http://identifiers.org/exac.variant/17-28434974-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28434974
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28434974
    reference: chr 17
allele count: 22
allele frequency: 1.821915993109845e-4
allele num: 120752
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000378312
  ensembl transcript: ENST00000394835
  gene symbol: EFCAB5
  hgvsc: ENST00000394835.3:c.4444C>A
  hgvsp: ENSP00000378312.3:p.Pro1482Thr
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+9436G>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000417009
  ensembl transcript: ENST00000419434
  gene symbol: EFCAB5
  hgvsc: ENST00000419434.1:c.3490C>A
  hgvsp: ENSP00000417009.1:p.Pro1164Thr
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000465109
  ensembl transcript: ENST00000588978
  gene symbol: EFCAB5
  hgvsc: ENST00000588978.1:c.2255C>A
  hgvsp: ENSP00000465109.1:p.Pro753Thr
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000322003
  ensembl transcript: ENST00000320856
  gene symbol: EFCAB5
  hgvsc: ENST00000320856.5:c.4072C>A
  hgvsp: ENSP00000322003.5:p.Pro1358Thr
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000378309
  ensembl transcript: ENST00000394832
  gene symbol: EFCAB5
  hgvsc: ENST00000394832.2:c.2860C>A
  hgvsp: ENSP00000378309.2:p.Pro954Thr
  variant of: http://identifiers.org/hgnc/24801
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6092
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36632
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11838
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3901
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3163
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2758
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35528
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1271
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro1482Thr
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP

17-28434975-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28434975
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28434975
    reference: chr 17
allele count: 2
allele frequency: 1.656259834042764e-5
allele num: 120754
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000417009
  ensembl transcript: ENST00000419434
  gene symbol: EFCAB5
  hgvsc: ENST00000419434.1:c.3491C>T
  hgvsp: ENSP00000417009.1:p.Pro1164Leu
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000378309
  ensembl transcript: ENST00000394832
  gene symbol: EFCAB5
  hgvsc: ENST00000394832.2:c.2861C>T
  hgvsp: ENSP00000378309.2:p.Pro954Leu
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000465109
  ensembl transcript: ENST00000588978
  gene symbol: EFCAB5
  hgvsc: ENST00000588978.1:c.2256C>T
  hgvsp: ENSP00000465109.1:p.Pro753Leu
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000378312
  ensembl transcript: ENST00000394835
  gene symbol: EFCAB5
  hgvsc: ENST00000394835.3:c.4445C>T
  hgvsp: ENSP00000378312.3:p.Pro1482Leu
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000322003
  ensembl transcript: ENST00000320856
  gene symbol: EFCAB5
  hgvsc: ENST00000320856.5:c.4073C>T
  hgvsp: ENSP00000322003.5:p.Pro1358Leu
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+9435G>A
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11837
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36634
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6094
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4416
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1223
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8068
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1275
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro1482Leu
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

17-28434976-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28434976
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28434976
    reference: chr 17
allele count: 11
allele frequency: 9.109278213918977e-5
allele num: 120756
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000378312
  ensembl transcript: ENST00000394835
  gene symbol: EFCAB5
  hgvsc: ENST00000394835.3:c.4446G>A
  hgvsp: ENST00000394835.3:c.4446G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000417009
  ensembl transcript: ENST00000419434
  gene symbol: EFCAB5
  hgvsc: ENST00000419434.1:c.3492G>A
  hgvsp: ENST00000419434.1:c.3492G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000322003
  ensembl transcript: ENST00000320856
  gene symbol: EFCAB5
  hgvsc: ENST00000320856.5:c.4074G>A
  hgvsp: ENST00000320856.5:c.4074G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+9434C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000378309
  ensembl transcript: ENST00000394832
  gene symbol: EFCAB5
  hgvsc: ENST00000394832.2:c.2862G>A
  hgvsp: ENST00000394832.2:c.2862G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000465109
  ensembl transcript: ENST00000588978
  gene symbol: EFCAB5
  hgvsc: ENST00000588978.1:c.2257G>A
  hgvsp: ENST00000588978.1:c.2257G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24801
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36629
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11831
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6094
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35526
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1275
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8070
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3899
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1222
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro1482Pro
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

17-28434977-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28434977
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28434977
    reference: chr 17
allele count: 32
allele frequency: 2.650059626341592e-4
allele num: 120752
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000378309
  ensembl transcript: ENST00000394832
  gene symbol: EFCAB5
  hgvsc: ENST00000394832.2:c.2863T>C
  hgvsp: ENST00000394832.2:c.2863T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000322003
  ensembl transcript: ENST00000320856
  gene symbol: EFCAB5
  hgvsc: ENST00000320856.5:c.4075T>C
  hgvsp: ENST00000320856.5:c.4075T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000378312
  ensembl transcript: ENST00000394835
  gene symbol: EFCAB5
  hgvsc: ENST00000394835.3:c.4447T>C
  hgvsp: ENST00000394835.3:c.4447T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+9433A>G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000417009
  ensembl transcript: ENST00000419434
  gene symbol: EFCAB5
  hgvsc: ENST00000419434.1:c.3493T>C
  hgvsp: ENST00000419434.1:c.3493T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000465109
  ensembl transcript: ENST00000588978
  gene symbol: EFCAB5
  hgvsc: ENST00000588978.1:c.2258T>C
  hgvsp: ENST00000588978.1:c.2258T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24801
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11830
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36608
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 9.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6090
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35510
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3161
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3897
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4450
  bin: 9.75e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1223
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1275
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu1483Leu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: T
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

17-28434983-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28434983
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28434983
    reference: chr 17
allele count: 3
allele frequency: 2.484554353767412e-5
allele num: 120746
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000378309
  ensembl transcript: ENST00000394832
  gene symbol: EFCAB5
  hgvsc: ENST00000394832.2:c.2869T>C
  hgvsp: ENSP00000378309.2:p.Ser957Pro
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+9427A>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000465109
  ensembl transcript: ENST00000588978
  gene symbol: EFCAB5
  hgvsc: ENST00000588978.1:c.2264T>C
  hgvsp: ENSP00000465109.1:p.Ser756Pro
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000378312
  ensembl transcript: ENST00000394835
  gene symbol: EFCAB5
  hgvsc: ENST00000394835.3:c.4453T>C
  hgvsp: ENSP00000378312.3:p.Ser1485Pro
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000417009
  ensembl transcript: ENST00000419434
  gene symbol: EFCAB5
  hgvsc: ENST00000419434.1:c.3499T>C
  hgvsp: ENSP00000417009.1:p.Ser1167Pro
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000322003
  ensembl transcript: ENST00000320856
  gene symbol: EFCAB5
  hgvsc: ENST00000320856.5:c.4081T>C
  hgvsp: ENSP00000322003.5:p.Ser1361Pro
  variant of: http://identifiers.org/hgnc/24801
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6093
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36591
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11839
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35500
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1223
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3896
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser1485Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-28434986-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28434986
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28434986
    reference: chr 17
allele count: 1
allele frequency: 8.281985026171072e-6
allele num: 120744
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000322003
  ensembl transcript: ENST00000320856
  gene symbol: EFCAB5
  hgvsc: ENST00000320856.5:c.4084A>G
  hgvsp: ENSP00000322003.5:p.Lys1362Glu
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+9424T>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000465109
  ensembl transcript: ENST00000588978
  gene symbol: EFCAB5
  hgvsc: ENST00000588978.1:c.2267A>G
  hgvsp: ENSP00000465109.1:p.Lys757Glu
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000378309
  ensembl transcript: ENST00000394832
  gene symbol: EFCAB5
  hgvsc: ENST00000394832.2:c.2872A>G
  hgvsp: ENSP00000378309.2:p.Lys958Glu
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000417009
  ensembl transcript: ENST00000419434
  gene symbol: EFCAB5
  hgvsc: ENST00000419434.1:c.3502A>G
  hgvsp: ENSP00000417009.1:p.Lys1168Glu
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000378312
  ensembl transcript: ENST00000394835
  gene symbol: EFCAB5
  hgvsc: ENST00000394835.3:c.4456A>G
  hgvsp: ENSP00000378312.3:p.Lys1486Glu
  variant of: http://identifiers.org/hgnc/24801
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36586
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6092
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11841
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1275
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2759
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3897
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3163
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35505
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1223
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Lys1486Glu
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

17-28434988-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28434988
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28434988
    reference: chr 17
allele count: 1
allele frequency: 8.281985026171072e-6
allele num: 120744
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000378309
  ensembl transcript: ENST00000394832
  gene symbol: EFCAB5
  hgvsc: ENST00000394832.2:c.2874G>A
  hgvsp: ENST00000394832.2:c.2874G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000465109
  ensembl transcript: ENST00000588978
  gene symbol: EFCAB5
  hgvsc: ENST00000588978.1:c.2269G>A
  hgvsp: ENST00000588978.1:c.2269G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000378312
  ensembl transcript: ENST00000394835
  gene symbol: EFCAB5
  hgvsc: ENST00000394835.3:c.4458G>A
  hgvsp: ENST00000394835.3:c.4458G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000322003
  ensembl transcript: ENST00000320856
  gene symbol: EFCAB5
  hgvsc: ENST00000320856.5:c.4086G>A
  hgvsp: ENST00000320856.5:c.4086G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+9422C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000417009
  ensembl transcript: ENST00000419434
  gene symbol: EFCAB5
  hgvsc: ENST00000419434.1:c.3504G>A
  hgvsp: ENST00000419434.1:c.3504G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24801
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36586
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11838
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6093
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4449
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8067
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2759
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3895
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3162
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1275
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Lys1486Lys
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

17-28434990-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28434990
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28434990
    reference: chr 17
allele count: 1
allele frequency: 8.282122210995345e-6
allele num: 120742
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000417009
  ensembl transcript: ENST00000419434
  gene symbol: EFCAB5
  hgvsc: ENST00000419434.1:c.3506C>T
  hgvsp: ENSP00000417009.1:p.Thr1169Ile
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000378309
  ensembl transcript: ENST00000394832
  gene symbol: EFCAB5
  hgvsc: ENST00000394832.2:c.2876C>T
  hgvsp: ENSP00000378309.2:p.Thr959Ile
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000465109
  ensembl transcript: ENST00000588978
  gene symbol: EFCAB5
  hgvsc: ENST00000588978.1:c.2271C>T
  hgvsp: ENSP00000465109.1:p.Thr758Ile
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000378312
  ensembl transcript: ENST00000394835
  gene symbol: EFCAB5
  hgvsc: ENST00000394835.3:c.4460C>T
  hgvsp: ENSP00000378312.3:p.Thr1487Ile
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000322003
  ensembl transcript: ENST00000320856
  gene symbol: EFCAB5
  hgvsc: ENST00000320856.5:c.4088C>T
  hgvsp: ENSP00000322003.5:p.Thr1363Ile
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+9420G>A
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6091
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11838
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36586
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1224
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1275
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8065
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Thr1487Ile
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP

17-28435002-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28435002
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28435002
    reference: chr 17
allele count: 1
allele frequency: 8.282122210995345e-6
allele num: 120742
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+9408A>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000322003
  ensembl transcript: ENST00000320856
  gene symbol: EFCAB5
  hgvsc: ENST00000320856.5:c.4100T>C
  hgvsp: ENSP00000322003.5:p.Met1367Thr
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000378309
  ensembl transcript: ENST00000394832
  gene symbol: EFCAB5
  hgvsc: ENST00000394832.2:c.2888T>C
  hgvsp: ENSP00000378309.2:p.Met963Thr
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000378312
  ensembl transcript: ENST00000394835
  gene symbol: EFCAB5
  hgvsc: ENST00000394835.3:c.4472T>C
  hgvsp: ENSP00000378312.3:p.Met1491Thr
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000417009
  ensembl transcript: ENST00000419434
  gene symbol: EFCAB5
  hgvsc: ENST00000419434.1:c.3518T>C
  hgvsp: ENSP00000417009.1:p.Met1173Thr
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000465109
  ensembl transcript: ENST00000588978
  gene symbol: EFCAB5
  hgvsc: ENST00000588978.1:c.2283T>C
  hgvsp: ENSP00000465109.1:p.Met762Thr
  variant of: http://identifiers.org/hgnc/24801
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11842
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36577
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6093
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3894
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3163
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8066
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Met1491Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/17-28435008-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28435008
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28435009
    reference: chr 17
allele count: 1
allele frequency: 8.28225940036442e-6
allele num: 120740
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000417009
  ensembl transcript: ENST00000419434
  gene symbol: EFCAB5
  hgvsc: ENST00000419434.1:c.3529dupA
  hgvsp: ENSP00000417009.1:p.Met1177AsnfsTer45
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000378312
  ensembl transcript: ENST00000394835
  gene symbol: EFCAB5
  hgvsc: ENST00000394835.3:c.4483dupA
  hgvsp: ENSP00000378312.3:p.Met1495AsnfsTer45
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000322003
  ensembl transcript: ENST00000320856
  gene symbol: EFCAB5
  hgvsc: ENST00000320856.5:c.4111dupA
  hgvsp: ENSP00000322003.5:p.Met1371AsnfsTer45
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000465109
  ensembl transcript: ENST00000588978
  gene symbol: EFCAB5
  hgvsc: ENST00000588978.1:c.2294dupA
  hgvsp: ENSP00000465109.1:p.Met766AsnfsTer45
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+9401dupT
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000378309
  ensembl transcript: ENST00000394832
  gene symbol: EFCAB5
  hgvsc: ENST00000394832.2:c.2899dupA
  hgvsp: ENSP00000378309.2:p.Met967AsnfsTer45
  variant of: http://identifiers.org/hgnc/24801
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6094
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11839
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36573
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8062
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3893
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1274
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Met1495AsnfsTer45
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

17-28435009-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28435009
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28435009
    reference: chr 17
allele count: 21
allele frequency: 1.739303284798489e-4
allele num: 120738
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000378312
  ensembl transcript: ENST00000394835
  gene symbol: EFCAB5
  hgvsc: ENST00000394835.3:c.4479A>T
  hgvsp: ENST00000394835.3:c.4479A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000378309
  ensembl transcript: ENST00000394832
  gene symbol: EFCAB5
  hgvsc: ENST00000394832.2:c.2895A>T
  hgvsp: ENST00000394832.2:c.2895A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000465109
  ensembl transcript: ENST00000588978
  gene symbol: EFCAB5
  hgvsc: ENST00000588978.1:c.2290A>T
  hgvsp: ENST00000588978.1:c.2290A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000322003
  ensembl transcript: ENST00000320856
  gene symbol: EFCAB5
  hgvsc: ENST00000320856.5:c.4107A>T
  hgvsp: ENST00000320856.5:c.4107A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000417009
  ensembl transcript: ENST00000419434
  gene symbol: EFCAB5
  hgvsc: ENST00000419434.1:c.3525A>T
  hgvsp: ENST00000419434.1:c.3525A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+9401T>A
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6087
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36568
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 9.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11834
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8061
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2756
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35486
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3890
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala1493Ala
num of homozygotes: 1
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

17-28435018-A-AG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28435018
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28435019
    reference: chr 17
allele count: 1
allele frequency: 8.282808203293245e-6
allele num: 120732
alternate allele: AG
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000465109
  ensembl transcript: ENST00000588978
  gene symbol: EFCAB5
  hgvsc: ENST00000588978.1:c.2303dupG
  hgvsp: ENSP00000465109.1:p.Glu769GlyfsTer42
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000378312
  ensembl transcript: ENST00000394835
  gene symbol: EFCAB5
  hgvsc: ENST00000394835.3:c.4492dupG
  hgvsp: ENSP00000378312.3:p.Glu1498GlyfsTer42
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000322003
  ensembl transcript: ENST00000320856
  gene symbol: EFCAB5
  hgvsc: ENST00000320856.5:c.4120dupG
  hgvsp: ENSP00000322003.5:p.Glu1374GlyfsTer42
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000378309
  ensembl transcript: ENST00000394832
  gene symbol: EFCAB5
  hgvsc: ENST00000394832.2:c.2908dupG
  hgvsp: ENSP00000378309.2:p.Glu970GlyfsTer42
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+9391dupC
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000417009
  ensembl transcript: ENST00000419434
  gene symbol: EFCAB5
  hgvsc: ENST00000419434.1:c.3538dupG
  hgvsp: ENSP00000417009.1:p.Glu1180GlyfsTer42
  variant of: http://identifiers.org/hgnc/24801
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6087
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11840
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36561
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1225
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35475
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3891
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3159
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Glu1498GlyfsTer42
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

