17-3495338-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495338
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495338
    reference: chr 17
allele count: 1
allele frequency: 9.187292137515388e-6
allele num: 108846
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.284+23C>G
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.284+23C>G
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.284+23C>G
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.284+23C>G
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.208+23C>G
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.284+23C>G
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1568+23C>G
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.284+23C>G
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.284+23C>G
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.301+23C>G
  variant of: http://identifiers.org/hgnc/12716
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25708
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6216
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2686
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3538
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5007
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15206
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 657
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2579
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

17-3495339-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495339
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495339
    reference: chr 17
allele count: 1
allele frequency: 9.16254352208173e-6
allele num: 109140
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.284+22C>G
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.301+22C>G
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.284+22C>G
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.284+22C>G
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.284+22C>G
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1568+22C>G
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.208+22C>G
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.284+22C>G
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.284+22C>G
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.284+22C>G
  variant of: http://identifiers.org/hgnc/12716
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5006
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15284
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3523
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2576
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25918
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1874
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD

17-3495342-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495342
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495342
    reference: chr 17
allele count: 1
allele frequency: 9.145783793671118e-6
allele num: 109340
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1568+19C>G
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.284+19C>G
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.284+19C>G
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.284+19C>G
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.208+19C>G
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.284+19C>G
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.301+19C>G
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.284+19C>G
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.284+19C>G
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.284+19C>G
  variant of: http://identifiers.org/hgnc/12716
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5683
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3571
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26398
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4933
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15531
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1707
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1793
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS

17-3495345-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495345
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495345
    reference: chr 17
allele count: 1
allele frequency: 9.096532401848415e-6
allele num: 109932
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.284+16G>A
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1568+16G>A
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.284+16G>A
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.284+16G>A
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.208+16G>A
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.301+16G>A
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.284+16G>A
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.284+16G>A
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.284+16G>A
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.284+16G>A
  variant of: http://identifiers.org/hgnc/12716
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3585
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5092
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15833
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27365
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4723
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 907
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 942
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5307
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: DP

17-3495350-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495350
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495350
    reference: chr 17
allele count: 6
allele frequency: 5.409108939454041e-5
allele num: 110924
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.284+11G>C
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.284+11G>C
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.284+11G>C
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.284+11G>C
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.301+11G>C
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.284+11G>C
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.284+11G>C
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1568+11G>C
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.208+11G>C
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.284+11G>C
  variant of: http://identifiers.org/hgnc/12716
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4106
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4330
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3705
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16414
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28672
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1619
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 922
  bin: 9.75e1
  variant carriers: 6
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

17-3495351-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495351
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495351
    reference: chr 17
allele count: 2
allele frequency: 1.793850679869408e-5
allele num: 111492
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.284+10C>T
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.284+10C>T
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.284+10C>T
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.301+10C>T
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.208+10C>T
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.284+10C>T
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.284+10C>T
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.284+10C>T
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.284+10C>T
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1568+10C>T
  variant of: http://identifiers.org/hgnc/1492
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29152
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3789
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16545
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3731
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5781
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

17-3495352-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495352
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495352
    reference: chr 17
allele count: 153
allele frequency: 1.369274552972131e-3
allele num: 111738
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.284+9G>A
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.284+9G>A
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.284+9G>A
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.208+9G>A
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.301+9G>A
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1568+9G>A
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.284+9G>A
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.284+9G>A
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.284+9G>A
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.284+9G>A
  variant of: http://identifiers.org/hgnc/12716
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3768
  bin: 3.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 29386
  bin: 2.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 4.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 1.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 4023
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 16670
  bin: 2.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 3553
  bin: 1.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1173
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1054
  bin: 9.75e1
  variant carriers: 148
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

17-3495353-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495353
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495353
    reference: chr 17
allele count: 4
allele frequency: 3.564871753738659e-5
allele num: 112206
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.284+8C>T
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.284+8C>T
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.284+8C>T
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.208+8C>T
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.284+8C>T
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.284+8C>T
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.284+8C>T
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.301+8C>T
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1568+8C>T
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.284+8C>T
  variant of: http://identifiers.org/hgnc/12716
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3803
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3893
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16858
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29680
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3310
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 4.25e1
  variant carriers: 0
hgvs: c.284+8C>T
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

17-3495358-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495358
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495358
    reference: chr 17
allele count: 15
allele frequency: 1.322774652110266e-4
allele num: 113398
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.284+3A>G
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.284+3A>G
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.208+3A>G
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.284+3A>G
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.284+3A>G
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.284+3A>G
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.301+3A>G
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.284+3A>G
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1568+3A>G
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.284+3A>G
  variant of: http://identifiers.org/hgnc/12716
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17134
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 30885
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2634
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3817
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3429
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 925
  bin: 2.75e1
  variant carriers: 0
hgvs: c.284+3A>G
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP

17-3495362-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495362
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495362
    reference: chr 17
allele count: 165
allele frequency: 1.448613720566803e-3
allele num: 113902
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.283A>G
  hgvsp: ENSP00000311692.5:p.Arg95Gly
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.300A>G
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.283A>G
  hgvsp: ENSP00000409627.2:p.Arg95Gly
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.283A>G
  hgvsp: ENSP00000382659.4:p.Arg95Gly
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.283A>G
  hgvsp: ENSP00000461007.1:p.Arg95Gly
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1567A>G
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.283A>G
  hgvsp: ENSP00000459962.1:p.Arg95Gly
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.283A>G
  hgvsp: ENSP00000382661.3:p.Arg95Gly
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.283A>G
  hgvsp: ENSP00000459042.1:p.Arg95Gly
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.207A>G
  hgvsp: ENST00000174621.6:c.207A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3169
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 1.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 3.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17515
  bin: 2.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 30832
  bin: 2.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2345
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3938
  bin: 3.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Arg95Gly
num of homozygotes: 2
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: African
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

17-3495364-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495364
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495364
    reference: chr 17
allele count: 1
allele frequency: 8.761631065239105e-6
allele num: 114134
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.281C>T
  hgvsp: ENSP00000409627.2:p.Ala94Val
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.281C>T
  hgvsp: ENSP00000382661.3:p.Ala94Val
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.298C>T
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.205C>T
  hgvsp: ENSP00000174621.6:p.Pro69Ser
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.281C>T
  hgvsp: ENSP00000382659.4:p.Ala94Val
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.281C>T
  hgvsp: ENSP00000311692.5:p.Ala94Val
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.281C>T
  hgvsp: ENSP00000461007.1:p.Ala94Val
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.281C>T
  hgvsp: ENSP00000459962.1:p.Ala94Val
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.281C>T
  hgvsp: ENSP00000459042.1:p.Ala94Val
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1565C>T
  variant of: http://identifiers.org/hgnc/1492
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3953
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17693
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2279
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3095
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30848
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1776
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala94Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD

17-3495368-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495368
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495368
    reference: chr 17
allele count: 3
allele frequency: 2.618715083798883e-5
allele num: 114560
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.277G>A
  hgvsp: ENSP00000382659.4:p.Gly93Ser
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.277G>A
  hgvsp: ENSP00000461007.1:p.Gly93Ser
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.277G>A
  hgvsp: ENSP00000311692.5:p.Gly93Ser
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.277G>A
  hgvsp: ENSP00000459962.1:p.Gly93Ser
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.277G>A
  hgvsp: ENSP00000459042.1:p.Gly93Ser
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1561G>A
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.294G>A
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.277G>A
  hgvsp: ENSP00000382661.3:p.Gly93Ser
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.201G>A
  hgvsp: ENST00000174621.6:c.201G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.277G>A
  hgvsp: ENSP00000409627.2:p.Gly93Ser
  variant of: http://identifiers.org/hgnc/12716
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2110
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18045
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2860
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4066
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30760
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1031
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly93Ser
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

17-3495369-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495369
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495369
    reference: chr 17
allele count: 9
allele frequency: 7.826767545003914e-5
allele num: 114990
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.276C>T
  hgvsp: ENST00000576351.1:c.276C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.276C>T
  hgvsp: ENST00000425167.2:c.276C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.276C>T
  hgvsp: ENST00000399759.3:c.276C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.276C>T
  hgvsp: ENST00000310522.5:c.276C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.276C>T
  hgvsp: ENST00000571088.1:c.276C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.200C>T
  hgvsp: ENSP00000174621.6:p.Pro67Leu
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.293C>T
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.276C>T
  hgvsp: ENST00000572705.1:c.276C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1560C>T
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.276C>T
  hgvsp: ENST00000399756.4:c.276C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2694
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30933
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4099
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18183
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2004
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1828
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro67Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

17-3495374-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495374
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495374
    reference: chr 17
allele count: 8599
allele frequency: 7.406928867986287e-2
allele num: 116094
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.271C>T
  hgvsp: ENSP00000461007.1:p.Pro91Ser
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.271C>T
  hgvsp: ENSP00000459962.1:p.Pro91Ser
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1555C>T
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.271C>T
  hgvsp: ENSP00000382659.4:p.Pro91Ser
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.271C>T
  hgvsp: ENSP00000382661.3:p.Pro91Ser
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.288C>T
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.271C>T
  hgvsp: ENSP00000409627.2:p.Pro91Ser
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.271C>T
  hgvsp: ENSP00000459042.1:p.Pro91Ser
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.271C>T
  hgvsp: ENSP00000311692.5:p.Pro91Ser
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.195C>T
  hgvsp: ENST00000174621.6:c.195C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 1.25e1
  variant carriers: 134
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 3.75e1
  variant carriers: 1136
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 5.25e1
  variant carriers: 651
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17467
  bin: 2.75e1
  variant carriers: 941
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 1.75e1
  variant carriers: 373
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 192
genotype depth: GenotypeDepth
  all individuals: 4167
  bin: 3.25e1
  variant carriers: 1078
genotype depth: GenotypeDepth
  all individuals: 27998
  bin: 2.25e1
  variant carriers: 648
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 5.75e1
  variant carriers: 472
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 7.5e0
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 4.75e1
  variant carriers: 844
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 4.25e1
  variant carriers: 991
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.25e1
  variant carriers: 302
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 121
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 2.75e1
  variant carriers: 10
hgvs: p.Pro91Ser
num of homozygotes: 501
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

17-3495376-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495376
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495376
    reference: chr 17
allele count: 1
allele frequency: 8.601558602418759e-6
allele num: 116258
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1553G>A
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.269G>A
  hgvsp: ENSP00000459962.1:p.Gly90Asp
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.269G>A
  hgvsp: ENSP00000461007.1:p.Gly90Asp
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.193G>A
  hgvsp: ENSP00000174621.6:p.Ala65Thr
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.269G>A
  hgvsp: ENSP00000382659.4:p.Gly90Asp
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.269G>A
  hgvsp: ENSP00000459042.1:p.Gly90Asp
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.269G>A
  hgvsp: ENSP00000311692.5:p.Gly90Asp
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.269G>A
  hgvsp: ENSP00000382661.3:p.Gly90Asp
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.269G>A
  hgvsp: ENSP00000409627.2:p.Gly90Asp
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.286G>A
  variant of: http://identifiers.org/hgnc/12716
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2111
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29626
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20586
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4171
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly90Asp
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD

17-3495377-C-CGT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495377
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495379
    reference: chr 17
allele count: 1
allele frequency: 8.592984687301287e-6
allele num: 116374
alternate allele: CGT
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.266_267dupAC
  hgvsp: ENSP00000409627.2:p.Gly90ThrfsTer72
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.266_267dupAC
  hgvsp: ENSP00000461007.1:p.Gly90ThrfsTer72
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.266_267dupAC
  hgvsp: ENSP00000459042.1:p.Gly90ThrfsTer72
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.283_284dupAC
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.190_191dupAC
  hgvsp: ENSP00000174621.6:p.Ala65ArgfsTer25
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.266_267dupAC
  hgvsp: ENSP00000382661.3:p.Gly90ThrfsTer72
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.266_267dupAC
  hgvsp: ENSP00000382659.4:p.Gly90ThrfsTer72
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.266_267dupAC
  hgvsp: ENSP00000459962.1:p.Gly90ThrfsTer72
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.266_267dupAC
  hgvsp: ENSP00000311692.5:p.Gly90ThrfsTer72
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1550_*1551dupAC
  variant of: http://identifiers.org/hgnc/1492
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29654
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4168
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20675
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6337
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly90ThrfsTer72
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
population: Latino
reference allele: C
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

