16-767189-CG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 767189
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 767188
    reference: chr 16
allele count: 1
allele frequency: 1.471194021067498e-5
allele num: 67972
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000103260
  ensembl protein: ENSP00000455068
  ensembl transcript: ENST00000568223
  gene symbol: METRN
  hgvsc: ENST00000568223.2:c.688delG
  hgvsp: ENSP00000455068.1:p.Asp230ThrfsTer4
  variant of: http://identifiers.org/hgnc/14151
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000103260
  ensembl protein: ENSP00000219542
  ensembl transcript: ENST00000219542
  gene symbol: METRN
  hgvsc: ENST00000219542.3:c.*154delG
  variant of: http://identifiers.org/hgnc/14151
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103260
  ensembl transcript: ENST00000564661
  gene symbol: METRN
  hgvsc: ENST00000564661.1:n.550delG
  variant of: http://identifiers.org/hgnc/14151
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103260
  ensembl protein: ENSP00000456647
  ensembl transcript: ENST00000570132
  gene symbol: METRN
  hgvsc: ENST00000570132.1:c.*186delG
  variant of: http://identifiers.org/hgnc/14151
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103260
  ensembl protein: ENSP00000459900
  ensembl transcript: ENST00000567076
  gene symbol: METRN
  hgvsc: ENST00000567076.1:c.469+58delG
  variant of: http://identifiers.org/hgnc/14151
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000103260
  ensembl protein: ENSP00000457702
  ensembl transcript: ENST00000568415
  gene symbol: METRN
  hgvsc: ENST00000568415.1:c.289delG
  hgvsp: ENSP00000457702.1:p.Asp97ThrfsTer4
  variant of: http://identifiers.org/hgnc/14151
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3922
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22584
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2827
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15407
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11206
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3581
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1469
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 789
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3079
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30933
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2931
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1186
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3043
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asp230ThrfsTer4
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: CG
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

16-767189-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 767189
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 767189
    reference: chr 16
allele count: 3
allele frequency: 4.413582063202495e-5
allele num: 67972
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103260
  ensembl transcript: ENST00000564661
  gene symbol: METRN
  hgvsc: ENST00000564661.1:n.546C>T
  variant of: http://identifiers.org/hgnc/14151
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103260
  ensembl protein: ENSP00000456647
  ensembl transcript: ENST00000570132
  gene symbol: METRN
  hgvsc: ENST00000570132.1:c.*182C>T
  variant of: http://identifiers.org/hgnc/14151
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103260
  ensembl protein: ENSP00000457702
  ensembl transcript: ENST00000568415
  gene symbol: METRN
  hgvsc: ENST00000568415.1:c.285C>T
  hgvsp: ENST00000568415.1:c.285C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14151
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000103260
  ensembl protein: ENSP00000219542
  ensembl transcript: ENST00000219542
  gene symbol: METRN
  hgvsc: ENST00000219542.3:c.*150C>T
  variant of: http://identifiers.org/hgnc/14151
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103260
  ensembl protein: ENSP00000455068
  ensembl transcript: ENST00000568223
  gene symbol: METRN
  hgvsc: ENST00000568223.2:c.684C>T
  hgvsp: ENST00000568223.2:c.684C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14151
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103260
  ensembl protein: ENSP00000459900
  ensembl transcript: ENST00000567076
  gene symbol: METRN
  hgvsc: ENST00000567076.1:c.469+54C>T
  variant of: http://identifiers.org/hgnc/14151
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3581
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2827
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11206
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22584
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15407
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3922
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 789
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1186
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2931
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12563
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 3043
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 30933
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser228Ser
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD

16-767190-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 767190
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 767190
    reference: chr 16
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103260
  ensembl protein: ENSP00000459900
  ensembl transcript: ENST00000567076
  gene symbol: METRN
  hgvsc: ENST00000567076.1:c.469+55G>C
  variant of: http://identifiers.org/hgnc/14151
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000103260
  ensembl protein: ENSP00000219542
  ensembl transcript: ENST00000219542
  gene symbol: METRN
  hgvsc: ENST00000219542.3:c.*151G>C
  variant of: http://identifiers.org/hgnc/14151
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103260
  ensembl protein: ENSP00000457702
  ensembl transcript: ENST00000568415
  gene symbol: METRN
  hgvsc: ENST00000568415.1:c.286G>C
  hgvsp: ENSP00000457702.1:p.Gly96Arg
  variant of: http://identifiers.org/hgnc/14151
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103260
  ensembl protein: ENSP00000456647
  ensembl transcript: ENST00000570132
  gene symbol: METRN
  hgvsc: ENST00000570132.1:c.*183G>C
  variant of: http://identifiers.org/hgnc/14151
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103260
  ensembl transcript: ENST00000564661
  gene symbol: METRN
  hgvsc: ENST00000564661.1:n.547G>C
  variant of: http://identifiers.org/hgnc/14151
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103260
  ensembl protein: ENSP00000455068
  ensembl transcript: ENST00000568223
  gene symbol: METRN
  hgvsc: ENST00000568223.2:c.685G>C
  hgvsp: ENSP00000455068.1:p.Gly229Arg
  variant of: http://identifiers.org/hgnc/14151
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3446
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10755
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3893
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15412
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30921
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2910
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3079
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 877
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3224
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 781
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11352
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1435
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly229Arg
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD

17-76166969-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76166969
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76166969
    reference: chr 17
allele count: 1
allele frequency: 8.243887157672586e-6
allele num: 121302
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.178G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.171G>A
  hgvsp: ENSP00000225777.2:p.Met57Ile
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.3G>A
  hgvsp: ENSP00000465005.1:p.Met1?
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.171G>A
  hgvsp: ENSP00000465678.1:p.Met57Ile
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1205G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*34G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.171G>A
  hgvsp: ENSP00000467600.1:p.Met57Ile
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-622G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.170G>A
  hgvsp: ENSP00000466204.1:p.Met57Ile
  variant of: http://identifiers.org/hgnc/11499
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4831
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1495
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9073
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12710
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3436
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23664
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2303
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1845
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD

17-76166975-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76166975
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76166975
    reference: chr 17
allele count: 311
allele frequency: 2.563975728795674e-3
allele num: 121296
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1211C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.184C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.177C>T
  hgvsp: ENST00000225777.3:c.177C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-616C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*40C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.177C>T
  hgvsp: ENST00000585591.1:c.177C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.176C>T
  hgvsp: ENST00000589168.1:c.176C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.177C>T
  hgvsp: ENST00000588282.1:c.177C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.9C>T
  hgvsp: ENST00000590201.1:c.9C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3419
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 9.75e1
  variant carriers: 295
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12645
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9031
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23546
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4816
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2296
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4324
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3522
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Cys59Cys
num of homozygotes: 3
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

17-76166976-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76166976
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76166976
    reference: chr 17
allele count: 4
allele frequency: 3.297500494625074e-5
allele num: 121304
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-615G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*41G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.185G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.10G>A
  hgvsp: ENSP00000465005.1:p.Val4Met
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.177G>A
  hgvsp: ENSP00000466204.1:p.Val60Met
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.178G>A
  hgvsp: ENSP00000467600.1:p.Val60Met
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1212G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.178G>A
  hgvsp: ENSP00000465678.1:p.Val60Met
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.178G>A
  hgvsp: ENSP00000225777.2:p.Val60Met
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4859
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3471
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9066
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23548
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12671
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val60Met
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD

17-76166985-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76166985
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76166985
    reference: chr 17
allele count: 1
allele frequency: 8.24334350012365e-6
allele num: 121310
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.19C>T
  hgvsp: ENSP00000465005.1:p.Arg7Cys
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-606C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.187C>T
  hgvsp: ENSP00000467600.1:p.Arg63Cys
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*50C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.186C>T
  hgvsp: ENSP00000466204.1:p.Arg63Cys
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.187C>T
  hgvsp: ENSP00000465678.1:p.Arg63Cys
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.187C>T
  hgvsp: ENSP00000225777.2:p.Arg63Cys
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.194C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1221C>T
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9067
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4859
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12692
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23532
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2343
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3471
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26748
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg63Cys
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

17-76166986-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76166986
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76166986
    reference: chr 17
allele count: 1
allele frequency: 8.243207596940122e-6
allele num: 121312
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.188G>A
  hgvsp: ENSP00000465678.1:p.Arg63His
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.187G>A
  hgvsp: ENSP00000466204.1:p.Arg63His
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.195G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.188G>A
  hgvsp: ENSP00000467600.1:p.Arg63His
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.188G>A
  hgvsp: ENSP00000225777.2:p.Arg63His
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*51G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-605G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1222G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.20G>A
  hgvsp: ENSP00000465005.1:p.Arg7His
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3470
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9065
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12695
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4859
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23528
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3464
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26751
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg63His
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