17-28435019-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28435019
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28435019
    reference: chr 17
allele count: 18
allele frequency: 1.490954873765821e-4
allele num: 120728
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000378309
  ensembl transcript: ENST00000394832
  gene symbol: EFCAB5
  hgvsc: ENST00000394832.2:c.2905G>C
  hgvsp: ENSP00000378309.2:p.Gly969Arg
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000322003
  ensembl transcript: ENST00000320856
  gene symbol: EFCAB5
  hgvsc: ENST00000320856.5:c.4117G>C
  hgvsp: ENSP00000322003.5:p.Gly1373Arg
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+9391C>G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000378312
  ensembl transcript: ENST00000394835
  gene symbol: EFCAB5
  hgvsc: ENST00000394835.3:c.4489G>C
  hgvsp: ENSP00000378312.3:p.Gly1497Arg
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000417009
  ensembl transcript: ENST00000419434
  gene symbol: EFCAB5
  hgvsc: ENST00000419434.1:c.3535G>C
  hgvsp: ENSP00000417009.1:p.Gly1179Arg
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000465109
  ensembl transcript: ENST00000588978
  gene symbol: EFCAB5
  hgvsc: ENST00000588978.1:c.2300G>C
  hgvsp: ENSP00000465109.1:p.Gly768Arg
  variant of: http://identifiers.org/hgnc/24801
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36547
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 6090
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11832
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1224
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1275
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly1497Arg
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

17-28435025-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28435025
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28435025
    reference: chr 17
allele count: 11
allele frequency: 9.11184374016335e-5
allele num: 120722
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000322003
  ensembl transcript: ENST00000320856
  gene symbol: EFCAB5
  hgvsc: ENST00000320856.5:c.4123G>A
  hgvsp: ENSP00000322003.5:p.Gly1375Ser
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+9385C>T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000378312
  ensembl transcript: ENST00000394835
  gene symbol: EFCAB5
  hgvsc: ENST00000394835.3:c.4495G>A
  hgvsp: ENSP00000378312.3:p.Gly1499Ser
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000417009
  ensembl transcript: ENST00000419434
  gene symbol: EFCAB5
  hgvsc: ENST00000419434.1:c.3541G>A
  hgvsp: ENSP00000417009.1:p.Gly1181Ser
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000465109
  ensembl transcript: ENST00000588978
  gene symbol: EFCAB5
  hgvsc: ENST00000588978.1:c.2306G>A
  hgvsp: ENSP00000465109.1:p.Gly770Ser
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000378309
  ensembl transcript: ENST00000394832
  gene symbol: EFCAB5
  hgvsc: ENST00000394832.2:c.2911G>A
  hgvsp: ENSP00000378309.2:p.Gly971Ser
  variant of: http://identifiers.org/hgnc/24801
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11829
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 36535
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6085
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2759
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3157
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3886
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly1499Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

17-28435047-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28435047
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28435047
    reference: chr 17
allele count: 3
allele frequency: 2.48714972641353e-5
allele num: 120620
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000417009
  ensembl transcript: ENST00000419434
  gene symbol: EFCAB5
  hgvsc: ENST00000419434.1:c.*5G>A
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000378309
  ensembl transcript: ENST00000394832
  gene symbol: EFCAB5
  hgvsc: ENST00000394832.2:c.*5G>A
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000378312
  ensembl transcript: ENST00000394835
  gene symbol: EFCAB5
  hgvsc: ENST00000394835.3:c.*5G>A
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000322003
  ensembl transcript: ENST00000320856
  gene symbol: EFCAB5
  hgvsc: ENST00000320856.5:c.*5G>A
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+9363C>T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000465109
  ensembl transcript: ENST00000588978
  gene symbol: EFCAB5
  hgvsc: ENST00000588978.1:c.*5G>A
  variant of: http://identifiers.org/hgnc/24801
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11801
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6072
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36432
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3873
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1223
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3143
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1274
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35340
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

17-28435049-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28435049
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28435049
    reference: chr 17
allele count: 1
allele frequency: 8.290361625574107e-6
allele num: 120622
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000465109
  ensembl transcript: ENST00000588978
  gene symbol: EFCAB5
  hgvsc: ENST00000588978.1:c.*7A>T
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000378312
  ensembl transcript: ENST00000394835
  gene symbol: EFCAB5
  hgvsc: ENST00000394835.3:c.*7A>T
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000322003
  ensembl transcript: ENST00000320856
  gene symbol: EFCAB5
  hgvsc: ENST00000320856.5:c.*7A>T
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+9361T>A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000378309
  ensembl transcript: ENST00000394832
  gene symbol: EFCAB5
  hgvsc: ENST00000394832.2:c.*7A>T
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000417009
  ensembl transcript: ENST00000419434
  gene symbol: EFCAB5
  hgvsc: ENST00000419434.1:c.*7A>T
  variant of: http://identifiers.org/hgnc/24801
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11794
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6068
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36441
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3143
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4477
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1274
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35357
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2759
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

17-28435051-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28435051
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28435051
    reference: chr 17
allele count: 1
allele frequency: 8.290636555074699e-6
allele num: 120618
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000417009
  ensembl transcript: ENST00000419434
  gene symbol: EFCAB5
  hgvsc: ENST00000419434.1:c.*9G>A
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000378312
  ensembl transcript: ENST00000394835
  gene symbol: EFCAB5
  hgvsc: ENST00000394835.3:c.*9G>A
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+9359C>T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000378309
  ensembl transcript: ENST00000394832
  gene symbol: EFCAB5
  hgvsc: ENST00000394832.2:c.*9G>A
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000465109
  ensembl transcript: ENST00000588978
  gene symbol: EFCAB5
  hgvsc: ENST00000588978.1:c.*9G>A
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000322003
  ensembl transcript: ENST00000320856
  gene symbol: EFCAB5
  hgvsc: ENST00000320856.5:c.*9G>A
  variant of: http://identifiers.org/hgnc/24801
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6068
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36437
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11791
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3868
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2759
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8029
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35353
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum

17-28435052-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28435052
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28435052
    reference: chr 17
allele count: 2
allele frequency: 1.658264791721942e-5
allele num: 120608
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000322003
  ensembl transcript: ENST00000320856
  gene symbol: EFCAB5
  hgvsc: ENST00000320856.5:c.*10A>G
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000417009
  ensembl transcript: ENST00000419434
  gene symbol: EFCAB5
  hgvsc: ENST00000419434.1:c.*10A>G
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000378312
  ensembl transcript: ENST00000394835
  gene symbol: EFCAB5
  hgvsc: ENST00000394835.3:c.*10A>G
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000465109
  ensembl transcript: ENST00000588978
  gene symbol: EFCAB5
  hgvsc: ENST00000588978.1:c.*10A>G
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000378309
  ensembl transcript: ENST00000394832
  gene symbol: EFCAB5
  hgvsc: ENST00000394832.2:c.*10A>G
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+9358T>C
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11781
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36430
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6064
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1275
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1224
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2758
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3869
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ

17-28435061-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28435061
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28435061
    reference: chr 17
allele count: 1
allele frequency: 8.2936619835122e-6
allele num: 120574
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000417009
  ensembl transcript: ENST00000419434
  gene symbol: EFCAB5
  hgvsc: ENST00000419434.1:c.*19T>A
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000322003
  ensembl transcript: ENST00000320856
  gene symbol: EFCAB5
  hgvsc: ENST00000320856.5:c.*19T>A
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000378312
  ensembl transcript: ENST00000394835
  gene symbol: EFCAB5
  hgvsc: ENST00000394835.3:c.*19T>A
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000378309
  ensembl transcript: ENST00000394832
  gene symbol: EFCAB5
  hgvsc: ENST00000394832.2:c.*19T>A
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000465109
  ensembl transcript: ENST00000588978
  gene symbol: EFCAB5
  hgvsc: ENST00000588978.1:c.*19T>A
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+9349A>T
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11742
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36331
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6056
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35188
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1274
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3865
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

17-28435068-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28435068
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28435068
    reference: chr 17
allele count: 2
allele frequency: 1.659337924168257e-5
allele num: 120530
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000465109
  ensembl transcript: ENST00000588978
  gene symbol: EFCAB5
  hgvsc: ENST00000588978.1:c.*26T>G
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000417009
  ensembl transcript: ENST00000419434
  gene symbol: EFCAB5
  hgvsc: ENST00000419434.1:c.*26T>G
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000378309
  ensembl transcript: ENST00000394832
  gene symbol: EFCAB5
  hgvsc: ENST00000394832.2:c.*26T>G
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000322003
  ensembl transcript: ENST00000320856
  gene symbol: EFCAB5
  hgvsc: ENST00000320856.5:c.*26T>G
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+9342A>C
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000378312
  ensembl transcript: ENST00000394835
  gene symbol: EFCAB5
  hgvsc: ENST00000394835.3:c.*26T>G
  variant of: http://identifiers.org/hgnc/24801
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11698
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6052
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36201
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 35017
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1275
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2759
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3138
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7996
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1223
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD

17-28435075-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28435075
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28435075
    reference: chr 17
allele count: 12
allele frequency: 9.961978448919955e-5
allele num: 120458
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000465109
  ensembl transcript: ENST00000588978
  gene symbol: EFCAB5
  hgvsc: ENST00000588978.1:c.*33A>G
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+9335T>C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000417009
  ensembl transcript: ENST00000419434
  gene symbol: EFCAB5
  hgvsc: ENST00000419434.1:c.*33A>G
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000378312
  ensembl transcript: ENST00000394835
  gene symbol: EFCAB5
  hgvsc: ENST00000394835.3:c.*33A>G
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000378309
  ensembl transcript: ENST00000394832
  gene symbol: EFCAB5
  hgvsc: ENST00000394832.2:c.*33A>G
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000322003
  ensembl transcript: ENST00000320856
  gene symbol: EFCAB5
  hgvsc: ENST00000320856.5:c.*33A>G
  variant of: http://identifiers.org/hgnc/24801
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6014
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11613
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 36043
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1221
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4484
  bin: 9.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1275
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34782
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3859
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ

17-28435080-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28435080
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28435080
    reference: chr 17
allele count: 1
allele frequency: 8.305371914554334e-6
allele num: 120404
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+9330G>A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000465109
  ensembl transcript: ENST00000588978
  gene symbol: EFCAB5
  hgvsc: ENST00000588978.1:c.*38C>T
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000417009
  ensembl transcript: ENST00000419434
  gene symbol: EFCAB5
  hgvsc: ENST00000419434.1:c.*38C>T
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000378312
  ensembl transcript: ENST00000394835
  gene symbol: EFCAB5
  hgvsc: ENST00000394835.3:c.*38C>T
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000378309
  ensembl transcript: ENST00000394832
  gene symbol: EFCAB5
  hgvsc: ENST00000394832.2:c.*38C>T
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000322003
  ensembl transcript: ENST00000320856
  gene symbol: EFCAB5
  hgvsc: ENST00000320856.5:c.*38C>T
  variant of: http://identifiers.org/hgnc/24801
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35859
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11527
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6020
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2753
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7919
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34419
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1222
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum

17-28435081-C-CTTTGTTTGTTATCAGT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28435081
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28435097
    reference: chr 17
allele count: 1
allele frequency: 8.306199747491528e-6
allele num: 120392
alternate allele: CTTTGTTTGTTATCAGT
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000322003
  ensembl transcript: ENST00000320856
  gene symbol: EFCAB5
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000378309
  ensembl transcript: ENST00000394832
  gene symbol: EFCAB5
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000417009
  ensembl transcript: ENST00000419434
  gene symbol: EFCAB5
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000378312
  ensembl transcript: ENST00000394835
  gene symbol: EFCAB5
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000465109
  ensembl transcript: ENST00000588978
  gene symbol: EFCAB5
  variant of: http://identifiers.org/hgnc/24801
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11499
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35735
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6015
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4657
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3851
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34259
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1218
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2747
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1270
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

17-28435081-CTTTG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28435081
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28435077
    reference: chr 17
allele count: 195
allele frequency: 1.619708950760848e-3
allele num: 120392
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000465109
  ensembl transcript: ENST00000588978
  gene symbol: EFCAB5
  hgvsc: ENST00000588978.1:c.*46_*49delTGTT
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000417009
  ensembl transcript: ENST00000419434
  gene symbol: EFCAB5
  hgvsc: ENST00000419434.1:c.*46_*49delTGTT
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000378312
  ensembl transcript: ENST00000394835
  gene symbol: EFCAB5
  hgvsc: ENST00000394835.3:c.*46_*49delTGTT
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000322003
  ensembl transcript: ENST00000320856
  gene symbol: EFCAB5
  hgvsc: ENST00000320856.5:c.*46_*49delTGTT
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000176927
  ensembl protein: ENSP00000378309
  ensembl transcript: ENST00000394832
  gene symbol: EFCAB5
  hgvsc: ENST00000394832.2:c.*46_*49delTGTT
  variant of: http://identifiers.org/hgnc/24801
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+9325_106+9328delCAAA
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 11499
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 4.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35735
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6015
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 4.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 9.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34259
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7894
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1218
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 2
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: CTTTG
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

17-28443815-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28443815
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28443815
    reference: chr 17
allele count: 6
allele frequency: 2.22485909225749e-4
allele num: 26968
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464237
  ensembl transcript: ENST00000584423
  gene symbol: NSRP1
  hgvsc: ENST00000584423.1:c.-47T>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+595A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000540900
  gene symbol: NSRP1
  hgvsc: ENST00000540900.3:n.255T>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000247026
  ensembl transcript: ENST00000247026
  gene symbol: NSRP1
  hgvsc: ENST00000247026.5:c.-47T>C
  variant of: http://identifiers.org/hgnc/25305
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22867
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22801
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2801
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8386
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6002
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 991
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2186
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17599
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 843
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13430
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7135
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

17-28443834-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28443834
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28443834
    reference: chr 17
allele count: 448
allele frequency: 1.63075131042516e-2
allele num: 27472
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464237
  ensembl transcript: ENST00000584423
  gene symbol: NSRP1
  hgvsc: ENST00000584423.1:c.-28G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+576C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000540900
  gene symbol: NSRP1
  hgvsc: ENST00000540900.3:n.274G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000247026
  ensembl transcript: ENST00000247026
  gene symbol: NSRP1
  hgvsc: ENST00000247026.5:c.-28G>A
  variant of: http://identifiers.org/hgnc/25305
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 6.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 5.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 19663
  bin: 2.5e0
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 1.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 7.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 4.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 4.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2974
  bin: 1.25e1
  variant carriers: 132
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 3.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 25866
  bin: 7.5e0
  variant carriers: 262
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 6.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 5.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 8.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 9.75e1
  variant carriers: 90
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 7.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 926
  bin: 2.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 2697
  bin: 1.75e1
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 756
  bin: 3.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 7.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 1255
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 3.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 8.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 3388
  bin: 1.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 9.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 21695
  bin: 2.25e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 17305
  bin: 7.5e0
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 6.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 8.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.25e1
  variant carriers: 11
num of homozygotes: 20
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

17-28443838-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28443838
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28443838
    reference: chr 17
allele count: 2
allele frequency: 7.239032865209208e-5
allele num: 27628
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464237
  ensembl transcript: ENST00000584423
  gene symbol: NSRP1
  hgvsc: ENST00000584423.1:c.-24A>G
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000462820
  ensembl transcript: ENST00000584154
  gene symbol: NSRP1
  hgvsc: ENST00000584154.1:c.-24A>G
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000378303
  ensembl transcript: ENST00000394826
  gene symbol: NSRP1
  hgvsc: ENST00000394826.4:c.-24A>G
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000540900
  gene symbol: NSRP1
  hgvsc: ENST00000540900.3:n.278A>G
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000577289
  gene symbol: NSRP1
  hgvsc: ENST00000577289.2:n.2A>G
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+572T>C
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000247026
  ensembl transcript: ENST00000247026
  gene symbol: NSRP1
  hgvsc: ENST00000247026.5:c.-24A>G
  variant of: http://identifiers.org/hgnc/25305
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26787
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18840
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2914
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 922
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD

17-28443838-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28443838
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28443838
    reference: chr 17
allele count: 2
allele frequency: 7.239032865209208e-5
allele num: 27628
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464237
  ensembl transcript: ENST00000584423
  gene symbol: NSRP1
  hgvsc: ENST00000584423.1:c.-24A>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000378303
  ensembl transcript: ENST00000394826
  gene symbol: NSRP1
  hgvsc: ENST00000394826.4:c.-24A>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000462820
  ensembl transcript: ENST00000584154
  gene symbol: NSRP1
  hgvsc: ENST00000584154.1:c.-24A>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000247026
  ensembl transcript: ENST00000247026
  gene symbol: NSRP1
  hgvsc: ENST00000247026.5:c.-24A>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000540900
  gene symbol: NSRP1
  hgvsc: ENST00000540900.3:n.278A>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+572T>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000577289
  gene symbol: NSRP1
  hgvsc: ENST00000577289.2:n.2A>T
  variant of: http://identifiers.org/hgnc/25305
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18840
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26787
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2914
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17021
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23358
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8423
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

http://identifiers.org/exac.variant/17-28443858-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28443858
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28443858
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 28500
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000463722
  ensembl transcript: ENST00000584317
  gene symbol: NSRP1
  hgvsc: ENST00000584317.1:c.-4C>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000583301
  gene symbol: NSRP1
  hgvsc: ENST00000583301.1:n.2C>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000247026
  ensembl transcript: ENST00000247026
  gene symbol: NSRP1
  hgvsc: ENST00000247026.5:c.-4C>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000378303
  ensembl transcript: ENST00000394826
  gene symbol: NSRP1
  hgvsc: ENST00000394826.4:c.-4C>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000462820
  ensembl transcript: ENST00000584154
  gene symbol: NSRP1
  hgvsc: ENST00000584154.1:c.-4C>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464569
  ensembl transcript: ENST00000475652
  gene symbol: NSRP1
  hgvsc: ENST00000475652.1:c.-4C>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464237
  ensembl transcript: ENST00000584423
  gene symbol: NSRP1
  hgvsc: ENST00000584423.1:c.-4C>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000466640
  ensembl transcript: ENST00000479218
  gene symbol: NSRP1
  hgvsc: ENST00000479218.2:c.-4C>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000540900
  gene symbol: NSRP1
  hgvsc: ENST00000540900.3:n.298C>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+552G>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000577289
  gene symbol: NSRP1
  hgvsc: ENST00000577289.2:n.22C>A
  variant of: http://identifiers.org/hgnc/25305
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3084
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16276
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29040
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum

17-28443859-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28443859
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28443859
    reference: chr 17
allele count: 3
allele frequency: 1.048731035447109e-4
allele num: 28606
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000577289
  gene symbol: NSRP1
  hgvsc: ENST00000577289.2:n.23A>G
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+551T>C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000378303
  ensembl transcript: ENST00000394826
  gene symbol: NSRP1
  hgvsc: ENST00000394826.4:c.-3A>G
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000247026
  ensembl transcript: ENST00000247026
  gene symbol: NSRP1
  hgvsc: ENST00000247026.5:c.-3A>G
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000463722
  ensembl transcript: ENST00000584317
  gene symbol: NSRP1
  hgvsc: ENST00000584317.1:c.-3A>G
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000462820
  ensembl transcript: ENST00000584154
  gene symbol: NSRP1
  hgvsc: ENST00000584154.1:c.-3A>G
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000540900
  gene symbol: NSRP1
  hgvsc: ENST00000540900.3:n.299A>G
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000466640
  ensembl transcript: ENST00000479218
  gene symbol: NSRP1
  hgvsc: ENST00000479218.2:c.-3A>G
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464569
  ensembl transcript: ENST00000475652
  gene symbol: NSRP1
  hgvsc: ENST00000475652.1:c.-3A>G
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464237
  ensembl transcript: ENST00000584423
  gene symbol: NSRP1
  hgvsc: ENST00000584423.1:c.-3A>G
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000583301
  gene symbol: NSRP1
  hgvsc: ENST00000583301.1:n.3A>G
  variant of: http://identifiers.org/hgnc/25305
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16178
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3072
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29159
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

17-28443863-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28443863
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28443863
    reference: chr 17
allele count: 4
allele frequency: 1.398699209734947e-4
allele num: 28598
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464237
  ensembl transcript: ENST00000584423
  gene symbol: NSRP1
  hgvsc: ENST00000584423.1:c.2T>C
  hgvsp: ENSP00000464237.1:p.Met1?
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+547A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000577289
  gene symbol: NSRP1
  hgvsc: ENST00000577289.2:n.27T>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000583301
  gene symbol: NSRP1
  hgvsc: ENST00000583301.1:n.7T>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: start_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000463722
  ensembl transcript: ENST00000584317
  gene symbol: NSRP1
  hgvsc: ENST00000584317.1:c.2T>C
  hgvsp: ENSP00000463722.1:p.Met1?
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: start_lost
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000247026
  ensembl transcript: ENST00000247026
  gene symbol: NSRP1
  hgvsc: ENST00000247026.5:c.2T>C
  hgvsp: ENSP00000247026.5:p.Met1?
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: start_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000378303
  ensembl transcript: ENST00000394826
  gene symbol: NSRP1
  hgvsc: ENST00000394826.4:c.2T>C
  hgvsp: ENSP00000378303.4:p.Met1?
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: start_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464569
  ensembl transcript: ENST00000475652
  gene symbol: NSRP1
  hgvsc: ENST00000475652.1:c.2T>C
  hgvsp: ENSP00000464569.1:p.Met1?
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000466640
  ensembl transcript: ENST00000479218
  gene symbol: NSRP1
  hgvsc: ENST00000479218.2:c.2T>C
  hgvsp: ENSP00000466640.1:p.Met1?
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: start_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000462820
  ensembl transcript: ENST00000584154
  gene symbol: NSRP1
  hgvsc: ENST00000584154.1:c.2T>C
  hgvsp: ENSP00000462820.1:p.Met1?
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000540900
  gene symbol: NSRP1
  hgvsc: ENST00000540900.3:n.303T>C
  variant of: http://identifiers.org/hgnc/25305
canonical: true
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29256
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3086
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 16061
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met1?
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

17-28443871-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28443871
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28443871
    reference: chr 17
allele count: 1
allele frequency: 3.494060097833683e-5
allele num: 28620
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000466640
  ensembl transcript: ENST00000479218
  gene symbol: NSRP1
  hgvsc: ENST00000479218.2:c.10C>T
  hgvsp: ENSP00000466640.1:p.Pro4Ser
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000540900
  gene symbol: NSRP1
  hgvsc: ENST00000540900.3:n.311C>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000577289
  gene symbol: NSRP1
  hgvsc: ENST00000577289.2:n.35C>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+539G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000462820
  ensembl transcript: ENST00000584154
  gene symbol: NSRP1
  hgvsc: ENST00000584154.1:c.10C>T
  hgvsp: ENSP00000462820.1:p.Pro4Ser
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464569
  ensembl transcript: ENST00000475652
  gene symbol: NSRP1
  hgvsc: ENST00000475652.1:c.10C>T
  hgvsp: ENSP00000464569.1:p.Pro4Ser
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000247026
  ensembl transcript: ENST00000247026
  gene symbol: NSRP1
  hgvsc: ENST00000247026.5:c.10C>T
  hgvsp: ENSP00000247026.5:p.Pro4Ser
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000463722
  ensembl transcript: ENST00000584317
  gene symbol: NSRP1
  hgvsc: ENST00000584317.1:c.10C>T
  hgvsp: ENSP00000463722.1:p.Pro4Ser
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000378303
  ensembl transcript: ENST00000394826
  gene symbol: NSRP1
  hgvsc: ENST00000394826.4:c.10C>T
  hgvsp: ENSP00000378303.4:p.Pro4Ser
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000583301
  gene symbol: NSRP1
  hgvsc: ENST00000583301.1:n.15C>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464237
  ensembl transcript: ENST00000584423
  gene symbol: NSRP1
  hgvsc: ENST00000584423.1:c.10C>T
  hgvsp: ENSP00000464237.1:p.Pro4Ser
  variant of: http://identifiers.org/hgnc/25305
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29117
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16059
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3197
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro4Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/17-28443877-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28443877
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28443877
    reference: chr 17
allele count: 1
allele frequency: 3.476326218452339e-5
allele num: 28766
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000540900
  gene symbol: NSRP1
  hgvsc: ENST00000540900.3:n.317A>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000583301
  gene symbol: NSRP1
  hgvsc: ENST00000583301.1:n.21A>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000462820
  ensembl transcript: ENST00000584154
  gene symbol: NSRP1
  hgvsc: ENST00000584154.1:c.16A>C
  hgvsp: ENST00000584154.1:c.16A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000466640
  ensembl transcript: ENST00000479218
  gene symbol: NSRP1
  hgvsc: ENST00000479218.2:c.16A>C
  hgvsp: ENST00000479218.2:c.16A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+533T>G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000378303
  ensembl transcript: ENST00000394826
  gene symbol: NSRP1
  hgvsc: ENST00000394826.4:c.16A>C
  hgvsp: ENST00000394826.4:c.16A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000247026
  ensembl transcript: ENST00000247026
  gene symbol: NSRP1
  hgvsc: ENST00000247026.5:c.16A>C
  hgvsp: ENST00000247026.5:c.16A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464569
  ensembl transcript: ENST00000475652
  gene symbol: NSRP1
  hgvsc: ENST00000475652.1:c.16A>C
  hgvsp: ENST00000475652.1:c.16A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000463722
  ensembl transcript: ENST00000584317
  gene symbol: NSRP1
  hgvsc: ENST00000584317.1:c.16A>C
  hgvsp: ENST00000584317.1:c.16A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464237
  ensembl transcript: ENST00000584423
  gene symbol: NSRP1
  hgvsc: ENST00000584423.1:c.16A>C
  hgvsp: ENST00000584423.1:c.16A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000577289
  gene symbol: NSRP1
  hgvsc: ENST00000577289.2:n.41A>C
  variant of: http://identifiers.org/hgnc/25305
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28374
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16803
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3294
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg6Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: A
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

17-28443877-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28443877
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28443877
    reference: chr 17
allele count: 1
allele frequency: 3.476326218452339e-5
allele num: 28766
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000462820
  ensembl transcript: ENST00000584154
  gene symbol: NSRP1
  hgvsc: ENST00000584154.1:c.16A>T
  hgvsp: ENSP00000462820.1:p.Arg6Trp
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000466640
  ensembl transcript: ENST00000479218
  gene symbol: NSRP1
  hgvsc: ENST00000479218.2:c.16A>T
  hgvsp: ENSP00000466640.1:p.Arg6Trp
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464237
  ensembl transcript: ENST00000584423
  gene symbol: NSRP1
  hgvsc: ENST00000584423.1:c.16A>T
  hgvsp: ENSP00000464237.1:p.Arg6Trp
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000378303
  ensembl transcript: ENST00000394826
  gene symbol: NSRP1
  hgvsc: ENST00000394826.4:c.16A>T
  hgvsp: ENSP00000378303.4:p.Arg6Trp
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000463722
  ensembl transcript: ENST00000584317
  gene symbol: NSRP1
  hgvsc: ENST00000584317.1:c.16A>T
  hgvsp: ENSP00000463722.1:p.Arg6Trp
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464569
  ensembl transcript: ENST00000475652
  gene symbol: NSRP1
  hgvsc: ENST00000475652.1:c.16A>T
  hgvsp: ENSP00000464569.1:p.Arg6Trp
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000577289
  gene symbol: NSRP1
  hgvsc: ENST00000577289.2:n.41A>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000247026
  ensembl transcript: ENST00000247026
  gene symbol: NSRP1
  hgvsc: ENST00000247026.5:c.16A>T
  hgvsp: ENSP00000247026.5:p.Arg6Trp
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000540900
  gene symbol: NSRP1
  hgvsc: ENST00000540900.3:n.317A>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000583301
  gene symbol: NSRP1
  hgvsc: ENST00000583301.1:n.21A>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+533T>A
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3294
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28374
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16803
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg6Trp
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/17-28443880-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28443880
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28443880
    reference: chr 17
allele count: 1
allele frequency: 3.494792758789404e-5
allele num: 28614
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000540900
  gene symbol: NSRP1
  hgvsc: ENST00000540900.3:n.320C>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000378303
  ensembl transcript: ENST00000394826
  gene symbol: NSRP1
  hgvsc: ENST00000394826.4:c.19C>A
  hgvsp: ENSP00000378303.4:p.Gln7Lys
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+530G>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464237
  ensembl transcript: ENST00000584423
  gene symbol: NSRP1
  hgvsc: ENST00000584423.1:c.19C>A
  hgvsp: ENSP00000464237.1:p.Gln7Lys
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000462820
  ensembl transcript: ENST00000584154
  gene symbol: NSRP1
  hgvsc: ENST00000584154.1:c.19C>A
  hgvsp: ENSP00000462820.1:p.Gln7Lys
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464569
  ensembl transcript: ENST00000475652
  gene symbol: NSRP1
  hgvsc: ENST00000475652.1:c.19C>A
  hgvsp: ENSP00000464569.1:p.Gln7Lys
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000247026
  ensembl transcript: ENST00000247026
  gene symbol: NSRP1
  hgvsc: ENST00000247026.5:c.19C>A
  hgvsp: ENSP00000247026.5:p.Gln7Lys
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000466640
  ensembl transcript: ENST00000479218
  gene symbol: NSRP1
  hgvsc: ENST00000479218.2:c.19C>A
  hgvsp: ENSP00000466640.1:p.Gln7Lys
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000583301
  gene symbol: NSRP1
  hgvsc: ENST00000583301.1:n.24C>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000463722
  ensembl transcript: ENST00000584317
  gene symbol: NSRP1
  hgvsc: ENST00000584317.1:c.19C>A
  hgvsp: ENSP00000463722.1:p.Gln7Lys
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000577289
  gene symbol: NSRP1
  hgvsc: ENST00000577289.2:n.44C>A
  variant of: http://identifiers.org/hgnc/25305
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27952
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17213
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3341
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln7Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

17-28443895-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28443895
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28443895
    reference: chr 17
allele count: 1
allele frequency: 3.536818278276862e-5
allele num: 28274
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000463722
  ensembl transcript: ENST00000584317
  gene symbol: NSRP1
  hgvsc: ENST00000584317.1:c.20+14G>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000247026
  ensembl transcript: ENST00000247026
  gene symbol: NSRP1
  hgvsc: ENST00000247026.5:c.20+14G>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464237
  ensembl transcript: ENST00000584423
  gene symbol: NSRP1
  hgvsc: ENST00000584423.1:c.20+14G>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464569
  ensembl transcript: ENST00000475652
  gene symbol: NSRP1
  hgvsc: ENST00000475652.1:c.20+14G>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000378303
  ensembl transcript: ENST00000394826
  gene symbol: NSRP1
  hgvsc: ENST00000394826.4:c.20+14G>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000466640
  ensembl transcript: ENST00000479218
  gene symbol: NSRP1
  hgvsc: ENST00000479218.2:c.20+14G>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000540900
  gene symbol: NSRP1
  hgvsc: ENST00000540900.3:n.321+14G>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+515C>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000583301
  gene symbol: NSRP1
  hgvsc: ENST00000583301.1:n.25+14G>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000577289
  gene symbol: NSRP1
  hgvsc: ENST00000577289.2:n.45+14G>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000462820
  ensembl transcript: ENST00000584154
  gene symbol: NSRP1
  hgvsc: ENST00000584154.1:c.20+14G>C
  variant of: http://identifiers.org/hgnc/25305
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3387
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19586
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25649
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

17-28443896-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28443896
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28443896
    reference: chr 17
allele count: 1
allele frequency: 3.567860710717853e-5
allele num: 28028
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000540900
  gene symbol: NSRP1
  hgvsc: ENST00000540900.3:n.321+15A>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000247026
  ensembl transcript: ENST00000247026
  gene symbol: NSRP1
  hgvsc: ENST00000247026.5:c.20+15A>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000378303
  ensembl transcript: ENST00000394826
  gene symbol: NSRP1
  hgvsc: ENST00000394826.4:c.20+15A>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464237
  ensembl transcript: ENST00000584423
  gene symbol: NSRP1
  hgvsc: ENST00000584423.1:c.20+15A>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000577289
  gene symbol: NSRP1
  hgvsc: ENST00000577289.2:n.45+15A>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+514T>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000466640
  ensembl transcript: ENST00000479218
  gene symbol: NSRP1
  hgvsc: ENST00000479218.2:c.20+15A>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000463722
  ensembl transcript: ENST00000584317
  gene symbol: NSRP1
  hgvsc: ENST00000584317.1:c.20+15A>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464569
  ensembl transcript: ENST00000475652
  gene symbol: NSRP1
  hgvsc: ENST00000475652.1:c.20+15A>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000462820
  ensembl transcript: ENST00000584154
  gene symbol: NSRP1
  hgvsc: ENST00000584154.1:c.20+15A>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000583301
  gene symbol: NSRP1
  hgvsc: ENST00000583301.1:n.25+15A>T
  variant of: http://identifiers.org/hgnc/25305
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20277
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24977
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3339
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

17-28443903-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28443903
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28443903
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 27694
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000247026
  ensembl transcript: ENST00000247026
  gene symbol: NSRP1
  hgvsc: ENST00000247026.5:c.20+22G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000378303
  ensembl transcript: ENST00000394826
  gene symbol: NSRP1
  hgvsc: ENST00000394826.4:c.20+22G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464569
  ensembl transcript: ENST00000475652
  gene symbol: NSRP1
  hgvsc: ENST00000475652.1:c.20+22G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000466640
  ensembl transcript: ENST00000479218
  gene symbol: NSRP1
  hgvsc: ENST00000479218.2:c.20+22G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+507C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000583301
  gene symbol: NSRP1
  hgvsc: ENST00000583301.1:n.25+22G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000462820
  ensembl transcript: ENST00000584154
  gene symbol: NSRP1
  hgvsc: ENST00000584154.1:c.20+22G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000577289
  gene symbol: NSRP1
  hgvsc: ENST00000577289.2:n.45+22G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464237
  ensembl transcript: ENST00000584423
  gene symbol: NSRP1
  hgvsc: ENST00000584423.1:c.20+22G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000463722
  ensembl transcript: ENST00000584317
  gene symbol: NSRP1
  hgvsc: ENST00000584317.1:c.20+22G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000540900
  gene symbol: NSRP1
  hgvsc: ENST00000540900.3:n.321+22G>A
  variant of: http://identifiers.org/hgnc/25305
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3234
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23721
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21543
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3411
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD

17-28443909-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28443909
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28443909
    reference: chr 17
allele count: 1
allele frequency: 3.672150411280846e-5
allele num: 27232
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000540900
  gene symbol: NSRP1
  hgvsc: ENST00000540900.3:n.321+28C>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+501G>A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000463722
  ensembl transcript: ENST00000584317
  gene symbol: NSRP1
  hgvsc: ENST00000584317.1:c.20+28C>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464237
  ensembl transcript: ENST00000584423
  gene symbol: NSRP1
  hgvsc: ENST00000584423.1:c.20+28C>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464569
  ensembl transcript: ENST00000475652
  gene symbol: NSRP1
  hgvsc: ENST00000475652.1:c.20+28C>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000378303
  ensembl transcript: ENST00000394826
  gene symbol: NSRP1
  hgvsc: ENST00000394826.4:c.20+28C>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000583301
  gene symbol: NSRP1
  hgvsc: ENST00000583301.1:n.25+28C>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000462820
  ensembl transcript: ENST00000584154
  gene symbol: NSRP1
  hgvsc: ENST00000584154.1:c.20+28C>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000466640
  ensembl transcript: ENST00000479218
  gene symbol: NSRP1
  hgvsc: ENST00000479218.2:c.20+28C>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000247026
  ensembl transcript: ENST00000247026
  gene symbol: NSRP1
  hgvsc: ENST00000247026.5:c.20+28C>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000577289
  gene symbol: NSRP1
  hgvsc: ENST00000577289.2:n.45+28C>T
  variant of: http://identifiers.org/hgnc/25305
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3063
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23009
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22343
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum

17-28443911-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28443911
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28443911
    reference: chr 17
allele count: 1
allele frequency: 3.691671588895452e-5
allele num: 27088
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000462820
  ensembl transcript: ENST00000584154
  gene symbol: NSRP1
  hgvsc: ENST00000584154.1:c.20+30G>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000577289
  gene symbol: NSRP1
  hgvsc: ENST00000577289.2:n.45+30G>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000463722
  ensembl transcript: ENST00000584317
  gene symbol: NSRP1
  hgvsc: ENST00000584317.1:c.20+30G>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000583301
  gene symbol: NSRP1
  hgvsc: ENST00000583301.1:n.25+30G>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+499C>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000540900
  gene symbol: NSRP1
  hgvsc: ENST00000540900.3:n.321+30G>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000378303
  ensembl transcript: ENST00000394826
  gene symbol: NSRP1
  hgvsc: ENST00000394826.4:c.20+30G>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000247026
  ensembl transcript: ENST00000247026
  gene symbol: NSRP1
  hgvsc: ENST00000247026.5:c.20+30G>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464237
  ensembl transcript: ENST00000584423
  gene symbol: NSRP1
  hgvsc: ENST00000584423.1:c.20+30G>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000466640
  ensembl transcript: ENST00000479218
  gene symbol: NSRP1
  hgvsc: ENST00000479218.2:c.20+30G>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464569
  ensembl transcript: ENST00000475652
  gene symbol: NSRP1
  hgvsc: ENST00000475652.1:c.20+30G>C
  variant of: http://identifiers.org/hgnc/25305
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3003
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22815
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22563
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS

17-28443913-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28443913
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28443913
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 26922
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000466640
  ensembl transcript: ENST00000479218
  gene symbol: NSRP1
  hgvsc: ENST00000479218.2:c.20+32G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464237
  ensembl transcript: ENST00000584423
  gene symbol: NSRP1
  hgvsc: ENST00000584423.1:c.20+32G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+497C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000583301
  gene symbol: NSRP1
  hgvsc: ENST00000583301.1:n.25+32G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000577289
  gene symbol: NSRP1
  hgvsc: ENST00000577289.2:n.45+32G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000463722
  ensembl transcript: ENST00000584317
  gene symbol: NSRP1
  hgvsc: ENST00000584317.1:c.20+32G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000378303
  ensembl transcript: ENST00000394826
  gene symbol: NSRP1
  hgvsc: ENST00000394826.4:c.20+32G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000247026
  ensembl transcript: ENST00000247026
  gene symbol: NSRP1
  hgvsc: ENST00000247026.5:c.20+32G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000540900
  gene symbol: NSRP1
  hgvsc: ENST00000540900.3:n.321+32G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464569
  ensembl transcript: ENST00000475652
  gene symbol: NSRP1
  hgvsc: ENST00000475652.1:c.20+32G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000462820
  ensembl transcript: ENST00000584154
  gene symbol: NSRP1
  hgvsc: ENST00000584154.1:c.20+32G>A
  variant of: http://identifiers.org/hgnc/25305
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2917
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22630
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22811
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3275
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

17-28443914-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28443914
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28443914
    reference: chr 17
allele count: 1
allele frequency: 3.7243947858473e-5
allele num: 26850
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464237
  ensembl transcript: ENST00000584423
  gene symbol: NSRP1
  hgvsc: ENST00000584423.1:c.20+33G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000577289
  gene symbol: NSRP1
  hgvsc: ENST00000577289.2:n.45+33G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000462820
  ensembl transcript: ENST00000584154
  gene symbol: NSRP1
  hgvsc: ENST00000584154.1:c.20+33G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000463722
  ensembl transcript: ENST00000584317
  gene symbol: NSRP1
  hgvsc: ENST00000584317.1:c.20+33G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464569
  ensembl transcript: ENST00000475652
  gene symbol: NSRP1
  hgvsc: ENST00000475652.1:c.20+33G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000466640
  ensembl transcript: ENST00000479218
  gene symbol: NSRP1
  hgvsc: ENST00000479218.2:c.20+33G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000247026
  ensembl transcript: ENST00000247026
  gene symbol: NSRP1
  hgvsc: ENST00000247026.5:c.20+33G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000583301
  gene symbol: NSRP1
  hgvsc: ENST00000583301.1:n.25+33G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000378303
  ensembl transcript: ENST00000394826
  gene symbol: NSRP1
  hgvsc: ENST00000394826.4:c.20+33G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000540900
  gene symbol: NSRP1
  hgvsc: ENST00000540900.3:n.321+33G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+496C>T
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2889
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22908
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22547
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22323
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

17-28443917-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28443917
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28443917
    reference: chr 17
allele count: 1
allele frequency: 3.754317465084847e-5
allele num: 26636
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000466640
  ensembl transcript: ENST00000479218
  gene symbol: NSRP1
  hgvsc: ENST00000479218.2:c.20+36T>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464237
  ensembl transcript: ENST00000584423
  gene symbol: NSRP1
  hgvsc: ENST00000584423.1:c.20+36T>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000577289
  gene symbol: NSRP1
  hgvsc: ENST00000577289.2:n.45+36T>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000378303
  ensembl transcript: ENST00000394826
  gene symbol: NSRP1
  hgvsc: ENST00000394826.4:c.20+36T>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000463722
  ensembl transcript: ENST00000584317
  gene symbol: NSRP1
  hgvsc: ENST00000584317.1:c.20+36T>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464569
  ensembl transcript: ENST00000475652
  gene symbol: NSRP1
  hgvsc: ENST00000475652.1:c.20+36T>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000462820
  ensembl transcript: ENST00000584154
  gene symbol: NSRP1
  hgvsc: ENST00000584154.1:c.20+36T>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000247026
  ensembl transcript: ENST00000247026
  gene symbol: NSRP1
  hgvsc: ENST00000247026.5:c.20+36T>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000583301
  gene symbol: NSRP1
  hgvsc: ENST00000583301.1:n.25+36T>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000540900
  gene symbol: NSRP1
  hgvsc: ENST00000540900.3:n.321+36T>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+493A>G
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22406
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2756
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3540
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ

17-28443920-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28443920
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28443920
    reference: chr 17
allele count: 2
allele frequency: 7.586102260658473e-5
allele num: 26364
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000583301
  gene symbol: NSRP1
  hgvsc: ENST00000583301.1:n.25+39G>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000462820
  ensembl transcript: ENST00000584154
  gene symbol: NSRP1
  hgvsc: ENST00000584154.1:c.20+39G>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+490C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464237
  ensembl transcript: ENST00000584423
  gene symbol: NSRP1
  hgvsc: ENST00000584423.1:c.20+39G>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000577289
  gene symbol: NSRP1
  hgvsc: ENST00000577289.2:n.45+39G>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000247026
  ensembl transcript: ENST00000247026
  gene symbol: NSRP1
  hgvsc: ENST00000247026.5:c.20+39G>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464569
  ensembl transcript: ENST00000475652
  gene symbol: NSRP1
  hgvsc: ENST00000475652.1:c.20+39G>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000466640
  ensembl transcript: ENST00000479218
  gene symbol: NSRP1
  hgvsc: ENST00000479218.2:c.20+39G>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000463722
  ensembl transcript: ENST00000584317
  gene symbol: NSRP1
  hgvsc: ENST00000584317.1:c.20+39G>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000540900
  gene symbol: NSRP1
  hgvsc: ENST00000540900.3:n.321+39G>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000378303
  ensembl transcript: ENST00000394826
  gene symbol: NSRP1
  hgvsc: ENST00000394826.4:c.20+39G>C
  variant of: http://identifiers.org/hgnc/25305
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23149
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2657
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22348
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5642
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/17-28443926-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28443926
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28443926
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 25854
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000540900
  gene symbol: NSRP1
  hgvsc: ENST00000540900.3:n.321+45A>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+484T>G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000462820
  ensembl transcript: ENST00000584154
  gene symbol: NSRP1
  hgvsc: ENST00000584154.1:c.20+45A>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000577289
  gene symbol: NSRP1
  hgvsc: ENST00000577289.2:n.45+45A>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000466640
  ensembl transcript: ENST00000479218
  gene symbol: NSRP1
  hgvsc: ENST00000479218.2:c.20+45A>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000378303
  ensembl transcript: ENST00000394826
  gene symbol: NSRP1
  hgvsc: ENST00000394826.4:c.20+45A>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000247026
  ensembl transcript: ENST00000247026
  gene symbol: NSRP1
  hgvsc: ENST00000247026.5:c.20+45A>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000583301
  gene symbol: NSRP1
  hgvsc: ENST00000583301.1:n.25+45A>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464237
  ensembl transcript: ENST00000584423
  gene symbol: NSRP1
  hgvsc: ENST00000584423.1:c.20+45A>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464569
  ensembl transcript: ENST00000475652
  gene symbol: NSRP1
  hgvsc: ENST00000475652.1:c.20+45A>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000463722
  ensembl transcript: ENST00000584317
  gene symbol: NSRP1
  hgvsc: ENST00000584317.1:c.20+45A>C
  variant of: http://identifiers.org/hgnc/25305
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22559
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23069
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum

17-28443931-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28443931
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28443931
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 25574
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000540900
  gene symbol: NSRP1
  hgvsc: ENST00000540900.3:n.321+50G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000463722
  ensembl transcript: ENST00000584317
  gene symbol: NSRP1
  hgvsc: ENST00000584317.1:c.20+50G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000577289
  gene symbol: NSRP1
  hgvsc: ENST00000577289.2:n.45+50G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464237
  ensembl transcript: ENST00000584423
  gene symbol: NSRP1
  hgvsc: ENST00000584423.1:c.20+50G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000466640
  ensembl transcript: ENST00000479218
  gene symbol: NSRP1
  hgvsc: ENST00000479218.2:c.20+50G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+479C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000583301
  gene symbol: NSRP1
  hgvsc: ENST00000583301.1:n.25+50G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000247026
  ensembl transcript: ENST00000247026
  gene symbol: NSRP1
  hgvsc: ENST00000247026.5:c.20+50G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000462820
  ensembl transcript: ENST00000584154
  gene symbol: NSRP1
  hgvsc: ENST00000584154.1:c.20+50G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464569
  ensembl transcript: ENST00000475652
  gene symbol: NSRP1
  hgvsc: ENST00000475652.1:c.20+50G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000378303
  ensembl transcript: ENST00000394826
  gene symbol: NSRP1
  hgvsc: ENST00000394826.4:c.20+50G>A
  variant of: http://identifiers.org/hgnc/25305
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2294
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23026
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22691
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ

17-28444047-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28444047
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28444047
    reference: chr 17
allele count: 2
allele frequency: 7.666947788085564e-5
allele num: 26086
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000583301
  gene symbol: NSRP1
  hgvsc: ENST00000583301.1:n.25+166A>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464569
  ensembl transcript: ENST00000475652
  gene symbol: NSRP1
  hgvsc: ENST00000475652.1:c.20+166A>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000463722
  ensembl transcript: ENST00000584317
  gene symbol: NSRP1
  hgvsc: ENST00000584317.1:c.20+166A>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+363T>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000577289
  gene symbol: NSRP1
  hgvsc: ENST00000577289.2:n.45+166A>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000465442
  ensembl transcript: ENST00000585881
  gene symbol: NSRP1
  hgvsc: ENST00000585881.1:c.-352A>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464237
  ensembl transcript: ENST00000584423
  gene symbol: NSRP1
  hgvsc: ENST00000584423.1:c.20+166A>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000247026
  ensembl transcript: ENST00000247026
  gene symbol: NSRP1
  hgvsc: ENST00000247026.5:c.20+166A>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000466640
  ensembl transcript: ENST00000479218
  gene symbol: NSRP1
  hgvsc: ENST00000479218.2:c.20+166A>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000462820
  ensembl transcript: ENST00000584154
  gene symbol: NSRP1
  hgvsc: ENST00000584154.1:c.20+166A>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000540900
  gene symbol: NSRP1
  hgvsc: ENST00000540900.3:n.321+166A>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000378303
  ensembl transcript: ENST00000394826
  gene symbol: NSRP1
  hgvsc: ENST00000394826.4:c.20+166A>T
  variant of: http://identifiers.org/hgnc/25305
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25805
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2738
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2253
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19884
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3722
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

17-28444069-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28444069
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28444069
    reference: chr 17
allele count: 5
allele frequency: 1.860119047619048e-4
allele num: 26880
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464569
  ensembl transcript: ENST00000475652
  gene symbol: NSRP1
  hgvsc: ENST00000475652.1:c.20+188G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000462820
  ensembl transcript: ENST00000584154
  gene symbol: NSRP1
  hgvsc: ENST00000584154.1:c.20+188G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+341C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000466640
  ensembl transcript: ENST00000479218
  gene symbol: NSRP1
  hgvsc: ENST00000479218.2:c.20+188G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000463722
  ensembl transcript: ENST00000584317
  gene symbol: NSRP1
  hgvsc: ENST00000584317.1:c.20+188G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000247026
  ensembl transcript: ENST00000247026
  gene symbol: NSRP1
  hgvsc: ENST00000247026.5:c.20+188G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000577289
  gene symbol: NSRP1
  hgvsc: ENST00000577289.2:n.45+188G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000465442
  ensembl transcript: ENST00000585881
  gene symbol: NSRP1
  hgvsc: ENST00000585881.1:c.-330G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464237
  ensembl transcript: ENST00000584423
  gene symbol: NSRP1
  hgvsc: ENST00000584423.1:c.20+188G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000583301
  gene symbol: NSRP1
  hgvsc: ENST00000583301.1:n.25+188G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000378303
  ensembl transcript: ENST00000394826
  gene symbol: NSRP1
  hgvsc: ENST00000394826.4:c.20+188G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000540900
  gene symbol: NSRP1
  hgvsc: ENST00000540900.3:n.321+188G>A
  variant of: http://identifiers.org/hgnc/25305
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2872
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 24955
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3031
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20955
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3785
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD

http://identifiers.org/exac.variant/17-28444085-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28444085
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28444085
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 29268
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464569
  ensembl transcript: ENST00000475652
  gene symbol: NSRP1
  hgvsc: ENST00000475652.1:c.20+204A>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000378303
  ensembl transcript: ENST00000394826
  gene symbol: NSRP1
  hgvsc: ENST00000394826.4:c.20+204A>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000583301
  gene symbol: NSRP1
  hgvsc: ENST00000583301.1:n.25+204A>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464237
  ensembl transcript: ENST00000584423
  gene symbol: NSRP1
  hgvsc: ENST00000584423.1:c.20+204A>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+325T>G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000462820
  ensembl transcript: ENST00000584154
  gene symbol: NSRP1
  hgvsc: ENST00000584154.1:c.20+204A>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000466640
  ensembl transcript: ENST00000479218
  gene symbol: NSRP1
  hgvsc: ENST00000479218.2:c.20+204A>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000465442
  ensembl transcript: ENST00000585881
  gene symbol: NSRP1
  hgvsc: ENST00000585881.1:c.-314A>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000247026
  ensembl transcript: ENST00000247026
  gene symbol: NSRP1
  hgvsc: ENST00000247026.5:c.20+204A>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000577289
  gene symbol: NSRP1
  hgvsc: ENST00000577289.2:n.45+204A>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000540900
  gene symbol: NSRP1
  hgvsc: ENST00000540900.3:n.321+204A>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000463722
  ensembl transcript: ENST00000584317
  gene symbol: NSRP1
  hgvsc: ENST00000584317.1:c.20+204A>C
  variant of: http://identifiers.org/hgnc/25305
canonical: false
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14029
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2832
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3838
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31279
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

