12-56335891-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56335891
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56335891
    reference: chr 12
allele count: 5
allele frequency: 4.118276912939626e-5
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.166+24G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1336+24G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1093+24G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2288+24G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.226G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.2951+24G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1336+24G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1062+24G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000446605
  ensembl transcript: ENST00000553084
  gene symbol: DGKA
  hgvsc: ENST00000553084.1:c.*990+24G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*503+24G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1336+24G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000548047
  gene symbol: DGKA
  hgvsc: ENST00000548047.1:n.1490G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3421+24G>C
  variant of: http://identifiers.org/hgnc/2849
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15021
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8728
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3280
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1850
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15636
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5422
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP

12-56335894-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56335894
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56335894
    reference: chr 12
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.2951+27G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000446605
  ensembl transcript: ENST00000553084
  gene symbol: DGKA
  hgvsc: ENST00000553084.1:c.*990+27G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1336+27G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1062+27G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1336+27G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.229G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*503+27G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3421+27G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000548047
  gene symbol: DGKA
  hgvsc: ENST00000548047.1:n.1493G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1093+27G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2288+27G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.166+27G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1336+27G>C
  variant of: http://identifiers.org/hgnc/2849
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15021
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15636
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3069
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff

12-56335895-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56335895
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56335895
    reference: chr 12
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1062+28G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1336+28G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*503+28G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1093+28G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.166+28G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.2951+28G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2288+28G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000548047
  gene symbol: DGKA
  hgvsc: ENST00000548047.1:n.1494G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.230G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1336+28G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000446605
  ensembl transcript: ENST00000553084
  gene symbol: DGKA
  hgvsc: ENST00000553084.1:c.*990+28G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3421+28G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1336+28G>A
  variant of: http://identifiers.org/hgnc/2849
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15638
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3069
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8729
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3135
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

12-56335898-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56335898
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56335898
    reference: chr 12
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.2951+31T>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.166+31T>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000548047
  gene symbol: DGKA
  hgvsc: ENST00000548047.1:n.1497T>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*503+31T>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2288+31T>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1336+31T>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1336+31T>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3421+31T>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.233T>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1336+31T>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1093+31T>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1062+31T>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000446605
  ensembl transcript: ENST00000553084
  gene symbol: DGKA
  hgvsc: ENST00000553084.1:c.*990+31T>C
  variant of: http://identifiers.org/hgnc/2849
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3072
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8724
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3137
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
population: Latino
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

12-56335902-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56335902
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56335902
    reference: chr 12
allele count: 2
allele frequency: 1.647392178181938e-5
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.166+35G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1093+35G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000548047
  gene symbol: DGKA
  hgvsc: ENST00000548047.1:n.1501G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1336+35G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.2951+35G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1336+35G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1336+35G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*503+35G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1062+35G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000446605
  ensembl transcript: ENST00000553084
  gene symbol: DGKA
  hgvsc: ENST00000553084.1:c.*990+35G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2288+35G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.237G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3421+35G>A
  variant of: http://identifiers.org/hgnc/2849
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15014
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3073
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3138
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15639
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5424
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3269
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8724
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

12-56335906-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56335906
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56335906
    reference: chr 12
allele count: 15
allele frequency: 1.23566627125346e-4
allele num: 121392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.2951+39G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1062+39G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1336+39G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*503+39G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1093+39G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000548047
  gene symbol: DGKA
  hgvsc: ENST00000548047.1:n.1505G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1336+39G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3421+39G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.241G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.166+39G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2288+39G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000446605
  ensembl transcript: ENST00000553084
  gene symbol: DGKA
  hgvsc: ENST00000553084.1:c.*990+39G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1336+39G>A
  variant of: http://identifiers.org/hgnc/2849
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15639
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1845
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3136
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3080
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 8717
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS

12-56335906-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56335906
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56335906
    reference: chr 12
allele count: 3
allele frequency: 2.47133254250692e-5
allele num: 121392
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1093+39G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.166+39G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3421+39G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.241G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.2951+39G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1336+39G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000446605
  ensembl transcript: ENST00000553084
  gene symbol: DGKA
  hgvsc: ENST00000553084.1:c.*990+39G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1062+39G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000548047
  gene symbol: DGKA
  hgvsc: ENST00000548047.1:n.1505G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1336+39G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2288+39G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*503+39G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1336+39G>T
  variant of: http://identifiers.org/hgnc/2849
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3080
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8717
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15013
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15639
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1845
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD

12-56335913-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56335913
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56335914
    reference: chr 12
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: TG
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*504-44dupG
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1337-44dupG
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2289-44dupG
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.2952-44dupG
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1063-44dupG
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000548047
  gene symbol: DGKA
  hgvsc: ENST00000548047.1:n.1513dupG
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.249dupG
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1337-44dupG
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1094-44dupG
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.167-44dupG
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1337-44dupG
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000446605
  ensembl transcript: ENST00000553084
  gene symbol: DGKA
  hgvsc: ENST00000553084.1:c.*991-44dupG
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3422-44dupG
  variant of: http://identifiers.org/hgnc/2849
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15021
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15647
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3267
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3073
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8725
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum

12-56335922-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56335922
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56335922
    reference: chr 12
allele count: 3
allele frequency: 2.471251112063001e-5
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1094-36A>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000548047
  gene symbol: DGKA
  hgvsc: ENST00000548047.1:n.1521A>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1337-36A>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000446605
  ensembl transcript: ENST00000553084
  gene symbol: DGKA
  hgvsc: ENST00000553084.1:c.*991-36A>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.167-36A>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1337-36A>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*504-36A>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1337-36A>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1063-36A>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2289-36A>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.2952-36A>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.257A>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3422-36A>T
  variant of: http://identifiers.org/hgnc/2849
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15029
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8727
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15659
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3267
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1845
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3070
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
reference allele: A
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

12-56335924-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56335924
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56335924
    reference: chr 12
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.2952-34C>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1063-34C>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*504-34C>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000548047
  gene symbol: DGKA
  hgvsc: ENST00000548047.1:n.1523C>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1337-34C>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.259C>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2289-34C>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000446605
  ensembl transcript: ENST00000553084
  gene symbol: DGKA
  hgvsc: ENST00000553084.1:c.*991-34C>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1337-34C>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.167-34C>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3422-34C>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1094-34C>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1337-34C>G
  variant of: http://identifiers.org/hgnc/2849
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15661
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1845
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15031
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8731
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff

12-56335928-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56335928
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56335928
    reference: chr 12
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.167-30C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.263C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1337-30C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000548047
  gene symbol: DGKA
  hgvsc: ENST00000548047.1:n.1527C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2289-30C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1063-30C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.2952-30C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1337-30C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1094-30C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3422-30C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1337-30C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000446605
  ensembl transcript: ENST00000553084
  gene symbol: DGKA
  hgvsc: ENST00000553084.1:c.*991-30C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*504-30C>T
  variant of: http://identifiers.org/hgnc/2849
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15032
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15666
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8731
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3267
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3134
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

12-56335932-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56335932
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56335932
    reference: chr 12
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3422-26A>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2289-26A>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.267A>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000446605
  ensembl transcript: ENST00000553084
  gene symbol: DGKA
  hgvsc: ENST00000553084.1:c.*991-26A>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*504-26A>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1063-26A>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000548047
  gene symbol: DGKA
  hgvsc: ENST00000548047.1:n.1531A>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1337-26A>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1337-26A>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.167-26A>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.2952-26A>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1337-26A>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1094-26A>G
  variant of: http://identifiers.org/hgnc/2849
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3266
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3068
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15039
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15673
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5419
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD

12-56335934-CCTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56335934
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56335931
    reference: chr 12
allele count: 21
allele frequency: 1.729761787091035e-4
allele num: 121404
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3422-21_3422-19delTCT
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1337-21_1337-19delTCT
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000548047
  gene symbol: DGKA
  hgvsc: ENST00000548047.1:n.1536_1538delTCT
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.272_274delTCT
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*504-21_*504-19delTCT
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1063-21_1063-19delTCT
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.2952-21_2952-19delTCT
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000446605
  ensembl transcript: ENST00000553084
  gene symbol: DGKA
  hgvsc: ENST00000553084.1:c.*991-21_*991-19delTCT
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.167-21_167-19delTCT
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1337-21_1337-19delTCT
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2289-21_2289-19delTCT
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1094-21_1094-19delTCT
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1337-21_1337-19delTCT
  variant of: http://identifiers.org/hgnc/2849
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8723
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15043
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15674
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3070
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: CCTT
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum

12-56335935-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56335935
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56335935
    reference: chr 12
allele count: 59
allele frequency: 4.861328543414136e-4
allele num: 121366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.270C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1063-23C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1337-23C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*504-23C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.2952-23C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2289-23C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000446605
  ensembl transcript: ENST00000553084
  gene symbol: DGKA
  hgvsc: ENST00000553084.1:c.*991-23C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1337-23C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3422-23C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.167-23C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000548047
  gene symbol: DGKA
  hgvsc: ENST00000548047.1:n.1534C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1094-23C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1337-23C>T
  variant of: http://identifiers.org/hgnc/2849
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8715
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 15040
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15672
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3262
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3092
  bin: 9.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 5411
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