17-3495377-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495377
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495377
    reference: chr 17
allele count: 2
allele frequency: 1.718596937460257e-5
allele num: 116374
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1552G>A
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.268G>A
  hgvsp: ENSP00000461007.1:p.Gly90Ser
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.268G>A
  hgvsp: ENSP00000459042.1:p.Gly90Ser
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.268G>A
  hgvsp: ENSP00000311692.5:p.Gly90Ser
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.268G>A
  hgvsp: ENSP00000382661.3:p.Gly90Ser
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.268G>A
  hgvsp: ENSP00000382659.4:p.Gly90Ser
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.268G>A
  hgvsp: ENSP00000409627.2:p.Gly90Ser
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.268G>A
  hgvsp: ENSP00000459962.1:p.Gly90Ser
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.192G>A
  hgvsp: ENST00000174621.6:c.192G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.285G>A
  variant of: http://identifiers.org/hgnc/12716
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29654
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20675
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4168
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Gly90Ser
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-3495378-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495378
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495378
    reference: chr 17
allele count: 16
allele frequency: 1.372448104306056e-4
allele num: 116580
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.284C>T
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1551C>T
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.191C>T
  hgvsp: ENSP00000174621.6:p.Thr64Met
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.267C>T
  hgvsp: ENST00000572705.1:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.267C>T
  hgvsp: ENST00000399756.4:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.267C>T
  hgvsp: ENST00000425167.2:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.267C>T
  hgvsp: ENST00000399759.3:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.267C>T
  hgvsp: ENST00000571088.1:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.267C>T
  hgvsp: ENST00000576351.1:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.267C>T
  hgvsp: ENST00000310522.5:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29741
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4197
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20781
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2448
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr64Met
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD

17-3495382-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495382
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495382
    reference: chr 17
allele count: 2
allele frequency: 1.711010351612627e-5
allele num: 116890
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.280G>A
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.187G>A
  hgvsp: ENSP00000174621.6:p.Glu63Lys
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.263G>A
  hgvsp: ENSP00000409627.2:p.Gly88Glu
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.263G>A
  hgvsp: ENSP00000461007.1:p.Gly88Glu
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.263G>A
  hgvsp: ENSP00000382659.4:p.Gly88Glu
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.263G>A
  hgvsp: ENSP00000311692.5:p.Gly88Glu
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1547G>A
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.263G>A
  hgvsp: ENSP00000382661.3:p.Gly88Glu
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.263G>A
  hgvsp: ENSP00000459042.1:p.Gly88Glu
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.263G>A
  hgvsp: ENSP00000459962.1:p.Gly88Glu
  variant of: http://identifiers.org/hgnc/1492
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4192
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20910
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29998
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gly88Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP

17-3495384-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495384
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495384
    reference: chr 17
allele count: 17
allele frequency: 1.452767950229879e-4
allele num: 117018
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1545A>G
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.261A>G
  hgvsp: ENST00000571088.1:c.261A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.261A>G
  hgvsp: ENST00000425167.2:c.261A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.185A>G
  hgvsp: ENSP00000174621.6:p.Gln62Arg
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.278A>G
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.261A>G
  hgvsp: ENST00000399756.4:c.261A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.261A>G
  hgvsp: ENST00000572705.1:c.261A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.261A>G
  hgvsp: ENST00000576351.1:c.261A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.261A>G
  hgvsp: ENST00000399759.3:c.261A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.261A>G
  hgvsp: ENST00000310522.5:c.261A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4182
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20991
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30110
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gln62Arg
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

17-3495387-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495387
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495387
    reference: chr 17
allele count: 3
allele frequency: 2.559726962457338e-5
allele num: 117200
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.182G>C
  hgvsp: ENSP00000174621.6:p.Gly61Ala
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.258G>C
  hgvsp: ENSP00000311692.5:p.Arg86Ser
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.258G>C
  hgvsp: ENSP00000459042.1:p.Arg86Ser
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.258G>C
  hgvsp: ENSP00000459962.1:p.Arg86Ser
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1542G>C
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.258G>C
  hgvsp: ENSP00000382659.4:p.Arg86Ser
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.258G>C
  hgvsp: ENSP00000461007.1:p.Arg86Ser
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.258G>C
  hgvsp: ENSP00000409627.2:p.Arg86Ser
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.258G>C
  hgvsp: ENSP00000382661.3:p.Arg86Ser
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.275G>C
  variant of: http://identifiers.org/hgnc/12716
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30218
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21084
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4200
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg86Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

17-3495389-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495389
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495389
    reference: chr 17
allele count: 1
allele frequency: 8.518613169775961e-6
allele num: 117390
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.256A>G
  hgvsp: ENSP00000459962.1:p.Arg86Gly
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.180A>G
  hgvsp: ENST00000174621.6:c.180A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.256A>G
  hgvsp: ENSP00000459042.1:p.Arg86Gly
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.256A>G
  hgvsp: ENSP00000409627.2:p.Arg86Gly
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.256A>G
  hgvsp: ENSP00000382661.3:p.Arg86Gly
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.256A>G
  hgvsp: ENSP00000311692.5:p.Arg86Gly
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.256A>G
  hgvsp: ENSP00000461007.1:p.Arg86Gly
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1540A>G
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.273A>G
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.256A>G
  hgvsp: ENSP00000382659.4:p.Arg86Gly
  variant of: http://identifiers.org/hgnc/12716
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30364
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21132
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4203
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg86Gly
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum

17-3495391-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495391
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495391
    reference: chr 17
allele count: 3252
allele frequency: 2.765682405769493e-2
allele num: 117584
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.178A>G
  hgvsp: ENSP00000174621.6:p.Arg60Gly
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.254A>G
  hgvsp: ENSP00000409627.2:p.Gln85Arg
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.254A>G
  hgvsp: ENSP00000461007.1:p.Gln85Arg
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.271A>G
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1538A>G
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.254A>G
  hgvsp: ENSP00000382659.4:p.Gln85Arg
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.254A>G
  hgvsp: ENSP00000311692.5:p.Gln85Arg
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.254A>G
  hgvsp: ENSP00000382661.3:p.Gln85Arg
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.254A>G
  hgvsp: ENSP00000459042.1:p.Gln85Arg
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.254A>G
  hgvsp: ENSP00000459962.1:p.Gln85Arg
  variant of: http://identifiers.org/hgnc/1492
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20641
  bin: 2.75e1
  variant carriers: 251
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.25e1
  variant carriers: 118
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29271
  bin: 2.25e1
  variant carriers: 178
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 1.75e1
  variant carriers: 108
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 326
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 3.75e1
  variant carriers: 333
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 4.75e1
  variant carriers: 367
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 1.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 4.25e1
  variant carriers: 364
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 7.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 4020
  bin: 3.25e1
  variant carriers: 289
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.25e1
  variant carriers: 196
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 5.75e1
  variant carriers: 277
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 168
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 5.25e1
  variant carriers: 2
hgvs: p.Gln85Arg
num of homozygotes: 46
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

17-3495400-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495400
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495400
    reference: chr 17
allele count: 2
allele frequency: 1.695432504831983e-5
allele num: 117964
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.245T>C
  hgvsp: ENSP00000382661.3:p.Ile82Thr
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.245T>C
  hgvsp: ENSP00000459042.1:p.Ile82Thr
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.169T>C
  hgvsp: ENSP00000174621.6:p.Ser57Pro
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.245T>C
  hgvsp: ENSP00000461007.1:p.Ile82Thr
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.245T>C
  hgvsp: ENSP00000409627.2:p.Ile82Thr
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.245T>C
  hgvsp: ENSP00000459962.1:p.Ile82Thr
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1529T>C
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.245T>C
  hgvsp: ENSP00000311692.5:p.Ile82Thr
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.245T>C
  hgvsp: ENSP00000382659.4:p.Ile82Thr
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.262T>C
  variant of: http://identifiers.org/hgnc/12716
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30123
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4126
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22307
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45958
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ile82Thr
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-3495401-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495401
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495401
    reference: chr 17
allele count: 4
allele frequency: 3.390807520811081e-5
allele num: 117966
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.244A>G
  hgvsp: ENSP00000409627.2:p.Ile82Val
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.244A>G
  hgvsp: ENSP00000382661.3:p.Ile82Val
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1528A>G
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.244A>G
  hgvsp: ENSP00000382659.4:p.Ile82Val
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.244A>G
  hgvsp: ENSP00000461007.1:p.Ile82Val
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.244A>G
  hgvsp: ENSP00000459962.1:p.Ile82Val
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.168A>G
  hgvsp: ENST00000174621.6:c.168A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.261A>G
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.244A>G
  hgvsp: ENSP00000459042.1:p.Ile82Val
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.244A>G
  hgvsp: ENSP00000311692.5:p.Ile82Val
  variant of: http://identifiers.org/hgnc/12716
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30116
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22316
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4129
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ile82Val
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum

17-3495401-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495401
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495402
    reference: chr 17
allele count: 1
allele frequency: 8.477018802027703e-6
allele num: 117966
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.243dupT
  hgvsp: ENSP00000382659.4:p.Ile82TyrfsTer33
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.243dupT
  hgvsp: ENSP00000382661.3:p.Ile82TyrfsTer33
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.260dupT
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.167dupT
  hgvsp: ENSP00000174621.6:p.Leu56PhefsTer87
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.243dupT
  hgvsp: ENSP00000459962.1:p.Ile82TyrfsTer33
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.243dupT
  hgvsp: ENSP00000461007.1:p.Ile82TyrfsTer33
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.243dupT
  hgvsp: ENSP00000459042.1:p.Ile82TyrfsTer33
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.243dupT
  hgvsp: ENSP00000311692.5:p.Ile82TyrfsTer33
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1527dupT
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.243dupT
  hgvsp: ENSP00000409627.2:p.Ile82TyrfsTer33
  variant of: http://identifiers.org/hgnc/12716
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22316
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30116
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4129
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ile82TyrfsTer33
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

17-3495415-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495415
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495415
    reference: chr 17
allele count: 3
allele frequency: 2.541511352084039e-5
allele num: 118040
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.230C>T
  hgvsp: ENSP00000382659.4:p.Thr77Ile
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.230C>T
  hgvsp: ENSP00000461007.1:p.Thr77Ile
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.230C>T
  hgvsp: ENSP00000409627.2:p.Thr77Ile
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.247C>T
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.154C>T
  hgvsp: ENSP00000174621.6:p.Gln52Ter
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.230C>T
  hgvsp: ENSP00000311692.5:p.Thr77Ile
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.230C>T
  hgvsp: ENSP00000459042.1:p.Thr77Ile
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.230C>T
  hgvsp: ENSP00000459962.1:p.Thr77Ile
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1514C>T
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.230C>T
  hgvsp: ENSP00000382661.3:p.Thr77Ile
  variant of: http://identifiers.org/hgnc/12716
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4155
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29523
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22592
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gln52Ter
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

17-3495419-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495419
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495419
    reference: chr 17
allele count: 2
allele frequency: 1.695461250233126e-5
allele num: 117962
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.226A>G
  hgvsp: ENSP00000459962.1:p.Ile76Val
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.226A>G
  hgvsp: ENSP00000382659.4:p.Ile76Val
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1510A>G
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.226A>G
  hgvsp: ENSP00000382661.3:p.Ile76Val
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.226A>G
  hgvsp: ENSP00000311692.5:p.Ile76Val
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.226A>G
  hgvsp: ENSP00000461007.1:p.Ile76Val
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.226A>G
  hgvsp: ENSP00000409627.2:p.Ile76Val
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.226A>G
  hgvsp: ENSP00000459042.1:p.Ile76Val
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.150A>G
  hgvsp: ENST00000174621.6:c.150A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.243A>G
  variant of: http://identifiers.org/hgnc/12716
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22574
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29314
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4133
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ile76Val
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

17-3495421-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495421
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495421
    reference: chr 17
allele count: 1
allele frequency: 8.482915408367548e-6
allele num: 117884
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.224C>T
  hgvsp: ENSP00000459962.1:p.Thr75Ile
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.241C>T
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.224C>T
  hgvsp: ENSP00000409627.2:p.Thr75Ile
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.224C>T
  hgvsp: ENSP00000461007.1:p.Thr75Ile
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.224C>T
  hgvsp: ENSP00000311692.5:p.Thr75Ile
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.148C>T
  hgvsp: ENSP00000174621.6:p.Pro50Ser
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.224C>T
  hgvsp: ENSP00000382661.3:p.Thr75Ile
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.224C>T
  hgvsp: ENSP00000382659.4:p.Thr75Ile
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.224C>T
  hgvsp: ENSP00000459042.1:p.Thr75Ile
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1508C>T
  variant of: http://identifiers.org/hgnc/1492
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4125
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22522
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29216
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr75Ile
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

17-3495421-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495421
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495421
    reference: chr 17
allele count: 2
allele frequency: 1.69658308167351e-5
allele num: 117884
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.224C>A
  hgvsp: ENSP00000311692.5:p.Thr75Asn
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.224C>A
  hgvsp: ENSP00000409627.2:p.Thr75Asn
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.224C>A
  hgvsp: ENSP00000461007.1:p.Thr75Asn
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.224C>A
  hgvsp: ENSP00000382659.4:p.Thr75Asn
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.224C>A
  hgvsp: ENSP00000382661.3:p.Thr75Asn
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.224C>A
  hgvsp: ENSP00000459042.1:p.Thr75Asn
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.241C>A
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.224C>A
  hgvsp: ENSP00000459962.1:p.Thr75Asn
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.148C>A
  hgvsp: ENSP00000174621.6:p.Pro50Thr
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1508C>A
  variant of: http://identifiers.org/hgnc/1492
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4125
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29216
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22522
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2152
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr75Asn
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP

17-3495423-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495423
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495423
    reference: chr 17
allele count: 7
allele frequency: 5.940157159586565e-5
allele num: 117842
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.222G>A
  hgvsp: ENST00000425167.2:c.222G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.239G>A
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.222G>A
  hgvsp: ENST00000310522.5:c.222G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.222G>A
  hgvsp: ENST00000399756.4:c.222G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1506G>A
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.146G>A
  hgvsp: ENSP00000174621.6:p.Arg49Gln
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.222G>A
  hgvsp: ENST00000576351.1:c.222G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.222G>A
  hgvsp: ENST00000399759.3:c.222G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.222G>A
  hgvsp: ENST00000571088.1:c.222G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.222G>A
  hgvsp: ENST00000572705.1:c.222G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1492
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29088
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4151
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22482
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1435
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg49Gln
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

17-3495424-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495424
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495424
    reference: chr 17
allele count: 4
allele frequency: 3.393338875786831e-5
allele num: 117878
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.221C>T
  hgvsp: ENSP00000382661.3:p.Pro74Leu
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.221C>T
  hgvsp: ENSP00000459042.1:p.Pro74Leu
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.221C>T
  hgvsp: ENSP00000382659.4:p.Pro74Leu
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.221C>T
  hgvsp: ENSP00000409627.2:p.Pro74Leu
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.145C>T
  hgvsp: ENSP00000174621.6:p.Arg49Ter
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.221C>T
  hgvsp: ENSP00000461007.1:p.Pro74Leu
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1505C>T
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.221C>T
  hgvsp: ENSP00000459962.1:p.Pro74Leu
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.238C>T
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.221C>T
  hgvsp: ENSP00000311692.5:p.Pro74Leu
  variant of: http://identifiers.org/hgnc/12716
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29101
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22526
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4133
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg49Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum

17-3495430-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495430
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495430
    reference: chr 17
allele count: 5
allele frequency: 4.246068140901525e-5
allele num: 117756
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.215C>A
  hgvsp: ENSP00000461007.1:p.Ser72Tyr
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.215C>A
  hgvsp: ENSP00000409627.2:p.Ser72Tyr
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.215C>A
  hgvsp: ENSP00000311692.5:p.Ser72Tyr
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.215C>A
  hgvsp: ENSP00000459042.1:p.Ser72Tyr
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.215C>A
  hgvsp: ENSP00000459962.1:p.Ser72Tyr
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.139C>A
  hgvsp: ENSP00000174621.6:p.Pro47Thr
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.232C>A
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.215C>A
  hgvsp: ENSP00000382659.4:p.Ser72Tyr
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.215C>A
  hgvsp: ENSP00000382661.3:p.Ser72Tyr
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1499C>A
  variant of: http://identifiers.org/hgnc/1492
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4064
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22342
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29031
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser72Tyr
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD

17-3495443-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495443
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495443
    reference: chr 17
allele count: 1
allele frequency: 8.572212316554656e-6
allele num: 116656
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.219G>C
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.202G>C
  hgvsp: ENSP00000459042.1:p.Gly68Arg
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.126G>C
  hgvsp: ENSP00000174621.6:p.Lys42Asn
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.202G>C
  hgvsp: ENSP00000382659.4:p.Gly68Arg
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1486G>C
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.202G>C
  hgvsp: ENSP00000459962.1:p.Gly68Arg
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.202G>C
  hgvsp: ENSP00000382661.3:p.Gly68Arg
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.202G>C
  hgvsp: ENSP00000409627.2:p.Gly68Arg
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.202G>C
  hgvsp: ENSP00000461007.1:p.Gly68Arg
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.202G>C
  hgvsp: ENSP00000311692.5:p.Gly68Arg
  variant of: http://identifiers.org/hgnc/12716
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2263
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3976
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21895
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1988
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27881
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly68Arg
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD

17-3495449-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495449
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495449
    reference: chr 17
allele count: 3
allele frequency: 2.587768480979902e-5
allele num: 115930
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.196G>A
  hgvsp: ENSP00000461007.1:p.Glu66Lys
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.196G>A
  hgvsp: ENSP00000382661.3:p.Glu66Lys
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.213G>A
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.196G>A
  hgvsp: ENSP00000459042.1:p.Glu66Lys
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.196G>A
  hgvsp: ENSP00000311692.5:p.Glu66Lys
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.196G>A
  hgvsp: ENSP00000459962.1:p.Glu66Lys
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.120G>A
  hgvsp: ENST00000174621.6:c.120G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.196G>A
  hgvsp: ENSP00000382659.4:p.Glu66Lys
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.196G>A
  hgvsp: ENSP00000409627.2:p.Glu66Lys
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1480G>A
  variant of: http://identifiers.org/hgnc/1492
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27467
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3897
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2639
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21400
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1950
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Glu66Lys
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

17-3495450-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495450
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495450
    reference: chr 17
allele count: 22
allele frequency: 1.899269644491255e-4
allele num: 115834
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.195C>T
  hgvsp: ENST00000571088.1:c.195C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.195C>T
  hgvsp: ENST00000310522.5:c.195C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.119C>T
  hgvsp: ENSP00000174621.6:p.Thr40Met
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.195C>T
  hgvsp: ENST00000399759.3:c.195C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.212C>T
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1479C>T
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.195C>T
  hgvsp: ENST00000576351.1:c.195C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.195C>T
  hgvsp: ENST00000425167.2:c.195C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.195C>T
  hgvsp: ENST00000572705.1:c.195C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.195C>T
  hgvsp: ENST00000399756.4:c.195C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1924
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21324
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 27522
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3831
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2709
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2373
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr40Met
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff

17-3495450-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495450
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495450
    reference: chr 17
allele count: 6
allele frequency: 5.179826303157967e-5
allele num: 115834
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.195C>G
  hgvsp: ENSP00000311692.5:p.His65Gln
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.212C>G
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1479C>G
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.195C>G
  hgvsp: ENSP00000459042.1:p.His65Gln
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.195C>G
  hgvsp: ENSP00000382659.4:p.His65Gln
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.195C>G
  hgvsp: ENSP00000409627.2:p.His65Gln
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.195C>G
  hgvsp: ENSP00000459962.1:p.His65Gln
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.119C>G
  hgvsp: ENSP00000174621.6:p.Thr40Arg
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.195C>G
  hgvsp: ENSP00000382661.3:p.His65Gln
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.195C>G
  hgvsp: ENSP00000461007.1:p.His65Gln
  variant of: http://identifiers.org/hgnc/12716
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21324
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2709
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27522
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2373
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1924
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3831
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42411
  bin: 6.25e1
  variant carriers: 0
hgvs: p.His65Gln
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP

17-3495456-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495456
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495456
    reference: chr 17
allele count: 1
allele frequency: 8.733624454148471e-6
allele num: 114500
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.189C>T
  hgvsp: ENST00000576351.1:c.189C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.113C>T
  hgvsp: ENSP00000174621.6:p.Ala38Val
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.189C>T
  hgvsp: ENST00000399756.4:c.189C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1473C>T
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.189C>T
  hgvsp: ENST00000571088.1:c.189C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.189C>T
  hgvsp: ENST00000572705.1:c.189C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.206C>T
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.189C>T
  hgvsp: ENST00000425167.2:c.189C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.189C>T
  hgvsp: ENST00000310522.5:c.189C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.189C>T
  hgvsp: ENST00000399759.3:c.189C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20576
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2989
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3411
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26577
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3740
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala38Val
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: African
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-3495465-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495465
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495465
    reference: chr 17
allele count: 257
allele frequency: 2.272405743792884e-3
allele num: 113096
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.180G>A
  hgvsp: ENST00000571088.1:c.180G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.180G>A
  hgvsp: ENST00000399756.4:c.180G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.180G>A
  hgvsp: ENST00000425167.2:c.180G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.180G>A
  hgvsp: ENST00000399759.3:c.180G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.104G>A
  hgvsp: ENSP00000174621.6:p.Arg35Gln
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.180G>A
  hgvsp: ENST00000310522.5:c.180G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.180G>A
  hgvsp: ENST00000576351.1:c.180G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.180G>A
  hgvsp: ENST00000572705.1:c.180G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.197G>A
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1464G>A
  variant of: http://identifiers.org/hgnc/1492
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4205
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 3.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 19630
  bin: 2.75e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3525
  bin: 3.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25952
  bin: 2.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3654
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2670
  bin: 1.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg35Gln
num of homozygotes: 1
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: Latino
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-3495466-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495466
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495466
    reference: chr 17
allele count: 5
allele frequency: 4.429639604521776e-5
allele num: 112876
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.179C>T
  hgvsp: ENSP00000382661.3:p.Pro60Leu
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.179C>T
  hgvsp: ENSP00000382659.4:p.Pro60Leu
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.179C>T
  hgvsp: ENSP00000409627.2:p.Pro60Leu
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.179C>T
  hgvsp: ENSP00000311692.5:p.Pro60Leu
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.179C>T
  hgvsp: ENSP00000459042.1:p.Pro60Leu
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.179C>T
  hgvsp: ENSP00000461007.1:p.Pro60Leu
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.179C>T
  hgvsp: ENSP00000459962.1:p.Pro60Leu
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.103C>T
  hgvsp: ENSP00000174621.6:p.Arg35Trp
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.196C>T
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1463C>T
  variant of: http://identifiers.org/hgnc/1492
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25947
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3423
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2666
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19586
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4358
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3759
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6385
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro60Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

17-3495468-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495468
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495468
    reference: chr 17
allele count: 1
allele frequency: 8.887624871129439e-6
allele num: 112516
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.177C>A
  hgvsp: ENSP00000382661.3:p.Phe59Leu
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.177C>A
  hgvsp: ENSP00000311692.5:p.Phe59Leu
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1461C>A
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.177C>A
  hgvsp: ENSP00000459962.1:p.Phe59Leu
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.177C>A
  hgvsp: ENSP00000409627.2:p.Phe59Leu
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.177C>A
  hgvsp: ENSP00000461007.1:p.Phe59Leu
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.177C>A
  hgvsp: ENSP00000459042.1:p.Phe59Leu
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.101C>A
  hgvsp: ENSP00000174621.6:p.Ser34Tyr
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.177C>A
  hgvsp: ENSP00000382659.4:p.Phe59Leu
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.194C>A
  variant of: http://identifiers.org/hgnc/12716
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3979
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4714
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19355
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25637
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2757
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1281
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Phe59Leu
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

17-3495472-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495472
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495472
    reference: chr 17
allele count: 1
allele frequency: 8.982950360216309e-6
allele num: 111322
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.173C>T
  hgvsp: ENSP00000311692.5:p.Ala58Val
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.173C>T
  hgvsp: ENSP00000382659.4:p.Ala58Val
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.97C>T
  hgvsp: ENSP00000174621.6:p.Leu33Phe
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.173C>T
  hgvsp: ENSP00000459962.1:p.Ala58Val
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.173C>T
  hgvsp: ENSP00000409627.2:p.Ala58Val
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.173C>T
  hgvsp: ENSP00000459042.1:p.Ala58Val
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.173C>T
  hgvsp: ENSP00000461007.1:p.Ala58Val
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1457C>T
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.190C>T
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.173C>T
  hgvsp: ENSP00000382661.3:p.Ala58Val
  variant of: http://identifiers.org/hgnc/12716
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18612
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5515
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4561
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3298
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24541
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7909
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala58Val
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD

17-3495478-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495478
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495478
    reference: chr 17
allele count: 1
allele frequency: 9.085953116481918e-6
allele num: 110060
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.167A>T
  hgvsp: ENSP00000409627.2:p.Glu56Val
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.167A>T
  hgvsp: ENSP00000459042.1:p.Glu56Val
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.167A>T
  hgvsp: ENSP00000382659.4:p.Glu56Val
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.167A>T
  hgvsp: ENSP00000459962.1:p.Glu56Val
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.91A>T
  hgvsp: ENSP00000174621.6:p.Arg31Trp
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.167A>T
  hgvsp: ENSP00000461007.1:p.Glu56Val
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.167A>T
  hgvsp: ENSP00000311692.5:p.Glu56Val
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.167A>T
  hgvsp: ENSP00000382661.3:p.Glu56Val
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.184A>T
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1451A>T
  variant of: http://identifiers.org/hgnc/1492
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5177
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6206
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3581
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24135
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3001
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17638
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4775
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Glu56Val
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

17-3495478-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495478
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495478
    reference: chr 17
allele count: 3
allele frequency: 2.725785934944576e-5
allele num: 110060
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1451A>C
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.167A>C
  hgvsp: ENSP00000459042.1:p.Glu56Ala
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.167A>C
  hgvsp: ENSP00000311692.5:p.Glu56Ala
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.167A>C
  hgvsp: ENSP00000382661.3:p.Glu56Ala
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.167A>C
  hgvsp: ENSP00000409627.2:p.Glu56Ala
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.167A>C
  hgvsp: ENSP00000461007.1:p.Glu56Ala
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.167A>C
  hgvsp: ENSP00000459962.1:p.Glu56Ala
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.184A>C
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.167A>C
  hgvsp: ENSP00000382659.4:p.Glu56Ala
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.91A>C
  hgvsp: ENST00000174621.6:c.91A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24135
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3001
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17638
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6206
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3581
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5177
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1136
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Glu56Ala
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum

17-3495480-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495480
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495480
    reference: chr 17
allele count: 2
allele frequency: 1.824717624947539e-5
allele num: 109606
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.165G>A
  hgvsp: ENST00000310522.5:c.165G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1449G>A
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.165G>A
  hgvsp: ENST00000576351.1:c.165G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.165G>A
  hgvsp: ENST00000399759.3:c.165G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.165G>A
  hgvsp: ENST00000572705.1:c.165G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.182G>A
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.165G>A
  hgvsp: ENST00000571088.1:c.165G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.165G>A
  hgvsp: ENST00000399756.4:c.165G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.89G>A
  hgvsp: ENSP00000174621.6:p.Arg30Gln
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.165G>A
  hgvsp: ENST00000425167.2:c.165G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5324
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6355
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3579
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2963
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24152
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17355
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg30Gln
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum

17-3495481-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495481
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495481
    reference: chr 17
allele count: 6
allele frequency: 5.487269534679543e-5
allele num: 109344
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.164C>T
  hgvsp: ENSP00000382659.4:p.Ser55Leu
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1448C>T
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.181C>T
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.88C>T
  hgvsp: ENSP00000174621.6:p.Arg30Trp
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.164C>T
  hgvsp: ENSP00000461007.1:p.Ser55Leu
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.164C>T
  hgvsp: ENSP00000459962.1:p.Ser55Leu
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.164C>T
  hgvsp: ENSP00000409627.2:p.Ser55Leu
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.164C>T
  hgvsp: ENSP00000459042.1:p.Ser55Leu
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.164C>T
  hgvsp: ENSP00000311692.5:p.Ser55Leu
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.164C>T
  hgvsp: ENSP00000382661.3:p.Ser55Leu
  variant of: http://identifiers.org/hgnc/12716
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6466
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17179
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5456
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3580
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24159
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1849
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser55Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum

17-3495487-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495487
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495487
    reference: chr 17
allele count: 1
allele frequency: 9.257202103236319e-6
allele num: 108024
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.158G>A
  hgvsp: ENSP00000459042.1:p.Gly53Asp
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.82G>A
  hgvsp: ENSP00000174621.6:p.Val28Met
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.175G>A
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.158G>A
  hgvsp: ENSP00000382659.4:p.Gly53Asp
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.158G>A
  hgvsp: ENSP00000461007.1:p.Gly53Asp
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.158G>A
  hgvsp: ENSP00000409627.2:p.Gly53Asp
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.158G>A
  hgvsp: ENSP00000382661.3:p.Gly53Asp
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.158G>A
  hgvsp: ENSP00000459962.1:p.Gly53Asp
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1442G>A
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.158G>A
  hgvsp: ENSP00000311692.5:p.Gly53Asp
  variant of: http://identifiers.org/hgnc/12716
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23746
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16468
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2719
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3561
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7119
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1974
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly53Asp
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

17-3495492-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495492
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495492
    reference: chr 17
allele count: 1
allele frequency: 9.453225440520306e-6
allele num: 105784
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.153G>A
  hgvsp: ENST00000399756.4:c.153G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.153G>A
  hgvsp: ENST00000572705.1:c.153G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.153G>A
  hgvsp: ENST00000310522.5:c.153G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.153G>A
  hgvsp: ENST00000571088.1:c.153G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.77G>A
  hgvsp: ENSP00000174621.6:p.Gly26Glu
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.170G>A
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.153G>A
  hgvsp: ENST00000576351.1:c.153G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.153G>A
  hgvsp: ENST00000425167.2:c.153G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.153G>A
  hgvsp: ENST00000399759.3:c.153G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1437G>A
  variant of: http://identifiers.org/hgnc/1492
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21965
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3929
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8149
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2612
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15889
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7157
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly26Glu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

17-3495498-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495498
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495498
    reference: chr 17
allele count: 1
allele frequency: 9.60208941465663e-6
allele num: 104144
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.147C>T
  hgvsp: ENST00000425167.2:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.147C>T
  hgvsp: ENST00000399759.3:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.71C>T
  hgvsp: ENSP00000174621.6:p.Ser24Phe
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1431C>T
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.147C>T
  hgvsp: ENST00000571088.1:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.164C>T
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.147C>T
  hgvsp: ENST00000572705.1:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.147C>T
  hgvsp: ENST00000576351.1:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.147C>T
  hgvsp: ENST00000399756.4:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.147C>T
  hgvsp: ENST00000310522.5:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15198
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8981
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7992
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2519
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21002
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3985
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser24Phe
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-3495501-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495501
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495501
    reference: chr 17
allele count: 1
allele frequency: 9.761621210050565e-6
allele num: 102442
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.144G>C
  hgvsp: ENST00000399759.3:c.144G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1428G>C
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.144G>C
  hgvsp: ENST00000310522.5:c.144G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.144G>C
  hgvsp: ENST00000425167.2:c.144G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.161G>C
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.144G>C
  hgvsp: ENST00000571088.1:c.144G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.144G>C
  hgvsp: ENST00000399756.4:c.144G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.144G>C
  hgvsp: ENST00000572705.1:c.144G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.68G>C
  hgvsp: ENSP00000174621.6:p.Gly23Ala
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.144G>C
  hgvsp: ENST00000576351.1:c.144G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9582
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4320
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8630
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20276
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2447
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14384
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 986
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly23Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP

17-3495502-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495502
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495502
    reference: chr 17
allele count: 4
allele frequency: 3.907089413741233e-5
allele num: 102378
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.143G>A
  hgvsp: ENSP00000311692.5:p.Arg48Gln
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.143G>A
  hgvsp: ENSP00000459962.1:p.Arg48Gln
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.143G>A
  hgvsp: ENSP00000382661.3:p.Arg48Gln
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.143G>A
  hgvsp: ENSP00000461007.1:p.Arg48Gln
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.143G>A
  hgvsp: ENSP00000459042.1:p.Arg48Gln
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1427G>A
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.160G>A
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.67G>A
  hgvsp: ENSP00000174621.6:p.Gly23Ser
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.143G>A
  hgvsp: ENSP00000382659.4:p.Arg48Gln
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.143G>A
  hgvsp: ENSP00000409627.2:p.Arg48Gln
  variant of: http://identifiers.org/hgnc/12716
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14376
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8700
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20382
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9598
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14385
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg48Gln
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: C
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

17-3495503-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495503
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495503
    reference: chr 17
allele count: 8
allele frequency: 7.846214201647705e-5
allele num: 101960
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.159C>T
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.142C>T
  hgvsp: ENSP00000311692.5:p.Arg48Trp
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.142C>T
  hgvsp: ENSP00000461007.1:p.Arg48Trp
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.142C>T
  hgvsp: ENSP00000459042.1:p.Arg48Trp
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.142C>T
  hgvsp: ENSP00000409627.2:p.Arg48Trp
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.142C>T
  hgvsp: ENSP00000382661.3:p.Arg48Trp
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.142C>T
  hgvsp: ENSP00000459962.1:p.Arg48Trp
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.142C>T
  hgvsp: ENSP00000382659.4:p.Arg48Trp
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.66C>T
  hgvsp: ENST00000174621.6:c.66C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1426C>T
  variant of: http://identifiers.org/hgnc/1492
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8867
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9740
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20265
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4126
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2390
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14258
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 9.75e1
  variant carriers: 8
hgvs: p.Arg48Trp
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP

17-3495507-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495507
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495507
    reference: chr 17
allele count: 1
allele frequency: 1.001201441730076e-5
allele num: 99880
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.138C>T
  hgvsp: ENST00000310522.5:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.138C>T
  hgvsp: ENST00000399756.4:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.138C>T
  hgvsp: ENST00000399759.3:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.138C>T
  hgvsp: ENST00000576351.1:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.138C>T
  hgvsp: ENST00000425167.2:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1422C>T
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.62C>T
  hgvsp: ENSP00000174621.6:p.Ala21Val
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.155C>T
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.138C>T
  hgvsp: ENST00000572705.1:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.138C>T
  hgvsp: ENST00000571088.1:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2219
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9937
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10881
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4550
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13215
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18791
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2825
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala21Val
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

17-3495508-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495508
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495508
    reference: chr 17
allele count: 2
allele frequency: 2.012841931523118e-5
allele num: 99362
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.61G>A
  hgvsp: ENSP00000174621.6:p.Ala21Thr
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.137G>A
  hgvsp: ENSP00000461007.1:p.Arg46His
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.137G>A
  hgvsp: ENSP00000459042.1:p.Arg46His
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.154G>A
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.137G>A
  hgvsp: ENSP00000382661.3:p.Arg46His
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.137G>A
  hgvsp: ENSP00000459962.1:p.Arg46His
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.137G>A
  hgvsp: ENSP00000311692.5:p.Arg46His
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1421G>A
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.137G>A
  hgvsp: ENSP00000382659.4:p.Arg46His
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.137G>A
  hgvsp: ENSP00000409627.2:p.Arg46His
  variant of: http://identifiers.org/hgnc/12716
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4522
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9957
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18801
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10857
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13196
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg46His
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

17-3495509-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495509
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495509
    reference: chr 17
allele count: 2
allele frequency: 2.010939510939511e-5
allele num: 99456
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.136C>T
  hgvsp: ENSP00000382659.4:p.Arg46Cys
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.136C>T
  hgvsp: ENSP00000459962.1:p.Arg46Cys
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.136C>T
  hgvsp: ENSP00000311692.5:p.Arg46Cys
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.136C>T
  hgvsp: ENSP00000461007.1:p.Arg46Cys
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.60C>T
  hgvsp: ENST00000174621.6:c.60C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.153C>T
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.136C>T
  hgvsp: ENSP00000382661.3:p.Arg46Cys
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1420C>T
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.136C>T
  hgvsp: ENSP00000459042.1:p.Arg46Cys
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.136C>T
  hgvsp: ENSP00000409627.2:p.Arg46Cys
  variant of: http://identifiers.org/hgnc/12716
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10077
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13230
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4318
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18903
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10915
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg46Cys
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

http://identifiers.org/exac.variant/17-3495511-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495511
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495511
    reference: chr 17
allele count: 1
allele frequency: 1.015640869388584e-5
allele num: 98460
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.151G>T
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.134G>T
  hgvsp: ENSP00000382661.3:p.Ser45Ile
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.134G>T
  hgvsp: ENSP00000382659.4:p.Ser45Ile
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.134G>T
  hgvsp: ENSP00000461007.1:p.Ser45Ile
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.134G>T
  hgvsp: ENSP00000409627.2:p.Ser45Ile
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.134G>T
  hgvsp: ENSP00000459042.1:p.Ser45Ile
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.134G>T
  hgvsp: ENSP00000459962.1:p.Ser45Ile
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.134G>T
  hgvsp: ENSP00000311692.5:p.Ser45Ile
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.58G>T
  hgvsp: ENSP00000174621.6:p.Ala20Ser
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1418G>T
  variant of: http://identifiers.org/hgnc/1492
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4425
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18512
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12649
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11325
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10591
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser45Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-3495511-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495511
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495511
    reference: chr 17
allele count: 1
allele frequency: 1.015640869388584e-5
allele num: 98460
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.134G>A
  hgvsp: ENSP00000409627.2:p.Ser45Asn
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1418G>A
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.134G>A
  hgvsp: ENSP00000459042.1:p.Ser45Asn
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.134G>A
  hgvsp: ENSP00000311692.5:p.Ser45Asn
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.134G>A
  hgvsp: ENSP00000459962.1:p.Ser45Asn
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.134G>A
  hgvsp: ENSP00000382659.4:p.Ser45Asn
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.58G>A
  hgvsp: ENSP00000174621.6:p.Ala20Thr
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.134G>A
  hgvsp: ENSP00000461007.1:p.Ser45Asn
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.134G>A
  hgvsp: ENSP00000382661.3:p.Ser45Asn
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.151G>A
  variant of: http://identifiers.org/hgnc/12716
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12649
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11325
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18512
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10591
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4425
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser45Asn
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum

17-3495520-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495520
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495520
    reference: chr 17
allele count: 3
allele frequency: 3.201775918376059e-5
allele num: 93698
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1409C>T
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.125C>T
  hgvsp: ENSP00000382661.3:p.Thr42Met
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.125C>T
  hgvsp: ENSP00000311692.5:p.Thr42Met
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.125C>T
  hgvsp: ENSP00000409627.2:p.Thr42Met
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.125C>T
  hgvsp: ENSP00000459962.1:p.Thr42Met
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.49C>T
  hgvsp: ENSP00000174621.6:p.Arg17Trp
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.125C>T
  hgvsp: ENSP00000461007.1:p.Thr42Met
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.125C>T
  hgvsp: ENSP00000459042.1:p.Thr42Met
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.142C>T
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.125C>T
  hgvsp: ENSP00000382659.4:p.Thr42Met
  variant of: http://identifiers.org/hgnc/12716
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16782
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5001
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12634
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12896
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10382
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2000
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr42Met
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