17-28444089-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28444089
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28444089
    reference: chr 17
allele count: 2
allele frequency: 6.698821007502679e-5
allele num: 29856
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000577289
  gene symbol: NSRP1
  hgvsc: ENST00000577289.2:n.45+208G>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000583301
  gene symbol: NSRP1
  hgvsc: ENST00000583301.1:n.25+208G>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000247026
  ensembl transcript: ENST00000247026
  gene symbol: NSRP1
  hgvsc: ENST00000247026.5:c.20+208G>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000465442
  ensembl transcript: ENST00000585881
  gene symbol: NSRP1
  hgvsc: ENST00000585881.1:c.-310G>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000540900
  gene symbol: NSRP1
  hgvsc: ENST00000540900.3:n.321+208G>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+321C>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464237
  ensembl transcript: ENST00000584423
  gene symbol: NSRP1
  hgvsc: ENST00000584423.1:c.20+208G>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000462820
  ensembl transcript: ENST00000584154
  gene symbol: NSRP1
  hgvsc: ENST00000584154.1:c.20+208G>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000378303
  ensembl transcript: ENST00000394826
  gene symbol: NSRP1
  hgvsc: ENST00000394826.4:c.20+208G>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000466640
  ensembl transcript: ENST00000479218
  gene symbol: NSRP1
  hgvsc: ENST00000479218.2:c.20+208G>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000463722
  ensembl transcript: ENST00000584317
  gene symbol: NSRP1
  hgvsc: ENST00000584317.1:c.20+208G>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464569
  ensembl transcript: ENST00000475652
  gene symbol: NSRP1
  hgvsc: ENST00000475652.1:c.20+208G>T
  variant of: http://identifiers.org/hgnc/25305
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4606
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12934
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2795
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32118
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3876
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

17-28444102-G-GCGT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28444102
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28444105
    reference: chr 17
allele count: 1
allele frequency: 3.183294072706436e-5
allele num: 31414
alternate allele: GCGT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000577289
  gene symbol: NSRP1
  hgvsc: ENST00000577289.2:n.45+221_45+222insCGT
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000465442
  ensembl transcript: ENST00000585881
  gene symbol: NSRP1
  hgvsc: ENST00000585881.1:c.-297_-296insCGT
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000462820
  ensembl transcript: ENST00000584154
  gene symbol: NSRP1
  hgvsc: ENST00000584154.1:c.20+221_20+222insCGT
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000378303
  ensembl transcript: ENST00000394826
  gene symbol: NSRP1
  hgvsc: ENST00000394826.4:c.20+221_20+222insCGT
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000199071
  ensembl transcript: ENST00000362201
  gene symbol: MIR423
  hgvsc: ENST00000362201.2:n.6_7insCGT
  variant of: http://identifiers.org/hgnc/31880
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000583301
  gene symbol: NSRP1
  hgvsc: ENST00000583301.1:n.25+221_25+222insCGT
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266919
  ensembl transcript: ENST00000586878
  gene symbol: MIR3184
  hgvsc: ENST00000586878.1:n.88_89insACG
  variant of: http://identifiers.org/hgnc/38182
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464237
  ensembl transcript: ENST00000584423
  gene symbol: NSRP1
  hgvsc: ENST00000584423.1:c.20+221_20+222insCGT
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000463722
  ensembl transcript: ENST00000584317
  gene symbol: NSRP1
  hgvsc: ENST00000584317.1:c.20+221_20+222insCGT
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464569
  ensembl transcript: ENST00000475652
  gene symbol: NSRP1
  hgvsc: ENST00000475652.1:c.21-218_21-217insCGT
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000247026
  ensembl transcript: ENST00000247026
  gene symbol: NSRP1
  hgvsc: ENST00000247026.5:c.20+221_20+222insCGT
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+307_106+308insACG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000466640
  ensembl transcript: ENST00000479218
  gene symbol: NSRP1
  hgvsc: ENST00000479218.2:c.21-218_21-217insCGT
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000540900
  gene symbol: NSRP1
  hgvsc: ENST00000540900.3:n.321+221_321+222insCGT
  variant of: http://identifiers.org/hgnc/25305
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3023
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3924
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5038
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11273
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33072
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/17-28444104-A-AAC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28444104
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28444106
    reference: chr 17
allele count: 1
allele frequency: 3.163355687713527e-5
allele num: 31612
alternate allele: AAC
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266919
  ensembl transcript: ENST00000586878
  gene symbol: MIR3184
  hgvsc: ENST00000586878.1:n.86_87insGT
  variant of: http://identifiers.org/hgnc/38182
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464237
  ensembl transcript: ENST00000584423
  gene symbol: NSRP1
  hgvsc: ENST00000584423.1:c.20+224_20+225insCA
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000247026
  ensembl transcript: ENST00000247026
  gene symbol: NSRP1
  hgvsc: ENST00000247026.5:c.20+224_20+225insCA
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000378303
  ensembl transcript: ENST00000394826
  gene symbol: NSRP1
  hgvsc: ENST00000394826.4:c.20+224_20+225insCA
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000462820
  ensembl transcript: ENST00000584154
  gene symbol: NSRP1
  hgvsc: ENST00000584154.1:c.20+224_20+225insCA
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000199071
  ensembl transcript: ENST00000362201
  gene symbol: MIR423
  hgvsc: ENST00000362201.2:n.9_10insCA
  variant of: http://identifiers.org/hgnc/31880
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000466640
  ensembl transcript: ENST00000479218
  gene symbol: NSRP1
  hgvsc: ENST00000479218.2:c.21-215_21-214insCA
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000540900
  gene symbol: NSRP1
  hgvsc: ENST00000540900.3:n.321+224_321+225insCA
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000583301
  gene symbol: NSRP1
  hgvsc: ENST00000583301.1:n.25+224_25+225insCA
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000465442
  ensembl transcript: ENST00000585881
  gene symbol: NSRP1
  hgvsc: ENST00000585881.1:c.-294_-293insCA
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+305_106+306insGT
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464569
  ensembl transcript: ENST00000475652
  gene symbol: NSRP1
  hgvsc: ENST00000475652.1:c.21-215_21-214insCA
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000577289
  gene symbol: NSRP1
  hgvsc: ENST00000577289.2:n.45+224_45+225insCA
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000463722
  ensembl transcript: ENST00000584317
  gene symbol: NSRP1
  hgvsc: ENST00000584317.1:c.20+224_20+225insCA
  variant of: http://identifiers.org/hgnc/25305
canonical: false
consequence: 5' UTR
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 33125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3915
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3084
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5028
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11180
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-28444104-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28444104
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28444104
    reference: chr 17
allele count: 1
allele frequency: 3.163355687713527e-5
allele num: 31612
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464237
  ensembl transcript: ENST00000584423
  gene symbol: NSRP1
  hgvsc: ENST00000584423.1:c.20+223A>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000577289
  gene symbol: NSRP1
  hgvsc: ENST00000577289.2:n.45+223A>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000465442
  ensembl transcript: ENST00000585881
  gene symbol: NSRP1
  hgvsc: ENST00000585881.1:c.-295A>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000583301
  gene symbol: NSRP1
  hgvsc: ENST00000583301.1:n.25+223A>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000463722
  ensembl transcript: ENST00000584317
  gene symbol: NSRP1
  hgvsc: ENST00000584317.1:c.20+223A>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464569
  ensembl transcript: ENST00000475652
  gene symbol: NSRP1
  hgvsc: ENST00000475652.1:c.21-216A>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266919
  ensembl transcript: ENST00000586878
  gene symbol: MIR3184
  hgvsc: ENST00000586878.1:n.87T>A
  variant of: http://identifiers.org/hgnc/38182
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000199071
  ensembl transcript: ENST00000362201
  gene symbol: MIR423
  hgvsc: ENST00000362201.2:n.8A>T
  variant of: http://identifiers.org/hgnc/31880
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+306T>A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000462820
  ensembl transcript: ENST00000584154
  gene symbol: NSRP1
  hgvsc: ENST00000584154.1:c.20+223A>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000540900
  gene symbol: NSRP1
  hgvsc: ENST00000540900.3:n.321+223A>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000378303
  ensembl transcript: ENST00000394826
  gene symbol: NSRP1
  hgvsc: ENST00000394826.4:c.20+223A>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000247026
  ensembl transcript: ENST00000247026
  gene symbol: NSRP1
  hgvsc: ENST00000247026.5:c.20+223A>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000466640
  ensembl transcript: ENST00000479218
  gene symbol: NSRP1
  hgvsc: ENST00000479218.2:c.21-216A>T
  variant of: http://identifiers.org/hgnc/25305
canonical: false
consequence: 5' UTR
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3084
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11180
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5028
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

17-28444106-G-GTA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28444106
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28444108
    reference: chr 17
allele count: 1
allele frequency: 3.152982721654685e-5
allele num: 31716
alternate allele: GTA
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+303_106+304insTA
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000378303
  ensembl transcript: ENST00000394826
  gene symbol: NSRP1
  hgvsc: ENST00000394826.4:c.20+226_20+227insAT
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464569
  ensembl transcript: ENST00000475652
  gene symbol: NSRP1
  hgvsc: ENST00000475652.1:c.21-213_21-212insAT
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000583301
  gene symbol: NSRP1
  hgvsc: ENST00000583301.1:n.25+226_25+227insAT
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464237
  ensembl transcript: ENST00000584423
  gene symbol: NSRP1
  hgvsc: ENST00000584423.1:c.20+226_20+227insAT
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000462820
  ensembl transcript: ENST00000584154
  gene symbol: NSRP1
  hgvsc: ENST00000584154.1:c.20+226_20+227insAT
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000540900
  gene symbol: NSRP1
  hgvsc: ENST00000540900.3:n.321+226_321+227insAT
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000466640
  ensembl transcript: ENST00000479218
  gene symbol: NSRP1
  hgvsc: ENST00000479218.2:c.21-213_21-212insAT
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000465442
  ensembl transcript: ENST00000585881
  gene symbol: NSRP1
  hgvsc: ENST00000585881.1:c.-292_-291insAT
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000199071
  ensembl transcript: ENST00000362201
  gene symbol: MIR423
  hgvsc: ENST00000362201.2:n.11_12insAT
  variant of: http://identifiers.org/hgnc/31880
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000577289
  gene symbol: NSRP1
  hgvsc: ENST00000577289.2:n.45+226_45+227insAT
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000463722
  ensembl transcript: ENST00000584317
  gene symbol: NSRP1
  hgvsc: ENST00000584317.1:c.20+226_20+227insAT
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000247026
  ensembl transcript: ENST00000247026
  gene symbol: NSRP1
  hgvsc: ENST00000247026.5:c.20+226_20+227insAT
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266919
  ensembl transcript: ENST00000586878
  gene symbol: MIR3184
  hgvsc: ENST00000586878.1:n.84_85insTA
  variant of: http://identifiers.org/hgnc/38182
canonical: false
consequence: 5' UTR
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33025
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3190
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4968
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3903
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11220
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum

17-28444108-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28444108
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28444108
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 31838
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464569
  ensembl transcript: ENST00000475652
  gene symbol: NSRP1
  hgvsc: ENST00000475652.1:c.21-212T>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000378303
  ensembl transcript: ENST00000394826
  gene symbol: NSRP1
  hgvsc: ENST00000394826.4:c.20+227T>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+302A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000540900
  gene symbol: NSRP1
  hgvsc: ENST00000540900.3:n.321+227T>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000583301
  gene symbol: NSRP1
  hgvsc: ENST00000583301.1:n.25+227T>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000247026
  ensembl transcript: ENST00000247026
  gene symbol: NSRP1
  hgvsc: ENST00000247026.5:c.20+227T>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000463722
  ensembl transcript: ENST00000584317
  gene symbol: NSRP1
  hgvsc: ENST00000584317.1:c.20+227T>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000199071
  ensembl transcript: ENST00000362201
  gene symbol: MIR423
  hgvsc: ENST00000362201.2:n.12T>C
  variant of: http://identifiers.org/hgnc/31880
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000465442
  ensembl transcript: ENST00000585881
  gene symbol: NSRP1
  hgvsc: ENST00000585881.1:c.-291T>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000466640
  ensembl transcript: ENST00000479218
  gene symbol: NSRP1
  hgvsc: ENST00000479218.2:c.21-212T>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266919
  ensembl transcript: ENST00000586878
  gene symbol: MIR3184
  hgvsc: ENST00000586878.1:n.83A>G
  variant of: http://identifiers.org/hgnc/38182
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000577289
  gene symbol: NSRP1
  hgvsc: ENST00000577289.2:n.45+227T>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000462820
  ensembl transcript: ENST00000584154
  gene symbol: NSRP1
  hgvsc: ENST00000584154.1:c.20+227T>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464237
  ensembl transcript: ENST00000584423
  gene symbol: NSRP1
  hgvsc: ENST00000584423.1:c.20+227T>C
  variant of: http://identifiers.org/hgnc/25305
canonical: false
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3908
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3258
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33051
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11115
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

17-28444109-A-ATTAATAATTTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28444109
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28444120
    reference: chr 17
allele count: 1
allele frequency: 3.139126067302863e-5
allele num: 31856
alternate allele: ATTAATAATTTT
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000463722
  ensembl transcript: ENST00000584317
  gene symbol: NSRP1
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000462820
  ensembl transcript: ENST00000584154
  gene symbol: NSRP1
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464237
  ensembl transcript: ENST00000584423
  gene symbol: NSRP1
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000583301
  gene symbol: NSRP1
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000199071
  ensembl transcript: ENST00000362201
  gene symbol: MIR423
  hgvsc: ENST00000362201.2:n.13_14insTTAATAATTTT
  variant of: http://identifiers.org/hgnc/31880
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464569
  ensembl transcript: ENST00000475652
  gene symbol: NSRP1
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000465442
  ensembl transcript: ENST00000585881
  gene symbol: NSRP1
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000577289
  gene symbol: NSRP1
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000378303
  ensembl transcript: ENST00000394826
  gene symbol: NSRP1
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266919
  ensembl transcript: ENST00000586878
  gene symbol: MIR3184
  hgvsc: ENST00000586878.1:n.81_82insAAAATTATTAA
  variant of: http://identifiers.org/hgnc/38182
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000466640
  ensembl transcript: ENST00000479218
  gene symbol: NSRP1
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000540900
  gene symbol: NSRP1
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000247026
  ensembl transcript: ENST00000247026
  gene symbol: NSRP1
  variant of: http://identifiers.org/hgnc/25305
canonical: false
consequence: 5' UTR
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3912
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33000
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4928
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11133
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3315
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: BaseQRankSum

17-28444118-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28444118
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28444118
    reference: chr 17
allele count: 1
allele frequency: 3.107520198881293e-5
allele num: 32180
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: mature_miRNA_variant
  ensembl gene: ENSG00000199071
  ensembl transcript: ENST00000362201
  gene symbol: MIR423
  hgvsc: ENST00000362201.2:n.22G>A
  variant of: http://identifiers.org/hgnc/31880
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266919
  ensembl transcript: ENST00000586878
  gene symbol: MIR3184
  hgvsc: ENST00000586878.1:n.73C>T
  variant of: http://identifiers.org/hgnc/38182
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000540900
  gene symbol: NSRP1
  hgvsc: ENST00000540900.3:n.321+237G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000378303
  ensembl transcript: ENST00000394826
  gene symbol: NSRP1
  hgvsc: ENST00000394826.4:c.20+237G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000583301
  gene symbol: NSRP1
  hgvsc: ENST00000583301.1:n.25+237G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000463722
  ensembl transcript: ENST00000584317
  gene symbol: NSRP1
  hgvsc: ENST00000584317.1:c.20+237G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+292C>T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000465442
  ensembl transcript: ENST00000585881
  gene symbol: NSRP1
  hgvsc: ENST00000585881.1:c.-281G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000462820
  ensembl transcript: ENST00000584154
  gene symbol: NSRP1
  hgvsc: ENST00000584154.1:c.20+237G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000247026
  ensembl transcript: ENST00000247026
  gene symbol: NSRP1
  hgvsc: ENST00000247026.5:c.20+237G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464237
  ensembl transcript: ENST00000584423
  gene symbol: NSRP1
  hgvsc: ENST00000584423.1:c.20+237G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000577289
  gene symbol: NSRP1
  hgvsc: ENST00000577289.2:n.45+237G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464569
  ensembl transcript: ENST00000475652
  gene symbol: NSRP1
  hgvsc: ENST00000475652.1:c.21-202G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000466640
  ensembl transcript: ENST00000479218
  gene symbol: NSRP1
  hgvsc: ENST00000479218.2:c.21-202G>A
  variant of: http://identifiers.org/hgnc/25305
canonical: true
consequence: mature miRNA
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4422
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3836
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11845
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4070
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31948
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