12-56335943-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56335943
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56335943
    reference: chr 12
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000446605
  ensembl transcript: ENST00000553084
  gene symbol: DGKA
  hgvsc: ENST00000553084.1:c.*991-15C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1063-15C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1337-15C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1337-15C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*504-15C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1337-15C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3422-15C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2289-15C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.2952-15C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.167-15C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000548047
  gene symbol: DGKA
  hgvsc: ENST00000548047.1:n.1542C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.278C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1094-15C>T
  variant of: http://identifiers.org/hgnc/2849
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15699
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5418
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3063
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8726
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

12-56335948-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56335948
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56335948
    reference: chr 12
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.167-10G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.2952-10G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.283G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2289-10G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1337-10G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3422-10G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1063-10G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1337-10G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*504-10G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000548047
  gene symbol: DGKA
  hgvsc: ENST00000548047.1:n.1547G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000446605
  ensembl transcript: ENST00000553084
  gene symbol: DGKA
  hgvsc: ENST00000553084.1:c.*991-10G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1094-10G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1337-10G>A
  variant of: http://identifiers.org/hgnc/2849
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15698
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8724
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15063
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3268
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5419
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
reference allele: G
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

12-56335949-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56335949
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56335949
    reference: chr 12
allele count: 6
allele frequency: 4.941932295527551e-5
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000548047
  gene symbol: DGKA
  hgvsc: ENST00000548047.1:n.1548C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*504-9C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1337-9C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.284C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.2952-9C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1063-9C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1337-9C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1337-9C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.167-9C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2289-9C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3422-9C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1094-9C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000446605
  ensembl transcript: ENST00000553084
  gene symbol: DGKA
  hgvsc: ENST00000553084.1:c.*991-9C>T
  variant of: http://identifiers.org/hgnc/2849
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15699
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15061
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3122
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8723
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3267
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3066
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

12-56335953-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56335953
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56335953
    reference: chr 12
allele count: 7
allele frequency: 5.765492702533522e-5
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1337-5C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.2952-5C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1337-5C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3422-5C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000446605
  ensembl transcript: ENST00000553084
  gene symbol: DGKA
  hgvsc: ENST00000553084.1:c.*991-5C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1337-5C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.167-5C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1063-5C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*504-5C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000548047
  gene symbol: DGKA
  hgvsc: ENST00000548047.1:n.1552C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.288C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1094-5C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2289-5C>T
  variant of: http://identifiers.org/hgnc/2849
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3122
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5415
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15062
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8722
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1337-5C>T
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum

12-56335954-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56335954
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56335954
    reference: chr 12
allele count: 41
allele frequency: 3.376987068610493e-4
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2289-4G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1337-4G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*504-4G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1337-4G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3422-4G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000548047
  gene symbol: DGKA
  hgvsc: ENST00000548047.1:n.1553G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1063-4G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.2952-4G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000446605
  ensembl transcript: ENST00000553084
  gene symbol: DGKA
  hgvsc: ENST00000553084.1:c.*991-4G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1337-4G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1094-4G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.167-4G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.289G>A
  variant of: http://identifiers.org/hgnc/2849
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15708
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15061
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3093
  bin: 9.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 3267
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1337-4G>A
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

12-56335964-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56335964
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56335964
    reference: chr 12
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000446605
  ensembl transcript: ENST00000553084
  gene symbol: DGKA
  hgvsc: ENST00000553084.1:c.*997C>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1343C>G
  hgvsp: ENSP00000450359.1:p.Ala448Gly
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000548047
  gene symbol: DGKA
  hgvsc: ENST00000548047.1:n.1563C>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3428C>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1343C>G
  hgvsp: ENSP00000377703.1:p.Ala448Gly
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1343C>G
  hgvsp: ENSP00000328405.5:p.Ala448Gly
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2295C>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.2958C>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1100C>G
  hgvsp: ENSP00000451743.1:p.Ala367Gly
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.173C>G
  hgvsp: ENSP00000451518.1:p.Ala58Gly
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1069C>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.299C>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*510C>G
  variant of: http://identifiers.org/hgnc/2849
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3272
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15075
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5414
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15721
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3062
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8716
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala448Gly
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS

12-56335971-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56335971
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56335971
    reference: chr 12
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1107G>T
  hgvsp: ENSP00000451743.1:p.Leu369Phe
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1350G>T
  hgvsp: ENSP00000328405.5:p.Leu450Phe
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000548047
  gene symbol: DGKA
  hgvsc: ENST00000548047.1:n.1570G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*517G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3435G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.2965G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.180G>T
  hgvsp: ENSP00000451518.1:p.Leu60Phe
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000446605
  ensembl transcript: ENST00000553084
  gene symbol: DGKA
  hgvsc: ENST00000553084.1:c.*1004G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1076G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1350G>T
  hgvsp: ENSP00000450359.1:p.Leu450Phe
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2302G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1350G>T
  hgvsp: ENSP00000377703.1:p.Leu450Phe
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.306G>T
  variant of: http://identifiers.org/hgnc/2849
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15723
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5413
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8716
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15075
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu450Phe
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

12-56335975-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56335975
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56335975
    reference: chr 12
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1354G>C
  hgvsp: ENSP00000377703.1:p.Val452Leu
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*521G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3439G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1354G>C
  hgvsp: ENSP00000328405.5:p.Val452Leu
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1080G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1354G>C
  hgvsp: ENSP00000450359.1:p.Val452Leu
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1111G>C
  hgvsp: ENSP00000451743.1:p.Val371Leu
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2306G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.184G>C
  hgvsp: ENSP00000451518.1:p.Val62Leu
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.310G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000446605
  ensembl transcript: ENST00000553084
  gene symbol: DGKA
  hgvsc: ENST00000553084.1:c.*1008G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.2969G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000548047
  gene symbol: DGKA
  hgvsc: ENST00000548047.1:n.1574G>C
  variant of: http://identifiers.org/hgnc/2849
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5412
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8716
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1824
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val452Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

12-56335987-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56335987
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56335987
    reference: chr 12
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1366G>A
  hgvsp: ENSP00000328405.5:p.Val456Ile
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1092G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1123G>A
  hgvsp: ENSP00000451743.1:p.Val375Ile
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2318G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000446605
  ensembl transcript: ENST00000553084
  gene symbol: DGKA
  hgvsc: ENST00000553084.1:c.*1020G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.322G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.196G>A
  hgvsp: ENSP00000451518.1:p.Val66Ile
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3451G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1366G>A
  hgvsp: ENSP00000450359.1:p.Val456Ile
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1366G>A
  hgvsp: ENSP00000377703.1:p.Val456Ile
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.2981G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000548047
  gene symbol: DGKA
  hgvsc: ENST00000548047.1:n.1586G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*533G>A
  variant of: http://identifiers.org/hgnc/2849
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8716
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15076
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1824
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3062
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5411
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15726
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val456Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

12-56335992-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56335992
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56335992
    reference: chr 12
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.201T>A
  hgvsp: ENST00000552903.2:c.201T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1371T>A
  hgvsp: ENST00000394147.1:c.1371T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000446605
  ensembl transcript: ENST00000553084
  gene symbol: DGKA
  hgvsc: ENST00000553084.1:c.*1025T>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3456T>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1097T>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1371T>A
  hgvsp: ENST00000331886.5:c.1371T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1371T>A
  hgvsp: ENST00000551156.1:c.1371T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.327T>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000548047
  gene symbol: DGKA
  hgvsc: ENST00000548047.1:n.1591T>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1128T>A
  hgvsp: ENST00000555218.1:c.1128T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2323T>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.2986T>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*538T>A
  variant of: http://identifiers.org/hgnc/2849
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5412
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15076
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3062
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ala457Ala
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

12-56335993-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56335993
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56335993
    reference: chr 12
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000446605
  ensembl transcript: ENST00000553084
  gene symbol: DGKA
  hgvsc: ENST00000553084.1:c.*1026G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.202G>A
  hgvsp: ENSP00000451518.1:p.Val68Met
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1372G>A
  hgvsp: ENSP00000328405.5:p.Val458Met
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1372G>A
  hgvsp: ENSP00000377703.1:p.Val458Met
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*539G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000548047
  gene symbol: DGKA
  hgvsc: ENST00000548047.1:n.1592G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1098G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1129G>A
  hgvsp: ENSP00000451743.1:p.Val377Met
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2324G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1372G>A
  hgvsp: ENSP00000450359.1:p.Val458Met
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.2987G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.328G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3457G>A
  variant of: http://identifiers.org/hgnc/2849
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1824
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15725
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15076
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val458Met
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