17-3495521-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495521
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495521
    reference: chr 17
allele count: 1
allele frequency: 1.067942501975694e-5
allele num: 93638
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.48A>G
  hgvsp: ENST00000174621.6:c.48A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1408A>G
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.124A>G
  hgvsp: ENSP00000461007.1:p.Thr42Ala
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.124A>G
  hgvsp: ENSP00000311692.5:p.Thr42Ala
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.124A>G
  hgvsp: ENSP00000459962.1:p.Thr42Ala
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.124A>G
  hgvsp: ENSP00000382661.3:p.Thr42Ala
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.124A>G
  hgvsp: ENSP00000459042.1:p.Thr42Ala
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.124A>G
  hgvsp: ENSP00000409627.2:p.Thr42Ala
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.141A>G
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.124A>G
  hgvsp: ENSP00000382659.4:p.Thr42Ala
  variant of: http://identifiers.org/hgnc/12716
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12862
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10202
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13072
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16709
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4910
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1128
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr42Ala
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: T
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum

17-3495529-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495529
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495529
    reference: chr 17
allele count: 3
allele frequency: 3.314184710561202e-5
allele num: 90520
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.116A>T
  hgvsp: ENSP00000382659.4:p.Gln39Leu
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.133A>T
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.116A>T
  hgvsp: ENSP00000461007.1:p.Gln39Leu
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.116A>T
  hgvsp: ENSP00000409627.2:p.Gln39Leu
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.116A>T
  hgvsp: ENSP00000459042.1:p.Gln39Leu
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.116A>T
  hgvsp: ENSP00000311692.5:p.Gln39Leu
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.116A>T
  hgvsp: ENSP00000382661.3:p.Gln39Leu
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.40A>T
  hgvsp: ENSP00000174621.6:p.Ser14Cys
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.116A>T
  hgvsp: ENSP00000459962.1:p.Gln39Leu
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1400A>T
  variant of: http://identifiers.org/hgnc/1492
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15804
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14228
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5061
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13924
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8800
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gln39Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

17-3495529-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495529
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495529
    reference: chr 17
allele count: 10
allele frequency: 1.104728236853734e-4
allele num: 90520
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.116A>G
  hgvsp: ENSP00000459962.1:p.Gln39Arg
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.116A>G
  hgvsp: ENSP00000461007.1:p.Gln39Arg
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.133A>G
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.116A>G
  hgvsp: ENSP00000459042.1:p.Gln39Arg
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.116A>G
  hgvsp: ENSP00000311692.5:p.Gln39Arg
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1400A>G
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.116A>G
  hgvsp: ENSP00000409627.2:p.Gln39Arg
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.116A>G
  hgvsp: ENSP00000382659.4:p.Gln39Arg
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.40A>G
  hgvsp: ENSP00000174621.6:p.Ser14Gly
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.116A>G
  hgvsp: ENSP00000382661.3:p.Gln39Arg
  variant of: http://identifiers.org/hgnc/12716
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14228
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13924
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8800
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15804
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5061
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2514
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gln39Arg
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD

17-3495533-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495533
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495533
    reference: chr 17
allele count: 1
allele frequency: 1.127014538487546e-5
allele num: 88730
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.112C>T
  hgvsp: ENSP00000311692.5:p.Pro38Ser
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1396C>T
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.112C>T
  hgvsp: ENSP00000382659.4:p.Pro38Ser
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.112C>T
  hgvsp: ENSP00000459962.1:p.Pro38Ser
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.112C>T
  hgvsp: ENSP00000461007.1:p.Pro38Ser
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.112C>T
  hgvsp: ENSP00000409627.2:p.Pro38Ser
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.112C>T
  hgvsp: ENSP00000382661.3:p.Pro38Ser
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.112C>T
  hgvsp: ENSP00000459042.1:p.Pro38Ser
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.129C>T
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.36C>T
  hgvsp: ENST00000174621.6:c.36C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14263
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15174
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14986
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5120
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8282
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro38Ser
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum

17-3495533-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495533
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495533
    reference: chr 17
allele count: 27
allele frequency: 3.042939253916375e-4
allele num: 88730
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.112C>A
  hgvsp: ENSP00000382661.3:p.Pro38Thr
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1396C>A
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.112C>A
  hgvsp: ENSP00000382659.4:p.Pro38Thr
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.129C>A
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.36C>A
  hgvsp: ENSP00000174621.6:p.Ser12Arg
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.112C>A
  hgvsp: ENSP00000459042.1:p.Pro38Thr
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.112C>A
  hgvsp: ENSP00000461007.1:p.Pro38Thr
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.112C>A
  hgvsp: ENSP00000409627.2:p.Pro38Thr
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.112C>A
  hgvsp: ENSP00000459962.1:p.Pro38Thr
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.112C>A
  hgvsp: ENSP00000311692.5:p.Pro38Thr
  variant of: http://identifiers.org/hgnc/12716
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8282
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5120
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 14263
  bin: 1.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 15174
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14986
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro38Thr
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

17-3495537-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495537
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495537
    reference: chr 17
allele count: 2
allele frequency: 2.319701222482544e-5
allele num: 86218
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1392C>G
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.108C>G
  hgvsp: ENST00000571088.1:c.108C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.108C>G
  hgvsp: ENST00000399759.3:c.108C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.108C>G
  hgvsp: ENST00000572705.1:c.108C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.108C>G
  hgvsp: ENST00000576351.1:c.108C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.125C>G
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.32C>G
  hgvsp: ENSP00000174621.6:p.Pro11Arg
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.108C>G
  hgvsp: ENST00000310522.5:c.108C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.108C>G
  hgvsp: ENST00000399756.4:c.108C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.108C>G
  hgvsp: ENST00000425167.2:c.108C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5373
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16006
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14730
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7316
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14355
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3592
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro11Arg
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

17-3495541-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495541
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495541
    reference: chr 17
allele count: 1
allele frequency: 1.17236043049075e-5
allele num: 85298
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.104C>T
  hgvsp: ENSP00000459962.1:p.Pro35Leu
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.104C>T
  hgvsp: ENSP00000382659.4:p.Pro35Leu
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.104C>T
  hgvsp: ENSP00000311692.5:p.Pro35Leu
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.104C>T
  hgvsp: ENSP00000459042.1:p.Pro35Leu
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1388C>T
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.28C>T
  hgvsp: ENSP00000174621.6:p.Gln10Ter
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.104C>T
  hgvsp: ENSP00000409627.2:p.Pro35Leu
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.121C>T
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.104C>T
  hgvsp: ENSP00000461007.1:p.Pro35Leu
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.104C>T
  hgvsp: ENSP00000382661.3:p.Pro35Leu
  variant of: http://identifiers.org/hgnc/12716
canonical: false
consequence: stop gained
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14711
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5048
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16442
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14524
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7088
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3447
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gln10Ter
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: African
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum

http://identifiers.org/exac.variant/17-3495543-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495543
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495543
    reference: chr 17
allele count: 1
allele frequency: 1.184609552691433e-5
allele num: 84416
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.102T>G
  hgvsp: ENST00000571088.1:c.102T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.102T>G
  hgvsp: ENST00000399759.3:c.102T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.102T>G
  hgvsp: ENST00000576351.1:c.102T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.26T>G
  hgvsp: ENSP00000174621.6:p.Leu9Arg
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.119T>G
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.102T>G
  hgvsp: ENST00000572705.1:c.102T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.102T>G
  hgvsp: ENST00000310522.5:c.102T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1386T>G
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.102T>G
  hgvsp: ENST00000425167.2:c.102T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.102T>G
  hgvsp: ENST00000399756.4:c.102T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14267
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14923
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6831
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16826
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4953
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2002
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu9Arg
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

17-3495543-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495543
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495543
    reference: chr 17
allele count: 1
allele frequency: 1.184609552691433e-5
allele num: 84416
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1386T>A
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.102T>A
  hgvsp: ENST00000399759.3:c.102T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.102T>A
  hgvsp: ENST00000572705.1:c.102T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.26T>A
  hgvsp: ENSP00000174621.6:p.Leu9His
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.119T>A
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.102T>A
  hgvsp: ENST00000399756.4:c.102T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.102T>A
  hgvsp: ENST00000571088.1:c.102T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.102T>A
  hgvsp: ENST00000310522.5:c.102T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.102T>A
  hgvsp: ENST00000425167.2:c.102T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.102T>A
  hgvsp: ENST00000576351.1:c.102T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14267
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16826
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14923
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6831
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4953
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 834
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu9His
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

17-3495545-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495545
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495545
    reference: chr 17
allele count: 2
allele frequency: 2.4059282071023e-5
allele num: 83128
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.100C>T
  hgvsp: ENSP00000459962.1:p.Pro34Ser
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.100C>T
  hgvsp: ENSP00000382661.3:p.Pro34Ser
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.100C>T
  hgvsp: ENSP00000311692.5:p.Pro34Ser
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.100C>T
  hgvsp: ENSP00000409627.2:p.Pro34Ser
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.100C>T
  hgvsp: ENSP00000382659.4:p.Pro34Ser
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.100C>T
  hgvsp: ENSP00000461007.1:p.Pro34Ser
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.117C>T
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.100C>T
  hgvsp: ENSP00000459042.1:p.Pro34Ser
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.24C>T
  hgvsp: ENST00000174621.6:c.24C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1384C>T
  variant of: http://identifiers.org/hgnc/1492
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13587
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5092
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6454
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15195
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17424
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro34Ser
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

17-3495552-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3495552
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 3495552
    reference: chr 17
allele count: 1
allele frequency: 1.243626414625047e-5
allele num: 80410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382661
  ensembl transcript: ENST00000399759
  gene symbol: TRPV1
  hgvsc: ENST00000399759.3:c.93C>T
  hgvsp: ENST00000399759.3:c.93C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000461007
  ensembl transcript: ENST00000571088
  gene symbol: TRPV1
  hgvsc: ENST00000571088.1:c.93C>T
  hgvsp: ENST00000571088.1:c.93C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000409627
  ensembl transcript: ENST00000425167
  gene symbol: TRPV1
  hgvsc: ENST00000425167.2:c.93C>T
  hgvsp: ENST00000425167.2:c.93C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000459962
  ensembl transcript: ENST00000572705
  gene symbol: SHPK
  hgvsc: ENST00000572705.1:c.93C>T
  hgvsp: ENST00000572705.1:c.93C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1492
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000311692
  ensembl transcript: ENST00000310522
  gene symbol: TRPV1
  hgvsc: ENST00000310522.5:c.93C>T
  hgvsp: ENST00000310522.5:c.93C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000174621
  ensembl transcript: ENST00000174621
  gene symbol: TRPV1
  hgvsc: ENST00000174621.6:c.17C>T
  hgvsp: ENSP00000174621.6:p.Pro6Leu
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000382659
  ensembl transcript: ENST00000399756
  gene symbol: TRPV1
  hgvsc: ENST00000399756.4:c.93C>T
  hgvsp: ENST00000399756.4:c.93C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196689
  ensembl protein: ENSP00000459042
  ensembl transcript: ENST00000576351
  gene symbol: TRPV1
  hgvsc: ENST00000576351.1:c.93C>T
  hgvsp: ENST00000576351.1:c.93C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196689
  ensembl transcript: ENST00000574085
  gene symbol: TRPV1
  hgvsc: ENST00000574085.1:n.110C>T
  variant of: http://identifiers.org/hgnc/12716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000262304
  ensembl protein: ENSP00000461416
  ensembl transcript: ENST00000572919
  gene symbol: SHPK
  hgvsc: ENST00000572919.1:c.*1377C>T
  variant of: http://identifiers.org/hgnc/1492
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18592
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4536
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6079
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15243
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13226
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro6Leu
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 33089
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 748
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 900
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 894
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 800
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5334
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1684
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1943
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1950
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 787
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1589
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5611
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5784
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8264
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.633293045438213e-5
allele num: 61226
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8310
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13478
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11012
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.92e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.58e-1

FS
type: SiteQuality
SIO_000300: 4.316e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.31e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.37e-1

QD
type: SiteQuality
SIO_000300: 1.285e1

DP
type: SiteQuality
SIO_000300: 1.293863e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

GenotypeQuality
all individuals: 2521
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 751
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1911
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33599
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1710
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5648
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5375
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1608
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 919
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 898
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 409
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 710
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5784
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8288
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8332
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11040
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.630682930011089e-5
allele num: 61324
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.34e-1

QD
type: SiteQuality
SIO_000300: 1.931e1

DP
type: SiteQuality
SIO_000300: 1.296489e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.762e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.107e0

VQSLOD
type: SiteQuality
SIO_000300: -1.024e0

GenotypeQuality
all individuals: 715
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 547
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 658
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5529
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33929
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 680
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5419
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 671
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1706
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2351
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 928
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 902
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1621
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13702
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11054
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8332
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61386
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.20598166907863e-4
allele num: 8292
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.3e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.323e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

DP
type: SiteQuality
SIO_000300: 1.306337e6

VQSLOD
type: SiteQuality
SIO_000300: 7.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

FS
type: SiteQuality
SIO_000300: 3.876e0

GenotypeQuality
all individuals: 5527
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 554
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1612
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1737
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 621
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2091
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1440
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1643
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35447
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5818
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8318
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8352
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13982
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11068
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.622902398649745e-5
allele num: 61618
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.76e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.428e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.76e-1

QD
type: SiteQuality
SIO_000300: 9.890000000000001e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.25e-1

DP
type: SiteQuality
SIO_000300: 1.32026e6

GenotypeQuality
all individuals: 518
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1088
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37009
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 467
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GenotypeQuality
all individuals: 5681
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GenotypeQuality
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GenotypeQuality
all individuals: 952
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variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 2.5e0
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GenotypeQuality
all individuals: 1359
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variant carriers: 0