17-28444126-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28444126
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28444126
    reference: chr 17
allele count: 1
allele frequency: 3.105975897627034e-5
allele num: 32196
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000583301
  gene symbol: NSRP1
  hgvsc: ENST00000583301.1:n.25+245G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000465442
  ensembl transcript: ENST00000585881
  gene symbol: NSRP1
  hgvsc: ENST00000585881.1:c.-273G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+284C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000577289
  gene symbol: NSRP1
  hgvsc: ENST00000577289.2:n.45+245G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000540900
  gene symbol: NSRP1
  hgvsc: ENST00000540900.3:n.321+245G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000462820
  ensembl transcript: ENST00000584154
  gene symbol: NSRP1
  hgvsc: ENST00000584154.1:c.20+245G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000247026
  ensembl transcript: ENST00000247026
  gene symbol: NSRP1
  hgvsc: ENST00000247026.5:c.20+245G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266919
  ensembl transcript: ENST00000586878
  gene symbol: MIR3184
  hgvsc: ENST00000586878.1:n.65C>T
  variant of: http://identifiers.org/hgnc/38182
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000466640
  ensembl transcript: ENST00000479218
  gene symbol: NSRP1
  hgvsc: ENST00000479218.2:c.21-194G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: mature_miRNA_variant
  ensembl gene: ENSG00000199071
  ensembl transcript: ENST00000362201
  gene symbol: MIR423
  hgvsc: ENST00000362201.2:n.30G>A
  variant of: http://identifiers.org/hgnc/31880
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000378303
  ensembl transcript: ENST00000394826
  gene symbol: NSRP1
  hgvsc: ENST00000394826.4:c.20+245G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000463722
  ensembl transcript: ENST00000584317
  gene symbol: NSRP1
  hgvsc: ENST00000584317.1:c.20+245G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464237
  ensembl transcript: ENST00000584423
  gene symbol: NSRP1
  hgvsc: ENST00000584423.1:c.20+245G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464569
  ensembl transcript: ENST00000475652
  gene symbol: NSRP1
  hgvsc: ENST00000475652.1:c.21-194G>A
  variant of: http://identifiers.org/hgnc/25305
canonical: true
consequence: mature miRNA
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30796
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12847
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4561
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum

17-28444139-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28444139
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28444139
    reference: chr 17
allele count: 2
allele frequency: 6.404098623118796e-5
allele num: 31230
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000199071
  ensembl transcript: ENST00000362201
  gene symbol: MIR423
  hgvsc: ENST00000362201.2:n.43A>G
  variant of: http://identifiers.org/hgnc/31880
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266919
  ensembl transcript: ENST00000586878
  gene symbol: MIR3184
  hgvsc: ENST00000586878.1:n.52T>C
  variant of: http://identifiers.org/hgnc/38182
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+271T>C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000465442
  ensembl transcript: ENST00000585881
  gene symbol: NSRP1
  hgvsc: ENST00000585881.1:c.-260A>G
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464237
  ensembl transcript: ENST00000584423
  gene symbol: NSRP1
  hgvsc: ENST00000584423.1:c.20+258A>G
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000577289
  gene symbol: NSRP1
  hgvsc: ENST00000577289.2:n.45+258A>G
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000463722
  ensembl transcript: ENST00000584317
  gene symbol: NSRP1
  hgvsc: ENST00000584317.1:c.20+258A>G
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464569
  ensembl transcript: ENST00000475652
  gene symbol: NSRP1
  hgvsc: ENST00000475652.1:c.21-181A>G
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000462820
  ensembl transcript: ENST00000584154
  gene symbol: NSRP1
  hgvsc: ENST00000584154.1:c.20+258A>G
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000540900
  gene symbol: NSRP1
  hgvsc: ENST00000540900.3:n.321+258A>G
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000466640
  ensembl transcript: ENST00000479218
  gene symbol: NSRP1
  hgvsc: ENST00000479218.2:c.21-181A>G
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000378303
  ensembl transcript: ENST00000394826
  gene symbol: NSRP1
  hgvsc: ENST00000394826.4:c.20+258A>G
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000247026
  ensembl transcript: ENST00000247026
  gene symbol: NSRP1
  hgvsc: ENST00000247026.5:c.20+258A>G
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000583301
  gene symbol: NSRP1
  hgvsc: ENST00000583301.1:n.25+258A>G
  variant of: http://identifiers.org/hgnc/25305
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16394
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3288
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5216
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27219
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

17-28444147-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28444147
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28444147
    reference: chr 17
allele count: 1
allele frequency: 3.311696913498477e-5
allele num: 30196
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464237
  ensembl transcript: ENST00000584423
  gene symbol: NSRP1
  hgvsc: ENST00000584423.1:c.20+266A>G
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000577289
  gene symbol: NSRP1
  hgvsc: ENST00000577289.2:n.45+266A>G
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000465442
  ensembl transcript: ENST00000585881
  gene symbol: NSRP1
  hgvsc: ENST00000585881.1:c.-252A>G
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266919
  ensembl transcript: ENST00000586878
  gene symbol: MIR3184
  hgvsc: ENST00000586878.1:n.44T>C
  variant of: http://identifiers.org/hgnc/38182
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+263T>C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000463722
  ensembl transcript: ENST00000584317
  gene symbol: NSRP1
  hgvsc: ENST00000584317.1:c.20+266A>G
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000247026
  ensembl transcript: ENST00000247026
  gene symbol: NSRP1
  hgvsc: ENST00000247026.5:c.20+266A>G
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000583301
  gene symbol: NSRP1
  hgvsc: ENST00000583301.1:n.25+266A>G
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000199071
  ensembl transcript: ENST00000362201
  gene symbol: MIR423
  hgvsc: ENST00000362201.2:n.51A>G
  variant of: http://identifiers.org/hgnc/31880
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000378303
  ensembl transcript: ENST00000394826
  gene symbol: NSRP1
  hgvsc: ENST00000394826.4:c.20+266A>G
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000540900
  gene symbol: NSRP1
  hgvsc: ENST00000540900.3:n.321+266A>G
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000462820
  ensembl transcript: ENST00000584154
  gene symbol: NSRP1
  hgvsc: ENST00000584154.1:c.20+266A>G
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464569
  ensembl transcript: ENST00000475652
  gene symbol: NSRP1
  hgvsc: ENST00000475652.1:c.21-173A>G
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000466640
  ensembl transcript: ENST00000479218
  gene symbol: NSRP1
  hgvsc: ENST00000479218.2:c.21-173A>G
  variant of: http://identifiers.org/hgnc/25305
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3052
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24686
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18923
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5263
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2915
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

17-28444157-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28444157
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28444157
    reference: chr 17
allele count: 1
allele frequency: 3.5785857429144e-5
allele num: 27944
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464569
  ensembl transcript: ENST00000475652
  gene symbol: NSRP1
  hgvsc: ENST00000475652.1:c.21-163C>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000463722
  ensembl transcript: ENST00000584317
  gene symbol: NSRP1
  hgvsc: ENST00000584317.1:c.20+276C>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000199071
  ensembl transcript: ENST00000362201
  gene symbol: MIR423
  hgvsc: ENST00000362201.2:n.61C>T
  variant of: http://identifiers.org/hgnc/31880
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000577289
  gene symbol: NSRP1
  hgvsc: ENST00000577289.2:n.45+276C>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000462820
  ensembl transcript: ENST00000584154
  gene symbol: NSRP1
  hgvsc: ENST00000584154.1:c.20+276C>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266919
  ensembl transcript: ENST00000586878
  gene symbol: MIR3184
  hgvsc: ENST00000586878.1:n.34G>A
  variant of: http://identifiers.org/hgnc/38182
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000583301
  gene symbol: NSRP1
  hgvsc: ENST00000583301.1:n.25+276C>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464237
  ensembl transcript: ENST00000584423
  gene symbol: NSRP1
  hgvsc: ENST00000584423.1:c.20+276C>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000465442
  ensembl transcript: ENST00000585881
  gene symbol: NSRP1
  hgvsc: ENST00000585881.1:c.-242C>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000540900
  gene symbol: NSRP1
  hgvsc: ENST00000540900.3:n.321+276C>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000466640
  ensembl transcript: ENST00000479218
  gene symbol: NSRP1
  hgvsc: ENST00000479218.2:c.21-163C>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000378303
  ensembl transcript: ENST00000394826
  gene symbol: NSRP1
  hgvsc: ENST00000394826.4:c.20+276C>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+253G>A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000247026
  ensembl transcript: ENST00000247026
  gene symbol: NSRP1
  hgvsc: ENST00000247026.5:c.20+276C>T
  variant of: http://identifiers.org/hgnc/25305
canonical: false
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4673
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2373
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2787
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22479
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD

17-28444164-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28444164
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28444164
    reference: chr 17
allele count: 1
allele frequency: 3.663272034581288e-5
allele num: 27298
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000199071
  ensembl transcript: ENST00000362201
  gene symbol: MIR423
  hgvsc: ENST00000362201.2:n.68C>T
  variant of: http://identifiers.org/hgnc/31880
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000378303
  ensembl transcript: ENST00000394826
  gene symbol: NSRP1
  hgvsc: ENST00000394826.4:c.20+283C>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000247026
  ensembl transcript: ENST00000247026
  gene symbol: NSRP1
  hgvsc: ENST00000247026.5:c.20+283C>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266919
  ensembl transcript: ENST00000586878
  gene symbol: MIR3184
  hgvsc: ENST00000586878.1:n.27G>A
  variant of: http://identifiers.org/hgnc/38182
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000465442
  ensembl transcript: ENST00000585881
  gene symbol: NSRP1
  hgvsc: ENST00000585881.1:c.-235C>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464237
  ensembl transcript: ENST00000584423
  gene symbol: NSRP1
  hgvsc: ENST00000584423.1:c.20+283C>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000583301
  gene symbol: NSRP1
  hgvsc: ENST00000583301.1:n.25+283C>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464569
  ensembl transcript: ENST00000475652
  gene symbol: NSRP1
  hgvsc: ENST00000475652.1:c.21-156C>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000466640
  ensembl transcript: ENST00000479218
  gene symbol: NSRP1
  hgvsc: ENST00000479218.2:c.21-156C>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+246G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000577289
  gene symbol: NSRP1
  hgvsc: ENST00000577289.2:n.45+283C>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000462820
  ensembl transcript: ENST00000584154
  gene symbol: NSRP1
  hgvsc: ENST00000584154.1:c.20+283C>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000540900
  gene symbol: NSRP1
  hgvsc: ENST00000540900.3:n.321+283C>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000463722
  ensembl transcript: ENST00000584317
  gene symbol: NSRP1
  hgvsc: ENST00000584317.1:c.20+283C>T
  variant of: http://identifiers.org/hgnc/25305
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2117
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21770
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21699
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum

http://identifiers.org/exac.variant/17-28444166-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28444166
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28444166
    reference: chr 17
allele count: 1
allele frequency: 3.723285427060839e-5
allele num: 26858
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000540900
  gene symbol: NSRP1
  hgvsc: ENST00000540900.3:n.321+285C>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266919
  ensembl transcript: ENST00000586878
  gene symbol: MIR3184
  hgvsc: ENST00000586878.1:n.25G>T
  variant of: http://identifiers.org/hgnc/38182
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000465442
  ensembl transcript: ENST00000585881
  gene symbol: NSRP1
  hgvsc: ENST00000585881.1:c.-233C>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464237
  ensembl transcript: ENST00000584423
  gene symbol: NSRP1
  hgvsc: ENST00000584423.1:c.20+285C>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000583301
  gene symbol: NSRP1
  hgvsc: ENST00000583301.1:n.25+285C>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000463722
  ensembl transcript: ENST00000584317
  gene symbol: NSRP1
  hgvsc: ENST00000584317.1:c.20+285C>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000199071
  ensembl transcript: ENST00000362201
  gene symbol: MIR423
  hgvsc: ENST00000362201.2:n.70C>A
  variant of: http://identifiers.org/hgnc/31880
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000378303
  ensembl transcript: ENST00000394826
  gene symbol: NSRP1
  hgvsc: ENST00000394826.4:c.20+285C>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+244G>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000577289
  gene symbol: NSRP1
  hgvsc: ENST00000577289.2:n.45+285C>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000466640
  ensembl transcript: ENST00000479218
  gene symbol: NSRP1
  hgvsc: ENST00000479218.2:c.21-154C>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464569
  ensembl transcript: ENST00000475652
  gene symbol: NSRP1
  hgvsc: ENST00000475652.1:c.21-154C>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000462820
  ensembl transcript: ENST00000584154
  gene symbol: NSRP1
  hgvsc: ENST00000584154.1:c.20+285C>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000247026
  ensembl transcript: ENST00000247026
  gene symbol: NSRP1
  hgvsc: ENST00000247026.5:c.20+285C>A
  variant of: http://identifiers.org/hgnc/25305
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4334
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21755
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2559
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP

17-28444176-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28444176
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28444176
    reference: chr 17
allele count: 1
allele frequency: 3.807493146512336e-5
allele num: 26264
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464237
  ensembl transcript: ENST00000584423
  gene symbol: NSRP1
  hgvsc: ENST00000584423.1:c.20+295C>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000462820
  ensembl transcript: ENST00000584154
  gene symbol: NSRP1
  hgvsc: ENST00000584154.1:c.20+295C>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+234G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000577289
  gene symbol: NSRP1
  hgvsc: ENST00000577289.2:n.45+295C>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000463722
  ensembl transcript: ENST00000584317
  gene symbol: NSRP1
  hgvsc: ENST00000584317.1:c.20+295C>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000465442
  ensembl transcript: ENST00000585881
  gene symbol: NSRP1
  hgvsc: ENST00000585881.1:c.-223C>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000199071
  ensembl transcript: ENST00000362201
  gene symbol: MIR423
  hgvsc: ENST00000362201.2:n.80C>T
  variant of: http://identifiers.org/hgnc/31880
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000466640
  ensembl transcript: ENST00000479218
  gene symbol: NSRP1
  hgvsc: ENST00000479218.2:c.21-144C>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000540900
  gene symbol: NSRP1
  hgvsc: ENST00000540900.3:n.321+295C>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000583301
  gene symbol: NSRP1
  hgvsc: ENST00000583301.1:n.25+295C>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000247026
  ensembl transcript: ENST00000247026
  gene symbol: NSRP1
  hgvsc: ENST00000247026.5:c.20+295C>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464569
  ensembl transcript: ENST00000475652
  gene symbol: NSRP1
  hgvsc: ENST00000475652.1:c.21-144C>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000467446
  gene symbol: NSRP1
  hgvsc: ENST00000467446.2:n.5C>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000378303
  ensembl transcript: ENST00000394826
  gene symbol: NSRP1
  hgvsc: ENST00000394826.4:c.20+295C>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266919
  ensembl transcript: ENST00000586878
  gene symbol: MIR3184
  hgvsc: ENST00000586878.1:n.15G>A
  variant of: http://identifiers.org/hgnc/38182
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21179
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21363
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2655
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4261
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

17-28444178-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28444178
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28444178
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 26388
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000466640
  ensembl transcript: ENST00000479218
  gene symbol: NSRP1
  hgvsc: ENST00000479218.2:c.21-142T>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000540900
  gene symbol: NSRP1
  hgvsc: ENST00000540900.3:n.321+297T>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000467446
  gene symbol: NSRP1
  hgvsc: ENST00000467446.2:n.7T>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000583301
  gene symbol: NSRP1
  hgvsc: ENST00000583301.1:n.25+297T>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000463722
  ensembl transcript: ENST00000584317
  gene symbol: NSRP1
  hgvsc: ENST00000584317.1:c.20+297T>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000199071
  ensembl transcript: ENST00000362201
  gene symbol: MIR423
  hgvsc: ENST00000362201.2:n.82T>A
  variant of: http://identifiers.org/hgnc/31880
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000378303
  ensembl transcript: ENST00000394826
  gene symbol: NSRP1
  hgvsc: ENST00000394826.4:c.20+297T>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464569
  ensembl transcript: ENST00000475652
  gene symbol: NSRP1
  hgvsc: ENST00000475652.1:c.21-142T>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000465442
  ensembl transcript: ENST00000585881
  gene symbol: NSRP1
  hgvsc: ENST00000585881.1:c.-221T>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000247026
  ensembl transcript: ENST00000247026
  gene symbol: NSRP1
  hgvsc: ENST00000247026.5:c.20+297T>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+232A>T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000462820
  ensembl transcript: ENST00000584154
  gene symbol: NSRP1
  hgvsc: ENST00000584154.1:c.20+297T>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000577289
  gene symbol: NSRP1
  hgvsc: ENST00000577289.2:n.45+297T>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464237
  ensembl transcript: ENST00000584423
  gene symbol: NSRP1
  hgvsc: ENST00000584423.1:c.20+297T>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266919
  ensembl transcript: ENST00000586878
  gene symbol: MIR3184
  hgvsc: ENST00000586878.1:n.13A>T
  variant of: http://identifiers.org/hgnc/38182
canonical: false
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 21296
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2653
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4293
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/17-28444183-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28444183
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28444183
    reference: chr 17
allele count: 15979
allele frequency: 5.283361989154873e-1
allele num: 30244
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464237
  ensembl transcript: ENST00000584423
  gene symbol: NSRP1
  hgvsc: ENST00000584423.1:c.20+302A>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266919
  ensembl transcript: ENST00000586878
  gene symbol: MIR3184
  hgvsc: ENST00000586878.1:n.8T>G
  variant of: http://identifiers.org/hgnc/38182
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000463722
  ensembl transcript: ENST00000584317
  gene symbol: NSRP1
  hgvsc: ENST00000584317.1:c.20+302A>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000583301
  gene symbol: NSRP1
  hgvsc: ENST00000583301.1:n.25+302A>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+227T>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000540900
  gene symbol: NSRP1
  hgvsc: ENST00000540900.3:n.321+302A>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000465442
  ensembl transcript: ENST00000585881
  gene symbol: NSRP1
  hgvsc: ENST00000585881.1:c.-216A>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000199071
  ensembl transcript: ENST00000362201
  gene symbol: MIR423
  hgvsc: ENST00000362201.2:n.87A>C
  variant of: http://identifiers.org/hgnc/31880
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000247026
  ensembl transcript: ENST00000247026
  gene symbol: NSRP1
  hgvsc: ENST00000247026.5:c.20+302A>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464569
  ensembl transcript: ENST00000475652
  gene symbol: NSRP1
  hgvsc: ENST00000475652.1:c.21-137A>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000378303
  ensembl transcript: ENST00000394826
  gene symbol: NSRP1
  hgvsc: ENST00000394826.4:c.20+302A>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000462820
  ensembl transcript: ENST00000584154
  gene symbol: NSRP1
  hgvsc: ENST00000584154.1:c.20+302A>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000467446
  gene symbol: NSRP1
  hgvsc: ENST00000467446.2:n.12A>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000577289
  gene symbol: NSRP1
  hgvsc: ENST00000577289.2:n.45+302A>C
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000466640
  ensembl transcript: ENST00000479218
  gene symbol: NSRP1
  hgvsc: ENST00000479218.2:c.21-137A>C
  variant of: http://identifiers.org/hgnc/25305
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6444
  bin: 1.25e1
  variant carriers: 4955
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.75e1
  variant carriers: 124
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.75e1
  variant carriers: 275
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.25e1
  variant carriers: 322
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 92
genotype depth: GenotypeDepth
  all individuals: 2318
  bin: 1.75e1
  variant carriers: 2097
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 3.75e1
  variant carriers: 472
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 3.25e1
  variant carriers: 624
genotype depth: GenotypeDepth
  all individuals: 15379
  bin: 2.5e0
  variant carriers: 4351
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 2.25e1
  variant carriers: 1328
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 216
genotype quality: GenotypeQuality
num of homozygotes: 3983
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: A
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP

17-28444183-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28444183
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28444183
    reference: chr 17
allele count: 1
allele frequency: 3.306440946964687e-5
allele num: 30244
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000199071
  ensembl transcript: ENST00000362201
  gene symbol: MIR423
  hgvsc: ENST00000362201.2:n.87A>T
  variant of: http://identifiers.org/hgnc/31880
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000463722
  ensembl transcript: ENST00000584317
  gene symbol: NSRP1
  hgvsc: ENST00000584317.1:c.20+302A>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000466640
  ensembl transcript: ENST00000479218
  gene symbol: NSRP1
  hgvsc: ENST00000479218.2:c.21-137A>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000540900
  gene symbol: NSRP1
  hgvsc: ENST00000540900.3:n.321+302A>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464569
  ensembl transcript: ENST00000475652
  gene symbol: NSRP1
  hgvsc: ENST00000475652.1:c.21-137A>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000577289
  gene symbol: NSRP1
  hgvsc: ENST00000577289.2:n.45+302A>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464237
  ensembl transcript: ENST00000584423
  gene symbol: NSRP1
  hgvsc: ENST00000584423.1:c.20+302A>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000462820
  ensembl transcript: ENST00000584154
  gene symbol: NSRP1
  hgvsc: ENST00000584154.1:c.20+302A>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000583301
  gene symbol: NSRP1
  hgvsc: ENST00000583301.1:n.25+302A>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000378303
  ensembl transcript: ENST00000394826
  gene symbol: NSRP1
  hgvsc: ENST00000394826.4:c.20+302A>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266919
  ensembl transcript: ENST00000586878
  gene symbol: MIR3184
  hgvsc: ENST00000586878.1:n.8T>A
  variant of: http://identifiers.org/hgnc/38182
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000465442
  ensembl transcript: ENST00000585881
  gene symbol: NSRP1
  hgvsc: ENST00000585881.1:c.-216A>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000467446
  gene symbol: NSRP1
  hgvsc: ENST00000467446.2:n.12A>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+227T>A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000247026
  ensembl transcript: ENST00000247026
  gene symbol: NSRP1
  hgvsc: ENST00000247026.5:c.20+302A>T
  variant of: http://identifiers.org/hgnc/25305
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20438
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2318
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15379
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

17-28444193-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28444193
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28444193
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 20894
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000467446
  gene symbol: NSRP1
  hgvsc: ENST00000467446.2:n.22G>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000462820
  ensembl transcript: ENST00000584154
  gene symbol: NSRP1
  hgvsc: ENST00000584154.1:c.20+312G>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464569
  ensembl transcript: ENST00000475652
  gene symbol: NSRP1
  hgvsc: ENST00000475652.1:c.21-127G>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000468327
  ensembl transcript: ENST00000580103
  gene symbol: NSRP1
  hgvsc: ENST00000580103.2:c.-300G>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000465442
  ensembl transcript: ENST00000585881
  gene symbol: NSRP1
  hgvsc: ENST00000585881.1:c.-206G>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000463722
  ensembl transcript: ENST00000584317
  gene symbol: NSRP1
  hgvsc: ENST00000584317.1:c.20+312G>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000378303
  ensembl transcript: ENST00000394826
  gene symbol: NSRP1
  hgvsc: ENST00000394826.4:c.20+312G>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000466640
  ensembl transcript: ENST00000479218
  gene symbol: NSRP1
  hgvsc: ENST00000479218.2:c.21-127G>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000247026
  ensembl transcript: ENST00000247026
  gene symbol: NSRP1
  hgvsc: ENST00000247026.5:c.20+312G>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+217C>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000583301
  gene symbol: NSRP1
  hgvsc: ENST00000583301.1:n.25+312G>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464237
  ensembl transcript: ENST00000584423
  gene symbol: NSRP1
  hgvsc: ENST00000584423.1:c.20+312G>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000540900
  gene symbol: NSRP1
  hgvsc: ENST00000540900.3:n.321+312G>T
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000577289
  gene symbol: NSRP1
  hgvsc: ENST00000577289.2:n.45+312G>T
  variant of: http://identifiers.org/hgnc/25305
canonical: false
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 13957
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29720
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4508
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff

17-28444205-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 28444205
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 28444205
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 17646
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464237
  ensembl transcript: ENST00000584423
  gene symbol: NSRP1
  hgvsc: ENST00000584423.1:c.20+324G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000577289
  gene symbol: NSRP1
  hgvsc: ENST00000577289.2:n.45+324G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000378303
  ensembl transcript: ENST00000394826
  gene symbol: NSRP1
  hgvsc: ENST00000394826.4:c.20+324G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000247026
  ensembl transcript: ENST00000247026
  gene symbol: NSRP1
  hgvsc: ENST00000247026.5:c.20+324G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000468327
  ensembl transcript: ENST00000580103
  gene symbol: NSRP1
  hgvsc: ENST00000580103.2:c.-288G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000466640
  ensembl transcript: ENST00000479218
  gene symbol: NSRP1
  hgvsc: ENST00000479218.2:c.21-115G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000463722
  ensembl transcript: ENST00000584317
  gene symbol: NSRP1
  hgvsc: ENST00000584317.1:c.20+324G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000464569
  ensembl transcript: ENST00000475652
  gene symbol: NSRP1
  hgvsc: ENST00000475652.1:c.21-115G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000465442
  ensembl transcript: ENST00000585881
  gene symbol: NSRP1
  hgvsc: ENST00000585881.1:c.-194G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000583301
  gene symbol: NSRP1
  hgvsc: ENST00000583301.1:n.25+324G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000540900
  gene symbol: NSRP1
  hgvsc: ENST00000540900.3:n.321+324G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126653
  ensembl transcript: ENST00000467446
  gene symbol: NSRP1
  hgvsc: ENST00000467446.2:n.34G>A
  variant of: http://identifiers.org/hgnc/25305
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000265394
  ensembl transcript: ENST00000582938
  gene symbol: RP11-1148O4.2
  hgvsc: ENST00000582938.1:n.106+205C>T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126653
  ensembl protein: ENSP00000462820
  ensembl transcript: ENST00000584154
  gene symbol: NSRP1
  hgvsc: ENST00000584154.1:c.20+324G>A
  variant of: http://identifiers.org/hgnc/25305
canonical: false
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3686
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32218
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10945
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8069
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1221
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4426
bin: 9.75e1
variant carriers: 22

South Asian
type: Population
allele count: 22
allele frequency: 1.332364341085271e-3
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.002e0

FS
type: SiteQuality
SIO_000300: 1.168e0

MQ
type: SiteQuality
SIO_000300: 5.889e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.184e1

DP
type: SiteQuality
SIO_000300: 1.689896e6

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3900
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35534
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2763
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3163
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997152704930316e-5
allele num: 66730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.528e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.55e-1

FS
type: SiteQuality
SIO_000300: 1.339e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e0

MQRankSum
type: SiteQuality
SIO_000300: -2.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.37e0

VQSLOD
type: SiteQuality
SIO_000300: 1.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.987e1

DP
type: SiteQuality
SIO_000300: 1.688873e6

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4427
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 2762
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3163
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.727712508638562e-4
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.816860465116279e-4
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.796429399489915e-4
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.282e1

MQRankSum
type: SiteQuality
SIO_000300: 1.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.24e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.689981e6

VQSLOD
type: SiteQuality
SIO_000300: 1.59e0

MQ
type: SiteQuality
SIO_000300: 5.897e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -9.31e-1

GenotypeQuality
all individuals: 15
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2760
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8063
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 10
allele frequency: 8.638562543192813e-4
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997152704930316e-5
allele num: 66730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 19
allele frequency: 2.203153988868274e-3
allele num: 8624
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.69262e6

MQ
type: SiteQuality
SIO_000300: 5.936e1

FS
type: SiteQuality
SIO_000300: 5.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.77e0

MQRankSum
type: SiteQuality
SIO_000300: 6.74e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.32e0

QD
type: SiteQuality
SIO_000300: 1.396e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.24e-1

GenotypeQuality
all individuals: 4449
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8068
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2760
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1275
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3162
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.496268097479092e-5
allele num: 66722
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.690377e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.27e0

VQSLOD
type: SiteQuality
SIO_000300: 9.51e-1

QD
type: SiteQuality
SIO_000300: 1.327e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 5.23e-1

MQ
type: SiteQuality
SIO_000300: 5.921e1

MQRankSum
type: SiteQuality
SIO_000300: 2.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.88e-1

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8068
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4448
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.18e1

MQ
type: SiteQuality
SIO_000300: 5.868e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.77e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.478e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

FS
type: SiteQuality
SIO_000300: 7.323e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.575e0

DP
type: SiteQuality
SIO_000300: 1.690304e6

GenotypeQuality
all individuals: 27
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1223
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35504
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.888e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.636e0

VQSLOD
type: SiteQuality
SIO_000300: -7.737000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 3.751e0

DP
type: SiteQuality
SIO_000300: 1.690305e6

MQRankSum
type: SiteQuality
SIO_000300: 1.67e0

QD
type: SiteQuality
SIO_000300: 1.267e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.548e0

GenotypeQuality
all individuals: 2759
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3162
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4449
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35507
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3894
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.01e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.559e0

MQRankSum
type: SiteQuality
SIO_000300: 7.14e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.54e-1

MQ
type: SiteQuality
SIO_000300: 5.936e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.215e0

FS
type: SiteQuality
SIO_000300: 6.919999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.690289e6

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1274
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1224
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35497
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2759
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4450
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.031e1

VQSLOD
type: SiteQuality
SIO_000300: 1.59e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.02e-1

FS
type: SiteQuality
SIO_000300: 3.381e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQ
type: SiteQuality
SIO_000300: 5.945e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.52e-1

DP
type: SiteQuality
SIO_000300: 1.690231e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.32e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.08e-1

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4450
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1225
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35483
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2759
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3161
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.1e-1

MQ
type: SiteQuality
SIO_000300: 5.897e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.199e0

FS
type: SiteQuality
SIO_000300: 5.193e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.607e0

DP
type: SiteQuality
SIO_000300: 1.690251e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.86e-1

QD
type: SiteQuality
SIO_000300: 2.08e0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1225
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1274
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4468
bin: 9.75e1
variant carriers: 20

GenotypeQuality
all individuals: 3161
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.422480620155039e-4
allele num: 16512
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 1.948616482297569e-4
allele num: 66714
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.061849357011635e-4
allele num: 9798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.322e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.88e-1

DP
type: SiteQuality
SIO_000300: 1.692126e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.05e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.45e0

MQRankSum
type: SiteQuality
SIO_000300: 2.18e-1

MQ
type: SiteQuality
SIO_000300: 5.901e1

FS
type: SiteQuality
SIO_000300: 5.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.3e-1

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4458
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1275
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8065
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2757
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49902563333833e-5
allele num: 66710
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.63e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.1e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 6.301e0

MQ
type: SiteQuality
SIO_000300: 5.908e1

QD
type: SiteQuality
SIO_000300: 1.204e1

VQSLOD
type: SiteQuality
SIO_000300: 1.44e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.64e0

DP
type: SiteQuality
SIO_000300: 1.690415e6

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8061
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4474
bin: 9.75e1
variant carriers: 18

GenotypeQuality
all individuals: 3158
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3888
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35459
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2757
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 17
allele frequency: 1.735402204981625e-3
allele num: 9796
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499115521842113e-5
allele num: 66706
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.691944e6

MQ
type: SiteQuality
SIO_000300: 5.844e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: -4.54e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.5e-1

FS
type: SiteQuality
SIO_000300: 5.28e-1

QD
type: SiteQuality
SIO_000300: 1.2e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.701e0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4478
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1223
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1274
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35446
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8065
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66702
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 11
allele frequency: 6.662628709872804e-4
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.846e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.6e-2

DP
type: SiteQuality
SIO_000300: 1.691411e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.98e-1

FS
type: SiteQuality
SIO_000300: 1.178e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.63e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.128e-1

QD
type: SiteQuality
SIO_000300: 1.166e1

GenotypeQuality
all individuals: 140
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4477
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2759
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8034
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.503422601176894e-5
allele num: 66616
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.927e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.74e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.643e0

DP
type: SiteQuality
SIO_000300: 1.689145e6

FS
type: SiteQuality
SIO_000300: 1.2508e1

QD
type: SiteQuality
SIO_000300: 1.086e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.9e-1

GenotypeQuality
all individuals: 25
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8035
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1224
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3871
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.51285930408472e-4
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.207e0

DP
type: SiteQuality
SIO_000300: 1.688982e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.33e-1

FS
type: SiteQuality
SIO_000300: 1.0278e1

MQ
type: SiteQuality
SIO_000300: 5.964e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.23e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.056e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.93e0

QD
type: SiteQuality
SIO_000300: 1.204e1

GenotypeQuality
all individuals: 26
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1224
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3141
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1275
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4476
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501185936890143e-5
allele num: 66614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.828e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.1e0

MQRankSum
type: SiteQuality
SIO_000300: 1.66e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.585e0

QD
type: SiteQuality
SIO_000300: 9.51e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.011e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.688955e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.85e0

GenotypeQuality
all individuals: 157
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35346
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3141
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8031
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4478
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9788
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.002642325246217e-5
allele num: 66608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.92e0

FS
type: SiteQuality
SIO_000300: 2.769e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.649999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.31e1

VQSLOD
type: SiteQuality
SIO_000300: 6.6e-2

DP
type: SiteQuality
SIO_000300: 1.688704e6

MQ
type: SiteQuality
SIO_000300: 5.913e1

GenotypeQuality
all individuals: 8020
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2758
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4475
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1224
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3138
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9784
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66588
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.185e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.400000000000001e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.153e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.96e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

QD
type: SiteQuality
SIO_000300: 1.531e1

VQSLOD
type: SiteQuality
SIO_000300: -1.072e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.379e0

DP
type: SiteQuality
SIO_000300: 1.687172e6

GenotypeQuality
all individuals: 4476
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3866
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9782
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.728608470181504e-4
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.906e1

VQSLOD
type: SiteQuality
SIO_000300: -7.216e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.0e0

FS
type: SiteQuality
SIO_000300: 5.401e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.090000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.685455e6

MQRankSum
type: SiteQuality
SIO_000300: 1.63e0

QD
type: SiteQuality
SIO_000300: 1.472e1

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7943
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3130
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2753
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.022704029453876e-4
allele num: 9778
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.654135338345865e-4
allele num: 66500
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.91e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 7.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.85e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.65e-1

QD
type: SiteQuality
SIO_000300: 1.476e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.16e-1

DP
type: SiteQuality
SIO_000300: 1.683492e6

MQ
type: SiteQuality
SIO_000300: 5.899e1

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3130
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1275
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3858
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4478
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 291
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9770
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504573904670197e-5
allele num: 66464
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.673e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.11e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.11e-1

DP
type: SiteQuality
SIO_000300: 1.682277e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.755e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.45e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.201e0

MQRankSum
type: SiteQuality
SIO_000300: -6.7e-2

GenotypeQuality
all individuals: 7894
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3122
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9776
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66446
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.7e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.35e0

DP
type: SiteQuality
SIO_000300: 1.687137e6

MQRankSum
type: SiteQuality
SIO_000300: -1.969e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.46e-2

