423
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2791
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5637
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12258
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3420
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12696
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 895
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1346
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4019
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2890
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1007
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25474
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2269
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2343
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15083
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1373
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly54Gly
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/15-79092829-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79092829
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79092829
    reference: chr 15
allele count: 13
allele frequency: 1.679065922711304e-4
allele num: 77424
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000565793
  gene symbol: ADAMTS7
  hgvsc: ENST00000565793.1:n.58G>T
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000566303
  gene symbol: ADAMTS7
  hgvsc: ENST00000566303.1:n.224G>T
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136378
  ensembl protein: ENSP00000373472
  ensembl transcript: ENST00000388820
  gene symbol: ADAMTS7
  hgvsc: ENST00000388820.4:c.161G>T
  hgvsp: ENSP00000373472.4:p.Gly54Val
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000568712
  gene symbol: ADAMTS7
  hgvsc: ENST00000568712.1:n.173G>T
  variant of: http://identifiers.org/hgnc/223
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3426
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 18690
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12379
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12410
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5486
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1389
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2378
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1340
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 929
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25796
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4029
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 2289
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1059
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14435
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly54Val
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ

15-79092842-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79092842
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79092842
    reference: chr 15
allele count: 1
allele frequency: 1.409522735601725e-5
allele num: 70946
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000136378
  ensembl protein: ENSP00000373472
  ensembl transcript: ENST00000388820
  gene symbol: ADAMTS7
  hgvsc: ENST00000388820.4:c.148C>T
  hgvsp: ENSP00000373472.4:p.Arg50Ter
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000566303
  gene symbol: ADAMTS7
  hgvsc: ENST00000566303.1:n.211C>T
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000565793
  gene symbol: ADAMTS7
  hgvsc: ENST00000565793.1:n.45C>T
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000568712
  gene symbol: ADAMTS7
  hgvsc: ENST00000568712.1:n.160C>T
  variant of: http://identifiers.org/hgnc/223
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21183
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10420
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3358
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3006
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13385
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3979
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 964
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11956
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 679
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3469
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2123
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1198
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 765
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29263
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 962
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg50Ter
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/15-79092846-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79092846
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79092846
    reference: chr 15
allele count: 4
allele frequency: 5.774338838203026e-5
allele num: 69272
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000566303
  gene symbol: ADAMTS7
  hgvsc: ENST00000566303.1:n.207G>T
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000568712
  gene symbol: ADAMTS7
  hgvsc: ENST00000568712.1:n.156G>T
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000565793
  gene symbol: ADAMTS7
  hgvsc: ENST00000565793.1:n.41G>T
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136378
  ensembl protein: ENSP00000373472
  ensembl transcript: ENST00000388820
  gene symbol: ADAMTS7
  hgvsc: ENST00000388820.4:c.144G>T
  hgvsp: ENST00000388820.4:c.144G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/223
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13625
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3547
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3626
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2809
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9892
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21860
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30240
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 934
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3659
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4019
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 11375
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2285
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1141
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 938
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro48Pro
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

15-79092855-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79092855
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79092855
    reference: chr 15
allele count: 7
allele frequency: 1.097247476330804e-4
allele num: 63796
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000566303
  gene symbol: ADAMTS7
  hgvsc: ENST00000566303.1:n.198C>G
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136378
  ensembl protein: ENSP00000373472
  ensembl transcript: ENST00000388820
  gene symbol: ADAMTS7
  hgvsc: ENST00000388820.4:c.135C>G
  hgvsp: ENSP00000373472.4:p.Ile45Met
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000565793
  gene symbol: ADAMTS7
  hgvsc: ENST00000565793.1:n.32C>G
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000568712
  gene symbol: ADAMTS7
  hgvsc: ENST00000568712.1:n.147C>G
  variant of: http://identifiers.org/hgnc/223
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14806
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6852
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4487
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3117
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23641
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4023
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1929
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32945
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2260
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1209
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8140
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4611
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ile45Met
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

15-79092863-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79092863
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79092863
    reference: chr 15
allele count: 4
allele frequency: 6.833635152219223e-5
allele num: 58534
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136378
  ensembl protein: ENSP00000373472
  ensembl transcript: ENST00000388820
  gene symbol: ADAMTS7
  hgvsc: ENST00000388820.4:c.127C>A
  hgvsp: ENSP00000373472.4:p.Leu43Met
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000566303
  gene symbol: ADAMTS7
  hgvsc: ENST00000566303.1:n.190C>A
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000565793
  gene symbol: ADAMTS7
  hgvsc: ENST00000565793.1:n.24C>A
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000568712
  gene symbol: ADAMTS7
  hgvsc: ENST00000568712.1:n.139C>A
  variant of: http://identifiers.org/hgnc/223
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2344
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24955
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15495
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4475
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5804
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34171
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1815
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2178
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 622
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1895
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5920
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4020
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu43Met
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: G
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum

15-79092864-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79092864
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79092864
    reference: chr 15
allele count: 1
allele frequency: 1.710454296661193e-5
allele num: 58464
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000565793
  gene symbol: ADAMTS7
  hgvsc: ENST00000565793.1:n.23A>G
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000566303
  gene symbol: ADAMTS7
  hgvsc: ENST00000566303.1:n.189A>G
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136378
  ensembl protein: ENSP00000373472
  ensembl transcript: ENST00000388820
  gene symbol: ADAMTS7
  hgvsc: ENST00000388820.4:c.126A>G
  hgvsp: ENST00000388820.4:c.126A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000568712
  gene symbol: ADAMTS7
  hgvsc: ENST00000568712.1:n.138A>G
  variant of: http://identifiers.org/hgnc/223
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2282
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25029
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5805
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15480
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34370
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4018
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2163
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1064
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1871
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1658
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5499
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5921
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala42Ala
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff

15-79092868-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79092868
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79092868
    reference: chr 15
allele count: 11
allele frequency: 2.003569997450002e-4
allele num: 54902
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000568712
  gene symbol: ADAMTS7
  hgvsc: ENST00000568712.1:n.134C>A
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000565793
  gene symbol: ADAMTS7
  hgvsc: ENST00000565793.1:n.19C>A
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136378
  ensembl protein: ENSP00000373472
  ensembl transcript: ENST00000388820
  gene symbol: ADAMTS7
  hgvsc: ENST00000388820.4:c.122C>A
  hgvsp: ENSP00000373472.4:p.Ala41Glu
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000566303
  gene symbol: ADAMTS7
  hgvsc: ENST00000566303.1:n.185C>A
  variant of: http://identifiers.org/hgnc/223
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6436
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25649
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15404
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3869
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 859
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 941
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1989
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6632
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34933
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1601
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4029
  bin: 9.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 4760
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala41Glu
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

15-79092872-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79092872
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79092872
    reference: chr 15
allele count: 5
allele frequency: 9.589934404848671e-5
allele num: 52138
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136378
  ensembl protein: ENSP00000373472
  ensembl transcript: ENST00000388820
  gene symbol: ADAMTS7
  hgvsc: ENST00000388820.4:c.118C>T
  hgvsp: ENSP00000373472.4:p.Arg40Trp
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000565793
  gene symbol: ADAMTS7
  hgvsc: ENST00000565793.1:n.15C>T
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000568712
  gene symbol: ADAMTS7
  hgvsc: ENST00000568712.1:n.130C>T
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000566303
  gene symbol: ADAMTS7
  hgvsc: ENST00000566303.1:n.181C>T
  variant of: http://identifiers.org/hgnc/223
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3163
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15202
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26148
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7615
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7788
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1476
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4022
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1726
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1906
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3847
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35323
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 942
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg40Trp
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

15-79092874-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79092874
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79092874
    reference: chr 15
allele count: 22
allele frequency: 4.353159998417033e-4
allele num: 50538
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000568712
  gene symbol: ADAMTS7
  hgvsc: ENST00000568712.1:n.128G>A
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000565793
  gene symbol: ADAMTS7
  hgvsc: ENST00000565793.1:n.13G>A
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000566303
  gene symbol: ADAMTS7
  hgvsc: ENST00000566303.1:n.179G>A
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136378
  ensembl protein: ENSP00000373472
  ensembl transcript: ENST00000388820
  gene symbol: ADAMTS7
  hgvsc: ENST00000388820.4:c.116G>A
  hgvsp: ENSP00000373472.4:p.Gly39Asp
  variant of: http://identifiers.org/hgnc/223
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8273
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14960
  bin: 1.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 2846
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26315
  bin: 7.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8428
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 35021
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 990
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1985
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3312
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1836
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4041
  bin: 9.75e1
  variant carriers: 22
hgvs: p.Gly39Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

15-79092896-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79092896
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79092896
    reference: chr 15
allele count: 1
allele frequency: 2.742430890741553e-5
allele num: 36464
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000568712
  gene symbol: ADAMTS7
  hgvsc: ENST00000568712.1:n.113-7C>T
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000566303
  gene symbol: ADAMTS7
  hgvsc: ENST00000566303.1:n.164-7C>T
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136378
  ensembl protein: ENSP00000373472
  ensembl transcript: ENST00000388820
  gene symbol: ADAMTS7
  hgvsc: ENST00000388820.4:c.101-7C>T
  variant of: http://identifiers.org/hgnc/223
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10831
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29456
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1561
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1722
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4020
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17200
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1136
  bin: 2.75e1
  variant carriers: 0
hgvs: c.101-7C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/15-79092932-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79092932
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79092932
    reference: chr 15
allele count: 417
allele frequency: 2.399861878453039e-2
allele num: 17376
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000566303
  gene symbol: ADAMTS7
  hgvsc: ENST00000566303.1:n.164-43G>T
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000568712
  gene symbol: ADAMTS7
  hgvsc: ENST00000568712.1:n.113-43G>T
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136378
  ensembl protein: ENSP00000373472
  ensembl transcript: ENST00000388820
  gene symbol: ADAMTS7
  hgvsc: ENST00000388820.4:c.101-43G>T
  variant of: http://identifiers.org/hgnc/223
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 9.75e1
  variant carriers: 174
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28756
  bin: 2.5e0
  variant carriers: 166
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 1.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 2.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 682
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 149
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 3.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 408
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 18
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 4372
  bin: 9.75e1
  variant carriers: 453
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 189
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 27017
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 3821
  bin: 1.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 141
  bin: 4.75e1
  variant carriers: 44
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 6.75e1
  variant carriers: 16
num of homozygotes: 14
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

15-79092932-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79092932
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79092932
    reference: chr 15
allele count: 2
allele frequency: 1.151012891344383e-4
allele num: 17376
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136378
  ensembl protein: ENSP00000373472
  ensembl transcript: ENST00000388820
  gene symbol: ADAMTS7
  hgvsc: ENST00000388820.4:c.101-43G>C
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000566303
  gene symbol: ADAMTS7
  hgvsc: ENST00000566303.1:n.164-43G>C
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000568712
  gene symbol: ADAMTS7
  hgvsc: ENST00000568712.1:n.113-43G>C
  variant of: http://identifiers.org/hgnc/223
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28756
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 5935
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 233
  bin: 7.75e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

15-79092932-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79092932
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79092932
    reference: chr 15
allele count: 4
allele frequency: 2.302025782688766e-4
allele num: 17376
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000568712
  gene symbol: ADAMTS7
  hgvsc: ENST00000568712.1:n.113-43G>A
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136378
  ensembl protein: ENSP00000373472
  ensembl transcript: ENST00000388820
  gene symbol: ADAMTS7
  hgvsc: ENST00000388820.4:c.101-43G>A
  variant of: http://identifiers.org/hgnc/223
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136378
  ensembl transcript: ENST00000566303
  gene symbol: ADAMTS7
  hgvsc: ENST00000566303.1:n.164-43G>A
  variant of: http://identifiers.org/hgnc/223
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28756
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18175
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 891
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
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genotype quality: GenotypeQuality
  all individuals: 408
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 264
  bin: 8.25e1
  variant carriers: 2
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD

15-79132996-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79132996
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79132996
    reference: chr 15
allele count: 1
allele frequency: 9.297136481963555e-5
allele num: 10756
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000368850
  ensembl transcript: ENST00000379535
  gene symbol: MORF4L1
  hgvsc: ENST00000379535.4:c.94A>G
  hgvsp: ENSP00000368850.4:p.Ser32Gly
  variant of: http://identifiers.org/hgnc/16989
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2719
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 787
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3589
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2464
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser32Gly
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2720
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 188
  num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: East Asian
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/15-79133016-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79133016
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79133016
    reference: chr 15
allele count: 4
allele frequency: 3.719546215361726e-4
allele num: 10754
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000368850
  ensembl transcript: ENST00000379535
  gene symbol: MORF4L1
  hgvsc: ENST00000379535.4:c.114A>C
  hgvsp: ENSP00000368850.4:p.Gln38His
  variant of: http://identifiers.org/hgnc/16989
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3190
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2888
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2640
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 3474
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 9.75e1
  variant carriers: 4
hgvs: p.Gln38His
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 4
  allele frequency: 5.336179295624333e-4
  allele num: 7496
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 192
  num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

15-79133026-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79133026
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79133026
    reference: chr 15
allele count: 5091
allele frequency: 4.729654403567447e-1
allele num: 10764
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000368850
  ensembl transcript: ENST00000379535
  gene symbol: MORF4L1
  hgvsc: ENST00000379535.4:c.115+9C>T
  variant of: http://identifiers.org/hgnc/16989
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 3.75e1
  variant carriers: 617
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 2.75e1
  variant carriers: 317
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 2171
  bin: 2.5e0
  variant carriers: 313
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 4.75e1
  variant carriers: 583
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 127
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 2.25e1
  variant carriers: 141
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.75e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 7.5e0
  variant carriers: 228
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 3.25e1
  variant carriers: 473
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 4.25e1
  variant carriers: 675
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.25e1
  variant carriers: 418
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 5.75e1
  variant carriers: 266
genotype quality: GenotypeQuality
  all individuals: 3625
  bin: 9.75e1
  variant carriers: 3623
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 7.75e1
  variant carriers: 41
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 1.75e1
  variant carriers: 87
genotype quality: GenotypeQuality
  all individuals: 1497
  bin: 7.5e0
  variant carriers: 166
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 8.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 2.25e1
  variant carriers: 43
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.75e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 9.25e1
  variant carriers: 59
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 631
  bin: 2.5e0
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 8.25e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 1.25e1
  variant carriers: 93
genotype quality: GenotypeQuality
  all individuals: 1251
  bin: 6.25e1
  variant carriers: 46
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 7.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 6.75e1
  variant carriers: 23
num of homozygotes: 1252
population: East Asian
  type: Population
  allele count: 76
  allele frequency: 5.588235294117647e-1
  allele num: 136
  num of homozygotes: 19
population: European (Finnish)
  type: Population
  allele count: 4
  allele frequency: 6.666666666666666e-1
  allele num: 6
  num of homozygotes: 1
population: European (Non-Finnish)
  type: Population
  allele count: 1029
  allele frequency: 3.774761555392516e-1
  allele num: 2726
  num of homozygotes: 193
population: Other
population: African
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

15-79133038-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79133038
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79133038
    reference: chr 15
allele count: 123
allele frequency: 1.164111300397501e-2
allele num: 10566
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000368850
  ensembl transcript: ENST00000379535
  gene symbol: MORF4L1
  hgvsc: ENST00000379535.4:c.115+21C>T
  variant of: http://identifiers.org/hgnc/16989
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3369
  bin: 2.5e0
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 3.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 3.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 2.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.5e0
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 1.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 1.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2821
  bin: 7.5e0
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 2.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 203
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 251
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  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2868
  bin: 6.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 9.75e1
  variant carriers: 113
num of homozygotes: 7
population: European (Non-Finnish)
  type: Population
  allele count: 5
  allele frequency: 1.882530120481928e-3
  allele num: 2656
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 5
  allele frequency: 5.434782608695652e-2
  allele num: 92
  num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

15-79165322-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79165322
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79165322
    reference: chr 15
allele count: 1
allele frequency: 5.08440105755542e-5
allele num: 19668
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000557961
  gene symbol: MORF4L1
  hgvsc: ENST00000557961.1:n.165G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000454191
  ensembl transcript: ENST00000559930
  gene symbol: MORF4L1
  hgvsc: ENST00000559930.1:c.-363G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000368850
  ensembl transcript: ENST00000379535
  gene symbol: MORF4L1
  hgvsc: ENST00000379535.4:c.116-5233G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453738
  ensembl transcript: ENST00000558830
  gene symbol: MORF4L1
  hgvsc: ENST00000558830.1:c.-255G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453231
  ensembl transcript: ENST00000558746
  gene symbol: MORF4L1
  hgvsc: ENST00000558746.1:c.-38G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559697
  gene symbol: MORF4L1
  hgvsc: ENST00000559697.1:n.416-5233G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000331310
  ensembl transcript: ENST00000331268
  gene symbol: MORF4L1
  hgvsc: ENST00000331268.5:c.-38G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000558893
  gene symbol: MORF4L1
  hgvsc: ENST00000558893.1:n.8G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000408880
  ensembl transcript: ENST00000426013
  gene symbol: MORF4L1
  hgvsc: ENST00000426013.2:c.-38G>A
  variant of: http://identifiers.org/hgnc/16989
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2107
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
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genotype depth: GenotypeDepth
  all individuals: 2584
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genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2489
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4672
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 761
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: ReadPosRankSum

15-79165325-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79165325
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79165325
    reference: chr 15
allele count: 1
allele frequency: 5.028157683024939e-5
allele num: 19888
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000558893
  gene symbol: MORF4L1
  hgvsc: ENST00000558893.1:n.11G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453231
  ensembl transcript: ENST00000558746
  gene symbol: MORF4L1
  hgvsc: ENST00000558746.1:c.-35G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000408880
  ensembl transcript: ENST00000426013
  gene symbol: MORF4L1
  hgvsc: ENST00000426013.2:c.-35G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000331310
  ensembl transcript: ENST00000331268
  gene symbol: MORF4L1
  hgvsc: ENST00000331268.5:c.-35G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000454191
  ensembl transcript: ENST00000559930
  gene symbol: MORF4L1
  hgvsc: ENST00000559930.1:c.-360G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000557961
  gene symbol: MORF4L1
  hgvsc: ENST00000557961.1:n.168G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559697
  gene symbol: MORF4L1
  hgvsc: ENST00000559697.1:n.416-5230G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453738
  ensembl transcript: ENST00000558830
  gene symbol: MORF4L1
  hgvsc: ENST00000558830.1:c.-252G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000368850
  ensembl transcript: ENST00000379535
  gene symbol: MORF4L1
  hgvsc: ENST00000379535.4:c.116-5230G>A
  variant of: http://identifiers.org/hgnc/16989
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1810
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27207
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2744
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2137
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1801
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4236
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22336
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: African
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

15-79165339-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79165339
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79165339
    reference: chr 15
allele count: 1
allele frequency: 4.870920603994155e-5
allele num: 20530
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559697
  gene symbol: MORF4L1
  hgvsc: ENST00000559697.1:n.416-5216G>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000454191
  ensembl transcript: ENST00000559930
  gene symbol: MORF4L1
  hgvsc: ENST00000559930.1:c.-346G>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453231
  ensembl transcript: ENST00000558746
  gene symbol: MORF4L1
  hgvsc: ENST00000558746.1:c.-21G>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000408880
  ensembl transcript: ENST00000426013
  gene symbol: MORF4L1
  hgvsc: ENST00000426013.2:c.-21G>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000558893
  gene symbol: MORF4L1
  hgvsc: ENST00000558893.1:n.25G>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000557961
  gene symbol: MORF4L1
  hgvsc: ENST00000557961.1:n.182G>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000331310
  ensembl transcript: ENST00000331268
  gene symbol: MORF4L1
  hgvsc: ENST00000331268.5:c.-21G>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000368850
  ensembl transcript: ENST00000379535
  gene symbol: MORF4L1
  hgvsc: ENST00000379535.4:c.116-5216G>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453738
  ensembl transcript: ENST00000558830
  gene symbol: MORF4L1
  hgvsc: ENST00000558830.1:c.-238G>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000558522
  gene symbol: MORF4L1
  hgvsc: ENST00000558522.1:n.14G>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559619
  gene symbol: MORF4L1
  hgvsc: ENST00000559619.1:n.11G>T
  variant of: http://identifiers.org/hgnc/16989
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1806
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28227
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3768
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/15-79165340-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79165340
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79165340
    reference: chr 15
allele count: 2
allele frequency: 9.724788485850433e-5
allele num: 20566
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559619
  gene symbol: MORF4L1
  hgvsc: ENST00000559619.1:n.12A>C
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000558893
  gene symbol: MORF4L1
  hgvsc: ENST00000558893.1:n.26A>C
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453231
  ensembl transcript: ENST00000558746
  gene symbol: MORF4L1
  hgvsc: ENST00000558746.1:c.-20A>C
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000368850
  ensembl transcript: ENST00000379535
  gene symbol: MORF4L1
  hgvsc: ENST00000379535.4:c.116-5215A>C
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000408880
  ensembl transcript: ENST00000426013
  gene symbol: MORF4L1
  hgvsc: ENST00000426013.2:c.-20A>C
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000558522
  gene symbol: MORF4L1
  hgvsc: ENST00000558522.1:n.15A>C
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000557961
  gene symbol: MORF4L1
  hgvsc: ENST00000557961.1:n.183A>C
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000454191
  ensembl transcript: ENST00000559930
  gene symbol: MORF4L1
  hgvsc: ENST00000559930.1:c.-345A>C
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000331310
  ensembl transcript: ENST00000331268
  gene symbol: MORF4L1
  hgvsc: ENST00000331268.5:c.-20A>C
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453738
  ensembl transcript: ENST00000558830
  gene symbol: MORF4L1
  hgvsc: ENST00000558830.1:c.-237A>C
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559697
  gene symbol: MORF4L1
  hgvsc: ENST00000559697.1:n.416-5215A>C
  variant of: http://identifiers.org/hgnc/16989
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2645
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28272
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3855
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2960
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

15-79165343-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79165343
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79165343
    reference: chr 15
allele count: 4
allele frequency: 1.938172303517783e-4
allele num: 20638
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559697
  gene symbol: MORF4L1
  hgvsc: ENST00000559697.1:n.416-5212C>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000331310
  ensembl transcript: ENST00000331268
  gene symbol: MORF4L1
  hgvsc: ENST00000331268.5:c.-17C>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453231
  ensembl transcript: ENST00000558746
  gene symbol: MORF4L1
  hgvsc: ENST00000558746.1:c.-17C>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000408880
  ensembl transcript: ENST00000426013
  gene symbol: MORF4L1
  hgvsc: ENST00000426013.2:c.-17C>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000558522
  gene symbol: MORF4L1
  hgvsc: ENST00000558522.1:n.18C>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559619
  gene symbol: MORF4L1
  hgvsc: ENST00000559619.1:n.15C>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000368850
  ensembl transcript: ENST00000379535
  gene symbol: MORF4L1
  hgvsc: ENST00000379535.4:c.116-5212C>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000558893
  gene symbol: MORF4L1
  hgvsc: ENST00000558893.1:n.29C>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453738
  ensembl transcript: ENST00000558830
  gene symbol: MORF4L1
  hgvsc: ENST00000558830.1:c.-234C>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000557961
  gene symbol: MORF4L1
  hgvsc: ENST00000557961.1:n.186C>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000454191
  ensembl transcript: ENST00000559930
  gene symbol: MORF4L1
  hgvsc: ENST00000559930.1:c.-342C>T
  variant of: http://identifiers.org/hgnc/16989
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4057
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28301
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1958
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2668
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD

15-79165349-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79165349
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79165349
    reference: chr 15
allele count: 1
allele frequency: 4.803073967339097e-5
allele num: 20820
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559619
  gene symbol: MORF4L1
  hgvsc: ENST00000559619.1:n.21A>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000331310
  ensembl transcript: ENST00000331268
  gene symbol: MORF4L1
  hgvsc: ENST00000331268.5:c.-11A>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000454191
  ensembl transcript: ENST00000559930
  gene symbol: MORF4L1
  hgvsc: ENST00000559930.1:c.-336A>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000408880
  ensembl transcript: ENST00000426013
  gene symbol: MORF4L1
  hgvsc: ENST00000426013.2:c.-11A>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559697
  gene symbol: MORF4L1
  hgvsc: ENST00000559697.1:n.416-5206A>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453738
  ensembl transcript: ENST00000558830
  gene symbol: MORF4L1
  hgvsc: ENST00000558830.1:c.-228A>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453231
  ensembl transcript: ENST00000558746
  gene symbol: MORF4L1
  hgvsc: ENST00000558746.1:c.-11A>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000452717
  ensembl transcript: ENST00000559345
  gene symbol: MORF4L1
  hgvsc: ENST00000559345.1:c.-436A>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000558522
  gene symbol: MORF4L1
  hgvsc: ENST00000558522.1:n.24A>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000558893
  gene symbol: MORF4L1
  hgvsc: ENST00000558893.1:n.35A>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000557961
  gene symbol: MORF4L1
  hgvsc: ENST00000557961.1:n.192A>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000368850
  ensembl transcript: ENST00000379535
  gene symbol: MORF4L1
  hgvsc: ENST00000379535.4:c.116-5206A>G
  variant of: http://identifiers.org/hgnc/16989
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1824
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28543
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1976
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4510
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2747
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

15-79165349-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79165349
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79165349
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 20820
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000408880
  ensembl transcript: ENST00000426013
  gene symbol: MORF4L1
  hgvsc: ENST00000426013.2:c.-11A>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000368850
  ensembl transcript: ENST00000379535
  gene symbol: MORF4L1
  hgvsc: ENST00000379535.4:c.116-5206A>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453231
  ensembl transcript: ENST00000558746
  gene symbol: MORF4L1
  hgvsc: ENST00000558746.1:c.-11A>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000452717
  ensembl transcript: ENST00000559345
  gene symbol: MORF4L1
  hgvsc: ENST00000559345.1:c.-436A>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559619
  gene symbol: MORF4L1
  hgvsc: ENST00000559619.1:n.21A>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000454191
  ensembl transcript: ENST00000559930
  gene symbol: MORF4L1
  hgvsc: ENST00000559930.1:c.-336A>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000331310
  ensembl transcript: ENST00000331268
  gene symbol: MORF4L1
  hgvsc: ENST00000331268.5:c.-11A>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000557961
  gene symbol: MORF4L1
  hgvsc: ENST00000557961.1:n.192A>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000558522
  gene symbol: MORF4L1
  hgvsc: ENST00000558522.1:n.24A>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000558893
  gene symbol: MORF4L1
  hgvsc: ENST00000558893.1:n.35A>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453738
  ensembl transcript: ENST00000558830
  gene symbol: MORF4L1
  hgvsc: ENST00000558830.1:c.-228A>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559697
  gene symbol: MORF4L1
  hgvsc: ENST00000559697.1:n.416-5206A>T
  variant of: http://identifiers.org/hgnc/16989
canonical: true
consequence: 5' UTR
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1824
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28543
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4510
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2747
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1976
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: African
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/15-79165351-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79165351
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79165351
    reference: chr 15
allele count: 1
allele frequency: 4.797543657647284e-5
allele num: 20844
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000368850
  ensembl transcript: ENST00000379535
  gene symbol: MORF4L1
  hgvsc: ENST00000379535.4:c.116-5204C>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559697
  gene symbol: MORF4L1
  hgvsc: ENST00000559697.1:n.416-5204C>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000331310
  ensembl transcript: ENST00000331268
  gene symbol: MORF4L1
  hgvsc: ENST00000331268.5:c.-9C>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453738
  ensembl transcript: ENST00000558830
  gene symbol: MORF4L1
  hgvsc: ENST00000558830.1:c.-226C>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000557961
  gene symbol: MORF4L1
  hgvsc: ENST00000557961.1:n.194C>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000454191
  ensembl transcript: ENST00000559930
  gene symbol: MORF4L1
  hgvsc: ENST00000559930.1:c.-334C>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000452717
  ensembl transcript: ENST00000559345
  gene symbol: MORF4L1
  hgvsc: ENST00000559345.1:c.-434C>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000558893
  gene symbol: MORF4L1
  hgvsc: ENST00000558893.1:n.37C>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559619
  gene symbol: MORF4L1
  hgvsc: ENST00000559619.1:n.23C>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453231
  ensembl transcript: ENST00000558746
  gene symbol: MORF4L1
  hgvsc: ENST00000558746.1:c.-9C>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000408880
  ensembl transcript: ENST00000426013
  gene symbol: MORF4L1
  hgvsc: ENST00000426013.2:c.-9C>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000558522
  gene symbol: MORF4L1
  hgvsc: ENST00000558522.1:n.26C>A
  variant of: http://identifiers.org/hgnc/16989
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4704
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28578
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2759
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ

15-79165356-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79165356
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79165356
    reference: chr 15
allele count: 1
allele frequency: 4.7782874617737e-5
allele num: 20928
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000368850
  ensembl transcript: ENST00000379535
  gene symbol: MORF4L1
  hgvsc: ENST00000379535.4:c.116-5199A>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559619
  gene symbol: MORF4L1
  hgvsc: ENST00000559619.1:n.28A>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453231
  ensembl transcript: ENST00000558746
  gene symbol: MORF4L1
  hgvsc: ENST00000558746.1:c.-4A>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000454191
  ensembl transcript: ENST00000559930
  gene symbol: MORF4L1
  hgvsc: ENST00000559930.1:c.-329A>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000557961
  gene symbol: MORF4L1
  hgvsc: ENST00000557961.1:n.199A>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000452717
  ensembl transcript: ENST00000559345
  gene symbol: MORF4L1
  hgvsc: ENST00000559345.1:c.-429A>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000408880
  ensembl transcript: ENST00000426013
  gene symbol: MORF4L1
  hgvsc: ENST00000426013.2:c.-4A>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453738
  ensembl transcript: ENST00000558830
  gene symbol: MORF4L1
  hgvsc: ENST00000558830.1:c.-221A>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000331310
  ensembl transcript: ENST00000331268
  gene symbol: MORF4L1
  hgvsc: ENST00000331268.5:c.-4A>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000558522
  gene symbol: MORF4L1
  hgvsc: ENST00000558522.1:n.31A>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559697
  gene symbol: MORF4L1
  hgvsc: ENST00000559697.1:n.416-5199A>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000558893
  gene symbol: MORF4L1
  hgvsc: ENST00000558893.1:n.42A>G
  variant of: http://identifiers.org/hgnc/16989
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2793
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28578
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5079
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1990
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD

15-79165374-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79165374
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79165374
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 21094
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000558522
  gene symbol: MORF4L1
  hgvsc: ENST00000558522.1:n.49G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000452717
  ensembl transcript: ENST00000559345
  gene symbol: MORF4L1
  hgvsc: ENST00000559345.1:c.-411G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000561171
  gene symbol: MORF4L1
  hgvsc: ENST00000561171.1:n.8G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000368850
  ensembl transcript: ENST00000379535
  gene symbol: MORF4L1
  hgvsc: ENST00000379535.4:c.116-5181G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000331310
  ensembl transcript: ENST00000331268
  gene symbol: MORF4L1
  hgvsc: ENST00000331268.5:c.15G>A
  hgvsp: ENST00000331268.5:c.15G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000408880
  ensembl transcript: ENST00000426013
  gene symbol: MORF4L1
  hgvsc: ENST00000426013.2:c.15G>A
  hgvsp: ENST00000426013.2:c.15G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000454191
  ensembl transcript: ENST00000559930
  gene symbol: MORF4L1
  hgvsc: ENST00000559930.1:c.-311G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453231
  ensembl transcript: ENST00000558746
  gene symbol: MORF4L1
  hgvsc: ENST00000558746.1:c.15G>A
  hgvsp: ENST00000558746.1:c.15G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559619
  gene symbol: MORF4L1
  hgvsc: ENST00000559619.1:n.46G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559697
  gene symbol: MORF4L1
  hgvsc: ENST00000559697.1:n.416-5181G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000558893
  gene symbol: MORF4L1
  hgvsc: ENST00000558893.1:n.60G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453738
  ensembl transcript: ENST00000558830
  gene symbol: MORF4L1
  hgvsc: ENST00000558830.1:c.-203G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000557961
  gene symbol: MORF4L1
  hgvsc: ENST00000557961.1:n.217G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000452808
  ensembl transcript: ENST00000558502
  gene symbol: MORF4L1
  hgvsc: ENST00000558502.1:c.-135G>A
  variant of: http://identifiers.org/hgnc/16989
canonical: true
consequence: synonymous
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28313
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5494
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2808
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln5Gln
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
reference allele: G
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

15-79165374-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79165374
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79165374
    reference: chr 15
allele count: 6
allele frequency: 2.844410732909832e-4
allele num: 21094
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453231
  ensembl transcript: ENST00000558746
  gene symbol: MORF4L1
  hgvsc: ENST00000558746.1:c.15G>C
  hgvsp: ENSP00000453231.1:p.Gln5His
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000452717
  ensembl transcript: ENST00000559345
  gene symbol: MORF4L1
  hgvsc: ENST00000559345.1:c.-411G>C
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000561171
  gene symbol: MORF4L1
  hgvsc: ENST00000561171.1:n.8G>C
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000557961
  gene symbol: MORF4L1
  hgvsc: ENST00000557961.1:n.217G>C
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000452808
  ensembl transcript: ENST00000558502
  gene symbol: MORF4L1
  hgvsc: ENST00000558502.1:c.-135G>C
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453738
  ensembl transcript: ENST00000558830
  gene symbol: MORF4L1
  hgvsc: ENST00000558830.1:c.-203G>C
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000454191
  ensembl transcript: ENST00000559930
  gene symbol: MORF4L1
  hgvsc: ENST00000559930.1:c.-311G>C
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000368850
  ensembl transcript: ENST00000379535
  gene symbol: MORF4L1
  hgvsc: ENST00000379535.4:c.116-5181G>C
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000558893
  gene symbol: MORF4L1
  hgvsc: ENST00000558893.1:n.60G>C
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000331310
  ensembl transcript: ENST00000331268
  gene symbol: MORF4L1
  hgvsc: ENST00000331268.5:c.15G>C
  hgvsp: ENSP00000331310.5:p.Gln5His
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000558522
  gene symbol: MORF4L1
  hgvsc: ENST00000558522.1:n.49G>C
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559697
  gene symbol: MORF4L1
  hgvsc: ENST00000559697.1:n.416-5181G>C
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559619
  gene symbol: MORF4L1
  hgvsc: ENST00000559619.1:n.46G>C
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000408880
  ensembl transcript: ENST00000426013
  gene symbol: MORF4L1
  hgvsc: ENST00000426013.2:c.15G>C
  hgvsp: ENSP00000408880.2:p.Gln5His
  variant of: http://identifiers.org/hgnc/16989
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5494
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2808
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28313
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Gln5His
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