GenotypeQuality
all individuals: 4898
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variant carriers: 0

GenotypeQuality
all individuals: 213
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variant carriers: 0

GenotypeQuality
all individuals: 415
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GenotypeQuality
all individuals: 439
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GenotypeQuality
all individuals: 1674
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variant carriers: 0

GenotypeQuality
all individuals: 365
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variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5862
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11118
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.453070048075372e-5
allele num: 61986
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.390047261606895e-4
allele num: 14388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.600000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 6.26e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.4703e1

VQSLOD
type: SiteQuality
SIO_000300: -1.223e0

QD
type: SiteQuality
SIO_000300: 9.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.44e-1

DP
type: SiteQuality
SIO_000300: 1.345427e6

GenotypeQuality
all individuals: 377
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 919
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4793
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 963
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GenotypeQuality
all individuals: 125
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 434
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variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11142
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5872
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.838074398249453e-5
allele num: 14624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8436
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8408
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.607251920666045e-5
allele num: 62218
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.36e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.34e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.95e-1

FS
type: SiteQuality
SIO_000300: 3.854e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.78e-1

DP
type: SiteQuality
SIO_000300: 1.353698e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

QD
type: SiteQuality
SIO_000300: 1.094e1

GenotypeQuality
all individuals: 931
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 366
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38169
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 83
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variant carriers: 0

GenotypeQuality
all individuals: 4616
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variant carriers: 1

GenotypeQuality
all individuals: 450
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 368
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variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 237
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.794401413235494e-5
allele num: 14718
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.481089801039613e-4
allele num: 11158
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.817265078039694e-5
allele num: 62276
num of homozygotes: 0

African
type: Population
allele count: 144
allele frequency: 1.69771280358406e-2
allele num: 8482
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8412
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5894
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.43e0

QD
type: SiteQuality
SIO_000300: 1.104e1

FS
type: SiteQuality
SIO_000300: 3.784e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.34e-1

DP
type: SiteQuality
SIO_000300: 1.361433e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.24e-1

GenotypeQuality
all individuals: 124
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
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variant carriers: 0

GenotypeQuality
all individuals: 387
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GenotypeQuality
all individuals: 75
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GenotypeQuality
all individuals: 5847
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variant carriers: 0

GenotypeQuality
all individuals: 370
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variant carriers: 0

GenotypeQuality
all individuals: 981
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variant carriers: 1

GenotypeQuality
all individuals: 4472
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GenotypeQuality
all individuals: 1806
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variant carriers: 0

GenotypeQuality
all individuals: 431
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GenotypeQuality
all individuals: 38391
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variant carriers: 0

GenotypeQuality
all individuals: 1713
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variant carriers: 0

GenotypeQuality
all individuals: 414
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GenotypeQuality
all individuals: 1135
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variant carriers: 0

GenotypeQuality
all individuals: 409
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variant carriers: 0

GenotypeQuality
all individuals: 435
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variant carriers: 0

GenotypeQuality
all individuals: 1293
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variant carriers: 0

GenotypeQuality
all individuals: 861
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variant carriers: 0

GenotypeQuality
all individuals: 917
bin: 9.75e1
variant carriers: 3

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8420
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.600819619645258e-5
allele num: 62468
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.946144211844694e-5
allele num: 11178
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.346866932644919e-4
allele num: 8522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14916
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5898
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.908e-1

QD
type: SiteQuality
SIO_000300: 7.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.64e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.56e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.366977e6

GenotypeQuality
all individuals: 57
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1749
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variant carriers: 0

GenotypeQuality
all individuals: 5993
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variant carriers: 0

GenotypeQuality
all individuals: 3971
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variant carriers: 0

GenotypeQuality
all individuals: 340
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GenotypeQuality
all individuals: 314
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GenotypeQuality
all individuals: 615
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GenotypeQuality
all individuals: 376
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GenotypeQuality
all individuals: 296
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GenotypeQuality
all individuals: 257
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GenotypeQuality
all individuals: 213
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GenotypeQuality
all individuals: 21
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GenotypeQuality
all individuals: 1849
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variant carriers: 0

GenotypeQuality
all individuals: 1016
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GenotypeQuality
all individuals: 997
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GenotypeQuality
all individuals: 437
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GenotypeQuality
all individuals: 935
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variant carriers: 15

GenotypeQuality
all individuals: 84
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GenotypeQuality
all individuals: 40017
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5968
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8432
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.111993645750596e-4
allele num: 62950
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 6.239971474416117e-4
allele num: 11218
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.222493887530562e-3
allele num: 818
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15392
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.24e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

QD
type: SiteQuality
SIO_000300: 1.178e1

MQRankSum
type: SiteQuality
SIO_000300: -2.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.51e0

FS
type: SiteQuality
SIO_000300: 5.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e-1

DP
type: SiteQuality
SIO_000300: 1.385116e6

GenotypeDepth
all individuals: 2
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1763
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 934
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variant carriers: 0

GenotypeQuality
all individuals: 264
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GenotypeQuality
all individuals: 999
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GenotypeQuality
all individuals: 1076
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variant carriers: 160

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 398
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GenotypeQuality
all individuals: 3614
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 71
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GenotypeQuality
all individuals: 39588
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variant carriers: 0

GenotypeQuality
all individuals: 858
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variant carriers: 0

GenotypeQuality
all individuals: 1870
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GenotypeQuality
all individuals: 147
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variant carriers: 0

GenotypeQuality
all individuals: 35
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GenotypeQuality
all individuals: 440
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GenotypeQuality
all individuals: 632
bin: 5.25e1
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GenotypeQuality
all individuals: 451
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 298
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6062
bin: 6.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6004
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63138
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.779676098949991e-4
allele num: 11238
num of homozygotes: 0

South Asian
type: Population
allele count: 162
allele frequency: 1.038994356080041e-2
allele num: 15592
num of homozygotes: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8442
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.21654501216545e-3
allele num: 822
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8666
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.599999999999999e-2

DP
type: SiteQuality
SIO_000300: 1.396767e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.93e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.92e0

QD
type: SiteQuality
SIO_000300: 1.214e1

FS
type: SiteQuality
SIO_000300: 2.333e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.11e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.84e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 378
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1878
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GenotypeQuality
all individuals: 580
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GenotypeQuality
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GenotypeQuality
all individuals: 25
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 842
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GenotypeQuality
all individuals: 423
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GenotypeQuality
all individuals: 307
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GenotypeQuality
all individuals: 249
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GenotypeQuality
all individuals: 925
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GenotypeQuality
all individuals: 3566
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GenotypeQuality
all individuals: 39962
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GenotypeQuality
all individuals: 1009
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variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63232
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11240
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8450
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.385696040868455e-5
allele num: 15660
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8704
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6022
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

FS
type: SiteQuality
SIO_000300: 1.2465e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.59e-1

DP
type: SiteQuality
SIO_000300: 1.399034e6

BaseQRankSum
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SIO_000300: -1.678e0

QD
type: SiteQuality
SIO_000300: 2.098e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.681e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 852
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GenotypeQuality
all individuals: 928
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GenotypeQuality
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GenotypeQuality
all individuals: 390
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GenotypeQuality
all individuals: 562
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GenotypeQuality
all individuals: 135
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GenotypeQuality
all individuals: 6143
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GenotypeQuality
all individuals: 449
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GenotypeQuality
all individuals: 794
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GenotypeQuality
all individuals: 382
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GenotypeQuality
all individuals: 45
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GenotypeQuality
all individuals: 242
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GenotypeQuality
all individuals: 297
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variant carriers: 0

GenotypeQuality
all individuals: 648
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1887
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40013
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1793
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8758
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8452
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11260
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.733503739467954e-5
allele num: 63378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6062
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15818
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.408577e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.67e0

MQRankSum
type: SiteQuality
SIO_000300: 3.94e-1

FS
type: SiteQuality
SIO_000300: 1.259e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.55e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.91e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.217e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.43e-1

GenotypeQuality
all individuals: 417
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 506
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1038
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 784
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1902
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40721
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3210
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 734
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6201
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 474
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 940
bin: 9.75e1
variant carriers: 9

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11266
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.181474480151229e-4
allele num: 8464
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.534119247336205e-4
allele num: 8822
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.276675872457946e-5
allele num: 15932
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6088
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.145544336447422e-5
allele num: 63582
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.196172248803828e-3
allele num: 836
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.83e0

QD
type: SiteQuality
SIO_000300: 1.341e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.14e0

MQ
type: SiteQuality
SIO_000300: 5.944e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.2e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.0e-1

DP
type: SiteQuality
SIO_000300: 1.414057e6

GenotypeQuality
all individuals: 59
bin: 1.25e1
variant carriers: 8

GenotypeQuality
all individuals: 5207
bin: 6.75e1
variant carriers: 26

GenotypeQuality
all individuals: 331
bin: 5.25e1
variant carriers: 25

GenotypeQuality
all individuals: 227
bin: 4.25e1
variant carriers: 16

GenotypeQuality
all individuals: 179
bin: 7.5e0
variant carriers: 7

GenotypeQuality
all individuals: 77
bin: 1.75e1
variant carriers: 11

GenotypeQuality
all individuals: 367
bin: 3.75e1
variant carriers: 14

GenotypeQuality
all individuals: 224
bin: 5.75e1
variant carriers: 23

GenotypeQuality
all individuals: 581
bin: 3.25e1
variant carriers: 9

GenotypeQuality
all individuals: 2552
bin: 2.25e1
variant carriers: 8

GenotypeQuality
all individuals: 600
bin: 8.25e1
variant carriers: 48

GenotypeQuality
all individuals: 1385
bin: 7.25e1
variant carriers: 28

GenotypeQuality
all individuals: 37731
bin: 6.25e1
variant carriers: 26

GenotypeQuality
all individuals: 52
bin: 2.5e0
variant carriers: 3

GenotypeQuality
all individuals: 8171
bin: 9.75e1
variant carriers: 7767

GenotypeQuality
all individuals: 217
bin: 8.75e1
variant carriers: 33

GenotypeQuality
all individuals: 353
bin: 4.75e1
variant carriers: 18

GenotypeQuality
all individuals: 248
bin: 9.25e1
variant carriers: 44

GenotypeQuality
all individuals: 1325
bin: 7.75e1
variant carriers: 32

Latino
type: Population
allele count: 1321
allele frequency: 1.166137005649718e-1
allele num: 11328
num of homozygotes: 79

African
type: Population
allele count: 92
allele frequency: 1.027703306523682e-2
allele num: 8952
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 171
allele frequency: 2.768782383419689e-2
allele num: 6176
num of homozygotes: 3

Other
type: Population
allele count: 44
allele frequency: 5.188679245283019e-2
allele num: 848
num of homozygotes: 1

East Asian
type: Population
allele count: 2020
allele frequency: 2.38039123261843e-1
allele num: 8486
num of homozygotes: 234

European (Non-Finnish)
type: Population
allele count: 3308
allele frequency: 5.158272259472946e-2
allele num: 64130
num of homozygotes: 96

South Asian
type: Population
allele count: 1643
allele frequency: 1.015827871893162e-1
allele num: 16174
num of homozygotes: 88

DP
type: SiteQuality
SIO_000300: 1.550038e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.08e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.18e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.028e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.235e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.59e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.23e-2

GenotypeQuality
all individuals: 6326
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2594
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 592
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 165
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1702
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 609
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42892
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 711
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1696
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.176652254478072e-5
allele num: 16190
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8968
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6190
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64204
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11338
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.96e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.32e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.26e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.48e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.435713e6

QD
type: SiteQuality
SIO_000300: 7.22e0

GenotypeQuality
all individuals: 48
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2526
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 706
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42953
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1700
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 588
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 263
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1688
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64256
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16216
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6212
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.114081996434938e-4
allele num: 8976
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11342
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.699e1

DP
type: SiteQuality
SIO_000300: 1.437523e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.295e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.52e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.52e0

FS
type: SiteQuality
SIO_000300: 8.141999999999999e0

MQ
type: SiteQuality
SIO_000300: 5.911e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.53e-1

GenotypeQuality
all individuals: 28
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2526
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1700
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 588
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6337
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42953
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 706
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1688
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6212
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64256
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11342
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.23334977799704e-4
allele num: 16216
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8976
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.699e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.52e-1

FS
type: SiteQuality
SIO_000300: 8.141999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.52e0

MQ
type: SiteQuality
SIO_000300: 5.911e1

MQRankSum
type: SiteQuality
SIO_000300: 5.21e-1

DP
type: SiteQuality
SIO_000300: 1.437523e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.295e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.53e-1

GenotypeQuality
all individuals: 57
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 433
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6361
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1699
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 559
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 9.75e1
variant carriers: 16

GenotypeQuality
all individuals: 43375
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 9.25e1
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GenotypeQuality
all individuals: 429
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1689
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6226
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.17343346632246e-4
allele num: 8522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.76735226495992e-5
allele num: 64372
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11336
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16246
num of homozygotes: 0

African
type: Population
allele count: 10
allele frequency: 1.107910480833149e-3
allele num: 9026
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.72e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.200000000000001e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.45e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.13e0