17-76166986-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76166986
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76166986
    reference: chr 17
allele count: 1
allele frequency: 8.243207596940122e-6
allele num: 121312
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.187G>T
  hgvsp: ENSP00000466204.1:p.Arg63Leu
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.195G>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.188G>T
  hgvsp: ENSP00000465678.1:p.Arg63Leu
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.20G>T
  hgvsp: ENSP00000465005.1:p.Arg7Leu
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.188G>T
  hgvsp: ENSP00000467600.1:p.Arg63Leu
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.188G>T
  hgvsp: ENSP00000225777.2:p.Arg63Leu
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1222G>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*51G>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-605G>T
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23528
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12695
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9065
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4859
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3470
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4344
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7243
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg63Leu
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

17-76166990-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76166990
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76166990
    reference: chr 17
allele count: 1
allele frequency: 8.243207596940122e-6
allele num: 121312
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.199C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1226C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-601C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.192C>T
  hgvsp: ENST00000588282.1:c.192C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.24C>T
  hgvsp: ENST00000590201.1:c.24C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.192C>T
  hgvsp: ENST00000225777.3:c.192C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.192C>T
  hgvsp: ENST00000585591.1:c.192C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*55C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.191C>T
  hgvsp: ENST00000589168.1:c.191C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23523
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9064
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12700
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4858
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3470
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3464
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4347
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10881
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Asn64Asn
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

17-76166991-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76166991
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76166991
    reference: chr 17
allele count: 1
allele frequency: 8.243207596940122e-6
allele num: 121312
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-600G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.192G>A
  hgvsp: ENSP00000466204.1:p.Glu65Lys
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.200G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.193G>A
  hgvsp: ENSP00000225777.2:p.Glu65Lys
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.25G>A
  hgvsp: ENSP00000465005.1:p.Glu9Lys
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.193G>A
  hgvsp: ENSP00000467600.1:p.Glu65Lys
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*56G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1227G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.193G>A
  hgvsp: ENSP00000465678.1:p.Glu65Lys
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4858
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23517
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9070
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3473
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12703
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10880
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Glu65Lys
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD

17-76166993-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76166993
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76166993
    reference: chr 17
allele count: 3
allele frequency: 2.472799208704253e-5
allele num: 121320
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.195G>T
  hgvsp: ENSP00000225777.2:p.Glu65Asp
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*58G>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.195G>T
  hgvsp: ENSP00000467600.1:p.Glu65Asp
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.202G>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.195G>T
  hgvsp: ENSP00000465678.1:p.Glu65Asp
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.194G>T
  hgvsp: ENSP00000466204.1:p.Glu65Asp
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1229G>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-598G>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.27G>T
  hgvsp: ENSP00000465005.1:p.Glu9Asp
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23514
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12707
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3470
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4858
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9070
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu65Asp
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

17-76166999-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76166999
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76166999
    reference: chr 17
allele count: 2
allele frequency: 1.648614339647526e-5
allele num: 121314
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.200C>T
  hgvsp: ENST00000589168.1:c.200C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-592C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1235C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.201C>T
  hgvsp: ENST00000588282.1:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.201C>T
  hgvsp: ENST00000585591.1:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.208C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.201C>T
  hgvsp: ENST00000225777.3:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.33C>T
  hgvsp: ENST00000590201.1:c.33C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*64C>T
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3481
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9072
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23484
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12725
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2343
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4862
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala67Ala
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

17-76167001-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167001
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167001
    reference: chr 17
allele count: 8
allele frequency: 6.594131223211343e-5
allele num: 121320
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.203G>A
  hgvsp: ENSP00000467600.1:p.Cys68Tyr
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1237G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.203G>A
  hgvsp: ENSP00000225777.2:p.Cys68Tyr
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.202G>A
  hgvsp: ENSP00000466204.1:p.Cys68Tyr
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.203G>A
  hgvsp: ENSP00000465678.1:p.Cys68Tyr
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.210G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-590G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*66G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.35G>A
  hgvsp: ENSP00000465005.1:p.Cys12Tyr
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23489
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9074
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4864
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12724
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3479
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26760
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2426
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Cys68Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

17-76167003-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167003
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167003
    reference: chr 17
allele count: 1
allele frequency: 8.24279991427488e-6
allele num: 121318
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.204C>T
  hgvsp: ENSP00000466204.1:p.Arg69Cys
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.205C>T
  hgvsp: ENSP00000467600.1:p.Arg69Cys
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*68C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.212C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.205C>T
  hgvsp: ENSP00000225777.2:p.Arg69Cys
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.205C>T
  hgvsp: ENSP00000465678.1:p.Arg69Cys
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.37C>T
  hgvsp: ENSP00000465005.1:p.Arg13Cys
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1239C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-588C>T
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23491
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3482
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9073
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12726
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4863
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4340
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1851
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg69Cys
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: African
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

17-76167004-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167004
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167004
    reference: chr 17
allele count: 1
allele frequency: 8.24279991427488e-6
allele num: 121318
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*69G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.38G>A
  hgvsp: ENSP00000465005.1:p.Arg13His
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1240G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.213G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.206G>A
  hgvsp: ENSP00000467600.1:p.Arg69His
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.205G>A
  hgvsp: ENSP00000466204.1:p.Arg69His
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.206G>A
  hgvsp: ENSP00000225777.2:p.Arg69His
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-587G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.206G>A
  hgvsp: ENSP00000465678.1:p.Arg69His
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3483
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23489
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9078
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4863
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12722
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1851
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg69His
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: African
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

17-76167015-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167015
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167015
    reference: chr 17
allele count: 1
allele frequency: 8.242935804015958e-6
allele num: 121316
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.216G>C
  hgvsp: ENSP00000466204.1:p.Ala73Pro
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-576G>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.217G>C
  hgvsp: ENSP00000225777.2:p.Ala73Pro
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.224G>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.217G>C
  hgvsp: ENSP00000467600.1:p.Ala73Pro
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1251G>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*80G>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.49G>C
  hgvsp: ENSP00000465005.1:p.Ala17Pro
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.217G>C
  hgvsp: ENSP00000465678.1:p.Ala73Pro
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3483
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23482
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12735
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4866
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2345
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9072
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4343
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1851
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala73Pro
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: QD

17-76167019-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167019
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167019
    reference: chr 17
allele count: 3
allele frequency: 2.472839974282464e-5
allele num: 121318
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.220T>C
  hgvsp: ENSP00000466204.1:p.Ile74Thr
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.228T>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.221T>C
  hgvsp: ENSP00000467600.1:p.Ile74Thr
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.221T>C
  hgvsp: ENSP00000465678.1:p.Ile74Thr
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.221T>C
  hgvsp: ENSP00000225777.2:p.Ile74Thr
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*84T>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.53T>C
  hgvsp: ENSP00000465005.1:p.Ile18Thr
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1255T>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-572T>C
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12730
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9078
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4864
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3483
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2343
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23478
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3470
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4345
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ile74Thr
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

17-76167020-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167020
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167020
    reference: chr 17
allele count: 75
allele frequency: 6.182099935706161e-4
allele num: 121318
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.54C>T
  hgvsp: ENST00000590201.1:c.54C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.222C>T
  hgvsp: ENST00000585591.1:c.222C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.222C>T
  hgvsp: ENST00000588282.1:c.222C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.229C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*85C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-571C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1256C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.222C>T
  hgvsp: ENST00000225777.3:c.222C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.221C>T
  hgvsp: ENST00000589168.1:c.221C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3479
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9071
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12714
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4860
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 9.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23440
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ile74Ile
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

17-76167021-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167021
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167021
    reference: chr 17
allele count: 1
allele frequency: 8.242664029014178e-6
allele num: 121320
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.223G>A
  hgvsp: ENSP00000225777.2:p.Gly75Arg
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-570G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*86G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.230G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.55G>A
  hgvsp: ENSP00000465005.1:p.Gly19Arg
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.223G>A
  hgvsp: ENSP00000467600.1:p.Gly75Arg
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.223G>A
  hgvsp: ENSP00000465678.1:p.Gly75Arg
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.222G>A
  hgvsp: ENSP00000466204.1:p.Gly75Arg
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1257G>A
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3487
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23447
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9085
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12720
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4869
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2348
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3534
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2426
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gly75Arg
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP

17-76167023-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167023
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167023
    reference: chr 17
allele count: 1
allele frequency: 8.242528148233626e-6
allele num: 121322
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.225G>A
  hgvsp: ENST00000225777.3:c.225G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*88G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.57G>A
  hgvsp: ENST00000590201.1:c.57G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-568G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.224G>A
  hgvsp: ENST00000589168.1:c.224G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.232G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.225G>A
  hgvsp: ENST00000585591.1:c.225G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.225G>A
  hgvsp: ENST00000588282.1:c.225G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1259G>A
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23445
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3487
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4870
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12724
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9083
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4345
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2427
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly75Gly
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

17-76167024-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167024
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167024
    reference: chr 17
allele count: 1
allele frequency: 8.242528148233626e-6
allele num: 121322
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-567G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.226G>A
  hgvsp: ENSP00000225777.2:p.Val76Met
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.58G>A
  hgvsp: ENSP00000465005.1:p.Val20Met
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.233G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1260G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.226G>A
  hgvsp: ENSP00000465678.1:p.Val76Met
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*89G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.226G>A
  hgvsp: ENSP00000467600.1:p.Val76Met
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.225G>A
  hgvsp: ENSP00000466204.1:p.Val76Met
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12719
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3487
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4871
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23448
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9085
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26734
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2427
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val76Met
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD

17-76167032-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167032
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167032
    reference: chr 17
allele count: 9
allele frequency: 7.418030760100886e-5
allele num: 121326
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1268C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.233C>T
  hgvsp: ENST00000589168.1:c.233C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-559C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.66C>T
  hgvsp: ENST00000590201.1:c.66C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.234C>T
  hgvsp: ENST00000585591.1:c.234C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.234C>T
  hgvsp: ENST00000225777.3:c.234C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.234C>T
  hgvsp: ENST00000588282.1:c.234C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.241C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*97C>T
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3485
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12721
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4873
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9081
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23429
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10940
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala78Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

17-76167037-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167037
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167037
    reference: chr 17
allele count: 2
allele frequency: 1.648396933981703e-5
allele num: 121330
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.239T>C
  hgvsp: ENSP00000465678.1:p.Leu80Pro
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.246T>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.239T>C
  hgvsp: ENSP00000225777.2:p.Leu80Pro
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.238T>C
  hgvsp: ENSP00000466204.1:p.Leu80Pro
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*102T>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1273T>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-554T>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.71T>C
  hgvsp: ENSP00000465005.1:p.Leu24Pro
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.239T>C
  hgvsp: ENSP00000467600.1:p.Leu80Pro
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23423
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4875
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3485
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12721
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9082
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2352
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26709
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu80Pro
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP

17-76167038-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167038
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167038
    reference: chr 17
allele count: 1
allele frequency: 8.242256400112095e-6
allele num: 121326
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.240G>A
  hgvsp: ENST00000585591.1:c.240G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.247G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.240G>A
  hgvsp: ENST00000225777.3:c.240G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-553G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.240G>A
  hgvsp: ENST00000588282.1:c.240G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.239G>A
  hgvsp: ENST00000589168.1:c.239G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*103G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1274G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.72G>A
  hgvsp: ENST00000590201.1:c.72G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3485
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12720
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4875
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23416
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9083
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1855
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2431
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu80Leu
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

17-76167044-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167044
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167044
    reference: chr 17
allele count: 3
allele frequency: 2.47255464345762e-5
allele num: 121332
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.246G>A
  hgvsp: ENST00000225777.3:c.246G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.245G>A
  hgvsp: ENST00000589168.1:c.245G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.253G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.246G>A
  hgvsp: ENST00000585591.1:c.246G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-547G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.246G>A
  hgvsp: ENST00000588282.1:c.246G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.78G>A
  hgvsp: ENST00000590201.1:c.78G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*109G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1280G>A
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9084
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3488
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23407
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4874
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12719
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3534
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser82Ser
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

17-76167046-CCTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167046
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167043
    reference: chr 17
allele count: 10
allele frequency: 8.242256400112094e-5
allele num: 121326
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-538_100-536delCTT
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.255_257delCTT
  hgvsp: ENSP00000465678.1:p.Phe85del
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.87_89delCTT
  hgvsp: ENSP00000465005.1:p.Phe29del
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*118_*120delCTT
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.262_264delCTT
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.255_257delCTT
  hgvsp: ENSP00000225777.2:p.Phe85del
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.255_257delCTT
  hgvsp: ENSP00000467600.1:p.Phe85del
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.254_256delCTT
  hgvsp: ENSP00000466204.1:p.Phe85del
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1289_1291delCTT
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23402
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12713
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4872
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9084
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2355
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3489
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3475
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Phe85del
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: CCTT
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

17-76167047-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167047
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167047
    reference: chr 17
allele count: 13873
allele frequency: 1.143636753334542e-1
allele num: 121306
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.249C>T
  hgvsp: ENST00000585591.1:c.249C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-544C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*112C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.248C>T
  hgvsp: ENST00000589168.1:c.248C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.256C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.249C>T
  hgvsp: ENST00000588282.1:c.249C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1283C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.81C>T
  hgvsp: ENST00000590201.1:c.81C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.249C>T
  hgvsp: ENST00000225777.3:c.249C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 9.25e1
  variant carriers: 816
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 8.25e1
  variant carriers: 715
genotype depth: GenotypeDepth
  all individuals: 17475
  bin: 2.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 7.75e1
  variant carriers: 625
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 7.25e1
  variant carriers: 519
genotype depth: GenotypeDepth
  all individuals: 4193
  bin: 3.75e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 5.25e1
  variant carriers: 208
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 6.25e1
  variant carriers: 359
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 5.75e1
  variant carriers: 268
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2213
  bin: 4.75e1
  variant carriers: 194
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10280
  bin: 2.75e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 6.75e1
  variant carriers: 432
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3148
  bin: 4.25e1
  variant carriers: 129
genotype depth: GenotypeDepth
  all individuals: 7706
  bin: 9.75e1
  variant carriers: 7617
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 8.75e1
  variant carriers: 731
genotype depth: GenotypeDepth
  all individuals: 7343
  bin: 3.25e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala83Ala
num of homozygotes: 975
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP

17-76167053-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167053
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167053
    reference: chr 17
allele count: 1
allele frequency: 8.241712957621112e-6
allele num: 121334
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.262C>G
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.255C>G
  hgvsp: ENSP00000467600.1:p.Phe85Leu
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*118C>G
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1289C>G
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.254C>G
  hgvsp: ENSP00000466204.1:p.Phe85Leu
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.255C>G
  hgvsp: ENSP00000465678.1:p.Phe85Leu
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.87C>G
  hgvsp: ENSP00000465005.1:p.Phe29Leu
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.255C>G
  hgvsp: ENSP00000225777.2:p.Phe85Leu
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-538C>G
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5682
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3569
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4654
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17932
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9012
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2603
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12175
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Phe85Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD

17-76167055-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167055
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167055
    reference: chr 17
allele count: 1
allele frequency: 8.241712957621112e-6
allele num: 121334
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.257T>C
  hgvsp: ENSP00000465678.1:p.Leu86Ser
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-536T>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.257T>C
  hgvsp: ENSP00000467600.1:p.Leu86Ser
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1291T>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.264T>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.257T>C
  hgvsp: ENSP00000225777.2:p.Leu86Ser
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.256T>C
  hgvsp: ENSP00000466204.1:p.Leu86Ser
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.89T>C
  hgvsp: ENSP00000465005.1:p.Leu30Ser
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*120T>C
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2603
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9010
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3571
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5682
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17930
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12173
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4652
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4195
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu86Ser
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD

17-76167059-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167059
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167059
    reference: chr 17
allele count: 1
allele frequency: 8.241984669908513e-6
allele num: 121330
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1295G>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.261G>C
  hgvsp: ENST00000588282.1:c.261G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.93G>C
  hgvsp: ENST00000590201.1:c.93G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.261G>C
  hgvsp: ENST00000585591.1:c.261G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.261G>C
  hgvsp: ENST00000225777.3:c.261G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.260G>C
  hgvsp: ENST00000589168.1:c.260G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*124G>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.268G>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-532G>C
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17931
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9008
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2603
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4652
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3572
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12160
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5684
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1902
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val87Val
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