15-79165414-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79165414
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79165414
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 21034
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000368850
  ensembl transcript: ENST00000379535
  gene symbol: MORF4L1
  hgvsc: ENST00000379535.4:c.116-5141T>C
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000452717
  ensembl transcript: ENST00000559345
  gene symbol: MORF4L1
  hgvsc: ENST00000559345.1:c.-371T>C
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000558522
  gene symbol: MORF4L1
  hgvsc: ENST00000558522.1:n.74+15T>C
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000561171
  gene symbol: MORF4L1
  hgvsc: ENST00000561171.1:n.33+15T>C
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453231
  ensembl transcript: ENST00000558746
  gene symbol: MORF4L1
  hgvsc: ENST00000558746.1:c.40+15T>C
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559258
  gene symbol: MORF4L1
  hgvsc: ENST00000559258.1:n.15+15T>C
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000557961
  gene symbol: MORF4L1
  hgvsc: ENST00000557961.1:n.242+15T>C
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000408880
  ensembl transcript: ENST00000426013
  gene symbol: MORF4L1
  hgvsc: ENST00000426013.2:c.40+15T>C
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000452808
  ensembl transcript: ENST00000558502
  gene symbol: MORF4L1
  hgvsc: ENST00000558502.1:c.-110+15T>C
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559619
  gene symbol: MORF4L1
  hgvsc: ENST00000559619.1:n.71+15T>C
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000454191
  ensembl transcript: ENST00000559930
  gene symbol: MORF4L1
  hgvsc: ENST00000559930.1:c.-271T>C
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453738
  ensembl transcript: ENST00000558830
  gene symbol: MORF4L1
  hgvsc: ENST00000558830.1:c.-178+15T>C
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559697
  gene symbol: MORF4L1
  hgvsc: ENST00000559697.1:n.416-5141T>C
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000331310
  ensembl transcript: ENST00000331268
  gene symbol: MORF4L1
  hgvsc: ENST00000331268.5:c.40+15T>C
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000558893
  gene symbol: MORF4L1
  hgvsc: ENST00000558893.1:n.85+15T>C
  variant of: http://identifiers.org/hgnc/16989
canonical: false
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24584
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1854
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2665
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2474
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

15-79165417-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79165417
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79165417
    reference: chr 15
allele count: 1
allele frequency: 4.756921320521359e-5
allele num: 21022
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000368850
  ensembl transcript: ENST00000379535
  gene symbol: MORF4L1
  hgvsc: ENST00000379535.4:c.116-5138G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453738
  ensembl transcript: ENST00000558830
  gene symbol: MORF4L1
  hgvsc: ENST00000558830.1:c.-178+18G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000454191
  ensembl transcript: ENST00000559930
  gene symbol: MORF4L1
  hgvsc: ENST00000559930.1:c.-268G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559697
  gene symbol: MORF4L1
  hgvsc: ENST00000559697.1:n.416-5138G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559619
  gene symbol: MORF4L1
  hgvsc: ENST00000559619.1:n.71+18G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000558522
  gene symbol: MORF4L1
  hgvsc: ENST00000558522.1:n.74+18G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000408880
  ensembl transcript: ENST00000426013
  gene symbol: MORF4L1
  hgvsc: ENST00000426013.2:c.40+18G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000452717
  ensembl transcript: ENST00000559345
  gene symbol: MORF4L1
  hgvsc: ENST00000559345.1:c.-368G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000561171
  gene symbol: MORF4L1
  hgvsc: ENST00000561171.1:n.33+18G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000558893
  gene symbol: MORF4L1
  hgvsc: ENST00000558893.1:n.85+18G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559258
  gene symbol: MORF4L1
  hgvsc: ENST00000559258.1:n.15+18G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453231
  ensembl transcript: ENST00000558746
  gene symbol: MORF4L1
  hgvsc: ENST00000558746.1:c.40+18G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000452808
  ensembl transcript: ENST00000558502
  gene symbol: MORF4L1
  hgvsc: ENST00000558502.1:c.-110+18G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000557961
  gene symbol: MORF4L1
  hgvsc: ENST00000557961.1:n.242+18G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000331310
  ensembl transcript: ENST00000331268
  gene symbol: MORF4L1
  hgvsc: ENST00000331268.5:c.40+18G>A
  variant of: http://identifiers.org/hgnc/16989
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1854
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24039
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: DP

15-79165418-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79165418
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79165417
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 21008
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453231
  ensembl transcript: ENST00000558746
  gene symbol: MORF4L1
  hgvsc: ENST00000558746.1:c.40+24delA
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000558522
  gene symbol: MORF4L1
  hgvsc: ENST00000558522.1:n.74+24delA
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453738
  ensembl transcript: ENST00000558830
  gene symbol: MORF4L1
  hgvsc: ENST00000558830.1:c.-178+24delA
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000557961
  gene symbol: MORF4L1
  hgvsc: ENST00000557961.1:n.242+24delA
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000368850
  ensembl transcript: ENST00000379535
  gene symbol: MORF4L1
  hgvsc: ENST00000379535.4:c.116-5132delA
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559258
  gene symbol: MORF4L1
  hgvsc: ENST00000559258.1:n.15+24delA
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000558893
  gene symbol: MORF4L1
  hgvsc: ENST00000558893.1:n.85+24delA
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559619
  gene symbol: MORF4L1
  hgvsc: ENST00000559619.1:n.71+24delA
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000452808
  ensembl transcript: ENST00000558502
  gene symbol: MORF4L1
  hgvsc: ENST00000558502.1:c.-110+24delA
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000331310
  ensembl transcript: ENST00000331268
  gene symbol: MORF4L1
  hgvsc: ENST00000331268.5:c.40+24delA
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559697
  gene symbol: MORF4L1
  hgvsc: ENST00000559697.1:n.416-5132delA
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000452717
  ensembl transcript: ENST00000559345
  gene symbol: MORF4L1
  hgvsc: ENST00000559345.1:c.-362delA
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000454191
  ensembl transcript: ENST00000559930
  gene symbol: MORF4L1
  hgvsc: ENST00000559930.1:c.-262delA
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000561171
  gene symbol: MORF4L1
  hgvsc: ENST00000561171.1:n.33+24delA
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000408880
  ensembl transcript: ENST00000426013
  gene symbol: MORF4L1
  hgvsc: ENST00000426013.2:c.40+24delA
  variant of: http://identifiers.org/hgnc/16989
canonical: false
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2056
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23844
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2239
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
population: East Asian
reference allele: GA
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

15-79165420-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79165420
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79165420
    reference: chr 15
allele count: 9
allele frequency: 4.284490145672665e-4
allele num: 21006
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000452717
  ensembl transcript: ENST00000559345
  gene symbol: MORF4L1
  hgvsc: ENST00000559345.1:c.-365A>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000331310
  ensembl transcript: ENST00000331268
  gene symbol: MORF4L1
  hgvsc: ENST00000331268.5:c.40+21A>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000558522
  gene symbol: MORF4L1
  hgvsc: ENST00000558522.1:n.74+21A>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559258
  gene symbol: MORF4L1
  hgvsc: ENST00000559258.1:n.15+21A>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000561171
  gene symbol: MORF4L1
  hgvsc: ENST00000561171.1:n.33+21A>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000368850
  ensembl transcript: ENST00000379535
  gene symbol: MORF4L1
  hgvsc: ENST00000379535.4:c.116-5135A>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559697
  gene symbol: MORF4L1
  hgvsc: ENST00000559697.1:n.416-5135A>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453738
  ensembl transcript: ENST00000558830
  gene symbol: MORF4L1
  hgvsc: ENST00000558830.1:c.-178+21A>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000408880
  ensembl transcript: ENST00000426013
  gene symbol: MORF4L1
  hgvsc: ENST00000426013.2:c.40+21A>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559619
  gene symbol: MORF4L1
  hgvsc: ENST00000559619.1:n.71+21A>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000557961
  gene symbol: MORF4L1
  hgvsc: ENST00000557961.1:n.242+21A>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453231
  ensembl transcript: ENST00000558746
  gene symbol: MORF4L1
  hgvsc: ENST00000558746.1:c.40+21A>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000454191
  ensembl transcript: ENST00000559930
  gene symbol: MORF4L1
  hgvsc: ENST00000559930.1:c.-265A>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000452808
  ensembl transcript: ENST00000558502
  gene symbol: MORF4L1
  hgvsc: ENST00000558502.1:c.-110+21A>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000558893
  gene symbol: MORF4L1
  hgvsc: ENST00000558893.1:n.85+21A>G
  variant of: http://identifiers.org/hgnc/16989
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2127
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23581
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ

15-79165427-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79165427
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79165427
    reference: chr 15
allele count: 1
allele frequency: 4.776917932549919e-5
allele num: 20934
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000558893
  gene symbol: MORF4L1
  hgvsc: ENST00000558893.1:n.85+28A>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559697
  gene symbol: MORF4L1
  hgvsc: ENST00000559697.1:n.416-5128A>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453738
  ensembl transcript: ENST00000558830
  gene symbol: MORF4L1
  hgvsc: ENST00000558830.1:c.-178+28A>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000452808
  ensembl transcript: ENST00000558502
  gene symbol: MORF4L1
  hgvsc: ENST00000558502.1:c.-110+28A>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000331310
  ensembl transcript: ENST00000331268
  gene symbol: MORF4L1
  hgvsc: ENST00000331268.5:c.40+28A>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559258
  gene symbol: MORF4L1
  hgvsc: ENST00000559258.1:n.15+28A>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000408880
  ensembl transcript: ENST00000426013
  gene symbol: MORF4L1
  hgvsc: ENST00000426013.2:c.40+28A>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000368850
  ensembl transcript: ENST00000379535
  gene symbol: MORF4L1
  hgvsc: ENST00000379535.4:c.116-5128A>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000557961
  gene symbol: MORF4L1
  hgvsc: ENST00000557961.1:n.242+28A>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000452717
  ensembl transcript: ENST00000559345
  gene symbol: MORF4L1
  hgvsc: ENST00000559345.1:c.-358A>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000558522
  gene symbol: MORF4L1
  hgvsc: ENST00000558522.1:n.74+28A>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000454191
  ensembl transcript: ENST00000559930
  gene symbol: MORF4L1
  hgvsc: ENST00000559930.1:c.-258A>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000561171
  gene symbol: MORF4L1
  hgvsc: ENST00000561171.1:n.33+28A>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559619
  gene symbol: MORF4L1
  hgvsc: ENST00000559619.1:n.71+28A>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453231
  ensembl transcript: ENST00000558746
  gene symbol: MORF4L1
  hgvsc: ENST00000558746.1:c.40+28A>G
  variant of: http://identifiers.org/hgnc/16989
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2533
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21878
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

15-79165429-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79165429
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79165429
    reference: chr 15
allele count: 1
allele frequency: 4.776005349125991e-5
allele num: 20938
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000454191
  ensembl transcript: ENST00000559930
  gene symbol: MORF4L1
  hgvsc: ENST00000559930.1:c.-256C>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559619
  gene symbol: MORF4L1
  hgvsc: ENST00000559619.1:n.71+30C>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000368850
  ensembl transcript: ENST00000379535
  gene symbol: MORF4L1
  hgvsc: ENST00000379535.4:c.116-5126C>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453738
  ensembl transcript: ENST00000558830
  gene symbol: MORF4L1
  hgvsc: ENST00000558830.1:c.-178+30C>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559697
  gene symbol: MORF4L1
  hgvsc: ENST00000559697.1:n.416-5126C>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559258
  gene symbol: MORF4L1
  hgvsc: ENST00000559258.1:n.15+30C>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000408880
  ensembl transcript: ENST00000426013
  gene symbol: MORF4L1
  hgvsc: ENST00000426013.2:c.40+30C>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000452717
  ensembl transcript: ENST00000559345
  gene symbol: MORF4L1
  hgvsc: ENST00000559345.1:c.-356C>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000558893
  gene symbol: MORF4L1
  hgvsc: ENST00000558893.1:n.85+30C>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000557961
  gene symbol: MORF4L1
  hgvsc: ENST00000557961.1:n.242+30C>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000452808
  ensembl transcript: ENST00000558502
  gene symbol: MORF4L1
  hgvsc: ENST00000558502.1:c.-110+30C>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000561171
  gene symbol: MORF4L1
  hgvsc: ENST00000561171.1:n.33+30C>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000331310
  ensembl transcript: ENST00000331268
  gene symbol: MORF4L1
  hgvsc: ENST00000331268.5:c.40+30C>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453231
  ensembl transcript: ENST00000558746
  gene symbol: MORF4L1
  hgvsc: ENST00000558746.1:c.40+30C>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000558522
  gene symbol: MORF4L1
  hgvsc: ENST00000558522.1:n.74+30C>T
  variant of: http://identifiers.org/hgnc/16989
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21564
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2522
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