DP
type: SiteQuality
SIO_000300: 1.440972e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.3e-1

QD
type: SiteQuality
SIO_000300: 1.142e1

GenotypeQuality
all individuals: 134
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 5.75e1
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GenotypeQuality
all individuals: 510
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GenotypeQuality
all individuals: 6378
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GenotypeQuality
all individuals: 211
bin: 4.25e1
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GenotypeQuality
all individuals: 1686
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variant carriers: 0

GenotypeQuality
all individuals: 355
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variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2328
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 701
bin: 8.25e1
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GenotypeQuality
all individuals: 379
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 42
bin: 1.75e1
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GenotypeQuality
all individuals: 1714
bin: 7.25e1
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GenotypeQuality
all individuals: 493
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43892
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6284
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16290
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.209944751381215e-4
allele num: 9050
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11360
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.5e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.716e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.6e-1

QD
type: SiteQuality
SIO_000300: 9.56e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

FS
type: SiteQuality
SIO_000300: 2.155e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.445129e6

GenotypeQuality
all individuals: 700
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2266
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1683
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1719
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 265
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 9.75e1
variant carriers: 16

GenotypeQuality
all individuals: 43995
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6435
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.102535832414554e-4
allele num: 9070
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16296
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6304
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 16
allele frequency: 2.476396842594026e-4
allele num: 64610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11356
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-2

QD
type: SiteQuality
SIO_000300: 1.308e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.16e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.66e0

DP
type: SiteQuality
SIO_000300: 1.447334e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.9e-2

GenotypeQuality
all individuals: 587
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 31
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2166
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1675
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1709
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44162
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6429
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6314
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9124
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.516174402250352e-4
allele num: 8532
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16300
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11356
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64718
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.17e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 7.42e-1

QD
type: SiteQuality
SIO_000300: 1.19e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.45e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.38e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

DP
type: SiteQuality
SIO_000300: 1.450437e6

GenotypeQuality
all individuals: 315
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2092
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1713
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6462
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44461
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1691
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16312
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.093374152635032e-4
allele num: 9146
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6346
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64828
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.264e0

VQSLOD
type: SiteQuality
SIO_000300: -1.915e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

QD
type: SiteQuality
SIO_000300: 5.59e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.96e-1

DP
type: SiteQuality
SIO_000300: 1.452113e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -7.02e-1

GenotypeQuality
all individuals: 154
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 43245
bin: 6.25e1
variant carriers: 5

GenotypeQuality
all individuals: 25
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1391
bin: 7.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1490
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 269
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 369
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 237
bin: 5.75e1
variant carriers: 4

GenotypeQuality
all individuals: 292
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 498
bin: 8.25e1
variant carriers: 7

GenotypeQuality
all individuals: 120
bin: 7.5e0
variant carriers: 3

GenotypeQuality
all individuals: 133
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1959
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 9.25e1
variant carriers: 4

GenotypeQuality
all individuals: 6038
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3383
bin: 9.75e1
variant carriers: 3174

African
type: Population
allele count: 49
allele frequency: 5.345843334060659e-3
allele num: 9166
num of homozygotes: 0

Latino
type: Population
allele count: 145
allele frequency: 1.275734647193384e-2
allele num: 11366
num of homozygotes: 1

South Asian
type: Population
allele count: 411
allele frequency: 2.517456817346564e-2
allele num: 16326
num of homozygotes: 8

European (Finnish)
type: Population
allele count: 273
allele frequency: 4.280338664158043e-2
allele num: 6378
num of homozygotes: 4

Other
type: Population
allele count: 31
allele frequency: 3.596287703016241e-2
allele num: 862
num of homozygotes: 1

East Asian
type: Population
allele count: 1
allele frequency: 1.171234481143125e-4
allele num: 8538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2342
allele frequency: 3.605961692430868e-2
allele num: 64948
num of homozygotes: 32

BaseQRankSum
type: SiteQuality
SIO_000300: -7.13e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

DP
type: SiteQuality
SIO_000300: 1.516186e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.93e-1

QD
type: SiteQuality
SIO_000300: 1.319e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.97e-1

FS
type: SiteQuality
SIO_000300: 5.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.53e0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1614
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1501
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6489
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 547
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1841
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 145
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6412
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65224
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11372
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.166377816291161e-4
allele num: 9232
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16326
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.319e0

VQSLOD
type: SiteQuality
SIO_000300: 1.31e0

DP
type: SiteQuality
SIO_000300: 1.457461e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.65e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.48e-1

QD
type: SiteQuality
SIO_000300: 1.157e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.026e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.75e0

GenotypeQuality
all individuals: 317
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45932
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1501
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1848
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6495
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 220
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1607
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11378
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.132335806708775e-5
allele num: 65228
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9232
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16328
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.183e1

VQSLOD
type: SiteQuality
SIO_000300: 2.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.6e-2

MQ
type: SiteQuality
SIO_000300: 5.967e1

MQRankSum
type: SiteQuality
SIO_000300: 1.18e-1

FS
type: SiteQuality
SIO_000300: 3.992e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.12e-1

DP
type: SiteQuality
SIO_000300: 1.457694e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.84e0

GenotypeQuality
all individuals: 45932
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1848
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1607
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 543
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6495
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1501
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65228
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9232
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6404
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.124448799608035e-5
allele num: 16328
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.183e1

MQRankSum
type: SiteQuality
SIO_000300: 1.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

DP
type: SiteQuality
SIO_000300: 1.457694e6

VQSLOD
type: SiteQuality
SIO_000300: 2.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.12e-1

FS
type: SiteQuality
SIO_000300: 3.992e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.84e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.6e-2

MQ
type: SiteQuality
SIO_000300: 5.967e1

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1569
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 147
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1945
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6446
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1459
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45590
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6418
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11322
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.589261128958238e-5
allele num: 65370
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.26e-1

DP
type: SiteQuality
SIO_000300: 1.45806e6

VQSLOD
type: SiteQuality
SIO_000300: 1.38e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.97e-1

FS
type: SiteQuality
SIO_000300: 5.772e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

QD
type: SiteQuality
SIO_000300: 1.123e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.63e-1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9294
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11308
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.060256449490467e-5
allele num: 65354
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6412
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16222
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.120000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.75e-1

VQSLOD
type: SiteQuality
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ReadPosRankSum
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FS
type: SiteQuality
SIO_000300: 1.1457e1

MQ
type: SiteQuality
SIO_000300: 5.978e1

QD
type: SiteQuality
SIO_000300: 1.133e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

DP
type: SiteQuality
SIO_000300: 1.45542e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.21e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11302
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9282
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.530643482520051e-5
allele num: 65332
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6412
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16200
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.17e-1

QD
type: SiteQuality
SIO_000300: 1.25e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.19e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.58e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.084e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.8e-1

DP
type: SiteQuality
SIO_000300: 1.453837e6

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 195
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variant carriers: 0

GenotypeQuality
all individuals: 1546
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6412
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.061286965040103e-5
allele num: 65332
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11302
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16200
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9282
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.17e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.084e0

VQSLOD
type: SiteQuality
SIO_000300: 4.58e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.25e1

DP
type: SiteQuality
SIO_000300: 1.453837e6

GenotypeQuality
all individuals: 222
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 419
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9294
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.177578897786152e-4
allele num: 8492
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11294
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6408
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.531440472908818e-5
allele num: 65298
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.087563295047548e-4
allele num: 16194
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.962e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.5e-1

QD
type: SiteQuality
SIO_000300: 1.274e1

FS
type: SiteQuality
SIO_000300: 3.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

DP
type: SiteQuality
SIO_000300: 1.453016e6

MQRankSum
type: SiteQuality
SIO_000300: -8.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.51e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.909999999999999e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.06044376434583e-5
allele num: 65350
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.865248226950355e-5
allele num: 11280
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16174
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.177856301531213e-4
allele num: 8490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6404
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

DP
type: SiteQuality
SIO_000300: 1.453707e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.4e-1

MQRankSum
type: SiteQuality
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ClippingRankSum
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MQ
type: SiteQuality
SIO_000300: 5.951e1

FS
type: SiteQuality
SIO_000300: 2.406e0

QD
type: SiteQuality
SIO_000300: 1.186e1

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.74e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 4
allele frequency: 4.284490145672665e-4
allele num: 9336
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16114
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65354
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.904719501335708e-5
allele num: 11230
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6400
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.41e-1

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.448128e6

InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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BaseQRankSum
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MQ
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SIO_000300: 5.969e1

FS
type: SiteQuality
SIO_000300: 9.701000000000001e0

QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 474
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11026
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6338
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8384
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9218
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.541924939093965e-5
allele num: 64854
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.386e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.85e-1

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1389
bin: 7.25e1
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5804
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1305
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.199328376109379e-4
allele num: 8338
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.100486776423899e-5
allele num: 64506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6298
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9130
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.86e-1

QD
type: SiteQuality
SIO_000300: 9.31e0

DP
type: SiteQuality
SIO_000300: 1.415475e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

FS
type: SiteQuality
SIO_000300: 8.44e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.19e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.33e-1

GenotypeQuality
all individuals: 453
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 933
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 709
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1394
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 57
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 9.75e1
variant carriers: 22

GenotypeQuality
all individuals: 399
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 20
allele frequency: 1.261034047919294e-3
allele num: 15860
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.094570928196147e-4
allele num: 9136
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.551542232979582e-5
allele num: 64452
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8332
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6306
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.6e0

MQRankSum
type: SiteQuality
SIO_000300: 1.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.5e-2

QD
type: SiteQuality
SIO_000300: 1.304e1

FS
type: SiteQuality
SIO_000300: 1.758e0

DP
type: SiteQuality
SIO_000300: 1.413632e6

BaseQRankSum
type: SiteQuality
SIO_000300: 9.53e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.91e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

GenotypeQuality
all individuals: 32
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 7.5e0
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GenotypeQuality
all individuals: 134
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 767
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variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 9.75e1
variant carriers: 6

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8332
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64452
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 6.567425569176883e-4
allele num: 9136
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6306
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15860
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10894
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.53e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.6e0

MQRankSum
type: SiteQuality
SIO_000300: 1.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.91e-1

FS
type: SiteQuality
SIO_000300: 1.758e0

QD
type: SiteQuality
SIO_000300: 1.304e1

DP
type: SiteQuality
SIO_000300: 1.413632e6

GenotypeQuality
all individuals: 520
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 802
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 875
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variant carriers: 0

GenotypeQuality
all individuals: 1242
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variant carriers: 0

GenotypeQuality
all individuals: 132
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variant carriers: 0

GenotypeQuality
all individuals: 120
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variant carriers: 0

GenotypeQuality
all individuals: 1139
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 727
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variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1337
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variant carriers: 0

GenotypeQuality
all individuals: 40060
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 987
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1012
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5508
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5049
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63778
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8210
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15734
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10664
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6226
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.105705440070765e-4
allele num: 9044
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.26e-1

MQ
type: SiteQuality
SIO_000300: 5.666e1

QD
type: SiteQuality
SIO_000300: 1.499e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

FS
type: SiteQuality
SIO_000300: 1.537e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.245e0

DP
type: SiteQuality
SIO_000300: 1.389717e6

VQSLOD
type: SiteQuality
SIO_000300: -1.346e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.46e-1

GenotypeQuality
all individuals: 844
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 462
bin: 9.75e1
variant carriers: 253

GenotypeQuality
all individuals: 45
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 774
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variant carriers: 0

GenotypeQuality
all individuals: 967
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variant carriers: 0

GenotypeQuality
all individuals: 6202
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variant carriers: 1

GenotypeQuality
all individuals: 1313
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variant carriers: 1

GenotypeQuality
all individuals: 158
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variant carriers: 0

GenotypeQuality
all individuals: 39232
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variant carriers: 0

GenotypeQuality
all individuals: 5220
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variant carriers: 0

GenotypeQuality
all individuals: 1112
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variant carriers: 0

GenotypeQuality
all individuals: 1221
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
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GenotypeQuality
all individuals: 68
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 479
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variant carriers: 0

GenotypeQuality
all individuals: 1165
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 392
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variant carriers: 1

GenotypeQuality
all individuals: 527
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 77
allele frequency: 1.221059308594989e-3
allele num: 63060
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6156
num of homozygotes: 0

East Asian
type: Population
allele count: 161
allele frequency: 1.994549058473736e-2
allele num: 8072
num of homozygotes: 1

South Asian
type: Population
allele count: 8
allele frequency: 5.140066820868671e-4
allele num: 15564
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.380952380952381e-3
allele num: 840
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.480286738351254e-4
allele num: 8928
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.772814051164567e-4
allele num: 10476
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.226e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.9e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.779e0

VQSLOD
type: SiteQuality
SIO_000300: 3.64e0

DP
type: SiteQuality
SIO_000300: 1.366709e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.47e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.17e-1

GenotypeQuality
all individuals: 5205
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 787
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1214
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GenotypeQuality
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GenotypeQuality
all individuals: 1309
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 214
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variant carriers: 5

GenotypeQuality
all individuals: 68
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variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 989
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.176418270757893e-5
allele num: 62964
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.584052137243626e-5
allele num: 10434
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6148
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8038
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8908
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.28633907898122e-4
allele num: 15548
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.358309e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.99e-1