12-56336004-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56336004
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56336004
    reference: chr 12
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1383G>C
  hgvsp: ENST00000551156.1:c.1383G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*550G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000446605
  ensembl transcript: ENST00000553084
  gene symbol: DGKA
  hgvsc: ENST00000553084.1:c.*1037G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.339G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2335G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.213G>C
  hgvsp: ENST00000552903.2:c.213G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1383G>C
  hgvsp: ENST00000394147.1:c.1383G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.2998G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1383G>C
  hgvsp: ENST00000331886.5:c.1383G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000548047
  gene symbol: DGKA
  hgvsc: ENST00000548047.1:n.1603G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1109G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3468G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1140G>C
  hgvsp: ENST00000555218.1:c.1140G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8716
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1824
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3063
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15076
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3117
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu461Leu
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

12-56336019-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56336019
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56336019
    reference: chr 12
allele count: 10
allele frequency: 8.236553825879252e-5
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1398T>C
  hgvsp: ENST00000331886.5:c.1398T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1398T>C
  hgvsp: ENST00000551156.1:c.1398T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.3013T>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000548047
  gene symbol: DGKA
  hgvsc: ENST00000548047.1:n.1618T>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1155T>C
  hgvsp: ENST00000555218.1:c.1155T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3483T>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2350T>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1398T>C
  hgvsp: ENST00000394147.1:c.1398T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.228T>C
  hgvsp: ENST00000552903.2:c.228T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000446605
  ensembl transcript: ENST00000553084
  gene symbol: DGKA
  hgvsc: ENST00000553084.1:c.*1052T>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1124T>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*565T>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.354T>C
  variant of: http://identifiers.org/hgnc/2849
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3269
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3117
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15076
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15726
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8715
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp466Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

12-56336027-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56336027
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56336027
    reference: chr 12
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1406G>T
  hgvsp: ENSP00000450359.1:p.Arg469Leu
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1163G>T
  hgvsp: ENSP00000451743.1:p.Arg388Leu
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1406G>T
  hgvsp: ENSP00000377703.1:p.Arg469Leu
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2358G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.3021G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*573G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1406G>T
  hgvsp: ENSP00000328405.5:p.Arg469Leu
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.236G>T
  hgvsp: ENSP00000451518.1:p.Arg79Leu
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1132G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000446605
  ensembl transcript: ENST00000553084
  gene symbol: DGKA
  hgvsc: ENST00000553084.1:c.*1060G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.362G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000548047
  gene symbol: DGKA
  hgvsc: ENST00000548047.1:n.1626G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3491G>T
  variant of: http://identifiers.org/hgnc/2849
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3267
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3116
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3061
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15729
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5410
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15077
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg469Leu
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

12-56336070-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56336070
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56336070
    reference: chr 12
allele count: 1
allele frequency: 8.241577108195424e-6
allele num: 121336
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3511+23G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1152+23G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.3041+23G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.382+23G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2378+23G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.256+23G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000548047
  gene symbol: DGKA
  hgvsc: ENST00000548047.1:n.1669G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000446605
  ensembl transcript: ENST00000553084
  gene symbol: DGKA
  hgvsc: ENST00000553084.1:c.*1080+23G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*593+23G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1183+23G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1426+23G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1426+23G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1426+23G>T
  variant of: http://identifiers.org/hgnc/2849
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3223
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15368
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8616
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14719
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff

12-56336073-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56336073
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56336073
    reference: chr 12
allele count: 5
allele frequency: 4.121467902007979e-5
allele num: 121316
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1426+26G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1426+26G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000548047
  gene symbol: DGKA
  hgvsc: ENST00000548047.1:n.1672G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*593+26G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1152+26G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2378+26G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.382+26G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1183+26G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.3041+26G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000446605
  ensembl transcript: ENST00000553084
  gene symbol: DGKA
  hgvsc: ENST00000553084.1:c.*1080+26G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.256+26G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3511+26G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1426+26G>A
  variant of: http://identifiers.org/hgnc/2849
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8580
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14584
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3060
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15272
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3269
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

12-56336092-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56336092
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56336092
    reference: chr 12
allele count: 3
allele frequency: 2.476759737793703e-5
allele num: 121126
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1426+45G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.256+45G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.382+45G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.3041+45G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1183+45G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1426+45G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*593+45G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1152+45G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000446605
  ensembl transcript: ENST00000553084
  gene symbol: DGKA
  hgvsc: ENST00000553084.1:c.*1080+45G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000548047
  gene symbol: DGKA
  hgvsc: ENST00000548047.1:n.1691G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3511+45G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2378+45G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1426+45G>T
  variant of: http://identifiers.org/hgnc/2849
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3074
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3703
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6059
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11665
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12279
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8243
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3060
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum

12-56345357-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56345357
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56345357
    reference: chr 12
allele count: 7
allele frequency: 5.940257976917855e-5
allele num: 117840
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3636-50G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1427-50G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1427-50G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1184-50G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1427-50G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1153-50G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.257-50G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.3042-50G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.383-50G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000446605
  ensembl transcript: ENST00000553084
  gene symbol: DGKA
  hgvsc: ENST00000553084.1:c.*1081-50G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2503-50G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*594-50G>C
  variant of: http://identifiers.org/hgnc/2849
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2536
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16907
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4734
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13692
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7333
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4232
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/12-56345368-ACC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56345368
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56345366
    reference: chr 12
allele count: 10
allele frequency: 8.475007203756123e-5
allele num: 117994
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*594-37_*594-36delCC
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1184-37_1184-36delCC
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1427-37_1427-36delCC
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2503-37_2503-36delCC
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1427-37_1427-36delCC
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1153-37_1153-36delCC
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.3042-37_3042-36delCC
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.257-37_257-36delCC
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1427-37_1427-36delCC
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000446605
  ensembl transcript: ENST00000553084
  gene symbol: DGKA
  hgvsc: ENST00000553084.1:c.*1081-37_*1081-36delCC
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3636-37_3636-36delCC
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.383-37_383-36delCC
  variant of: http://identifiers.org/hgnc/2849
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7321
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17019
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5404
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2454
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2473
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4226
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13687
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: ACC
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

12-56345376-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56345376
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56345376
    reference: chr 12
allele count: 1
allele frequency: 8.462527926342156e-6
allele num: 118168
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*594-31C>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000446605
  ensembl transcript: ENST00000553084
  gene symbol: DGKA
  hgvsc: ENST00000553084.1:c.*1081-31C>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1184-31C>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1427-31C>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.383-31C>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1427-31C>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.3042-31C>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1427-31C>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1153-31C>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3636-31C>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2503-31C>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.257-31C>G
  variant of: http://identifiers.org/hgnc/2849
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17125
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13705
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2075
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6097
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7320
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2473
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4224
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

12-56345380-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56345380
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56345380
    reference: chr 12
allele count: 1
allele frequency: 8.44095551616443e-6
allele num: 118470
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000446605
  ensembl transcript: ENST00000553084
  gene symbol: DGKA
  hgvsc: ENST00000553084.1:c.*1081-27G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*594-27G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1153-27G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.383-27G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.3042-27G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1427-27G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2503-27G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3636-27G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.257-27G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1427-27G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1427-27G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1184-27G>T
  variant of: http://identifiers.org/hgnc/2849
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4224
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7320
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13721
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6529
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17178
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

12-56345382-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56345382
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56345382
    reference: chr 12
allele count: 1
allele frequency: 8.43668269636379e-6
allele num: 118530
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3636-25G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2503-25G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000446605
  ensembl transcript: ENST00000553084
  gene symbol: DGKA
  hgvsc: ENST00000553084.1:c.*1081-25G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1184-25G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1427-25G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1153-25G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.383-25G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*594-25G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1427-25G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.3042-25G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.257-25G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1427-25G>A
  variant of: http://identifiers.org/hgnc/2849
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6711
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7321
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17211
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2473
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4224
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13725
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

12-56345389-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56345389
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56345389
    reference: chr 12
allele count: 1
allele frequency: 8.397715821296607e-6
allele num: 119080
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000446605
  ensembl transcript: ENST00000553084
  gene symbol: DGKA
  hgvsc: ENST00000553084.1:c.*1081-18T>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1153-18T>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3636-18T>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1427-18T>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.383-18T>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2503-18T>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1427-18T>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.257-18T>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*594-18T>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.3042-18T>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1184-18T>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1427-18T>G
  variant of: http://identifiers.org/hgnc/2849
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13744
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7402
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4223
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2473
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17387
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7321
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

12-56345396-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56345396
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56345396
    reference: chr 12
allele count: 1
allele frequency: 8.364141253617491e-6
allele num: 119558
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1153-11T>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1427-11T>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1427-11T>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1184-11T>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.257-11T>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*594-11T>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.3042-11T>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2503-11T>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3636-11T>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1427-11T>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000446605
  ensembl transcript: ENST00000553084
  gene symbol: DGKA
  hgvsc: ENST00000553084.1:c.*1081-11T>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.383-11T>C
  variant of: http://identifiers.org/hgnc/2849
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 13762
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17536
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7325
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4225
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2473
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum

12-56345402-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56345402
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56345402
    reference: chr 12
allele count: 1
allele frequency: 8.330001332800213e-6
allele num: 120048
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1427-5C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.383-5C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1427-5C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*594-5C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3636-5C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1427-5C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000446605
  ensembl transcript: ENST00000553084
  gene symbol: DGKA
  hgvsc: ENST00000553084.1:c.*1081-5C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.257-5C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1184-5C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.3042-5C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2503-5C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1153-5C>T
  variant of: http://identifiers.org/hgnc/2849
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13784
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2473
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8262
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17730
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7324
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1427-5C>T
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD

12-56345408-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56345408
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56345408
    reference: chr 12
allele count: 3694
allele frequency: 3.067291085425801e-2
allele num: 120432
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1154T>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1185T>G
  hgvsp: ENST00000555218.1:c.1185T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1428T>G
  hgvsp: ENST00000551156.1:c.1428T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.3043T>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.258T>G
  hgvsp: ENST00000552903.2:c.258T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.384T>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3637T>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2504T>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*595T>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1428T>G
  hgvsp: ENST00000331886.5:c.1428T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1428T>G
  hgvsp: ENST00000394147.1:c.1428T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000446605
  ensembl transcript: ENST00000553084
  gene symbol: DGKA
  hgvsc: ENST00000553084.1:c.*1082T>G
  variant of: http://identifiers.org/hgnc/2849
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 17657
  bin: 2.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 6.25e1
  variant carriers: 96
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 5.25e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2208
  bin: 4.75e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 5.75e1
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 2332
  bin: 9.75e1
  variant carriers: 1835
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 8.25e1
  variant carriers: 144
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8431
  bin: 2.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.75e1
  variant carriers: 106
genotype depth: GenotypeDepth
  all individuals: 7094
  bin: 3.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 9.25e1
  variant carriers: 131
genotype quality: GenotypeQuality
hgvs: c.1428T>G
num of homozygotes: 583
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: Latino
reference allele: T
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

12-56345414-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56345414
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56345414
    reference: chr 12
allele count: 1
allele frequency: 8.281710670156027e-6
allele num: 120748
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1434A>G
  hgvsp: ENST00000394147.1:c.1434A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1434A>G
  hgvsp: ENST00000331886.5:c.1434A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*601A>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2510A>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.3049A>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1434A>G
  hgvsp: ENST00000551156.1:c.1434A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1160A>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.264A>G
  hgvsp: ENST00000552903.2:c.264A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1191A>G
  hgvsp: ENST00000555218.1:c.1191A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000446605
  ensembl transcript: ENST00000553084
  gene symbol: DGKA
  hgvsc: ENST00000553084.1:c.*1088A>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.390A>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3643A>G
  variant of: http://identifiers.org/hgnc/2849
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8913
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7408
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14331
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2280
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18777
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu478Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: African
population: East Asian
reference allele: A
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

12-56345420-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56345420
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56345420
    reference: chr 12
allele count: 1
allele frequency: 8.265692417053776e-6
allele num: 120982
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1440G>T
  hgvsp: ENSP00000377703.1:p.Gln480His
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1440G>T
  hgvsp: ENSP00000450359.1:p.Gln480His
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1166G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1440G>T
  hgvsp: ENSP00000328405.5:p.Gln480His
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.396G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.270G>T
  hgvsp: ENSP00000451518.1:p.Gln90His
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1197G>T
  hgvsp: ENSP00000451743.1:p.Gln399His
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3649G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2516G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.3055G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*607G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000446605
  ensembl transcript: ENST00000553084
  gene symbol: DGKA
  hgvsc: ENST00000553084.1:c.*1094G>T
  variant of: http://identifiers.org/hgnc/2849
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8983
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18918
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2279
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7410
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14346
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln480His
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

12-56345427-GC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56345427
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56345426
    reference: chr 12
allele count: 1
allele frequency: 8.253412786187088e-6
allele num: 121162
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000446605
  ensembl transcript: ENST00000553084
  gene symbol: DGKA
  hgvsc: ENST00000553084.1:c.*1102delC
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*615delC
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.404delC
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1174delC
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2524delC
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.3063delC
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1448delC
  hgvsp: ENSP00000377703.1:p.Ala483GlufsTer7
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1448delC
  hgvsp: ENSP00000328405.5:p.Ala483GlufsTer7
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1205delC
  hgvsp: ENSP00000451743.1:p.Ala402GlufsTer7
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.278delC
  hgvsp: ENSP00000451518.1:p.Ala93GlufsTer7
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1448delC
  hgvsp: ENSP00000450359.1:p.Ala483GlufsTer7
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3657delC
  variant of: http://identifiers.org/hgnc/2849
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2279
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7413
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9069
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18990
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14354
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala483GlufsTer7
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: GC
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/12-56345429-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56345429
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56345429
    reference: chr 12
allele count: 1
allele frequency: 8.251233559417133e-6
allele num: 121194
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000446605
  ensembl transcript: ENST00000553084
  gene symbol: DGKA
  hgvsc: ENST00000553084.1:c.*1103A>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2525A>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1175A>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1206A>C
  hgvsp: ENST00000555218.1:c.1206A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1449A>C
  hgvsp: ENST00000394147.1:c.1449A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*616A>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.279A>C
  hgvsp: ENST00000552903.2:c.279A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1449A>C
  hgvsp: ENST00000551156.1:c.1449A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1449A>C
  hgvsp: ENST00000331886.5:c.1449A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.405A>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.3064A>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3658A>C
  variant of: http://identifiers.org/hgnc/2849
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9061
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7411
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19031
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala483Ala
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

12-56345468-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56345468
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56345468
    reference: chr 12
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.444T>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1488T>C
  hgvsp: ENST00000551156.1:c.1488T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000446605
  ensembl transcript: ENST00000553084
  gene symbol: DGKA
  hgvsc: ENST00000553084.1:c.*1142T>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1214T>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1245T>C
  hgvsp: ENST00000555218.1:c.1245T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1488T>C
  hgvsp: ENST00000331886.5:c.1488T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.3103T>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*655T>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3697T>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1488T>C
  hgvsp: ENST00000394147.1:c.1488T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.318T>C
  hgvsp: ENST00000552903.2:c.318T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2564T>C
  variant of: http://identifiers.org/hgnc/2849
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19119
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9136
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14376
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2279
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His496His
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ

12-56345469-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56345469
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56345469
    reference: chr 12
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*656A>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3698A>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1489A>G
  hgvsp: ENSP00000328405.5:p.Met497Val
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1215A>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2565A>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000446605
  ensembl transcript: ENST00000553084
  gene symbol: DGKA
  hgvsc: ENST00000553084.1:c.*1143A>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.3104A>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1489A>G
  hgvsp: ENSP00000450359.1:p.Met497Val
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1489A>G
  hgvsp: ENSP00000377703.1:p.Met497Val
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.445A>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1246A>G
  hgvsp: ENSP00000451743.1:p.Met416Val
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.319A>G
  hgvsp: ENSP00000451518.1:p.Met107Val
  variant of: http://identifiers.org/hgnc/2849
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14375
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2279
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9134
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7409
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19119
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met497Val
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum

12-56345476-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56345476
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56345476
    reference: chr 12
allele count: 3
allele frequency: 2.471210398853358e-5
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1496G>A
  hgvsp: ENSP00000450359.1:p.Arg499Gln
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.3111G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1253G>A
  hgvsp: ENSP00000451743.1:p.Arg418Gln
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.326G>A
  hgvsp: ENSP00000451518.1:p.Arg109Gln
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2572G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*663G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1496G>A
  hgvsp: ENSP00000328405.5:p.Arg499Gln
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1496G>A
  hgvsp: ENSP00000377703.1:p.Arg499Gln
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3705G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.452G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000446605
  ensembl transcript: ENST00000553084
  gene symbol: DGKA
  hgvsc: ENST00000553084.1:c.*1150G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1222G>A
  variant of: http://identifiers.org/hgnc/2849
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14379
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7409
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9129
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg499Gln
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/12-56345503-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56345503
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56345503
    reference: chr 12
allele count: 1
allele frequency: 8.241033755274261e-6
allele num: 121344
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1523A>C
  hgvsp: ENSP00000450359.1:p.Gln508Pro
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.353A>C
  hgvsp: ENSP00000451518.1:p.Gln118Pro
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1280A>C
  hgvsp: ENSP00000451743.1:p.Gln427Pro
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.479A>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2599A>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.3138A>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*690A>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1523A>C
  hgvsp: ENSP00000377703.1:p.Gln508Pro
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1523A>C
  hgvsp: ENSP00000328405.5:p.Gln508Pro
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3732A>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1249A>C
  variant of: http://identifiers.org/hgnc/2849
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19106
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2278
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9071
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14370
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7409
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln508Pro
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/12-56345513-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56345513
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56345513
    reference: chr 12
allele count: 1
allele frequency: 8.243207596940122e-6
allele num: 121312
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.363A>C
  hgvsp: ENSP00000451518.1:p.Glu121Asp
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1290A>C
  hgvsp: ENSP00000451743.1:p.Glu430Asp
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3742A>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2609A>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1259A>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1533A>C
  hgvsp: ENSP00000377703.1:p.Glu511Asp
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1533A>C
  hgvsp: ENSP00000450359.1:p.Glu511Asp
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1533A>C
  hgvsp: ENSP00000328405.5:p.Glu511Asp
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*700A>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.489A>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.3148A>C
  variant of: http://identifiers.org/hgnc/2849
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9057
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19088
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14365
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7405
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2278
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4126
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu511Asp
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