17-76167062-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167062
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167062
    reference: chr 17
allele count: 1
allele frequency: 8.241577108195424e-6
allele num: 121336
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1298C>G
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.264C>G
  hgvsp: ENST00000225777.3:c.264C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.96C>G
  hgvsp: ENST00000590201.1:c.96C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.264C>G
  hgvsp: ENST00000588282.1:c.264C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.271C>G
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.263C>G
  hgvsp: ENST00000589168.1:c.263C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*127C>G
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.264C>G
  hgvsp: ENST00000585591.1:c.264C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-529C>G
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12161
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5682
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4653
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9010
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17928
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3571
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Val88Val
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

17-76167062-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167062
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167062
    reference: chr 17
allele count: 1
allele frequency: 8.241577108195424e-6
allele num: 121336
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.264C>T
  hgvsp: ENST00000588282.1:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.96C>T
  hgvsp: ENST00000590201.1:c.96C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.263C>T
  hgvsp: ENST00000589168.1:c.263C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.264C>T
  hgvsp: ENST00000225777.3:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-529C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*127C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1298C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.271C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.264C>T
  hgvsp: ENST00000585591.1:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17928
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4653
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3571
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9010
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5682
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12161
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22890
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val88Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-76167063-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167063
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167063
    reference: chr 17
allele count: 4
allele frequency: 3.296685183048445e-5
allele num: 121334
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.265G>A
  hgvsp: ENSP00000465678.1:p.Asp89Asn
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.265G>A
  hgvsp: ENSP00000225777.2:p.Asp89Asn
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.264G>A
  hgvsp: ENSP00000466204.1:p.Asp89Asn
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.272G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.265G>A
  hgvsp: ENSP00000467600.1:p.Asp89Asn
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.97G>A
  hgvsp: ENSP00000465005.1:p.Asp33Asn
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-528G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*128G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1299G>A
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12155
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17935
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3572
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4652
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5683
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9007
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4196
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3519
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asp89Asn
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

17-76167065-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167065
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167065
    reference: chr 17
allele count: 1
allele frequency: 8.241848811525402e-6
allele num: 121332
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.266C>T
  hgvsp: ENST00000589168.1:c.266C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.267C>T
  hgvsp: ENST00000225777.3:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.267C>T
  hgvsp: ENST00000585591.1:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-526C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1301C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.274C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.267C>T
  hgvsp: ENST00000588282.1:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*130C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.99C>T
  hgvsp: ENST00000590201.1:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12151
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3570
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9009
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4652
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5687
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17928
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22871
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3216
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asp89Asp
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD

17-76167066-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167066
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167066
    reference: chr 17
allele count: 4
allele frequency: 3.296739524610161e-5
allele num: 121332
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.268G>A
  hgvsp: ENSP00000467600.1:p.Ala90Thr
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*131G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.268G>A
  hgvsp: ENSP00000225777.2:p.Ala90Thr
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.275G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.267G>A
  hgvsp: ENSP00000466204.1:p.Ala90Thr
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-525G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.268G>A
  hgvsp: ENSP00000465678.1:p.Ala90Thr
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.100G>A
  hgvsp: ENSP00000465005.1:p.Ala34Thr
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1302G>A
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17926
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4652
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3570
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12161
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9003
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5686
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4197
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala90Thr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

17-76167067-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167067
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167067
    reference: chr 17
allele count: 3
allele frequency: 2.47255464345762e-5
allele num: 121332
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*132C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.101C>T
  hgvsp: ENSP00000465005.1:p.Ala34Val
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1303C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.269C>T
  hgvsp: ENSP00000225777.2:p.Ala90Val
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.269C>T
  hgvsp: ENSP00000465678.1:p.Ala90Val
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.276C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.268C>T
  hgvsp: ENSP00000466204.1:p.Ala90Val
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-524C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.269C>T
  hgvsp: ENSP00000467600.1:p.Ala90Val
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9003
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4650
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3570
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12157
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17932
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5686
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4197
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala90Val
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

17-76167068-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167068
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167068
    reference: chr 17
allele count: 7
allele frequency: 5.76948437293947e-5
allele num: 121328
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.270G>A
  hgvsp: ENST00000225777.3:c.270G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-523G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*133G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.102G>A
  hgvsp: ENST00000590201.1:c.102G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.277G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1304G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.269G>A
  hgvsp: ENST00000589168.1:c.269G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.270G>A
  hgvsp: ENST00000585591.1:c.270G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.270G>A
  hgvsp: ENST00000588282.1:c.270G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12167
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4650
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17924
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3571
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9004
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5683
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2604
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3214
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22916
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala90Ala
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum

17-76167070-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167070
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167069
    reference: chr 17
allele count: 1
allele frequency: 8.241984669908513e-6
allele num: 121330
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.274delT
  hgvsp: ENSP00000466204.1:p.Phe92SerfsTer87
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.275delT
  hgvsp: ENSP00000465678.1:p.Phe92SerfsTer54
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.282delT
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1309delT
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.107delT
  hgvsp: ENSP00000465005.1:p.Phe36SerfsTer54
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-518delT
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.275delT
  hgvsp: ENSP00000467600.1:p.Phe92SerfsTer54
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.275delT
  hgvsp: ENSP00000225777.2:p.Phe92SerfsTer54
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*138delT
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12168
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8996
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3568
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4652
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5684
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17925
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2605
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22909
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Phe92SerfsTer54
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: AT
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ

17-76167072-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167072
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167072
    reference: chr 17
allele count: 1
allele frequency: 8.242256400112095e-6
allele num: 121326
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.274T>C
  hgvsp: ENSP00000465678.1:p.Phe92Leu
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1308T>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.273T>C
  hgvsp: ENSP00000466204.1:p.Phe92Leu
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.106T>C
  hgvsp: ENSP00000465005.1:p.Phe36Leu
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.281T>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.274T>C
  hgvsp: ENSP00000467600.1:p.Phe92Leu
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.274T>C
  hgvsp: ENSP00000225777.2:p.Phe92Leu
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*137T>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-519T>C
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2604
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17927
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8992
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5684
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12166
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4652
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3569
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3221
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Phe92Leu
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD

17-76167075-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167075
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167075
    reference: chr 17
allele count: 6
allele frequency: 4.945516888940176e-5
allele num: 121322
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.284C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-516C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.276C>T
  hgvsp: ENSP00000466204.1:p.Pro93Ser
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.277C>T
  hgvsp: ENSP00000465678.1:p.Pro93Ser
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.277C>T
  hgvsp: ENSP00000225777.2:p.Pro93Ser
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1311C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.277C>T
  hgvsp: ENSP00000467600.1:p.Pro93Ser
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.109C>T
  hgvsp: ENSP00000465005.1:p.Pro37Ser
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*140C>T
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4653
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12167
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8991
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5684
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17914
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3567
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro93Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: QD

17-76167077-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167077
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167077
    reference: chr 17
allele count: 1
allele frequency: 8.242528148233626e-6
allele num: 121322
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.278C>G
  hgvsp: ENST00000589168.1:c.278C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1313C>G
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*142C>G
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.279C>G
  hgvsp: ENST00000225777.3:c.279C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.111C>G
  hgvsp: ENST00000590201.1:c.111C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.279C>G
  hgvsp: ENST00000585591.1:c.279C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.286C>G
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-514C>G
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.279C>G
  hgvsp: ENST00000588282.1:c.279C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17914
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2603
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5687
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8989
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12170
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4653
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3571
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4188
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3220
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro93Pro
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

17-76167077-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167077
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167077
    reference: chr 17
allele count: 1
allele frequency: 8.242528148233626e-6
allele num: 121322
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.279C>T
  hgvsp: ENST00000225777.3:c.279C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1313C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.286C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.279C>T
  hgvsp: ENST00000588282.1:c.279C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.278C>T
  hgvsp: ENST00000589168.1:c.278C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*142C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-514C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.279C>T
  hgvsp: ENST00000585591.1:c.279C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.111C>T
  hgvsp: ENST00000590201.1:c.111C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3571
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2603
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17914
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4653
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8989
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12170
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5687
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3511
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6587
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro93Pro
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

17-76167082-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167082
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167082
    reference: chr 17
allele count: 1
allele frequency: 8.242528148233626e-6
allele num: 121322
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.284T>C
  hgvsp: ENSP00000225777.2:p.Ile95Thr
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-509T>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1318T>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.291T>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.116T>C
  hgvsp: ENSP00000465005.1:p.Ile39Thr
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.284T>C
  hgvsp: ENSP00000465678.1:p.Ile95Thr
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*147T>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.284T>C
  hgvsp: ENSP00000467600.1:p.Ile95Thr
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.283T>C
  hgvsp: ENSP00000466204.1:p.Ile95Thr
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8985
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4652
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17921
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5689
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3569
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12167
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ile95Thr
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