15-79165434-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79165434
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79165434
    reference: chr 15
allele count: 1
allele frequency: 4.786521156423511e-5
allele num: 20892
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453738
  ensembl transcript: ENST00000558830
  gene symbol: MORF4L1
  hgvsc: ENST00000558830.1:c.-178+35G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000331310
  ensembl transcript: ENST00000331268
  gene symbol: MORF4L1
  hgvsc: ENST00000331268.5:c.40+35G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000558893
  gene symbol: MORF4L1
  hgvsc: ENST00000558893.1:n.85+35G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559258
  gene symbol: MORF4L1
  hgvsc: ENST00000559258.1:n.15+35G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559619
  gene symbol: MORF4L1
  hgvsc: ENST00000559619.1:n.71+35G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000452717
  ensembl transcript: ENST00000559345
  gene symbol: MORF4L1
  hgvsc: ENST00000559345.1:c.-351G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000368850
  ensembl transcript: ENST00000379535
  gene symbol: MORF4L1
  hgvsc: ENST00000379535.4:c.116-5121G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000557961
  gene symbol: MORF4L1
  hgvsc: ENST00000557961.1:n.242+35G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000561171
  gene symbol: MORF4L1
  hgvsc: ENST00000561171.1:n.33+35G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000408880
  ensembl transcript: ENST00000426013
  gene symbol: MORF4L1
  hgvsc: ENST00000426013.2:c.40+35G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000454191
  ensembl transcript: ENST00000559930
  gene symbol: MORF4L1
  hgvsc: ENST00000559930.1:c.-251G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559697
  gene symbol: MORF4L1
  hgvsc: ENST00000559697.1:n.416-5121G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000452808
  ensembl transcript: ENST00000558502
  gene symbol: MORF4L1
  hgvsc: ENST00000558502.1:c.-110+35G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453231
  ensembl transcript: ENST00000558746
  gene symbol: MORF4L1
  hgvsc: ENST00000558746.1:c.40+35G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000558522
  gene symbol: MORF4L1
  hgvsc: ENST00000558522.1:n.74+35G>A
  variant of: http://identifiers.org/hgnc/16989
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2034
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20544
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD

15-79165437-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79165437
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79165437
    reference: chr 15
allele count: 36
allele frequency: 1.724137931034483e-3
allele num: 20880
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000408880
  ensembl transcript: ENST00000426013
  gene symbol: MORF4L1
  hgvsc: ENST00000426013.2:c.40+38G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453738
  ensembl transcript: ENST00000558830
  gene symbol: MORF4L1
  hgvsc: ENST00000558830.1:c.-178+38G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000452717
  ensembl transcript: ENST00000559345
  gene symbol: MORF4L1
  hgvsc: ENST00000559345.1:c.-348G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559697
  gene symbol: MORF4L1
  hgvsc: ENST00000559697.1:n.416-5118G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000454191
  ensembl transcript: ENST00000559930
  gene symbol: MORF4L1
  hgvsc: ENST00000559930.1:c.-248G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000557961
  gene symbol: MORF4L1
  hgvsc: ENST00000557961.1:n.242+38G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000558893
  gene symbol: MORF4L1
  hgvsc: ENST00000558893.1:n.85+38G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559619
  gene symbol: MORF4L1
  hgvsc: ENST00000559619.1:n.71+38G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000558522
  gene symbol: MORF4L1
  hgvsc: ENST00000558522.1:n.74+38G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559258
  gene symbol: MORF4L1
  hgvsc: ENST00000559258.1:n.15+38G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000561171
  gene symbol: MORF4L1
  hgvsc: ENST00000561171.1:n.33+38G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000452808
  ensembl transcript: ENST00000558502
  gene symbol: MORF4L1
  hgvsc: ENST00000558502.1:c.-110+38G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453231
  ensembl transcript: ENST00000558746
  gene symbol: MORF4L1
  hgvsc: ENST00000558746.1:c.40+38G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000331310
  ensembl transcript: ENST00000331268
  gene symbol: MORF4L1
  hgvsc: ENST00000331268.5:c.40+38G>A
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000368850
  ensembl transcript: ENST00000379535
  gene symbol: MORF4L1
  hgvsc: ENST00000379535.4:c.116-5118G>A
  variant of: http://identifiers.org/hgnc/16989
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2436
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19927
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD

15-79165440-GGAGA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79165440
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79165436
    reference: chr 15
allele count: 3
allele frequency: 1.435956346927053e-4
allele num: 20892
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559258
  gene symbol: MORF4L1
  hgvsc: ENST00000559258.1:n.15+42_15+45delGAGA
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000454191
  ensembl transcript: ENST00000559930
  gene symbol: MORF4L1
  hgvsc: ENST00000559930.1:c.-244_-241delGAGA
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000558522
  gene symbol: MORF4L1
  hgvsc: ENST00000558522.1:n.74+42_74+45delGAGA
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000408880
  ensembl transcript: ENST00000426013
  gene symbol: MORF4L1
  hgvsc: ENST00000426013.2:c.40+42_40+45delGAGA
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000558893
  gene symbol: MORF4L1
  hgvsc: ENST00000558893.1:n.85+42_85+45delGAGA
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000368850
  ensembl transcript: ENST00000379535
  gene symbol: MORF4L1
  hgvsc: ENST00000379535.4:c.116-5114_116-5111delGAGA
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000452717
  ensembl transcript: ENST00000559345
  gene symbol: MORF4L1
  hgvsc: ENST00000559345.1:c.-344_-341delGAGA
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453231
  ensembl transcript: ENST00000558746
  gene symbol: MORF4L1
  hgvsc: ENST00000558746.1:c.40+42_40+45delGAGA
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453738
  ensembl transcript: ENST00000558830
  gene symbol: MORF4L1
  hgvsc: ENST00000558830.1:c.-178+42_-178+45delGAGA
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559697
  gene symbol: MORF4L1
  hgvsc: ENST00000559697.1:n.416-5114_416-5111delGAGA
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000557961
  gene symbol: MORF4L1
  hgvsc: ENST00000557961.1:n.242+42_242+45delGAGA
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000331310
  ensembl transcript: ENST00000331268
  gene symbol: MORF4L1
  hgvsc: ENST00000331268.5:c.40+42_40+45delGAGA
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559619
  gene symbol: MORF4L1
  hgvsc: ENST00000559619.1:n.71+42_71+45delGAGA
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000561171
  gene symbol: MORF4L1
  hgvsc: ENST00000561171.1:n.33+42_33+45delGAGA
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000452808
  ensembl transcript: ENST00000558502
  gene symbol: MORF4L1
  hgvsc: ENST00000558502.1:c.-110+42_-110+45delGAGA
  variant of: http://identifiers.org/hgnc/16989
canonical: false
consequence: 5' UTR
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 19465
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: GGAGA
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

15-79165441-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79165441
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79165441
    reference: chr 15
allele count: 4497
allele frequency: 2.150234292818208e-1
allele num: 20914
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453738
  ensembl transcript: ENST00000558830
  gene symbol: MORF4L1
  hgvsc: ENST00000558830.1:c.-178+42G>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559619
  gene symbol: MORF4L1
  hgvsc: ENST00000559619.1:n.71+42G>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000558893
  gene symbol: MORF4L1
  hgvsc: ENST00000558893.1:n.85+42G>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000454191
  ensembl transcript: ENST00000559930
  gene symbol: MORF4L1
  hgvsc: ENST00000559930.1:c.-244G>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559258
  gene symbol: MORF4L1
  hgvsc: ENST00000559258.1:n.15+42G>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000408880
  ensembl transcript: ENST00000426013
  gene symbol: MORF4L1
  hgvsc: ENST00000426013.2:c.40+42G>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000558522
  gene symbol: MORF4L1
  hgvsc: ENST00000558522.1:n.74+42G>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000452808
  ensembl transcript: ENST00000558502
  gene symbol: MORF4L1
  hgvsc: ENST00000558502.1:c.-110+42G>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000557961
  gene symbol: MORF4L1
  hgvsc: ENST00000557961.1:n.242+42G>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000368850
  ensembl transcript: ENST00000379535
  gene symbol: MORF4L1
  hgvsc: ENST00000379535.4:c.116-5114G>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000452717
  ensembl transcript: ENST00000559345
  gene symbol: MORF4L1
  hgvsc: ENST00000559345.1:c.-344G>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453231
  ensembl transcript: ENST00000558746
  gene symbol: MORF4L1
  hgvsc: ENST00000558746.1:c.40+42G>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559697
  gene symbol: MORF4L1
  hgvsc: ENST00000559697.1:n.416-5114G>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000331310
  ensembl transcript: ENST00000331268
  gene symbol: MORF4L1
  hgvsc: ENST00000331268.5:c.40+42G>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000561171
  gene symbol: MORF4L1
  hgvsc: ENST00000561171.1:n.33+42G>T
  variant of: http://identifiers.org/hgnc/16989
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.75e1
  variant carriers: 118
genotype depth: GenotypeDepth
  all individuals: 1807
  bin: 7.5e0
  variant carriers: 660
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 101
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.75e1
  variant carriers: 117
genotype depth: GenotypeDepth
  all individuals: 17653
  bin: 2.5e0
  variant carriers: 1108
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 1.75e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 2.75e1
  variant carriers: 106
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 3.75e1
  variant carriers: 149
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 5.25e1
  variant carriers: 150
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.25e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 103
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.75e1
  variant carriers: 147
genotype quality: GenotypeQuality
num of homozygotes: 535
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum

15-79168824-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79168824
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79168824
    reference: chr 15
allele count: 1
allele frequency: 9.349289454001496e-5
allele num: 10696
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000558893
  gene symbol: MORF4L1
  hgvsc: ENST00000558893.1:n.86-1731T>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000558522
  gene symbol: MORF4L1
  hgvsc: ENST00000558522.1:n.75-1731T>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000408880
  ensembl transcript: ENST00000426013
  gene symbol: MORF4L1
  hgvsc: ENST00000426013.2:c.41-1731T>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559258
  gene symbol: MORF4L1
  hgvsc: ENST00000559258.1:n.16-1731T>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453432
  ensembl transcript: ENST00000559158
  gene symbol: MORF4L1
  hgvsc: ENST00000559158.1:c.-224-1731T>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000368850
  ensembl transcript: ENST00000379535
  gene symbol: MORF4L1
  hgvsc: ENST00000379535.4:c.116-1731T>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453738
  ensembl transcript: ENST00000558830
  gene symbol: MORF4L1
  hgvsc: ENST00000558830.1:c.-178+3425T>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000452717
  ensembl transcript: ENST00000559345
  gene symbol: MORF4L1
  hgvsc: ENST00000559345.1:c.-224-1731T>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000454191
  ensembl transcript: ENST00000559930
  gene symbol: MORF4L1
  hgvsc: ENST00000559930.1:c.-224-1731T>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000331310
  ensembl transcript: ENST00000331268
  gene symbol: MORF4L1
  hgvsc: ENST00000331268.5:c.41-1731T>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453351
  ensembl transcript: ENST00000559690
  gene symbol: MORF4L1
  hgvsc: ENST00000559690.1:c.-224-1731T>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453231
  ensembl transcript: ENST00000558746
  gene symbol: MORF4L1
  hgvsc: ENST00000558746.1:c.41-1731T>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000557961
  gene symbol: MORF4L1
  hgvsc: ENST00000557961.1:n.243-1731T>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559697
  gene symbol: MORF4L1
  hgvsc: ENST00000559697.1:n.416-1731T>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000452808
  ensembl transcript: ENST00000558502
  gene symbol: MORF4L1
  hgvsc: ENST00000558502.1:c.-110+3425T>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559619
  gene symbol: MORF4L1
  hgvsc: ENST00000559619.1:n.72-1731T>G
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000561171
  gene symbol: MORF4L1
  hgvsc: ENST00000561171.1:n.34-1731T>G
  variant of: http://identifiers.org/hgnc/16989
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