http://identifiers.org/exac.variant/12-56345515-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56345515
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56345515
    reference: chr 12
allele count: 1
allele frequency: 8.244566830458728e-6
allele num: 121292
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1535A>C
  hgvsp: ENSP00000328405.5:p.Lys512Thr
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3744A>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.3150A>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.365A>C
  hgvsp: ENSP00000451518.1:p.Lys122Thr
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1261A>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1535A>C
  hgvsp: ENSP00000377703.1:p.Lys512Thr
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2611A>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1292A>C
  hgvsp: ENSP00000451743.1:p.Lys431Thr
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1535A>C
  hgvsp: ENSP00000450359.1:p.Lys512Thr
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*702A>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.491A>C
  variant of: http://identifiers.org/hgnc/2849
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2278
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7405
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14363
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19090
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9033
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Lys512Thr
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ

12-56345525-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56345525
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56345525
    reference: chr 12
allele count: 1
allele frequency: 8.249463784853985e-6
allele num: 121220
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.375A>T
  hgvsp: ENST00000552903.2:c.375A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1302A>T
  hgvsp: ENST00000555218.1:c.1302A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.501A>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1545A>T
  hgvsp: ENST00000551156.1:c.1545A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.3160A>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2621A>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1545A>T
  hgvsp: ENST00000394147.1:c.1545A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1545A>T
  hgvsp: ENST00000331886.5:c.1545A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*712A>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1271A>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3754A>T
  variant of: http://identifiers.org/hgnc/2849
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19045
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14346
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8979
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2278
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7402
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro515Pro
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

12-56345531-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56345531
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56345531
    reference: chr 12
allele count: 4
allele frequency: 3.301092661671013e-5
allele num: 121172
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3760C>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1277C>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1551C>G
  hgvsp: ENST00000394147.1:c.1551C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.507C>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2627C>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.381C>G
  hgvsp: ENST00000552903.2:c.381C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1551C>G
  hgvsp: ENST00000331886.5:c.1551C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*718C>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1551C>G
  hgvsp: ENST00000551156.1:c.1551C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1308C>G
  hgvsp: ENST00000555218.1:c.1308C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.3166C>G
  variant of: http://identifiers.org/hgnc/2849
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4119
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7399
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19020
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8920
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14340
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro517Pro
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/12-56345540-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56345540
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56345540
    reference: chr 12
allele count: 1
allele frequency: 8.262823902696986e-6
allele num: 121024
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1560C>A
  hgvsp: ENST00000551156.1:c.1560C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1560C>A
  hgvsp: ENST00000331886.5:c.1560C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.516C>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1317C>A
  hgvsp: ENST00000555218.1:c.1317C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3769C>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.390C>A
  hgvsp: ENST00000552903.2:c.390C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2636C>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1286C>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.3175C>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1560C>A
  hgvsp: ENST00000394147.1:c.1560C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*727C>A
  variant of: http://identifiers.org/hgnc/2849
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14304
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4114
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8764
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18968
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2275
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7395
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile520Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

12-56345541-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56345541
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56345541
    reference: chr 12
allele count: 339
allele frequency: 2.802162376630462e-3
allele num: 120978
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1318A>G
  hgvsp: ENSP00000451743.1:p.Ile440Val
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1287A>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1561A>G
  hgvsp: ENSP00000450359.1:p.Ile521Val
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3770A>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*728A>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1561A>G
  hgvsp: ENSP00000328405.5:p.Ile521Val
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1561A>G
  hgvsp: ENSP00000377703.1:p.Ile521Val
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2637A>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.391A>G
  hgvsp: ENSP00000451518.1:p.Ile131Val
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.3176A>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.517A>G
  variant of: http://identifiers.org/hgnc/2849
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14287
  bin: 3.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 9.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 4094
  bin: 4.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2268
  bin: 4.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 6.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 8697
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7375
  bin: 3.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 5.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18943
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 5.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
hgvs: p.Ile521Val
num of homozygotes: 3
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum

12-56345564-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56345564
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56345564
    reference: chr 12
allele count: 2
allele frequency: 1.664752201634787e-5
allele num: 120138
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1341C>T
  hgvsp: ENST00000555218.1:c.1341C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1584C>T
  hgvsp: ENST00000331886.5:c.1584C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1584C>T
  hgvsp: ENST00000394147.1:c.1584C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3793C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1584C>T
  hgvsp: ENST00000551156.1:c.1584C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.540C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1310C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.3199C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*751C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2660C>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.414C>T
  hgvsp: ENST00000552903.2:c.414C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2849
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4074
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7329
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7752
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14116
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18459
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly528Gly
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ

12-56345580-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56345580
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56345580
    reference: chr 12
allele count: 1
allele frequency: 8.376191513242758e-6
allele num: 119386
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1313+13G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3809G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.3202+13G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1587+13G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2676G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1587+13G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1587+13G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.543+13G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.417+13G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1344+13G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*754+13G>T
  variant of: http://identifiers.org/hgnc/2849
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7166
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6562
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17558
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2216
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4012
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13516
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2999
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8003
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

12-56345587-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56345587
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56345587
    reference: chr 12
allele count: 7
allele frequency: 5.893347252858274e-5
allele num: 118778
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1587+20G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.543+20G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.417+20G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1313+20G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.3202+20G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2683G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*754+20G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3816G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1587+20G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1587+20G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1344+20G>C
  variant of: http://identifiers.org/hgnc/2849
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2951
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6021
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16519
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13047
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7036
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3752
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2186
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3971
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

12-56345588-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56345588
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56345588
    reference: chr 12
allele count: 1
allele frequency: 8.418358756776778e-6
allele num: 118788
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.3202+21G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.417+21G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2684G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1587+21G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1344+21G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.543+21G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1313+21G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*754+21G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3817G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1587+21G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1587+21G>A
  variant of: http://identifiers.org/hgnc/2849
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2932
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3957
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6130
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3761
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12968
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7019
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16521
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1144
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP

12-56345594-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56345594
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56345594
    reference: chr 12
allele count: 1
allele frequency: 8.445803280349994e-6
allele num: 118402
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.417+27G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.3202+27G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1344+27G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1587+27G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3823G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1313+27G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*754+27G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1587+27G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2690G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1587+27G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.543+27G>C
  variant of: http://identifiers.org/hgnc/2849
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15605
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6055
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3936
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4092
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4004
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12565
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6920
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

12-56345596-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56345596
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56345596
    reference: chr 12
allele count: 1
allele frequency: 8.446373971653969e-6
allele num: 118394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1587+29G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.543+29G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.3202+29G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1313+29G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1344+29G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1587+29G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3825G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.417+29G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2692G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*754+29G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1587+29G>A
  variant of: http://identifiers.org/hgnc/2849
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6888
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4073
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15648
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4025
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6175
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12436
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3923
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2169
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7536
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

12-56345601-A-AG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56345601
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56345602
    reference: chr 12
allele count: 4
allele frequency: 3.404313264906637e-5
allele num: 117498
alternate allele: AG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1313+41dupG
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1587+41dupG
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2704dupG
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*754+41dupG
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1587+41dupG
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3837dupG
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1587+41dupG
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.417+41dupG
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.3202+41dupG
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.543+41dupG
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1344+41dupG
  variant of: http://identifiers.org/hgnc/2849
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4128
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3891
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5484
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12021
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14647
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6068
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6830
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3292
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

12-56345603-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56345603
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56345603
    reference: chr 12
allele count: 33
allele frequency: 2.805311389564242e-4
allele num: 117634
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1587+36G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1587+36G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1587+36G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2699G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1313+36G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1344+36G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*754+36G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.3202+36G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.543+36G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3832G>A
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.417+36G>A
  variant of: http://identifiers.org/hgnc/2849
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4146
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6761
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6209
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14256
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3866
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11807
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4213
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

12-56345603-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56345603
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56345603
    reference: chr 12
allele count: 1
allele frequency: 8.500943604740126e-6
allele num: 117634
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2699G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.417+36G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1344+36G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1313+36G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1587+36G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1587+36G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*754+36G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1587+36G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3832G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.3202+36G>C
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.543+36G>C
  variant of: http://identifiers.org/hgnc/2849
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6209
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14256
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3866
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11807
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6761
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3146
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

12-56345603-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56345603
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56345603
    reference: chr 12
allele count: 2
allele frequency: 1.700188720948025e-5
allele num: 117634
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1344+36G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1313+36G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2699G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.417+36G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3832G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*754+36G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1587+36G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.543+36G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1587+36G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1587+36G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.3202+36G>T
  variant of: http://identifiers.org/hgnc/2849
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11807
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14256
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6209
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3866
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6761
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1554
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