17-76167089-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167089
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167089
    reference: chr 17
allele count: 4
allele frequency: 3.297391763115376e-5
allele num: 121308
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-502C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.291C>T
  hgvsp: ENST00000588282.1:c.291C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.291C>T
  hgvsp: ENST00000585591.1:c.291C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.123C>T
  hgvsp: ENST00000590201.1:c.123C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.290C>T
  hgvsp: ENST00000589168.1:c.290C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.298C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.291C>T
  hgvsp: ENST00000225777.3:c.291C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1325C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*154C>T
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4652
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3568
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5687
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17917
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12163
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8978
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2757
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asn97Asn
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD

17-76167090-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167090
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167090
    reference: chr 17
allele count: 21
allele frequency: 1.731159217186289e-4
allele num: 121306
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*155G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-501G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.292G>A
  hgvsp: ENSP00000465678.1:p.Ala98Thr
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.291G>A
  hgvsp: ENSP00000466204.1:p.Ala98Thr
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.292G>A
  hgvsp: ENSP00000467600.1:p.Ala98Thr
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.124G>A
  hgvsp: ENSP00000465005.1:p.Ala42Thr
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.292G>A
  hgvsp: ENSP00000225777.2:p.Ala98Thr
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.299G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1326G>A
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12161
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8981
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3570
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4650
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2605
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5682
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17908
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6581
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala98Thr
num of homozygotes: 1
population: Other
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD

17-76167094-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167094
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167094
    reference: chr 17
allele count: 1
allele frequency: 8.24334350012365e-6
allele num: 121310
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1330C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.296C>T
  hgvsp: ENSP00000225777.2:p.Thr99Ile
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.303C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.128C>T
  hgvsp: ENSP00000465005.1:p.Thr43Ile
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*159C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.296C>T
  hgvsp: ENSP00000465678.1:p.Thr99Ile
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.296C>T
  hgvsp: ENSP00000467600.1:p.Thr99Ile
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.295C>T
  hgvsp: ENSP00000466204.1:p.Thr99Ile
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-497C>T
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17913
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4649
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5688
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3572
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12165
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2604
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8977
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2756
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr99Ile
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-76167099-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167099
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167099
    reference: chr 17
allele count: 2
allele frequency: 1.648695881557688e-5
allele num: 121308
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.308C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.301C>T
  hgvsp: ENSP00000225777.2:p.Arg101Cys
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*164C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1335C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.133C>T
  hgvsp: ENSP00000465005.1:p.Arg45Cys
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.300C>T
  hgvsp: ENSP00000466204.1:p.Arg101Cys
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-492C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.301C>T
  hgvsp: ENSP00000467600.1:p.Arg101Cys
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.301C>T
  hgvsp: ENSP00000465678.1:p.Arg101Cys
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3574
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4650
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8982
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5679
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12166
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17885
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg101Cys
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

17-76167100-G-GC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167100
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167101
    reference: chr 17
allele count: 1
allele frequency: 8.243887157672586e-6
allele num: 121302
alternate allele: GC
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.135dupC
  hgvsp: ENSP00000465005.1:p.Lys46GlnfsTer7
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-490dupC
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.310dupC
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*166dupC
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.303dupC
  hgvsp: ENSP00000467600.1:p.Lys102GlnfsTer7
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.302dupC
  hgvsp: ENSP00000466204.1:p.Lys102GlnfsTer7
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.303dupC
  hgvsp: ENSP00000225777.2:p.Lys102GlnfsTer7
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.303dupC
  hgvsp: ENSP00000465678.1:p.Lys102GlnfsTer7
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1337dupC
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 4650
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3574
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12162
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5685
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8981
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17879
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3500
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Lys102GlnfsTer7
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/17-76167101-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167101
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167101
    reference: chr 17
allele count: 1
allele frequency: 8.244023083264634e-6
allele num: 121300
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.302C>A
  hgvsp: ENST00000589168.1:c.302C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.135C>A
  hgvsp: ENST00000590201.1:c.135C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.303C>A
  hgvsp: ENST00000588282.1:c.303C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.310C>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.303C>A
  hgvsp: ENST00000225777.3:c.303C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-490C>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.303C>A
  hgvsp: ENST00000585591.1:c.303C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1337C>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*166C>A
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8975
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17895
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3572
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5682
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2605
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4648
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12161
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15366
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4187
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg101Arg
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ

17-76167104-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167104
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167104
    reference: chr 17
allele count: 19
allele frequency: 1.56636438582028e-4
allele num: 121300
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.306G>A
  hgvsp: ENST00000585591.1:c.306G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*169G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.305G>A
  hgvsp: ENST00000589168.1:c.305G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-487G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.306G>A
  hgvsp: ENST00000588282.1:c.306G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.313G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.306G>A
  hgvsp: ENST00000225777.3:c.306G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.138G>A
  hgvsp: ENST00000590201.1:c.138G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1340G>A
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8975
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17900
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4648
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2603
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12156
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3572
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5682
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Lys102Lys
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

17-76167117-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167117
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167117
    reference: chr 17
allele count: 1
allele frequency: 8.247014580721778e-6
allele num: 121256
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.319G>A
  hgvsp: ENSP00000225777.2:p.Gly107Ser
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.318G>A
  hgvsp: ENSP00000466204.1:p.Gly107Ser
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.319G>A
  hgvsp: ENSP00000467600.1:p.Gly107Ser
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.151G>A
  hgvsp: ENSP00000465005.1:p.Gly51Ser
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.326G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-474G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.319G>A
  hgvsp: ENSP00000465678.1:p.Gly107Ser
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1353G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*182G>A
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12144
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17878
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8964
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4649
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5679
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3570
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2604
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22842
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3211
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly107Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

17-76167126-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167126
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167126
    reference: chr 17
allele count: 1
allele frequency: 8.251233559417133e-6
allele num: 121194
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.328C>G
  hgvsp: ENSP00000467600.1:p.Leu110Val
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.327C>G
  hgvsp: ENSP00000466204.1:p.Leu110Val
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1362C>G
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.328C>G
  hgvsp: ENSP00000465678.1:p.Leu110Val
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.335C>G
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*191C>G
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.160C>G
  hgvsp: ENSP00000465005.1:p.Leu54Val
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.328C>G
  hgvsp: ENSP00000225777.2:p.Leu110Val
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-465C>G
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5674
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3570
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4645
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17823
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8952
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2604
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12114
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1899
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu110Val
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/17-76167128-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167128
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167128
    reference: chr 17
allele count: 1
allele frequency: 8.252050634582693e-6
allele num: 121182
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-463C>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.337C>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.329C>A
  hgvsp: ENST00000589168.1:c.329C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*193C>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.330C>A
  hgvsp: ENST00000225777.3:c.330C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.162C>A
  hgvsp: ENST00000590201.1:c.162C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.330C>A
  hgvsp: ENST00000585591.1:c.330C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1364C>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.330C>A
  hgvsp: ENST00000588282.1:c.330C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4644
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8942
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5675
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12103
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3569
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17799
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2604
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4168
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu110Leu
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

17-76167129-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167129
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167129
    reference: chr 17
allele count: 23
allele frequency: 1.898253606681853e-4
allele num: 121164
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.331T>C
  hgvsp: ENSP00000467600.1:p.Phe111Leu
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*194T>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.338T>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.330T>C
  hgvsp: ENSP00000466204.1:p.Phe111Leu
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.331T>C
  hgvsp: ENSP00000225777.2:p.Phe111Leu
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.331T>C
  hgvsp: ENSP00000465678.1:p.Phe111Leu
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1365T>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-462T>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.163T>C
  hgvsp: ENSP00000465005.1:p.Phe55Leu
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3569
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4640
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8934
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12069
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2604
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5677
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17792
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 15355
  bin: 9.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 22659
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Phe111Leu
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

17-76167135-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167135
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167135
    reference: chr 17
allele count: 1
allele frequency: 8.25722920416825e-6
allele num: 121106
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*200G>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.336G>T
  hgvsp: ENSP00000466204.1:p.Gly113Trp
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.337G>T
  hgvsp: ENSP00000225777.2:p.Ala113Ser
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.337G>T
  hgvsp: ENSP00000465678.1:p.Ala113Ser
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.169G>T
  hgvsp: ENSP00000465005.1:p.Ala57Ser
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.337G>T
  hgvsp: ENSP00000467600.1:p.Ala113Ser
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-456G>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.344G>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1371G>T
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3569
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8892
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17747
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12041
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5673
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4647
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala113Ser
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