15-79168867-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79168867
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79168867
    reference: chr 15
allele count: 1
allele frequency: 9.298865538404315e-5
allele num: 10754
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453625
  ensembl transcript: ENST00000560422
  gene symbol: MORF4L1
  hgvsc: ENST00000560422.1:c.9C>T
  hgvsp: ENST00000560422.1:c.9C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000452717
  ensembl transcript: ENST00000559345
  gene symbol: MORF4L1
  hgvsc: ENST00000559345.1:c.-224-1688C>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453231
  ensembl transcript: ENST00000558746
  gene symbol: MORF4L1
  hgvsc: ENST00000558746.1:c.41-1688C>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559258
  gene symbol: MORF4L1
  hgvsc: ENST00000559258.1:n.16-1688C>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000452808
  ensembl transcript: ENST00000558502
  gene symbol: MORF4L1
  hgvsc: ENST00000558502.1:c.-110+3468C>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453738
  ensembl transcript: ENST00000558830
  gene symbol: MORF4L1
  hgvsc: ENST00000558830.1:c.-178+3468C>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559697
  gene symbol: MORF4L1
  hgvsc: ENST00000559697.1:n.416-1688C>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559619
  gene symbol: MORF4L1
  hgvsc: ENST00000559619.1:n.72-1688C>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000561171
  gene symbol: MORF4L1
  hgvsc: ENST00000561171.1:n.34-1688C>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000368850
  ensembl transcript: ENST00000379535
  gene symbol: MORF4L1
  hgvsc: ENST00000379535.4:c.116-1688C>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000454191
  ensembl transcript: ENST00000559930
  gene symbol: MORF4L1
  hgvsc: ENST00000559930.1:c.-224-1688C>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000557961
  gene symbol: MORF4L1
  hgvsc: ENST00000557961.1:n.243-1688C>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000408880
  ensembl transcript: ENST00000426013
  gene symbol: MORF4L1
  hgvsc: ENST00000426013.2:c.41-1688C>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000558893
  gene symbol: MORF4L1
  hgvsc: ENST00000558893.1:n.86-1688C>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453432
  ensembl transcript: ENST00000559158
  gene symbol: MORF4L1
  hgvsc: ENST00000559158.1:c.-224-1688C>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453351
  ensembl transcript: ENST00000559690
  gene symbol: MORF4L1
  hgvsc: ENST00000559690.1:c.-224-1688C>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000331310
  ensembl transcript: ENST00000331268
  gene symbol: MORF4L1
  hgvsc: ENST00000331268.5:c.41-1688C>T
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000558522
  gene symbol: MORF4L1
  hgvsc: ENST00000558522.1:n.75-1688C>T
  variant of: http://identifiers.org/hgnc/16989
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val3Val
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD

15-79168890-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79168890
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 79168891
    reference: chr 15
allele count: 9
allele frequency: 8.368978984563884e-4
allele num: 10754
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559619
  gene symbol: MORF4L1
  hgvsc: ENST00000559619.1:n.72-1657dupT
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000558522
  gene symbol: MORF4L1
  hgvsc: ENST00000558522.1:n.75-1657dupT
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559258
  gene symbol: MORF4L1
  hgvsc: ENST00000559258.1:n.16-1657dupT
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453351
  ensembl transcript: ENST00000559690
  gene symbol: MORF4L1
  hgvsc: ENST00000559690.1:c.-224-1657dupT
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000331310
  ensembl transcript: ENST00000331268
  gene symbol: MORF4L1
  hgvsc: ENST00000331268.5:c.41-1657dupT
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453625
  ensembl transcript: ENST00000560422
  gene symbol: MORF4L1
  hgvsc: ENST00000560422.1:c.40dupT
  hgvsp: ENSP00000453625.1:p.Ser14PhefsTer4
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453231
  ensembl transcript: ENST00000558746
  gene symbol: MORF4L1
  hgvsc: ENST00000558746.1:c.41-1657dupT
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000452808
  ensembl transcript: ENST00000558502
  gene symbol: MORF4L1
  hgvsc: ENST00000558502.1:c.-110+3499dupT
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000558893
  gene symbol: MORF4L1
  hgvsc: ENST00000558893.1:n.86-1657dupT
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453432
  ensembl transcript: ENST00000559158
  gene symbol: MORF4L1
  hgvsc: ENST00000559158.1:c.-224-1657dupT
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000452717
  ensembl transcript: ENST00000559345
  gene symbol: MORF4L1
  hgvsc: ENST00000559345.1:c.-224-1657dupT
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000559697
  gene symbol: MORF4L1
  hgvsc: ENST00000559697.1:n.416-1657dupT
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000557961
  gene symbol: MORF4L1
  hgvsc: ENST00000557961.1:n.243-1657dupT
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000408880
  ensembl transcript: ENST00000426013
  gene symbol: MORF4L1
  hgvsc: ENST00000426013.2:c.41-1657dupT
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl transcript: ENST00000561171
  gene symbol: MORF4L1
  hgvsc: ENST00000561171.1:n.34-1657dupT
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000368850
  ensembl transcript: ENST00000379535
  gene symbol: MORF4L1
  hgvsc: ENST00000379535.4:c.116-1657dupT
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000453738
  ensembl transcript: ENST00000558830
  gene symbol: MORF4L1
  hgvsc: ENST00000558830.1:c.-178+3499dupT
  variant of: http://identifiers.org/hgnc/16989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185787
  ensembl protein: ENSP00000454191
  ensembl transcript: ENST00000559930
  gene symbol: MORF4L1
  hgvsc: ENST00000559930.1:c.-224-1657dupT
  variant of: http://identifiers.org/hgnc/16989
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1804
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1692
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser14PhefsTer4
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1603
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1146
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49375
bin: 9.75e1
variant carriers: 109

GenotypeQuality
all individuals: 1292
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2286
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1860
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 768
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2326
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 107
allele frequency: 1.028252931001345e-2
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.727414061150458e-4
allele num: 11578
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e-1

MQ
type: SiteQuality
SIO_000300: 5.999e1

MQRankSum
type: SiteQuality
SIO_000300: 3.4e-1

DP
type: SiteQuality
SIO_000300: 3.8295e6

BaseQRankSum
type: SiteQuality
SIO_000300: 6.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

ClippingRankSum
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FS
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

African
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East Asian
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allele frequency: 0.0e0
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Latino
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Other
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European (Non-Finnish)
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allele frequency: 2.697033263410249e-4
allele num: 66740
num of homozygotes: 0

South Asian
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InbreedingCoeff
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ClippingRankSum
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MQ
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ReadPosRankSum
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VQSLOD
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FS
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DP
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MQRankSum
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.498351813005694e-5
allele num: 66740
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Other
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South Asian
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Latino
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African
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DP
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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QD
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MQ
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FS
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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East Asian
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European (Finnish)
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European (Non-Finnish)
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allele num: 66740
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South Asian
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VQSLOD
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ReadPosRankSum
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FS
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MQRankSum
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InbreedingCoeff
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DP
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BaseQRankSum
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QD
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele num: 8654
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African
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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Other
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Latino
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European (Non-Finnish)
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FS
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VQSLOD
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QD
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DP
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ReadPosRankSum
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MQ
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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num of homozygotes: 0

European (Finnish)
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South Asian
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Other
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African
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East Asian
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Latino
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QD
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ClippingRankSum
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InbreedingCoeff
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MQ
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BaseQRankSum
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ReadPosRankSum
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DP
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VQSLOD
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FS
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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Latino
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Other
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European (Finnish)
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South Asian
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European (Non-Finnish)
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ReadPosRankSum
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FS
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BaseQRankSum
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InbreedingCoeff
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MQ
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DP
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MQRankSum
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VQSLOD
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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Other
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European (Finnish)
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African
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South Asian
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European (Non-Finnish)
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ReadPosRankSum
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VQSLOD
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MQRankSum
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BaseQRankSum
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QD
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InbreedingCoeff
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DP
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FS
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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East Asian
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South Asian
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European (Non-Finnish)
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African
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QD
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DP
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InbreedingCoeff
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ClippingRankSum
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FS
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BaseQRankSum
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MQ
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ReadPosRankSum
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VQSLOD
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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African
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East Asian
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Other
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Latino
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European (Non-Finnish)
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MQRankSum
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FS
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BaseQRankSum
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ReadPosRankSum
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QD
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996703626011388e-5
allele num: 66740
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
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South Asian
type: Population
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.426e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.98e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 7.32e-1

FS
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BaseQRankSum
type: SiteQuality
SIO_000300: 7.3e0

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 4.3e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 6954
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South Asian
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allele count: 4
allele frequency: 2.848191398461977e-4
allele num: 14044
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6672
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3634
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.623376623376623e-3
allele num: 616
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 1.115573404730031e-4
allele num: 8964
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 49350
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.25e-1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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MQRankSum
type: SiteQuality
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MQ
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13984
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.041149575440888e-5
allele num: 48992
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6912
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3578
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6686
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Latino
type: Population
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allele frequency: 0.0e0
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QD
type: SiteQuality
SIO_000300: 1.571e1

ClippingRankSum
type: SiteQuality
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MQRankSum
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FS
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BaseQRankSum
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
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DP
type: SiteQuality
SIO_000300: 1.209173e6

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6886
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African
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allele count: 1
allele frequency: 1.499250374812594e-4
allele num: 6670
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Latino
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 604
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13898
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.056682160338941e-5
allele num: 48622
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3516
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.099e0

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.98e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.09e0

MQRankSum
type: SiteQuality
SIO_000300: 6.23e-1

BaseQRankSum
type: SiteQuality
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DP
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3490
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African
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allele frequency: 0.0e0
allele num: 6668
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Latino
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allele count: 1
allele frequency: 1.148369315571888e-4
allele num: 8708
num of homozygotes: 0

Other
type: Population
allele count: 0
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South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 48420
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.834e0

MQ
type: SiteQuality
SIO_000300: 5.864e1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -5.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.83e-1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.73e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.067397146991937e-5
allele num: 48370
num of homozygotes: 0

East Asian
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allele count: 0
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allele num: 6836
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African
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allele count: 3
allele frequency: 4.486987735566856e-4
allele num: 6686
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3480
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.152870647913304e-4
allele num: 8674
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: -5.72e-1

MQ
type: SiteQuality
SIO_000300: 5.893e1

QD
type: SiteQuality
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DP
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -8.25e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.87e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.091875156890637e-5
allele num: 47804
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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South Asian
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allele frequency: 7.298204641658152e-5
allele num: 13702
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 590
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -5.5e-3

QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.089078298654634e-5
allele num: 47868
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 590
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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Latino
type: Population
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allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
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MQ
type: SiteQuality
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QD
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VQSLOD
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BaseQRankSum
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3386
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.509661835748792e-4
allele num: 6624
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South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
allele num: 6756
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47740
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Other
type: Population
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MQRankSum
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MQ
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DP
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.996703626011388e-5
allele num: 66740
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10406
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele num: 16512
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FS
type: SiteQuality
SIO_000300: 5.3e-1