12-56345606-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56345606
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56345606
    reference: chr 12
allele count: 129
allele frequency: 1.096845506334495e-3
allele num: 117610
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3835G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2702G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.3202+39G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.417+39G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1587+39G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1587+39G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*754+39G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.543+39G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1344+39G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1313+39G>T
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1587+39G>T
  variant of: http://identifiers.org/hgnc/2849
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4172
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 13646
  bin: 2.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11325
  bin: 3.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 6644
  bin: 2.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2137
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6666
  bin: 1.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 6697
  bin: 3.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3834
  bin: 4.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 5.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

12-56345609-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56345609
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56345609
    reference: chr 12
allele count: 1
allele frequency: 8.558712769599453e-6
allele num: 116840
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2705C>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1313+42C>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.543+42C>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.417+42C>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3838C>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1587+42C>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1587+42C>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.3202+42C>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*754+42C>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1587+42C>G
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1344+42C>G
  variant of: http://identifiers.org/hgnc/2849
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7344
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4204
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3797
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13107
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6617
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6910
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10948
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP

12-56345618-C-CAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56345618
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 56345620
    reference: chr 12
allele count: 4
allele frequency: 3.450834239177321e-5
allele num: 115914
alternate allele: CAG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000549079
  gene symbol: DGKA
  hgvsc: ENST00000549079.2:n.1313+54_1313+55dupAG
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551739
  gene symbol: DGKA
  hgvsc: ENST00000551739.1:n.2717_2718dupAG
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551585
  gene symbol: DGKA
  hgvsc: ENST00000551585.1:n.543+54_543+55dupAG
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000552478
  gene symbol: DGKA
  hgvsc: ENST00000552478.1:n.3850_3851dupAG
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl transcript: ENST00000551296
  gene symbol: DGKA
  hgvsc: ENST00000551296.1:n.3202+54_3202+55dupAG
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000377703
  ensembl transcript: ENST00000394147
  gene symbol: DGKA
  hgvsc: ENST00000394147.1:c.1587+54_1587+55dupAG
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000450359
  ensembl transcript: ENST00000551156
  gene symbol: DGKA
  hgvsc: ENST00000551156.1:c.1587+54_1587+55dupAG
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451518
  ensembl transcript: ENST00000552903
  gene symbol: DGKA
  hgvsc: ENST00000552903.2:c.417+54_417+55dupAG
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000385792
  ensembl transcript: ENST00000402956
  gene symbol: DGKA
  hgvsc: ENST00000402956.3:c.*754+54_*754+55dupAG
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000328405
  ensembl transcript: ENST00000331886
  gene symbol: DGKA
  hgvsc: ENST00000331886.5:c.1587+54_1587+55dupAG
  variant of: http://identifiers.org/hgnc/2849
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000065357
  ensembl protein: ENSP00000451743
  ensembl transcript: ENST00000555218
  gene symbol: DGKA
  hgvsc: ENST00000555218.1:c.1344+54_1344+55dupAG
  variant of: http://identifiers.org/hgnc/2849
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3731
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6703
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4188
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9877
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6458
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2097
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11831
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9926
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3688
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: C

GenotypeDepth
all individuals: 408
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 908
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 658
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3073
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8684
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5243
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3431
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15896
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1923
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4141
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18360
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3014
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.777675063554426e-4
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.01e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.539e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.81e0

FS
type: SiteQuality
SIO_000300: 1.919e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.9e-2

DP
type: SiteQuality
SIO_000300: 2.548675e6

GenotypeDepth
all individuals: 3279
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 659
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8729
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 252
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1924
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4140
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3430
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3013
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15894
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18359
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8683
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5244
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.053e0

DP
type: SiteQuality
SIO_000300: 2.548221e6

QD
type: SiteQuality
SIO_000300: 1.351e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.02e0

MQRankSum
type: SiteQuality
SIO_000300: -1.531e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.83e-1

FS
type: SiteQuality
SIO_000300: 4.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

GenotypeDepth
all individuals: 3278
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 515
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15021
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1237
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1923
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15895
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5244
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4140
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18361
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8682
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3014
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3430
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.0e-1

MQ
type: SiteQuality
SIO_000300: 5.98e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.37e-1

QD
type: SiteQuality
SIO_000300: 1.191e1

MQRankSum
type: SiteQuality
SIO_000300: 1.17e0

DP
type: SiteQuality
SIO_000300: 2.548183e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.18e0

GenotypeDepth
all individuals: 15637
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 411
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15018
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 660
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1923
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4138
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18360
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3426
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3012
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8680
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5243
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15890
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.967e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.66e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.83e-1

FS
type: SiteQuality
SIO_000300: 2.259e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.77e0

DP
type: SiteQuality
SIO_000300: 2.548795e6

VQSLOD
type: SiteQuality
SIO_000300: 1.43e0

QD
type: SiteQuality
SIO_000300: 1.343e1

GenotypeDepth
all individuals: 310
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 913
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 411
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 269
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1926
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8686
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4137
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18361
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3426
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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MQRankSum
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VQSLOD
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DP
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FS
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InbreedingCoeff
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QD
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ReadPosRankSum
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BaseQRankSum
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SIO_000300: 1.4e0

MQ
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SIO_000300: 5.982e1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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variant carriers: 15

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 13
allele frequency: 1.123013130615066e-3
allele num: 11576
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

QD
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DP
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BaseQRankSum
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MQ
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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SIO_000300: -4.27e-1

FS
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SIO_000300: 1.155e0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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African
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East Asian
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
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allele num: 66728
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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VQSLOD
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BaseQRankSum
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MQRankSum
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FS
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InbreedingCoeff
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ReadPosRankSum
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MQ
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DP
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ClippingRankSum
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SIO_000300: -4.27e-1

QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

DP
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VQSLOD
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ClippingRankSum
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QD
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InbreedingCoeff
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MQ
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ReadPosRankSum
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FS
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SIO_000300: 3.761e0

MQRankSum
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SIO_000300: -1.3e-1

BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.495594317568783e-5
allele num: 66732
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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Other
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FS
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MQ
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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QD
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DP
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MQRankSum
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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East Asian
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South Asian
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Latino
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allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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QD
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ReadPosRankSum
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VQSLOD
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MQ
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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FS
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DP
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InbreedingCoeff
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

African
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East Asian
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European (Finnish)
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num of homozygotes: 0

Latino
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Other
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South Asian
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MQ
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FS
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DP
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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QD
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VQSLOD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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South Asian
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Other
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African
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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BaseQRankSum
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QD
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FS
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ClippingRankSum
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DP
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MQ
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ReadPosRankSum
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MQRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 2.018066500096098e-3
allele num: 10406
num of homozygotes: 0

East Asian
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num of homozygotes: 0

European (Finnish)
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Other
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South Asian
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European (Non-Finnish)
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Latino
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FS
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ReadPosRankSum
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MQ
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DP
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ClippingRankSum
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QD
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

Other
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African
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Latino
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South Asian
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European (Finnish)
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European (Non-Finnish)
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allele frequency: 8.540861278432078e-4
allele num: 66738
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InbreedingCoeff
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ClippingRankSum
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MQ
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MQRankSum
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FS
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QD
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BaseQRankSum
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VQSLOD
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DP
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

South Asian
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East Asian
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African
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Other
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
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MQRankSum
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MQ
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VQSLOD
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FS
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InbreedingCoeff
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ReadPosRankSum
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QD
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ClippingRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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num of homozygotes: 0

European (Finnish)
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Latino
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Other
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African
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DP
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FS
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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MQ
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MQRankSum
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VQSLOD
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

European (Finnish)
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East Asian
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allele num: 8654
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African
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South Asian
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European (Non-Finnish)
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Other
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VQSLOD
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FS
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MQ
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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DP
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InbreedingCoeff
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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Latino
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European (Non-Finnish)
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African
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Other
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East Asian
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QD
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MQRankSum
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DP
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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MQ
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FS
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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num of homozygotes: 0