17-76167136-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167136
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167136
    reference: chr 17
allele count: 1
allele frequency: 8.261458643138033e-6
allele num: 121044
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.337+1G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.336+1G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.169+1G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-455G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*200+1G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.345G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.337+1G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.337+1G>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1372G>A
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17685
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8868
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11967
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5675
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4644
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3570
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22389
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3494
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
hgvs: c.337+1G>A
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

17-76167138-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167138
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167138
    reference: chr 17
allele count: 2
allele frequency: 1.652237129072764e-5
allele num: 121048
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.347A>G
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.337+3A>G
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.336+3A>G
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.337+3A>G
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.337+3A>G
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1374A>G
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*200+3A>G
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.169+3A>G
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-453A>G
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17699
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4642
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5675
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8856
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3569
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11963
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1900
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4156
  bin: 7.75e1
  variant carriers: 0
hgvs: c.337+3A>G
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-76167138-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167138
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167138
    reference: chr 17
allele count: 1
allele frequency: 8.261185645363822e-6
allele num: 121048
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.336+3A>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.337+3A>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.347A>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.169+3A>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.337+3A>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*200+3A>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1374A>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-453A>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.337+3A>T
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11963
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5675
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8856
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17699
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4642
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3569
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3185
  bin: 7.25e1
  variant carriers: 0
hgvs: c.337+3A>T
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

17-76167141-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167141
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167141
    reference: chr 17
allele count: 1
allele frequency: 8.265555775970376e-6
allele num: 120984
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.169+6T>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.350T>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.336+6T>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-450T>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.337+6T>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*200+6T>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.337+6T>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1377T>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.337+6T>C
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11867
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17612
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8829
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4644
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5669
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3573
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1899
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: c.337+6T>C
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

17-76167141-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167141
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167141
    reference: chr 17
allele count: 19
allele frequency: 1.570455597434371e-4
allele num: 120984
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.169+6T>G
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.337+6T>G
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.337+6T>G
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*200+6T>G
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.350T>G
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-450T>G
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.336+6T>G
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1377T>G
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.337+6T>G
  variant of: http://identifiers.org/hgnc/11499
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17612
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8829
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5669
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3573
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11867
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4644
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6461
  bin: 6.75e1
  variant carriers: 0
hgvs: c.337+6T>G
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ

17-76167147-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167147
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167146
    reference: chr 17
allele count: 1
allele frequency: 8.273077750384698e-6
allele num: 120874
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.358delG
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.169+14delG
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.336+14delG
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.337+14delG
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*200+14delG
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1385delG
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-442delG
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.337+14delG
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.337+14delG
  variant of: http://identifiers.org/hgnc/11499
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3573
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8739
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5668
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17491
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11719
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4643
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6404
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: TG
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ

17-76167154-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167154
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167154
    reference: chr 17
allele count: 1
allele frequency: 8.284317786430287e-6
allele num: 120710
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.363T>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.337+19T>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.169+19T>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-437T>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1390T>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.337+19T>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.336+19T>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*200+19T>A
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.337+19T>A
  variant of: http://identifiers.org/hgnc/11499
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17024
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8628
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3572
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5649
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11399
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4642
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3129
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3470
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum

http://identifiers.org/exac.variant/17-76167157-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167157
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167157
    reference: chr 17
allele count: 1
allele frequency: 8.285553309249991e-6
allele num: 120692
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1393A>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-434A>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.337+22A>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.366A>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.169+22A>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.337+22A>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.337+22A>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*200+22A>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.336+22A>C
  variant of: http://identifiers.org/hgnc/11499
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5641
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16908
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11263
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4643
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8578
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3570
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3470
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2753
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1202
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

17-76167167-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167167
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167167
    reference: chr 17
allele count: 1
allele frequency: 8.300132802124834e-6
allele num: 120480
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1403G>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.336+32G>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.169+32G>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-424G>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.376G>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*200+32G>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.337+32G>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.337+32G>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.337+32G>C
  variant of: http://identifiers.org/hgnc/11499
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4642
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10526
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5624
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8427
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16198
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3571
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1886
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15344
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3464
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

17-76167167-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167167
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167167
    reference: chr 17
allele count: 4
allele frequency: 3.320053120849933e-5
allele num: 120480
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.337+32G>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.337+32G>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1403G>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-424G>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*200+32G>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.169+32G>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.337+32G>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.376G>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.336+32G>T
  variant of: http://identifiers.org/hgnc/11499
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10526
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8427
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4642
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5624
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3571
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16198
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1886
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3464
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 919
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum

17-76167175-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167175
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167175
    reference: chr 17
allele count: 1
allele frequency: 8.315040244794785e-6
allele num: 120264
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.337+40C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-416C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.336+40C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.337+40C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1411C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.337+40C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.384C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*200+40C>T
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.169+40C>T
  variant of: http://identifiers.org/hgnc/11499
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2779
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3570
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5638
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8313
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4632
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10109
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15342
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1055
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4026
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18077
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum

17-76167183-CTA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167183
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167181
    reference: chr 17
allele count: 1
allele frequency: 8.338475393159114e-6
allele num: 119926
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.337+49_337+50delTA
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.336+49_336+50delTA
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1420_1421delTA
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.169+49_169+50delTA
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*200+49_*200+50delTA
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-407_100-406delTA
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.337+49_337+50delTA
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.393_394delTA
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.337+49_337+50delTA
  variant of: http://identifiers.org/hgnc/11499
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3569
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9732
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8202
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16024
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4631
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5626
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15342
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1331
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5902
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3019
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: CTA
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

17-76167184-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167184
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167184
    reference: chr 17
allele count: 1
allele frequency: 8.343484572897024e-6
allele num: 119854
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.169+49T>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.337+49T>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*200+49T>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.337+49T>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.336+49T>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1420T>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.393T>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.337+49T>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-407T>C
  variant of: http://identifiers.org/hgnc/11499
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4630
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9750
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5622
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3569
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16022
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2845
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8195
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2751
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3453
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 977
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1306
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3024
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/17-76167543-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76167543
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76167543
    reference: chr 17
allele count: 16
allele frequency: 1.452643811737362e-4
allele num: 110144
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465678
  ensembl transcript: ENST00000585591
  gene symbol: SYNGR2
  hgvsc: ENST00000585591.1:c.338-48A>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466032
  ensembl transcript: ENST00000589711
  gene symbol: SYNGR2
  hgvsc: ENST00000589711.1:c.100-48A>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000592456
  gene symbol: SYNGR2
  hgvsc: ENST00000592456.1:n.1779A>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000225777
  ensembl transcript: ENST00000225777
  gene symbol: SYNGR2
  hgvsc: ENST00000225777.3:c.338-48A>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108639
  ensembl transcript: ENST00000591770
  gene symbol: SYNGR2
  hgvsc: ENST00000591770.1:n.752A>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000467600
  ensembl transcript: ENST00000588282
  gene symbol: SYNGR2
  hgvsc: ENST00000588282.1:c.338-48A>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000465005
  ensembl transcript: ENST00000590201
  gene symbol: SYNGR2
  hgvsc: ENST00000590201.1:c.170-48A>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466204
  ensembl transcript: ENST00000589168
  gene symbol: SYNGR2
  hgvsc: ENST00000589168.1:c.337-277A>C
  variant of: http://identifiers.org/hgnc/11499
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108639
  ensembl protein: ENSP00000466942
  ensembl transcript: ENST00000589183
  gene symbol: SYNGR2
  hgvsc: ENST00000589183.1:c.*201-277A>C
  variant of: http://identifiers.org/hgnc/11499
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2770
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28148
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11889
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1931
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10084
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2223
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37052
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 420
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12563
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 908
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4658
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10816
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2438
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.639636785978249e-5
allele num: 37884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6070
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.7e-3

FS
type: SiteQuality
SIO_000300: 5.37e-1

DP
type: SiteQuality
SIO_000300: 7.89511e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.15e0

QD
type: SiteQuality
SIO_000300: 1.316e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.71e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 10
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 767
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1469
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3079
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 802
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 908
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.639636785978249e-5
allele num: 37884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2438
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6070
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.573981415296641e-4
allele num: 5596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10816
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4658
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.15e0

FS
type: SiteQuality
SIO_000300: 5.37e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.71e0

DP
type: SiteQuality
SIO_000300: 7.89511e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e-1

QD
type: SiteQuality
SIO_000300: 1.316e1

GenotypeQuality
all individuals: 404
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 977
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 573
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1622
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5958
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37094
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.300595238095238e-5
allele num: 10752
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2348
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

MQ
type: SiteQuality
SIO_000300: 5.896e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.06e-2