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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MQ
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ClippingRankSum
type: SiteQuality
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MQRankSum
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DP
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

African
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Latino
type: Population
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num of homozygotes: 0

Other
type: Population
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DP
type: SiteQuality
SIO_000300: 3.827131e6

ReadPosRankSum
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QD
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InbreedingCoeff
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MQRankSum
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MQ
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VQSLOD
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FS
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 1.483239394838327e-4
allele num: 6742
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European (Non-Finnish)
type: Population
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allele frequency: 2.095469594736181e-5
allele num: 47722
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3376
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-3

VQSLOD
type: SiteQuality
SIO_000300: -9.189000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-2

QD
type: SiteQuality
SIO_000300: 1.693e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

FS
type: SiteQuality
SIO_000300: 5.528e0

DP
type: SiteQuality
SIO_000300: 1.190586e6

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.478633742422002e-4
allele num: 13526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3270
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8350
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 574
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.178965e6

MQ
type: SiteQuality
SIO_000300: 5.962e1

VQSLOD
type: SiteQuality
SIO_000300: 2.88e-1

FS
type: SiteQuality
SIO_000300: 4.33e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.088e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.65e-1

QD
type: SiteQuality
SIO_000300: 1.083e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6438
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13374
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.174858634188778e-5
allele num: 45980
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8138
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3154
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.866e1

QD
type: SiteQuality
SIO_000300: 8.359999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.12e-1

FS
type: SiteQuality
SIO_000300: 2.522e0

MQRankSum
type: SiteQuality
SIO_000300: -5.55e-1

DP
type: SiteQuality
SIO_000300: 1.159466e6

VQSLOD
type: SiteQuality
SIO_000300: -1.962e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6398
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.2465719272002e-4
allele num: 8022
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45356
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3060
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13274
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6440
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.301e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.52e-1

FS
type: SiteQuality
SIO_000300: 5.015e0

MQRankSum
type: SiteQuality
SIO_000300: -4.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.66e-1

QD
type: SiteQuality
SIO_000300: 1.101e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.54e-1

MQ
type: SiteQuality
SIO_000300: 5.756e1

DP
type: SiteQuality
SIO_000300: 1.153022e6

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 556
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7680
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.592356687898089e-4
allele num: 6280
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6242
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2928
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.538646575591159e-5
allele num: 44066
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13068
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.92e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.39e-1

DP
type: SiteQuality
SIO_000300: 1.122825e6

VQSLOD
type: SiteQuality
SIO_000300: -1.469e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.027e0

MQ
type: SiteQuality
SIO_000300: 5.866e1

QD
type: SiteQuality
SIO_000300: 1.053e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.9e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6244
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6280
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2918
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.299376299376299e-4
allele num: 7696
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13072
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44058
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.85e-1

QD
type: SiteQuality
SIO_000300: 9.029999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.91e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.643e0

MQRankSum
type: SiteQuality
SIO_000300: -3.94e-1

FS
type: SiteQuality
SIO_000300: 1.1974e1

MQ
type: SiteQuality
SIO_000300: 5.915e1

DP
type: SiteQuality
SIO_000300: 1.122849e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.94e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.9e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12922
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.318356748736496e-5
allele num: 43134
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6152
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6126
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2842
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

MQ
type: SiteQuality
SIO_000300: 5.934e1

FS
type: SiteQuality
SIO_000300: 1.367e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 4.04e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.01e-1

DP
type: SiteQuality
SIO_000300: 1.110029e6

QD
type: SiteQuality
SIO_000300: 4.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.87e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.532e-1

GenotypeQuality
all individuals: 121
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1215
bin: 5.25e1
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GenotypeQuality
all individuals: 242
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6058
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12798
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.354603249352484e-5
allele num: 42470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2774
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6050
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.293e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.0e-2

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.558e0

MQRankSum
type: SiteQuality
SIO_000300: 7.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.200000000000001e-3

DP
type: SiteQuality
SIO_000300: 1.098026e6

MQ
type: SiteQuality
SIO_000300: 5.983e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.156e0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6056
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12772
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6020
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2782
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.356711915535445e-5
allele num: 42432
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7364
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.43e0

DP
type: SiteQuality
SIO_000300: 1.091866e6

FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.869e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.9e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.298e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.582e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.7e-3

QD
type: SiteQuality
SIO_000300: 6.28e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 7302
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12748
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 42108
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6008
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2740
num of homozygotes: 0

East Asian
type: Population
allele count: 13
allele frequency: 2.170283806343906e-3
allele num: 5990
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

MQRankSum
type: SiteQuality
SIO_000300: 2.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.93e-1

DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 8.179999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.900000000000001e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -9.4e-2

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.979e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 474
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele num: 6562
num of homozygotes: 0

South Asian
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allele frequency: 8.199409642505739e-5
allele num: 12196
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
type: Population
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allele frequency: 0.0e0
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.95e-1

DP
type: SiteQuality
SIO_000300: 1.021706e6

ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
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allele frequency: 8.315316813570597e-5
allele num: 12026
num of homozygotes: 0

Other
type: Population
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allele num: 460
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European (Finnish)
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allele count: 0
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East Asian
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allele frequency: 1.877581674802854e-4
allele num: 5326
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 2.671368274830368e-5
allele num: 37434
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.004745e6

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 2.87e-1

ClippingRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Latino
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
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allele frequency: 1.380670611439842e-3
allele num: 5070
num of homozygotes: 0

East Asian
type: Population
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 34120
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Other
type: Population
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 8.98e-1

QD
type: SiteQuality
SIO_000300: 9.0e0

VQSLOD
type: SiteQuality
SIO_000300: -9.8e-3

FS
type: SiteQuality
SIO_000300: 4.688e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

GenotypeQuality
all individuals: 140
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1072
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5351
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1764
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5054
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31044
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11124
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 8.583690987124463e-4
allele num: 4660
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 406
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.89711e5

QD
type: SiteQuality
SIO_000300: 9.65e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.38e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.61e-1

MQ
type: SiteQuality
SIO_000300: 5.616e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.37e-2

FS
type: SiteQuality
SIO_000300: 1.607e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.41e-1

GenotypeQuality
all individuals: 118
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 616
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31016
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.233139794551139e-4
allele num: 4478
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11116
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5062
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1736
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.964e-1

QD
type: SiteQuality
SIO_000300: 9.74e0

FS
type: SiteQuality
SIO_000300: 3.802e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

DP
type: SiteQuality
SIO_000300: 8.8898e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.635e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.38e-2

GenotypeQuality
all individuals: 1659
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 227
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 554
bin: 6.75e1
variant carriers: 1

African
type: Population
allele count: 10
allele frequency: 2.296738631143776e-3
allele num: 4354
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10852
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4158
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.454947484798231e-5
allele num: 28944
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.92e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.16e-1

DP
type: SiteQuality
SIO_000300: 8.67742e5

BaseQRankSum
type: SiteQuality
SIO_000300: -5.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.66e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.14e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

QD
type: SiteQuality
SIO_000300: 1.141e1

GenotypeQuality
all individuals: 141
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1442
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 364
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4178
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4292
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3914
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 4.698364968990791e-4
allele num: 10642
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.78e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.37e-1

DP
type: SiteQuality
SIO_000300: 8.39352e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.48e-1

QD
type: SiteQuality
SIO_000300: 1.333e1

MQ
type: SiteQuality
SIO_000300: 5.912e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 8.65e-1

GenotypeQuality
all individuals: 1425
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 718
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 3.413487066676781e-4
allele num: 26366
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4052
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3762
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 12
allele frequency: 8.784773060029283e-3
allele num: 1366
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.424830261881668e-4
allele num: 4124
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 366
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10502
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.74e-2

FS
type: SiteQuality
SIO_000300: 1.391e0

VQSLOD
type: SiteQuality
SIO_000300: 3.02e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.85e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

DP
type: SiteQuality
SIO_000300: 8.24934e5

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

QD
type: SiteQuality
SIO_000300: 1.086e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 1753
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.494505494505495e-5
allele num: 18200
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 734
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2450
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2976
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 274
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9306
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2524
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.518e0

DP
type: SiteQuality
SIO_000300: 7.19957e5

MQRankSum
type: SiteQuality
SIO_000300: 1.19e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.75e0

QD
type: SiteQuality
SIO_000300: 6.21e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.532e0

MQ
type: SiteQuality
SIO_000300: 5.746e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.39e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

GenotypeQuality
all individuals: 68
bin: 5.75e1
variant carriers: 56

Other
type: Population
allele count: 4
allele frequency: 2.325581395348837e-2
allele num: 172
num of homozygotes: 0

East Asian
type: Population
allele count: 95
allele frequency: 1.259946949602122e-1
allele num: 754
num of homozygotes: 4

African
type: Population
allele count: 121
allele frequency: 9.33641975308642e-2
allele num: 1296
num of homozygotes: 6

South Asian
type: Population
allele count: 124
allele frequency: 1.558572146807441e-2
allele num: 7956
num of homozygotes: 4

Latino
type: Population
allele count: 18
allele frequency: 3.846153846153846e-2
allele num: 468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 2.439024390243903e-2
allele num: 82
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 53
allele frequency: 7.972322503008424e-3
allele num: 6648
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.437e0

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.571e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

QD
type: SiteQuality
SIO_000300: 1.473e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.95e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

DP
type: SiteQuality
SIO_000300: 5.87974e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.25e-1

GenotypeQuality
all individuals: 264
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 172
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7956
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6648
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 754
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 82
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 468
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.54320987654321e-3
allele num: 1296
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

FS
type: SiteQuality
SIO_000300: 1.437e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.571e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.25e-1

DP
type: SiteQuality
SIO_000300: 5.87974e5

QD
type: SiteQuality
SIO_000300: 1.473e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.95e0

GenotypeQuality
all individuals: 189
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 172
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6648
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 5.027652086475615e-4
allele num: 7956
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1296
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 754
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 82
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.95e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.571e-1

DP
type: SiteQuality
SIO_000300: 5.87974e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.25e-1

FS
type: SiteQuality
SIO_000300: 1.437e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.473e1

South Asian
type: Population
allele count: 1
allele frequency: 1.332267519317879e-4
allele num: 7506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.164e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

MQRankSum
type: SiteQuality
SIO_000300: -1.59e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.145e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.03e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.9e0

DP
type: SiteQuality
SIO_000300: 1.39283e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.015e0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2722
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.237e0

QD
type: SiteQuality
SIO_000300: 1.574e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.13e-2

DP
type: SiteQuality
SIO_000300: 1.39672e5

VQSLOD
type: SiteQuality
SIO_000300: -1.216e0

FS
type: SiteQuality
SIO_000300: 9.542e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.15e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

Other
type: Population
allele count: 57
allele frequency: 4.830508474576271e-1
allele num: 118
num of homozygotes: 17

African
type: Population
allele count: 77
allele frequency: 3.85e-1
allele num: 200
num of homozygotes: 13

Latino
type: Population
allele count: 39
allele frequency: 4.239130434782609e-1
allele num: 92
num of homozygotes: 10

South Asian
type: Population
allele count: 3809
allele frequency: 5.088164573871227e-1
allele num: 7486
num of homozygotes: 999

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.967e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.0e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.02e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.532e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.19e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.69e-1

DP
type: SiteQuality
SIO_000300: 2.06239e5

BaseQRankSum
type: SiteQuality
SIO_000300: -3.432e0

East Asian
type: Population
allele count: 49
allele frequency: 3.602941176470588e-1
allele num: 136
num of homozygotes: 6

Other
type: Population
allele count: 5
allele frequency: 4.23728813559322e-2
allele num: 118
num of homozygotes: 0