African
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East Asian
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South Asian
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Latino
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European (Finnish)
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QD
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DP
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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VQSLOD
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BaseQRankSum
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FS
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ReadPosRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Finnish)
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Latino
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South Asian
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European (Non-Finnish)
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Other
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MQRankSum
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MQ
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BaseQRankSum
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ClippingRankSum
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QD
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ReadPosRankSum
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DP
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InbreedingCoeff
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VQSLOD
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FS
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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Other
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South Asian
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African
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European (Finnish)
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East Asian
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European (Non-Finnish)
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DP
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InbreedingCoeff
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MQRankSum
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MQ
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ClippingRankSum
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VQSLOD
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QD
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BaseQRankSum
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FS
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ReadPosRankSum
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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European (Finnish)
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African
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Other
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East Asian
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European (Non-Finnish)
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MQ
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ClippingRankSum
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DP
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BaseQRankSum
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InbreedingCoeff
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QD
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MQRankSum
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VQSLOD
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FS
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Other
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South Asian
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Latino
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African
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European (Finnish)
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East Asian
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VQSLOD
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ReadPosRankSum
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MQRankSum
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FS
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BaseQRankSum
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DP
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ClippingRankSum
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InbreedingCoeff
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MQ
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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East Asian
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African
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European (Finnish)
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Latino
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Other
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MQRankSum
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DP
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QD
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VQSLOD
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InbreedingCoeff
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MQ
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FS
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ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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European (Finnish)
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East Asian
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InbreedingCoeff
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ReadPosRankSum
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DP
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MQ
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VQSLOD
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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European (Finnish)
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South Asian
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VQSLOD
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InbreedingCoeff
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MQRankSum
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QD
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MQ
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FS
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DP
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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South Asian
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East Asian
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European (Finnish)
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VQSLOD
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FS
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ReadPosRankSum
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QD
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MQRankSum
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BaseQRankSum
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MQ
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DP
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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Other
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South Asian
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European (Non-Finnish)
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Latino
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European (Finnish)
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QD
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MQRankSum
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VQSLOD
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DP
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FS
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MQ
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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Latino
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European (Non-Finnish)
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European (Finnish)
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South Asian
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ReadPosRankSum
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MQRankSum
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FS
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BaseQRankSum
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DP
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MQ
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VQSLOD
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ClippingRankSum
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QD
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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East Asian
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European (Non-Finnish)
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FS
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MQRankSum
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VQSLOD
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ReadPosRankSum
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MQ
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InbreedingCoeff
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DP
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ClippingRankSum
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European (Non-Finnish)
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South Asian
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East Asian
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InbreedingCoeff
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VQSLOD
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MQRankSum
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FS
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DP
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 10197
bin: 9.75e1
variant carriers: 7

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65738
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

South Asian
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allele count: 7
allele frequency: 4.968767745599091e-4
allele num: 14088
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.017259e6

FS
type: SiteQuality
SIO_000300: 3.893e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

VQSLOD
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SIO_000300: 9.73e-1

InbreedingCoeff
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SIO_000300: 3.6e-3

ClippingRankSum
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ReadPosRankSum
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SIO_000300: 8.36e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.34e-1

QD
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SIO_000300: 1.505e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.26e-1

GenotypeDepth
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 10

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14202
num of homozygotes: 0

European (Non-Finnish)
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allele count: 6
allele frequency: 9.122700319294511e-5
allele num: 65770
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.658103148541626e-5
allele num: 10354
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 3
allele frequency: 2.596952908587258e-4
allele num: 11552
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.37e-1

QD
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SIO_000300: 1.705e1

DP
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MQRankSum
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ClippingRankSum
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MQ
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SIO_000300: 6.002e1

InbreedingCoeff
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SIO_000300: 8.500000000000001e-3

VQSLOD
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SIO_000300: 5.33e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
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SIO_000300: -8.799999999999999e-2

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65804
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele num: 11556
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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South Asian
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num of homozygotes: 0

DP
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InbreedingCoeff
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MQ
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SIO_000300: 5.975e1

BaseQRankSum
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ClippingRankSum
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MQRankSum
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FS
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VQSLOD
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QD
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SIO_000300: 1.29e1

ReadPosRankSum
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SIO_000300: 1.45e0

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14534
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65882
num of homozygotes: 0

Other
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num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.157675387821255e-4
allele num: 8638
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.319e0

MQ
type: SiteQuality
SIO_000300: 5.79e1

VQSLOD
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InbreedingCoeff
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QD
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ClippingRankSum
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SIO_000300: -3.4e-2

MQRankSum
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BaseQRankSum
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SIO_000300: -1.26e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-2

DP
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SIO_000300: 2.034441e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 139
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 65888
num of homozygotes: 0

Other
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South Asian
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MQ
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SIO_000300: 6.0e1

DP
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QD
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InbreedingCoeff
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MQRankSum
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VQSLOD
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FS
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BaseQRankSum
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ClippingRankSum
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SIO_000300: 8.2e-2

ReadPosRankSum
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SIO_000300: -2.99e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 6.680919294494922e-5
allele num: 14968
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66032
num of homozygotes: 0

African
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Latino
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Other
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MQRankSum
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BaseQRankSum
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DP
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InbreedingCoeff
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FS
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ClippingRankSum
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VQSLOD
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MQ
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 1
allele frequency: 1.156871818602499e-4
allele num: 8644
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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African
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European (Finnish)
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InbreedingCoeff
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FS
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DP
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ClippingRankSum
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BaseQRankSum
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QD
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MQ
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VQSLOD
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ReadPosRankSum
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MQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
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GenotypeQuality
all individuals: 4814
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508341126429153e-5
allele num: 66298
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15628
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.063771e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

VQSLOD
type: SiteQuality
SIO_000300: 5.06e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.389999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.144e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.283e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

FS
type: SiteQuality
SIO_000300: 1.38e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

QD
type: SiteQuality
SIO_000300: 1.253e1

GenotypeDepth
all individuals: 13597
bin: 3.25e1
variant carriers: 41

GenotypeDepth
all individuals: 320
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 308
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variant carriers: 130

GenotypeDepth
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variant carriers: 142

GenotypeDepth
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variant carriers: 140

GenotypeDepth
all individuals: 3991
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variant carriers: 46

GenotypeQuality
all individuals: 98
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8606
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variant carriers: 3

GenotypeQuality
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bin: 5.25e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 3092

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1612
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4704
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 21
allele frequency: 1.322085117098967e-3
allele num: 15884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 55
allele frequency: 8.281137075403517e-4
allele num: 66416
num of homozygotes: 0

African
type: Population
allele count: 3409
allele frequency: 3.277884615384615e-1
allele num: 10400
num of homozygotes: 579

East Asian
type: Population
allele count: 27
allele frequency: 3.120665742024965e-3
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 10
allele frequency: 1.121076233183856e-2
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 171
allele frequency: 1.477449455676516e-2
allele num: 11574
num of homozygotes: 4

QD
type: SiteQuality
SIO_000300: 1.771e1

MQ
type: SiteQuality
SIO_000300: 5.962e1

MQRankSum
type: SiteQuality
SIO_000300: 2.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.196e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.64e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.739e-1

DP
type: SiteQuality
SIO_000300: 2.235858e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.71e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.38e-1

GenotypeDepth
all individuals: 4128
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 380
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variant carriers: 0

GenotypeDepth
all individuals: 114
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 38
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variant carriers: 0

GenotypeQuality
all individuals: 58
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variant carriers: 0

GenotypeQuality
all individuals: 75
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variant carriers: 0

GenotypeQuality
all individuals: 4905
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 1
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GenotypeQuality
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GenotypeQuality
all individuals: 0
bin: 2.5e0
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GenotypeQuality
all individuals: 2273
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GenotypeQuality
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GenotypeQuality
all individuals: 8327
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variant carriers: 1

GenotypeQuality
all individuals: 39
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variant carriers: 0

GenotypeQuality
all individuals: 3795
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variant carriers: 0

GenotypeQuality
all individuals: 3684
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 9093
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variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503668952243474e-5
allele num: 66504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16098
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.022134e6

FS
type: SiteQuality
SIO_000300: 3.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.04e0

VQSLOD
type: SiteQuality
SIO_000300: 5.4e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.45e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.92e-1

QD
type: SiteQuality
SIO_000300: 1.382e1

MQ
type: SiteQuality
SIO_000300: 5.983e1

GenotypeDepth
all individuals: 537
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 577
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 71
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variant carriers: 1

GenotypeQuality
all individuals: 224
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variant carriers: 0

GenotypeQuality
all individuals: 1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 37
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GenotypeQuality
all individuals: 1691
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variant carriers: 0

GenotypeQuality
all individuals: 8326
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4900
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variant carriers: 0

GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 16
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 26417
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GenotypeQuality
all individuals: 2272
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variant carriers: 0

GenotypeQuality
all individuals: 43
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variant carriers: 0

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
all individuals: 9129
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502223290469895e-5
allele num: 66568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16262
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.025635e6

FS
type: SiteQuality
SIO_000300: 3.974e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.45e-1

MQ
type: SiteQuality
SIO_000300: 5.869e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.477e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.794e0

MQRankSum
type: SiteQuality
SIO_000300: 1.54e0

QD
type: SiteQuality
SIO_000300: 1.055e1

GenotypeDepth
all individuals: 80
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 239
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variant carriers: 0

GenotypeDepth
all individuals: 1250
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variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 1691
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
all individuals: 2272
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4896
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 132
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variant carriers: 0

GenotypeQuality
all individuals: 35
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variant carriers: 0

GenotypeQuality
all individuals: 3684
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 29
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variant carriers: 0

GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 3803
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variant carriers: 0

GenotypeQuality
all individuals: 8325
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501005673801447e-5
allele num: 66622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16386
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.785e0