QD
type: SiteQuality
SIO_000300: 9.380000000000001e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.03e-1

DP
type: SiteQuality
SIO_000300: 7.7842e5

VQSLOD
type: SiteQuality
SIO_000300: -1.022e0

GenotypeQuality
all individuals: 26855
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4350
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3469
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10765
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3536
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7275
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2405
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66658
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.47e0

VQSLOD
type: SiteQuality
SIO_000300: 6.13e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.12e-1

DP
type: SiteQuality
SIO_000300: 1.882153e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.5e-2

MQ
type: SiteQuality
SIO_000300: 5.943e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.079e0

QD
type: SiteQuality
SIO_000300: 1.418e1

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7229
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26712
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1837
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11009
bin: 9.75e1
variant carriers: 308

GenotypeQuality
all individuals: 2390
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3446
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 306
allele frequency: 2.643856920684292e-2
allele num: 11574
num of homozygotes: 3

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.926782273603083e-4
allele num: 10380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.00048007681229e-5
allele num: 66656
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.47e1

MQ
type: SiteQuality
SIO_000300: 5.951e1

MQRankSum
type: SiteQuality
SIO_000300: 4.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.73e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.22e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.34e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.13e0

DP
type: SiteQuality
SIO_000300: 1.91428e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.46e-1

GenotypeQuality
all individuals: 3466
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3531
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26752
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1850
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2415
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4346
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10882
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 7243
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.000120004800192e-5
allele num: 66664
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.96e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.0e-2

DP
type: SiteQuality
SIO_000300: 1.883587e6

VQSLOD
type: SiteQuality
SIO_000300: 2.81e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.54e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.84e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.96e-1

QD
type: SiteQuality
SIO_000300: 1.422e1

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7247
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4344
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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East Asian
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African
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European (Finnish)
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VQSLOD
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FS
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MQRankSum
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DP
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MQ
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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Other
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African
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European (Non-Finnish)
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South Asian
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InbreedingCoeff
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MQ
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BaseQRankSum
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FS
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ClippingRankSum
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VQSLOD
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MQRankSum
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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African
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European (Finnish)
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European (Non-Finnish)
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South Asian
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MQ
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ReadPosRankSum
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FS
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BaseQRankSum
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ClippingRankSum
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DP
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VQSLOD
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MQRankSum
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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Other
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European (Non-Finnish)
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European (Finnish)
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South Asian
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FS
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VQSLOD
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QD
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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DP
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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South Asian
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European (Finnish)
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Latino
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European (Non-Finnish)
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FS
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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DP
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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East Asian
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European (Finnish)
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South Asian
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Other
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InbreedingCoeff
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QD
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MQ
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VQSLOD
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MQRankSum
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FS
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DP
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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African
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Latino
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East Asian
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European (Finnish)
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European (Non-Finnish)
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ReadPosRankSum
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DP
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FS
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MQ
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ClippingRankSum
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MQRankSum
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VQSLOD
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InbreedingCoeff
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QD
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GenotypeQuality
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East Asian
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African
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ReadPosRankSum
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MQ
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VQSLOD
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QD
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InbreedingCoeff
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FS
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MQRankSum
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DP
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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Other
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East Asian
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African
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MQ
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VQSLOD
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FS
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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QD
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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Latino
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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African
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ClippingRankSum
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DP
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MQ
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QD
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MQRankSum
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VQSLOD
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BaseQRankSum
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FS
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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Other
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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South Asian
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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DP
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MQ
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FS
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Non-Finnish)
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Other
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South Asian
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Latino
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VQSLOD
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FS
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MQ
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DP
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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allele num: 66678
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East Asian
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Latino
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South Asian
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African
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allele frequency: 7.027339237581825e-3
allele num: 10388
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Other
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ReadPosRankSum
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BaseQRankSum
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MQ
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DP
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QD
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MQRankSum
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InbreedingCoeff
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FS
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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African
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European (Finnish)
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European (Non-Finnish)
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East Asian
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ReadPosRankSum
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MQRankSum
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VQSLOD
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ClippingRankSum
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FS
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BaseQRankSum
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InbreedingCoeff
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MQ
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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African
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European (Non-Finnish)
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East Asian
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DP
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InbreedingCoeff
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QD
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MQRankSum
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ClippingRankSum
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FS
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VQSLOD
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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European (Finnish)
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Latino
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East Asian
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European (Non-Finnish)
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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MQ
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VQSLOD
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FS
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DP
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MQRankSum
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QD
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GenotypeQuality
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European (Finnish)
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East Asian
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South Asian
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Other
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allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.29e-1

MQ
type: SiteQuality
SIO_000300: 5.861e1

MQRankSum
type: SiteQuality
SIO_000300: 5.54e-1

DP
type: SiteQuality
SIO_000300: 1.887168e6

QD
type: SiteQuality
SIO_000300: 1.379e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.39e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.997e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999040307101727e-5
allele num: 66688
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.542e0

ClippingRankSum
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SIO_000300: 7.6e-1

MQ
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SIO_000300: 5.863e1

MQRankSum
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BaseQRankSum
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SIO_000300: -3.765e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.29e-1

InbreedingCoeff
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SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.265e1

FS
type: SiteQuality
SIO_000300: 1.998e0

DP
type: SiteQuality
SIO_000300: 1.886887e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499610101373643e-5
allele num: 66684
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.925e1

VQSLOD
type: SiteQuality
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FS
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ReadPosRankSum
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QD
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -1.0e-4

DP
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SIO_000300: 1.886757e6

BaseQRankSum
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SIO_000300: -2.006e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999040307101727e-5
allele num: 66688
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.886968e6

VQSLOD
type: SiteQuality
SIO_000300: 1.32e0

MQ
type: SiteQuality
SIO_000300: 5.918e1

MQRankSum
type: SiteQuality
SIO_000300: -4.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.95e-1

QD
type: SiteQuality
SIO_000300: 1.454e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.538e0

FS
type: SiteQuality
SIO_000300: 4.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.570000000000001e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.499610101373643e-4
allele num: 66684
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.614e0

MQ
type: SiteQuality
SIO_000300: 5.743e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.23e0

VQSLOD
type: SiteQuality
SIO_000300: -2.122e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e-2

DP
type: SiteQuality
SIO_000300: 1.887178e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.714e0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

European (Non-Finnish)
type: Population
allele count: 9750
allele frequency: 1.462470750584988e-1
allele num: 66668
num of homozygotes: 751

Other
type: Population
allele count: 144
allele frequency: 1.596452328159645e-1
allele num: 902
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South Asian
type: Population
allele count: 1904
allele frequency: 1.153100775193798e-1
allele num: 16512
num of homozygotes: 134

European (Finnish)
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allele count: 629
allele frequency: 9.510130027214998e-2
allele num: 6614
num of homozygotes: 27

Latino
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allele count: 886
allele frequency: 7.656412029035603e-2
allele num: 11572
num of homozygotes: 41

East Asian
type: Population
allele count: 6
allele frequency: 6.938020351526364e-4
allele num: 8648
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African
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allele count: 554
allele frequency: 5.332050048123196e-2
allele num: 10390
num of homozygotes: 12

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.81e-2

VQSLOD
type: SiteQuality
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QD
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MQRankSum
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.091e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

DP
type: SiteQuality
SIO_000300: 2.848408e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
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num of homozygotes: 0

East Asian
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South Asian
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Latino
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Other
type: Population
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African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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MQRankSum
type: SiteQuality
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FS
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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MQ
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InbreedingCoeff
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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South Asian
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Latino
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European (Finnish)
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European (Non-Finnish)
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East Asian
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DP
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ReadPosRankSum
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FS
type: SiteQuality
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InbreedingCoeff
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QD
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MQ
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SIO_000300: 5.858e1

MQRankSum
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

African
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Other
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South Asian
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allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
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MQRankSum
type: SiteQuality
SIO_000300: 7.53e-1