FS
type: SiteQuality
SIO_000300: 7.95e0

MQRankSum
type: SiteQuality
SIO_000300: 1.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.21e0

QD
type: SiteQuality
SIO_000300: 1.379e1

GenotypeQuality
all individuals: 495
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1004
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 38977
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variant carriers: 0

GenotypeQuality
all individuals: 116
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GenotypeQuality
all individuals: 1206
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6140
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8014
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.593371574251115e-5
allele num: 62760
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.348497e6

MQRankSum
type: SiteQuality
SIO_000300: -3.42e-1

QD
type: SiteQuality
SIO_000300: 1.223e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.366e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.32e-1

GenotypeQuality
all individuals: 36603
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
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GenotypeQuality
all individuals: 114
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GenotypeQuality
all individuals: 560
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GenotypeQuality
all individuals: 378
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GenotypeQuality
all individuals: 65
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GenotypeQuality
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GenotypeQuality
all individuals: 1169
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GenotypeQuality
all individuals: 95
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GenotypeQuality
all individuals: 1610
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variant carriers: 0

GenotypeQuality
all individuals: 1468
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variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 164
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GenotypeQuality
all individuals: 974
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1178
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 632
bin: 5.75e1
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GenotypeQuality
all individuals: 210
bin: 9.75e1
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GenotypeQuality
all individuals: 1038
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1178
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6064
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8804
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62158
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 1
allele frequency: 6.503642039542144e-5
allele num: 15376
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.54e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.53e0

BaseQRankSum
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SIO_000300: -3.454e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.993e0

QD
type: SiteQuality
SIO_000300: 9.74e0

DP
type: SiteQuality
SIO_000300: 1.324214e6

VQSLOD
type: SiteQuality
SIO_000300: -1.345e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15220
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.625699050591755e-5
allele num: 61512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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num of homozygotes: 0

InbreedingCoeff
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MQ
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BaseQRankSum
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MQRankSum
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SIO_000300: -1.29e-1

FS
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SIO_000300: 1.042e0

ReadPosRankSum
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SIO_000300: 1.14e0

ClippingRankSum
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SIO_000300: -8.82e-1

VQSLOD
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QD
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DP
type: SiteQuality
SIO_000300: 1.299488e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10032
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.877097151775263e-5
allele num: 61512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
allele num: 15220
num of homozygotes: 0

East Asian
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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SIO_000300: 1.14e0

FS
type: SiteQuality
SIO_000300: 1.042e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
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DP
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SIO_000300: 1.299488e6

MQRankSum
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SIO_000300: -1.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.82e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9964
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.671681711802073e-4
allele num: 5982
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.633079661625894e-5
allele num: 61234
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15202
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7724
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.600000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.293985e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.65e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.415e1

VQSLOD
type: SiteQuality
SIO_000300: 2.92e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.85e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.271823059808926e-5
allele num: 61128
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8656
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7702
num of homozygotes: 0

Latino
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allele count: 4
allele frequency: 4.033071183706392e-4
allele num: 9918
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5956
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

VQSLOD
type: SiteQuality
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DP
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QD
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BaseQRankSum
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SIO_000300: -1.854e0

ReadPosRankSum
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FS
type: SiteQuality
SIO_000300: 7.961e0

MQ
type: SiteQuality
SIO_000300: 5.903e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.9e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.653876686954221e-5
allele num: 60464
num of homozygotes: 0

South Asian
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
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FS
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InbreedingCoeff
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QD
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MQRankSum
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ClippingRankSum
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VQSLOD
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5750
num of homozygotes: 0

Latino
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allele frequency: 1.060895395713983e-4
allele num: 9426
num of homozygotes: 0

East Asian
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Other
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South Asian
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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ReadPosRankSum
type: SiteQuality
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DP
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VQSLOD
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QD
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BaseQRankSum
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MQ
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FS
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
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Latino
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allele num: 9182
num of homozygotes: 0

East Asian
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Other
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European (Non-Finnish)
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QD
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BaseQRankSum
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DP
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MQRankSum
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InbreedingCoeff
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MQ
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FS
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1560
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14230
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57408
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.88041832943443e-5
allele num: 14534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7124
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5564
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8958
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8078
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.71e0

FS
type: SiteQuality
SIO_000300: 2.873e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.458e0

QD
type: SiteQuality
SIO_000300: 1.085e1

VQSLOD
type: SiteQuality
SIO_000300: -5.57e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -9.51e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.186512e6

GenotypeQuality
all individuals: 1067
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 827
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 575
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.882312456985548e-5
allele num: 14530
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.40686550365785e-4
allele num: 7108
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.74361835681406e-5
allele num: 57352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5558
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.113833815994654e-4
allele num: 8978
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8076
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.049e0

MQRankSum
type: SiteQuality
SIO_000300: -9.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.72e0

DP
type: SiteQuality
SIO_000300: 1.185509e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.33e-1

QD
type: SiteQuality
SIO_000300: 1.205e1

GenotypeQuality
all individuals: 722
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1642
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variant carriers: 0

GenotypeQuality
all individuals: 2420
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 3
allele frequency: 3.729487817006464e-4
allele num: 8044
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.500420050406049e-5
allele num: 57136
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.834467120181406e-4
allele num: 7056
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.122082585278277e-4
allele num: 8912
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14492
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.12e-1

QD
type: SiteQuality
SIO_000300: 1.137e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.62e-1

FS
type: SiteQuality
SIO_000300: 2.905e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.07e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.181058e6

GenotypeQuality
all individuals: 1862
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1090
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 8.25e1
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GenotypeQuality
all individuals: 786
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14330
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7930
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.787757437070938e-5
allele num: 55936
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5416
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6922
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.2e-1

QD
type: SiteQuality
SIO_000300: 9.300000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

VQSLOD
type: SiteQuality
SIO_000300: -8.73e-1

FS
type: SiteQuality
SIO_000300: 6.186e0

MQRankSum
type: SiteQuality
SIO_000300: 9.58e-1

MQ
type: SiteQuality
SIO_000300: 5.907e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.586e0

DP
type: SiteQuality
SIO_000300: 1.143505e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.75e-1

GenotypeQuality
all individuals: 2784
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1091
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 492
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 624
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GenotypeQuality
all individuals: 1246
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 26318
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GenotypeQuality
all individuals: 16340
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.591695998850658e-5
allele num: 55684
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6866
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14268
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.14408e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.1e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.100000000000001e-1

FS
type: SiteQuality
SIO_000300: 3.133e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.53e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.47e-1

QD
type: SiteQuality
SIO_000300: 4.17e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.47e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

South Asian
type: Population
allele count: 1
allele frequency: 7.00770847932726e-5
allele num: 14270
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.794365691727974e-5
allele num: 55730
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6876
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.62e0

QD
type: SiteQuality
SIO_000300: 1.077e1

InbreedingCoeff
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SIO_000300: 3.7e-3

BaseQRankSum
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SIO_000300: 9.5e-1

DP
type: SiteQuality
SIO_000300: 1.141862e6

FS
type: SiteQuality
SIO_000300: 1.482e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.88e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.37e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
all individuals: 17239
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3217
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55164
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.276161306789178e-4
allele num: 7836
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14170
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5336
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6826
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
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MQRankSum
type: SiteQuality
SIO_000300: 5.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

FS
type: SiteQuality
SIO_000300: 1.21e0

VQSLOD
type: SiteQuality
SIO_000300: 3.35e-1

MQ
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
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SIO_000300: -7.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.837e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
all individuals: 597
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variant carriers: 0

GenotypeQuality
all individuals: 1818
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.874062968515742e-4
allele num: 5336
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14170
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6826
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7836
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55164
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8376
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.4e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.76e-1

FS
type: SiteQuality
SIO_000300: 1.21e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.837e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

VQSLOD
type: SiteQuality
SIO_000300: 3.35e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.125661e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.71e-1

GenotypeQuality
all individuals: 1203
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 9.75e1
variant carriers: 4

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5032
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7786
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.809523809523809e-5
allele num: 52500
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13746
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.335826876836762e-4
allele num: 7486
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6424
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 724
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.274e0

MQRankSum
type: SiteQuality
SIO_000300: 7.29e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.012e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

QD
type: SiteQuality
SIO_000300: 1.211e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.860000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.874e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.68e-1

DP
type: SiteQuality
SIO_000300: 1.059988e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.159e0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 515
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variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7472
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 720
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5034
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7774
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6422
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.286505392013991e-5
allele num: 13724
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.081e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.09e-1

DP
type: SiteQuality
SIO_000300: 1.053218e6

VQSLOD
type: SiteQuality
SIO_000300: 1.28e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

QD
type: SiteQuality
SIO_000300: 1.057e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.52e-1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 351
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 467
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GenotypeQuality
all individuals: 2082
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13474
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 698
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6238
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.916692963079836e-5
allele num: 50704
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7216
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4810
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

FS
type: SiteQuality
SIO_000300: 4.487e0

MQ
type: SiteQuality
SIO_000300: 5.942e1

MQRankSum
type: SiteQuality
SIO_000300: -2.62e-1

QD
type: SiteQuality
SIO_000300: 1.02e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.76e-1

DP
type: SiteQuality
SIO_000300: 1.012426e6

BaseQRankSum
type: SiteQuality
SIO_000300: 7.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.53e-1

GenotypeQuality
all individuals: 3355
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 782
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variant carriers: 0

GenotypeQuality
all individuals: 809
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 206
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variant carriers: 9

GenotypeQuality
all individuals: 488
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variant carriers: 0

GenotypeQuality
all individuals: 1113
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1026
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GenotypeQuality
all individuals: 84
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7216
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 698
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50704
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4810
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7380
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13474
num of homozygotes: 0

East Asian
type: Population
allele count: 10
allele frequency: 1.603077909586406e-3
allele num: 6238
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.76e-1

QD
type: SiteQuality
SIO_000300: 1.02e1

MQ
type: SiteQuality
SIO_000300: 5.942e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.53e-1

FS
type: SiteQuality
SIO_000300: 4.487e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.44e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.62e-1

DP
type: SiteQuality
SIO_000300: 1.012426e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.44e0

GenotypeQuality
all individuals: 622
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 379
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13348
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 678
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7048
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.011424893394481e-5
allele num: 49716
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4686
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6090
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7164
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.92e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

QD
type: SiteQuality
SIO_000300: 1.153e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.607e0

BaseQRankSum
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SIO_000300: -1.202e0

DP
type: SiteQuality
SIO_000300: 9.93089e5

ClippingRankSum
type: SiteQuality
SIO_000300: -4.39e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.000000000000001e-2

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 26

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4686
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13348
num of homozygotes: 0

Latino
type: Population
allele count: 19
allele frequency: 2.65214963707426e-3
allele num: 7164
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.609139914715584e-4
allele num: 49716
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7048
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 678
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6090
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.39e-1

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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DP
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SIO_000300: 9.93089e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6810
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.450116009280742e-4
allele num: 6896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5936
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48256
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.613826709304096e-5
allele num: 13134
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 656
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.6e-1

FS
type: SiteQuality
SIO_000300: 5.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.12e0

DP
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -4.2e-3

BaseQRankSum
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QD
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ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
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SIO_000300: 1.65e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 791
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 69
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24410
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.665184730952016e-5
allele num: 13046
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6748
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47674
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5868
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6836
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.53e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.301e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.268e0

QD
type: SiteQuality
SIO_000300: 3.3e0

FS
type: SiteQuality
SIO_000300: 1.57e0

DP
type: SiteQuality
SIO_000300: 9.56708e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.36e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.62e-1

GenotypeQuality
all individuals: 987
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 693
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1983
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1116
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3456
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3554
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24841
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17646
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 834
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 782
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4384
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12996
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6622
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5840
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.119093028183937e-5
allele num: 47190
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

FS
type: SiteQuality
SIO_000300: 2.837e0

VQSLOD
type: SiteQuality
SIO_000300: -1.277e0

MQ
type: SiteQuality
SIO_000300: 5.707e1

DP
type: SiteQuality
SIO_000300: 9.46926e5

QD
type: SiteQuality
SIO_000300: 9.529999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 1.74e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.493e0

GenotypeQuality
all individuals: 412
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 987
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3456
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 693
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2002
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1116
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1983
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3554
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24841
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 782
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17646
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12996
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4384
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6622
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.712328767123288e-4
allele num: 5840
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47190
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6736
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.837e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

QD
type: SiteQuality
SIO_000300: 9.529999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: -1.277e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.12e-1

MQ
type: SiteQuality
SIO_000300: 5.707e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.493e0

MQRankSum
type: SiteQuality
SIO_000300: 1.74e-1

DP
type: SiteQuality
SIO_000300: 9.46926e5

GenotypeQuality
all individuals: 25223
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1126
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1197
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 709
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 83
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1908
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3537
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 799
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2042
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1116
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3639
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1008
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15920
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6664
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.308402585410896e-4
allele num: 4332
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.771215418091389e-5
allele num: 12868
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6462
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5706
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46454
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.007e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.53e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.84e-1

DP
type: SiteQuality
SIO_000300: 9.30165e5

VQSLOD
type: SiteQuality
SIO_000300: -2.115e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.408e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.77e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.6e-3