MQ
type: SiteQuality
SIO_000300: 5.985e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.0e-3

FS
type: SiteQuality
SIO_000300: 4.061e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.53e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.54e-1

QD
type: SiteQuality
SIO_000300: 1.536e1

VQSLOD
type: SiteQuality
SIO_000300: 1.85e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.028106e6

GenotypeDepth
all individuals: 14362
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 239
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
all individuals: 3685
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 16
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
all individuals: 14
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GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8324
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variant carriers: 1

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1691
bin: 8.75e1
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GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 1
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GenotypeQuality
all individuals: 26633
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GenotypeQuality
all individuals: 9156
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variant carriers: 0

GenotypeQuality
all individuals: 27
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variant carriers: 0

GenotypeQuality
all individuals: 2272
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4897
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.244e1

MQRankSum
type: SiteQuality
SIO_000300: 8.070000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.86e0

VQSLOD
type: SiteQuality
SIO_000300: 1.26e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

DP
type: SiteQuality
SIO_000300: 2.028911e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.53e-1

GenotypeDepth
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bin: 9.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4
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GenotypeQuality
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GenotypeQuality
all individuals: 9170
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variant carriers: 0

GenotypeQuality
all individuals: 1691
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.108e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.95e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.71e-1

QD
type: SiteQuality
SIO_000300: 1.021e1

DP
type: SiteQuality
SIO_000300: 2.031435e6

MQRankSum
type: SiteQuality
SIO_000300: -7.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 114
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 379
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variant carriers: 0

GenotypeDepth
all individuals: 196
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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South Asian
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Other
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European (Non-Finnish)
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East Asian
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ClippingRankSum
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InbreedingCoeff
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MQ
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BaseQRankSum
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DP
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VQSLOD
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FS
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MQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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African
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Latino
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Other
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East Asian
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VQSLOD
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QD
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BaseQRankSum
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ClippingRankSum
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MQ
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InbreedingCoeff
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DP
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FS
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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East Asian
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Other
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European (Finnish)
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European (Non-Finnish)
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MQ
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VQSLOD
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FS
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QD
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BaseQRankSum
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DP
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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European (Finnish)
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African
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East Asian
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European (Non-Finnish)
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Other
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MQ
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QD
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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FS
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VQSLOD
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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European (Finnish)
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European (Non-Finnish)
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East Asian
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Other
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African
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FS
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ReadPosRankSum
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ClippingRankSum
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DP
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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Other
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South Asian
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East Asian
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Latino
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European (Finnish)
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ReadPosRankSum
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MQRankSum
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FS
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MQ
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QD
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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European (Finnish)
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East Asian
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South Asian
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European (Non-Finnish)
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Other
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MQRankSum
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VQSLOD
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BaseQRankSum
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FS
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MQ
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InbreedingCoeff
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ReadPosRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66552
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.157943492357573e-4
allele num: 8636
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11550
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Other
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allele frequency: 0.0e0
allele num: 900
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South Asian
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allele frequency: 0.0e0
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QD
type: SiteQuality
SIO_000300: 1.2e1

MQRankSum
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SIO_000300: 8.129999999999999e-1

FS
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SIO_000300: 4.547e0

MQ
type: SiteQuality
SIO_000300: 5.944e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.33e0

DP
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SIO_000300: 2.022703e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.919e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.77e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.55e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.333333333333334e-3
allele num: 900
num of homozygotes: 0

European (Finnish)
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allele count: 5
allele frequency: 7.559721802237678e-4
allele num: 6614
num of homozygotes: 0

African
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allele count: 7
allele frequency: 6.773756531836656e-4
allele num: 10334
num of homozygotes: 0

Latino
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allele count: 49
allele frequency: 4.244629244629245e-3
allele num: 11544
num of homozygotes: 0

European (Non-Finnish)
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allele count: 273
allele frequency: 4.102795311091073e-3
allele num: 66540
num of homozygotes: 3

South Asian
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allele frequency: 1.218472036066772e-4
allele num: 16414
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.4e-1

VQSLOD
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ClippingRankSum
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SIO_000300: -5.1e-2

QD
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DP
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SIO_000300: 2.025014e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.22e-1

InbreedingCoeff
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SIO_000300: 7.4e-3

MQ
type: SiteQuality
SIO_000300: 5.969e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.83e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15972
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10292
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.673026886383348e-5
allele num: 11530
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.510117789187557e-5
allele num: 66220
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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QD
type: SiteQuality
SIO_000300: 1.106e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.07e-1

VQSLOD
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SIO_000300: 1.0e0

ClippingRankSum
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SIO_000300: -1.159e0

ReadPosRankSum
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SIO_000300: 7.82e-1

DP
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SIO_000300: 1.990348e6

InbreedingCoeff
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SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.63e-1

FS
type: SiteQuality
SIO_000300: 1.795e0

MQ
type: SiteQuality
SIO_000300: 5.953e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 190
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514967882680887e-5
allele num: 66008
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10146
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
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VQSLOD
type: SiteQuality
SIO_000300: -4.077e-1

FS
type: SiteQuality
SIO_000300: 1.255e0

MQ
type: SiteQuality
SIO_000300: 5.909e1

InbreedingCoeff
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SIO_000300: -4.0e-4

BaseQRankSum
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SIO_000300: -4.369e0

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

QD
type: SiteQuality
SIO_000300: 8.52e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

DP
type: SiteQuality
SIO_000300: 1.949556e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.68e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
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allele count: 6
allele frequency: 9.120204292576154e-5
allele num: 65788
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10078
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.131221719457014e-3
allele num: 884
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.044e0

FS
type: SiteQuality
SIO_000300: 6.23e-1

QD
type: SiteQuality
SIO_000300: 1.297e1

InbreedingCoeff
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MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e-1

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.64e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15328
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10070
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.51952590791673e-5
allele num: 65810
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
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QD
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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VQSLOD
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ClippingRankSum
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FS
type: SiteQuality
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DP
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SIO_000300: 1.917497e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10018
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.522533495736906e-5
allele num: 65680
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: 9.96e-1

VQSLOD
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InbreedingCoeff
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MQ
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ReadPosRankSum
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DP
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FS
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ClippingRankSum
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QD
type: SiteQuality
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BaseQRankSum
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SIO_000300: 1.99e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 1
allele frequency: 8.706251088281386e-5
allele num: 11486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65678
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10026
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.603e0

QD
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InbreedingCoeff
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SIO_000300: 2.4e-3

MQ
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FS
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SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.15e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.674e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.461e0

DP
type: SiteQuality
SIO_000300: 1.894334e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.320000000000001e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 675
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GenotypeQuality
all individuals: 1000
bin: 4.25e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14732
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.119763777118203e-5
allele num: 65362
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9962
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.14e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.95e0

DP
type: SiteQuality
SIO_000300: 1.874011e6

QD
type: SiteQuality
SIO_000300: 6.899999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.94e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.68e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

GenotypeQuality
all individuals: 208
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 33

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14732
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 6.112469437652812e-4
allele num: 11452
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 24
allele frequency: 3.667033370003667e-4
allele num: 65448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.006420545746388e-4
allele num: 9968
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.5e-2

DP
type: SiteQuality
SIO_000300: 1.864462e6

MQ
type: SiteQuality
SIO_000300: 5.961e1

VQSLOD
type: SiteQuality
SIO_000300: 3.6e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.9e-2

FS
type: SiteQuality
SIO_000300: 5.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.6e-2

QD
type: SiteQuality
SIO_000300: 1.248e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.45e-1

GenotypeQuality
all individuals: 2345
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2572
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1554
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GenotypeQuality
all individuals: 16617
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9968
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.787944610371979e-5
allele num: 14732
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.5e-2

MQ
type: SiteQuality
SIO_000300: 5.961e1

DP
type: SiteQuality
SIO_000300: 1.864462e6

FS
type: SiteQuality
SIO_000300: 5.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.6e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.45e-1

QD
type: SiteQuality
SIO_000300: 1.248e1

GenotypeQuality
all individuals: 273
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1685
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9968
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65448
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.787944610371979e-5
allele num: 14732
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.732099196646873e-5
allele num: 11452
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.94e-1

QD
type: SiteQuality
SIO_000300: 1.248e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.45e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

DP
type: SiteQuality
SIO_000300: 1.864462e6

VQSLOD
type: SiteQuality
SIO_000300: 3.6e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.6e-2

MQ
type: SiteQuality
SIO_000300: 5.961e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.9e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1547
bin: 8.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14734
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.584912581000123e-5
allele num: 65432
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

Latino
type: Population
allele count: 10
allele frequency: 8.745845723281442e-4
allele num: 11434
num of homozygotes: 0

African
type: Population
allele count: 116
allele frequency: 1.16325711993582e-2
allele num: 9972
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.305e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e-2

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.98e1

DP
type: SiteQuality
SIO_000300: 1.849326e6

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.1e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.119e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6578
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14418
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.535202186127913e-5
allele num: 65138
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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MQ
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FS
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ClippingRankSum
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.836541e6