DP
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FS
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MQ
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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QD
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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European (Finnish)
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East Asian
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Latino
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FS
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QD
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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MQ
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VQSLOD
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MQRankSum
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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East Asian
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European (Finnish)
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Other
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South Asian
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MQ
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DP
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QD
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FS
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MQRankSum
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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South Asian
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Latino
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European (Finnish)
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Other
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QD
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BaseQRankSum
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MQRankSum
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FS
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VQSLOD
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MQ
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InbreedingCoeff
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DP
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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East Asian
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African
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Other
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European (Finnish)
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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DP
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VQSLOD
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MQ
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ReadPosRankSum
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InbreedingCoeff
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FS
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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African
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Latino
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European (Non-Finnish)
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FS
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VQSLOD
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DP
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InbreedingCoeff
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BaseQRankSum
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QD
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ClippingRankSum
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MQRankSum
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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South Asian
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African
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European (Finnish)
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ReadPosRankSum
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MQ
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InbreedingCoeff
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MQRankSum
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VQSLOD
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FS
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DP
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ClippingRankSum
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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African
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European (Non-Finnish)
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ReadPosRankSum
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ClippingRankSum
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DP
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BaseQRankSum
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InbreedingCoeff
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MQ
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FS
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VQSLOD
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QD
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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African
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European (Non-Finnish)
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Latino
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South Asian
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VQSLOD
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ClippingRankSum
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DP
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FS
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QD
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MQRankSum
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InbreedingCoeff
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MQ
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SIO_000300: 5.986e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49947518368571e-5
allele num: 66690
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.63e0

FS
type: SiteQuality
SIO_000300: 6.469e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.73e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

MQRankSum
type: SiteQuality
SIO_000300: 6.48e-1

DP
type: SiteQuality
SIO_000300: 2.044998e6

QD
type: SiteQuality
SIO_000300: 1.231e1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66688
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
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allele count: 6
allele frequency: 6.938020351526364e-4
allele num: 8648
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.941e1

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.148e0

ReadPosRankSum
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SIO_000300: 6.01e-1

DP
type: SiteQuality
SIO_000300: 2.044917e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.37e-1

FS
type: SiteQuality
SIO_000300: 1.772e0

QD
type: SiteQuality
SIO_000300: 1.508e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66688
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
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South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
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DP
type: SiteQuality
SIO_000300: 2.044707e6

FS
type: SiteQuality
SIO_000300: 2.429e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.21e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.485e0

VQSLOD
type: SiteQuality
SIO_000300: 5.73e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.1e-1

QD
type: SiteQuality
SIO_000300: 1.673e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499520153550864e-5
allele num: 66688
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.485e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.1e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

FS
type: SiteQuality
SIO_000300: 2.429e0

QD
type: SiteQuality
SIO_000300: 1.673e1

MQ
type: SiteQuality
SIO_000300: 5.959e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.21e-1

DP
type: SiteQuality
SIO_000300: 2.044707e6

VQSLOD
type: SiteQuality
SIO_000300: 5.73e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499520153550864e-5
allele num: 66688
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.59e1

VQSLOD
type: SiteQuality
SIO_000300: -3.56e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.21e-1

DP
type: SiteQuality
SIO_000300: 2.044341e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.16e0

MQRankSum
type: SiteQuality
SIO_000300: 1.34e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.77e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.626492106276473e-5
allele num: 10388
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.999580058791769e-5
allele num: 66676
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.646031471554557e-5
allele num: 11566
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.956e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.73e0

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.23e-1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.04421e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.11e-1

QD
type: SiteQuality
SIO_000300: 1.224e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
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African
type: Population
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allele frequency: 9.63020030816641e-5
allele num: 10384
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South Asian
type: Population
allele count: 8
allele frequency: 4.845548152634767e-4
allele num: 16510
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European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.349811026456296e-4
allele num: 66676
num of homozygotes: 0

East Asian
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allele count: 0
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Latino
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allele count: 2
allele frequency: 1.729206294310911e-4
allele num: 11566
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.85e-1

FS
type: SiteQuality
SIO_000300: 1.838e0

MQRankSum
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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SIO_000300: -2.087e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

QD
type: SiteQuality
SIO_000300: 1.256e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

Other
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East Asian
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African
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South Asian
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European (Finnish)
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allele count: 0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.499700059988002e-5
allele num: 66680
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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BaseQRankSum
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MQRankSum
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DP
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VQSLOD
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MQ
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FS
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QD
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Non-Finnish)
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European (Finnish)
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Latino
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Other
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South Asian
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VQSLOD
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ReadPosRankSum
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FS
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MQRankSum
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DP
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InbreedingCoeff
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QD
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MQ
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BaseQRankSum
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ClippingRankSum
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SIO_000300: -4.16e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 66676
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African
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South Asian
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allele frequency: 0.0e0
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Latino
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ReadPosRankSum
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FS
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QD
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MQRankSum
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VQSLOD
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DP
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InbreedingCoeff
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MQ
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

East Asian
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Other
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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European (Non-Finnish)
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Latino
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ReadPosRankSum
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DP
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VQSLOD
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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QD
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FS
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

South Asian
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allele num: 16510
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 2.549719530851606e-4
allele num: 66674
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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VQSLOD
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FS
type: SiteQuality
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DP
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MQ
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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East Asian
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European (Non-Finnish)
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Latino
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Other
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South Asian
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MQ
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ClippingRankSum
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FS
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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DP
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QD
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

European (Finnish)
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Other
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European (Non-Finnish)
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East Asian
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African
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South Asian
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InbreedingCoeff
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DP
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FS
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BaseQRankSum
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QD
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MQRankSum
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VQSLOD
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ClippingRankSum
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Non-Finnish)
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South Asian
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Other
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Latino
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European (Finnish)
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VQSLOD
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FS
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BaseQRankSum
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MQ
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InbreedingCoeff
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QD
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MQRankSum
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DP
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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Other
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East Asian
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African
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South Asian
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European (Non-Finnish)
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European (Finnish)
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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FS
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MQ
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InbreedingCoeff
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DP
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QD
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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allele num: 16420
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Other
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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FS
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QD
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MQRankSum
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MQ
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ReadPosRankSum
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DP
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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QD
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FS
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DP
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MQ
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MQRankSum
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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African
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allele frequency: 1.925669170036588e-4
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South Asian
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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BaseQRankSum
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FS
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VQSLOD
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InbreedingCoeff
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MQ
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DP
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MQRankSum
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QD
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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num of homozygotes: 0

African
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allele frequency: 9.628345850182938e-5
allele num: 10386
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66564
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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MQ
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SIO_000300: 5.6e1

ReadPosRankSum
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MQRankSum
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FS
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DP
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VQSLOD
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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Other
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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Latino
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MQRankSum
type: SiteQuality
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ClippingRankSum
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FS
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QD
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InbreedingCoeff
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VQSLOD
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DP
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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East Asian
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African
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European (Finnish)
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South Asian
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Latino
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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QD
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ClippingRankSum
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FS
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MQRankSum
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DP
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BaseQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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Latino
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Other
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African
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European (Non-Finnish)
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European (Finnish)
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ReadPosRankSum
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DP
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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QD
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InbreedingCoeff
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FS
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VQSLOD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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South Asian
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Latino
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East Asian
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African
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DP
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MQRankSum
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ReadPosRankSum
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QD
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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FS
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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South Asian
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Other
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European (Finnish)
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Latino
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European (Non-Finnish)
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QD
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SIO_000300: 1.418e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.9e-3

FS
type: SiteQuality
SIO_000300: 8.701000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.4e0

MQRankSum
type: SiteQuality
SIO_000300: 7.32e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.5e-1

DP
type: SiteQuality
SIO_000300: 2.012613e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.82e-1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 618
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16030
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506750241080039e-5
allele num: 66368
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

FS
type: SiteQuality
SIO_000300: 2.987e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.699999999999999e-3

DP
type: SiteQuality
SIO_000300: 1.996307e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

QD
type: SiteQuality
SIO_000300: 1.345e1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.637625289128758e-5
allele num: 10376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66368
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
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allele frequency: 1.871490954460387e-4
allele num: 16030
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.29e-1

QD
type: SiteQuality
SIO_000300: 1.345e1

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.699999999999999e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 2.987e0

DP
type: SiteQuality
SIO_000300: 1.996307e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508022680661117e-5
allele num: 66312
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15886
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.007e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 8.64e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.186e0

FS
type: SiteQuality
SIO_000300: 2.204e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.07e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.149e-1

DP
type: SiteQuality
SIO_000300: 1.98699e6

QD
type: SiteQuality
SIO_000300: 1.065e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.85e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15662
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.650646593321752e-5
allele num: 10362
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66208
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.981736e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.487e0

MQRankSum
type: SiteQuality
SIO_000300: 1.86e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.36e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

QD
type: SiteQuality
SIO_000300: 3.25e1

MQ
type: SiteQuality
SIO_000300: 5.915e1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511030522816561e-5
allele num: 66180
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.938e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.32e-1

FS
type: SiteQuality
SIO_000300: 4.917e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.39e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.75e0

DP
type: SiteQuality
SIO_000300: 1.981708e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.38e-1

QD
type: SiteQuality
SIO_000300: 1.291e1