African
type: Population
allele count: 20
allele frequency: 1.030927835051546e-1
allele num: 194
num of homozygotes: 0

South Asian
type: Population
allele count: 39
allele frequency: 5.293159609120521e-3
allele num: 7368
num of homozygotes: 1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.87e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.57e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.618e1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.05e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.96e0

DP
type: SiteQuality
SIO_000300: 1.41192e5

ClippingRankSum
type: SiteQuality
SIO_000300: 9.1e-2

GenotypeQuality
all individuals: 239
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1734
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 529
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1127
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1142
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21731
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2412
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 572
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.270325203252033e-4
allele num: 7872
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 350
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 8078
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.36e-1

BaseQRankSum
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SIO_000300: -3.656e0

VQSLOD
type: SiteQuality
SIO_000300: -5.78e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.115e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.92e-2

MQ
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SIO_000300: 5.655e1

QD
type: SiteQuality
SIO_000300: 9.33e0

DP
type: SiteQuality
SIO_000300: 3.99527e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.76e0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

South Asian
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allele frequency: 1.26806999746386e-4
allele num: 7886
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 8192
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 354
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 638
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2602
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.32e-1

QD
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DP
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VQSLOD
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FS
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SIO_000300: 0.0e0

ClippingRankSum
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SIO_000300: 7.12e-1

MQ
type: SiteQuality
SIO_000300: 5.556e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.83e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.607e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.7e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.636363636363636e-4
allele num: 2750
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 672
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 392
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.28515e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.47e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.34e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: -9.15e-1

VQSLOD
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SIO_000300: -2.35e0

InbreedingCoeff
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SIO_000300: -6.89e-2

MQ
type: SiteQuality
SIO_000300: 5.783e1

QD
type: SiteQuality
SIO_000300: 8.6e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2752
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.528445006321112e-4
allele num: 7910
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 674
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.41e0

MQRankSum
type: SiteQuality
SIO_000300: 1.11e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.75e-1

DP
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SIO_000300: 4.29758e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.25e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.89e-2

QD
type: SiteQuality
SIO_000300: 1.258e1

FS
type: SiteQuality
SIO_000300: 1.4645e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

MQ
type: SiteQuality
SIO_000300: 5.755e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 4
allele frequency: 5.054334091483447e-4
allele num: 7914
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 684
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e0

BaseQRankSum
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MQRankSum
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SIO_000300: -1.45e-1

MQ
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VQSLOD
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DP
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InbreedingCoeff
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SIO_000300: -6.97e-2

FS
type: SiteQuality
SIO_000300: 1.932e0

ReadPosRankSum
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SIO_000300: -2.2e-1

QD
type: SiteQuality
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 7918
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 704
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.142334932602239e-4
allele num: 8754
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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ReadPosRankSum
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FS
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VQSLOD
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QD
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ClippingRankSum
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MQ
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MQRankSum
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InbreedingCoeff
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DP
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BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 704
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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Other
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allele frequency: 0.0e0
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European (Finnish)
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African
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QD
type: SiteQuality
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BaseQRankSum
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MQ
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InbreedingCoeff
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FS
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DP
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MQRankSum
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
type: Population
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Latino
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East Asian
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African
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num of homozygotes: 0

European (Non-Finnish)
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South Asian
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ReadPosRankSum
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FS
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VQSLOD
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MQRankSum
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ClippingRankSum
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DP
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QD
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BaseQRankSum
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InbreedingCoeff
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MQ
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele frequency: 0.0e0
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European (Finnish)
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African
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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num of homozygotes: 0

South Asian
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ReadPosRankSum
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ClippingRankSum
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MQ
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VQSLOD
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BaseQRankSum
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FS
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DP
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MQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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South Asian
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East Asian
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African
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Other
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FS
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MQ
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ReadPosRankSum
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VQSLOD
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MQRankSum
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BaseQRankSum
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DP
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ClippingRankSum
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InbreedingCoeff
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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European (Finnish)
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Other
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Latino
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South Asian
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QD
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BaseQRankSum
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FS
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MQ
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

South Asian
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Latino
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European (Non-Finnish)
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African
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East Asian
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Other
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FS
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ClippingRankSum
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DP
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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QD
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VQSLOD
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MQ
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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Other
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African
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South Asian
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East Asian
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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VQSLOD
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BaseQRankSum
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QD
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MQ
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FS
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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European (Finnish)
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South Asian
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African
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Other
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East Asian
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DP
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FS
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MQ
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

European (Non-Finnish)
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 1.005747126436782e-2
allele num: 696
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2820
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 5.10204081632653e-3
allele num: 196
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.13e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: 2.05e0

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

DP
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SIO_000300: 4.18025e5

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.049999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.706e-1

QD
type: SiteQuality
SIO_000300: 1.301e1

MQ
type: SiteQuality
SIO_000300: 5.841e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7920
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 672
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.558718861209965e-4
allele num: 2810
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.53e-1

MQRankSum
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SIO_000300: 9.29e-1

FS
type: SiteQuality
SIO_000300: 1.288e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.16e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -8.3e-2

QD
type: SiteQuality
SIO_000300: 1.201e1

MQ
type: SiteQuality
SIO_000300: 5.591e1

ClippingRankSum
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SIO_000300: 1.09e0

DP
type: SiteQuality
SIO_000300: 4.10467e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.59e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 668
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2814
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.439024390243902e-3
allele num: 410
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7920
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.140000000000001e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

QD
type: SiteQuality
SIO_000300: 1.153e1

DP
type: SiteQuality
SIO_000300: 4.09113e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.854e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.89e-1

GenotypeDepth
all individuals: 1846
bin: 3.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 790
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variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8872
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.262945188178833e-4
allele num: 7918
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2804
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.78e0

DP
type: SiteQuality
SIO_000300: 4.056e5

ClippingRankSum
type: SiteQuality
SIO_000300: 3.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.65e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.618e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.52e0

MQRankSum
type: SiteQuality
SIO_000300: 2.5e0

MQ
type: SiteQuality
SIO_000300: 5.699e1

FS
type: SiteQuality
SIO_000300: 8.331e0

QD
type: SiteQuality
SIO_000300: 1.423e1

GenotypeDepth
all individuals: 23
bin: 8.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1997
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variant carriers: 0

GenotypeDepth
all individuals: 937
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variant carriers: 3

GenotypeDepth
all individuals: 577
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variant carriers: 2

GenotypeDepth
all individuals: 16
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variant carriers: 0

GenotypeDepth
all individuals: 192
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variant carriers: 7

GenotypeDepth
all individuals: 32
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variant carriers: 1

GenotypeDepth
all individuals: 1842
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GenotypeQuality
all individuals: 789
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GenotypeQuality
all individuals: 481
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GenotypeQuality
all individuals: 565
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GenotypeQuality
all individuals: 77
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
all individuals: 270
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 41
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GenotypeQuality
all individuals: 2563
bin: 9.75e1
variant carriers: 35

African
type: Population
allele count: 36
allele frequency: 1.282965074839629e-2
allele num: 2806
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8864
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7916
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.76e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

DP
type: SiteQuality
SIO_000300: 4.04883e5

ClippingRankSum
type: SiteQuality
SIO_000300: -2.76e-1

MQ
type: SiteQuality
SIO_000300: 5.873e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.39e-1

FS
type: SiteQuality
SIO_000300: 1.819e0

QD
type: SiteQuality
SIO_000300: 1.316e1

VQSLOD
type: SiteQuality
SIO_000300: 8.87e-1

GenotypeDepth
all individuals: 1991
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 579
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2387
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variant carriers: 0

GenotypeDepth
all individuals: 64
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variant carriers: 3

GenotypeDepth
all individuals: 203
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GenotypeDepth
all individuals: 72
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GenotypeDepth
all individuals: 119
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GenotypeDepth
all individuals: 302
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GenotypeQuality
all individuals: 5544
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GenotypeQuality
all individuals: 875
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GenotypeQuality
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GenotypeQuality
all individuals: 640
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GenotypeQuality
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GenotypeQuality
all individuals: 50
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2551
bin: 9.75e1
variant carriers: 3

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8880
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.788835564536499e-4
allele num: 7918
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
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MQ
type: SiteQuality
SIO_000300: 5.679e1

DP
type: SiteQuality
SIO_000300: 4.03841e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.42e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 9.340000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.020999999999999e-1

QD
type: SiteQuality
SIO_000300: 8.710000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: -2.777e0

FS
type: SiteQuality
SIO_000300: 1.852e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

GenotypeDepth
all individuals: 72
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variant carriers: 58

GenotypeDepth
all individuals: 1462
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variant carriers: 99

GenotypeDepth
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variant carriers: 139

GenotypeDepth
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variant carriers: 64

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 93

GenotypeDepth
all individuals: 2173
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GenotypeQuality
all individuals: 45
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GenotypeQuality
all individuals: 262
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GenotypeQuality
all individuals: 37
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variant carriers: 5

GenotypeQuality
all individuals: 95
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GenotypeQuality
all individuals: 597
bin: 1.25e1
variant carriers: 251

GenotypeQuality
all individuals: 1686
bin: 6.25e1
variant carriers: 68

GenotypeQuality
all individuals: 367
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variant carriers: 95

GenotypeQuality
all individuals: 34
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GenotypeQuality
all individuals: 556
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variant carriers: 20

GenotypeQuality
all individuals: 7670
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3922

GenotypeQuality
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GenotypeQuality
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variant carriers: 618

GenotypeQuality
all individuals: 517
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GenotypeQuality
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GenotypeQuality
all individuals: 445
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GenotypeQuality
all individuals: 172
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variant carriers: 96

GenotypeQuality
all individuals: 323
bin: 8.75e1
variant carriers: 25

GenotypeQuality
all individuals: 383
bin: 9.25e1
variant carriers: 20

European (Non-Finnish)
type: Population
allele count: 2296
allele frequency: 2.576879910213243e-1
allele num: 8910
num of homozygotes: 289

Other
type: Population
allele count: 37
allele frequency: 1.907216494845361e-1
allele num: 194
num of homozygotes: 2

Latino
type: Population
allele count: 82
allele frequency: 2.009803921568628e-1
allele num: 408
num of homozygotes: 7

South Asian
type: Population
allele count: 1603
allele frequency: 2.026036400404449e-1
allele num: 7912
num of homozygotes: 193

African
type: Population
allele count: 426
allele frequency: 1.523605150214592e-1
allele num: 2796
num of homozygotes: 42

East Asian
type: Population
allele count: 38
allele frequency: 5.900621118012422e-2
allele num: 644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 15
allele frequency: 3.0e-1
allele num: 50
num of homozygotes: 2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.875e1

FS
type: SiteQuality
SIO_000300: 5.25e-1

QD
type: SiteQuality
SIO_000300: 1.416e1

VQSLOD
type: SiteQuality
SIO_000300: 3.16e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.64e-2

DP
type: SiteQuality
SIO_000300: 7.51405e5

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2668
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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South Asian
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European (Finnish)
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allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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East Asian
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Other
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QD
type: SiteQuality
SIO_000300: 1.148e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e0

DP
type: SiteQuality
SIO_000300: 1.60457e5

MQRankSum
type: SiteQuality
SIO_000300: -1.806e0

MQ
type: SiteQuality
SIO_000300: 5.942e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
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SIO_000300: -2.237e0

InbreedingCoeff
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SIO_000300: -3.73e-2

ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2716
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 1.332267519317879e-4
allele num: 7506
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 5.892e1

MQRankSum
type: SiteQuality
SIO_000300: 4.63e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.8e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.812e-1

DP
type: SiteQuality
SIO_000300: 1.61911e5

ClippingRankSum
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SIO_000300: 5.73e-1

BaseQRankSum
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SIO_000300: -3.239e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.76e-2

FS
type: SiteQuality
SIO_000300: 2.02e0

QD
type: SiteQuality
SIO_000300: 1.21e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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