MQ
type: SiteQuality
SIO_000300: 5.518e1

QD
type: SiteQuality
SIO_000300: 1.374e1

GenotypeQuality
all individuals: 1270
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3851
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2747
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3122
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4657
bin: 9.75e1
variant carriers: 193

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 7.786814327738363e-4
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 182
allele frequency: 1.861702127659574e-2
allele num: 9776
num of homozygotes: 2

Other
type: Population
allele count: 1
allele frequency: 1.118568232662192e-3
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.009962977455377e-5
allele num: 66446
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.687137e6

QD
type: SiteQuality
SIO_000300: 1.374e1

VQSLOD
type: SiteQuality
SIO_000300: 3.35e0

MQRankSum
type: SiteQuality
SIO_000300: -1.969e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.46e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.59e-1

MQ
type: SiteQuality
SIO_000300: 5.518e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.78e-1

GenotypeQuality
all individuals: 352
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 6.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12808
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 750
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8246
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 1.793185893604304e-3
allele num: 3346
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1324
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.3e0

FS
type: SiteQuality
SIO_000300: 2.634e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.29e-1

QD
type: SiteQuality
SIO_000300: 1.442e1

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.63284e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.63e-2

GenotypeQuality
all individuals: 8586
bin: 9.75e1
variant carriers: 415

GenotypeQuality
all individuals: 617
bin: 6.25e1
variant carriers: 16

GenotypeQuality
all individuals: 76
bin: 4.75e1
variant carriers: 21

Other
type: Population
allele count: 1
allele frequency: 4.065040650406504e-3
allele num: 246
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 268
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1362
num of homozygotes: 0

African
type: Population
allele count: 434
allele frequency: 1.210262130507529e-1
allele num: 3586
num of homozygotes: 20

Latino
type: Population
allele count: 6
allele frequency: 7.5e-3
allele num: 800
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 4.626773596545342e-4
allele num: 12968
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.213297743266198e-4
allele num: 8242
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.42e0

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

FS
type: SiteQuality
SIO_000300: 6.63e-1

DP
type: SiteQuality
SIO_000300: 8.97789e5

QD
type: SiteQuality
SIO_000300: 1.56e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.699999999999999e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.18e0

GenotypeQuality
all individuals: 8423
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 829
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2893
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2603
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23358
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 17021
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3500
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8272
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 274
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1410
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 248
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.526251526251526e-4
allele num: 13104
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.63e-1

DP
type: SiteQuality
SIO_000300: 9.02661e5

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.67e-2

FS
type: SiteQuality
SIO_000300: 4.549e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.15e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.063e1

GenotypeQuality
all individuals: 718
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2893
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2603
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 922
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 274
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 248
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.526251526251526e-4
allele num: 13104
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8272
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1410
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.63e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

FS
type: SiteQuality
SIO_000300: 4.549e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e-1

DP
type: SiteQuality
SIO_000300: 9.02661e5

QD
type: SiteQuality
SIO_000300: 1.063e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.67e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.15e-1

GenotypeQuality
all individuals: 806
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 51
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26295
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 938
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1690
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15528
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8426
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2702
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 338
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 910
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8326
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 250
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.423e1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.92e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.84e0

DP
type: SiteQuality
SIO_000300: 9.22756e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2474
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8429
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 42
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 616
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15493
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 971
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26725
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 809
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1634
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 336
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1550
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 922
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.465845793022574e-4
allele num: 13644
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.796420581655481e-4
allele num: 3576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8326
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.056e0

QD
type: SiteQuality
SIO_000300: 1.126e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.742e0

MQRankSum
type: SiteQuality
SIO_000300: 3.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.84e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.66e-1

DP
type: SiteQuality
SIO_000300: 9.23613e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

GenotypeDepth
all individuals: 601
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 641
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1584
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26776
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 965
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 590
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2538
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 797
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15437
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8430
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 280
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.075268817204301e-3
allele num: 930
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 2.198446431188627e-4
allele num: 13646
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8316
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 342
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.88e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.83e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.88e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.73e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

QD
type: SiteQuality
SIO_000300: 9.41e0

DP
type: SiteQuality
SIO_000300: 9.24203e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.4e-2

GenotypeDepth
all individuals: 310
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2300
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 15605
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1482
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 539
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 744
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8429
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 743
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 962
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26977
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 340
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8330
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 916
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 7.303534910896874e-5
allele num: 13692
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.089e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.77e-1

DP
type: SiteQuality
SIO_000300: 9.25372e5

FS
type: SiteQuality
SIO_000300: 1.663e0

VQSLOD
type: SiteQuality
SIO_000300: 4.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.91e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.330000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.78e-1

GenotypeDepth
all individuals: 768
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16367
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26012
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 644
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 728
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 838
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2619
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1606
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8429
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 362
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13758
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.81214848143982e-4
allele num: 3556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 342
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 920
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 240
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8362
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 6.28e0

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

FS
type: SiteQuality
SIO_000300: 5.636e0

DP
type: SiteQuality
SIO_000300: 9.2018e5

VQSLOD
type: SiteQuality
SIO_000300: -2.017e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.18e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.53e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.95e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.62e0

GenotypeDepth
all individuals: 310
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 838
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1606
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 644
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16367
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2619
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26012
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 728
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8429
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 342
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 240
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.81214848143982e-4
allele num: 3556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13758
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 920
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8362
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.636e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.62e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.18e0

VQSLOD
type: SiteQuality
SIO_000300: -2.017e0

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.53e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.95e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.2018e5

QD
type: SiteQuality
SIO_000300: 6.28e0

GenotypeDepth
all individuals: 256
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1025
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 204
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 769
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 25383
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1711
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 724
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 811
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8428
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 760
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16759
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2679
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 7.316359379572725e-5
allele num: 13668
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 238
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1580
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8344
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 916
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 330
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.14e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

FS
type: SiteQuality
SIO_000300: 3.297e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.07e-2

DP
type: SiteQuality
SIO_000300: 9.17639e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.21e0

MQ
type: SiteQuality
SIO_000300: 5.901e1

VQSLOD
type: SiteQuality
SIO_000300: -2.603e0

QD
type: SiteQuality
SIO_000300: 4.16e0

GenotypeQuality
all individuals: 8428
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 281
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 783
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19211
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 462
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22804
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2339
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2336
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 7.410701052319549e-5
allele num: 13494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1532
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 320
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 234
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8312
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.42e-2

DP
type: SiteQuality
SIO_000300: 9.01446e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.17e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.25e-1

MQ
type: SiteQuality
SIO_000300: 5.787e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.25e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.671e0

QD
type: SiteQuality
SIO_000300: 1.394e1

GenotypeQuality
all individuals: 3059
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19781
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 995
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8427
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 247
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20900
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2707
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3492
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 312
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13340
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.20627261761158e-4
allele num: 8290
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 228
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.227e0

DP
type: SiteQuality
SIO_000300: 8.95894e5

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.468e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.56e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.26e-1

QD
type: SiteQuality
SIO_000300: 1.348e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3176
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20932
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18670
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1219
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 680
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8428
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 234
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8256
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1460
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 308
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13144
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3454
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.2e-1

QD
type: SiteQuality
SIO_000300: 1.041e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.84e-2

DP
type: SiteQuality
SIO_000300: 8.86204e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.937e-1

GenotypeQuality
all individuals: 21711
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3986
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3245
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1442
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8428
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 635
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16996
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3414
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 298
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12834
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 226
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 7.092198581560284e-4
allele num: 1410
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8244
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.04e-2

MQ
type: SiteQuality
SIO_000300: 5.975e1

MQRankSum
type: SiteQuality
SIO_000300: 5.16e-1

FS
type: SiteQuality
SIO_000300: 4.091e0

DP
type: SiteQuality
SIO_000300: 8.7879e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.6e-1

QD
type: SiteQuality
SIO_000300: 9.35e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.324e0

VQSLOD
type: SiteQuality
SIO_000300: -3.111e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.62e0

GenotypeQuality
all individuals: 8429
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3153
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21947
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1531
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16510
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4223
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12728
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 296
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.237623762376238e-3
allele num: 808
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3398
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8236
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 226
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1396
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

DP
type: SiteQuality
SIO_000300: 8.76157e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.11e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 7.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.33e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.456e0

QD
type: SiteQuality
SIO_000300: 6.66e0

FS
type: SiteQuality
SIO_000300: 6.99e0

GenotypeQuality
all individuals: 22186
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1581
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4538
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15754
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8428
bin: 9.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12678
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3380
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1364
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 224
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 286
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8220
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.36e-1

DP
type: SiteQuality
SIO_000300: 8.73007e5

MQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.17e-2

QD
type: SiteQuality
SIO_000300: 4.74e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.98e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.772e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4639
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1638
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 282
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3309
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8429
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 419
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15427
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 629
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 247
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8206
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 7.906388361796332e-5
allele num: 12648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 224
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 284
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3362
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1360
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.52e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.22e-2

QD
type: SiteQuality
SIO_000300: 1.387e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

DP
type: SiteQuality
SIO_000300: 8.71801e5

GenotypeQuality
all individuals: 361
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8428
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22514
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14370
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1724
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5103
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8192
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 224
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.972651605231867e-4
allele num: 3364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1358
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 272
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.862e0

QD
type: SiteQuality
SIO_000300: 8.02e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.79e-1

DP
type: SiteQuality
SIO_000300: 8.67509e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.42e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.23e0

MQRankSum
type: SiteQuality
SIO_000300: 6.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.25e-2

MQ
type: SiteQuality
SIO_000300: 5.965e1

GenotypeQuality
all individuals: 22566
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2054
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4085
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12806
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8428
bin: 9.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 220
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 732
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 5.977286312014345e-4
allele num: 3346
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 268
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1330
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12308
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8160
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.83e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.66e-1

DP
type: SiteQuality
SIO_000300: 8.63257e5

VQSLOD
type: SiteQuality
SIO_000300: -3.969e-1

FS
type: SiteQuality
SIO_000300: 5.328e0

MQRankSum
type: SiteQuality
SIO_000300: 2.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.39e-2

QD
type: SiteQuality
SIO_000300: 1.456e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.77e-1

MQ
type: SiteQuality
SIO_000300: 5.807e1

GenotypeQuality
all individuals: 10228
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22033
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6422
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2694
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 246
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5622
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 616
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8427
bin: 9.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 698
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1294
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3284
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11954
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 220
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8152
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.22e-1

DP
type: SiteQuality
SIO_000300: 8.59219e5

VQSLOD
type: SiteQuality
SIO_000300: -1.154e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.53e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.21e-1

FS
type: SiteQuality
SIO_000300: 2.158e0

QD
type: SiteQuality
SIO_000300: 7.85e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

GenotypeQuality
all individuals: 3116
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 6597
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 631
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8970
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21491
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6784
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8428
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 700
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 216
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 248
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8134
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3244
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11774
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1258
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.60356e5

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.74e-2

MQRankSum
type: SiteQuality
SIO_000300: -5.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.186e0

FS
type: SiteQuality
SIO_000300: 4.0742e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.309e0

QD
type: SiteQuality
SIO_000300: 2.352e1

MQ
type: SiteQuality
SIO_000300: 5.604e1

GenotypeDepth
all individuals: 116
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 303
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1365
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 7123
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3594
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 18752
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 977
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7900
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 915
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4772
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 287
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8920
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 554
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 343
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 451
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1303
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 3.107520198881293e-4
allele num: 3218
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 262
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 8.350033400133601e-5
allele num: 11976
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8418
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1068
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 326
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.06e-2

DP
type: SiteQuality
SIO_000300: 5.51157e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.6e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.1e0

VQSLOD
type: SiteQuality
SIO_000300: -9.039999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

QD
type: SiteQuality
SIO_000300: 1.095e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.39e-1

GenotypeDepth
all individuals: 53
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 101
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1364
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 3373
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2781
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1130
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5834
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 855
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 953
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 97
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20913
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18610
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 314
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1292
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 433
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 378
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1234
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 272
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 932
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 4.066363044892648e-4
allele num: 12296
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3272
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.11e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

DP
type: SiteQuality
SIO_000300: 5.97246e5

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.22e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.11e1

VQSLOD
type: SiteQuality
SIO_000300: 3.94e0

GenotypeDepth
all individuals: 4281
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 168
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29870
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1357
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 662
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1760
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1132
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 871
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13390
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6998
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1334
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 290
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1228
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3464
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.572e1

MQRankSum
type: SiteQuality
SIO_000300: 7.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.51e-1

DP
type: SiteQuality
SIO_000300: 6.52699e5

ClippingRankSum
type: SiteQuality
SIO_000300: -7.51e-1

QD
type: SiteQuality
SIO_000300: 1.423e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-2

VQSLOD
type: SiteQuality
SIO_000300: -7.651e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.51e-1

GenotypeDepth
all individuals: 38
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 32
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1359
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 12486
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1334
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7422
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1411
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 901
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 832
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31218
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 606
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1318
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8696
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.448435689455388e-4
allele num: 13808
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1610
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.158e0

QD
type: SiteQuality
SIO_000300: 1.108e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.398e0

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

FS
type: SiteQuality
SIO_000300: 1.6133e1

DP
type: SiteQuality
SIO_000300: 6.63465e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.25e-2

GenotypeDepth
all individuals: 523
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 169
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 63
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1493
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 38
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 32
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11073
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 800
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1357
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 158
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1332
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1379
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32586
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7850
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1774
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.836204539239814e-5
allele num: 14628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3678
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8746
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 728
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 306
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.73e-1

DP
type: SiteQuality
SIO_000300: 6.80387e5

QD
type: SiteQuality
SIO_000300: 1.3e1

VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.09e-2

MQ
type: SiteQuality
SIO_000300: 5.811e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

FS
type: SiteQuality
SIO_000300: 5.078e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.07e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.88e-1

GenotypeDepth
all individuals: 38
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 228
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 63
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 101
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 100
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 53
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32688
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 612
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1398
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 652
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11002
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7843
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1357
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 506
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 816
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1338
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.809206046574969e-5
allele num: 14686
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8776
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 306
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3686
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1818
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 756
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.2e-1

QD
type: SiteQuality
SIO_000300: 9.0e0

DP
type: SiteQuality
SIO_000300: 6.80737e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.72e-2

FS
type: SiteQuality
SIO_000300: 9.988e0

VQSLOD
type: SiteQuality
SIO_000300: -9.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.6e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.31e0

GenotypeDepth
all individuals: 3915
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 32
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1487
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 64
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 101
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 100
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32688
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 816
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 652
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 506
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 612
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1398
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11002
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1338
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1357
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7843
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14686
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1584
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.13947128532361e-4
allele num: 8776
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 756
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3686
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 306
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1818
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.6e0

VQSLOD
type: SiteQuality
SIO_000300: -9.9e-2

DP
type: SiteQuality
SIO_000300: 6.80737e5

MQRankSum
type: SiteQuality
SIO_000300: 2.2e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.31e-1

FS
type: SiteQuality
SIO_000300: 9.988e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.72e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.31e0

GenotypeDepth
all individuals: 509
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 118
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 32
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 64
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 38
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 53
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 668
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7708
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32462
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 833
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11058
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1565
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1357
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1337
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.78334011667345e-5
allele num: 14742
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1830
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 304
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3682
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8776
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.80162e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.66e0

VQSLOD
type: SiteQuality
SIO_000300: -1.796e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.07e-2

MQRankSum
type: SiteQuality
SIO_000300: -5.24e0

MQ
type: SiteQuality
SIO_000300: 5.125e1

QD
type: SiteQuality
SIO_000300: 9.18e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.801e0

FS
type: SiteQuality
SIO_000300: 1.0455e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.83e0

GenotypeDepth
all individuals: 168
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 64
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 228
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 115
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 38
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4970
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 631
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10983
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32619
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 833
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 403
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1356
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1493
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 677
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7770
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1333
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3688
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8784
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14826
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1844
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 306
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.85e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.07e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.81202e5

VQSLOD
type: SiteQuality
SIO_000300: -1.237e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

GenotypeDepth
all individuals: 53
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 63
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 101
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 837
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 627
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 677
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1357
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 257
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11025
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1335
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7725
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1496
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32585
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3692
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1840
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.737636437137851e-5
allele num: 14842
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 306
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8784
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.285e0

VQSLOD
type: SiteQuality
SIO_000300: -1.424e0

MQRankSum
type: SiteQuality
SIO_000300: -4.371e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.09e-2

FS
type: SiteQuality
SIO_000300: 5.072e0

MQ
type: SiteQuality
SIO_000300: 5.236e1

DP
type: SiteQuality
SIO_000300: 6.81029e5

QD
type: SiteQuality
SIO_000300: 2.84e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.64e-1

GenotypeDepth
all individuals: 292
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 100
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 101
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 32
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1467
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 168
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1250
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 868
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11823
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31279
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 905
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2078
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 693
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7042
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1357
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.668444918644971e-5
allele num: 14996
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1716
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1874
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3732
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 302
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8764
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.56e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.867e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.18e0

FS
type: SiteQuality
SIO_000300: 9.334e0

DP
type: SiteQuality
SIO_000300: 6.72849e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.28e-2

QD
type: SiteQuality
SIO_000300: 1.819e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 4145
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 115
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 32
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 63
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 118
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3680
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 981
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2055
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1198
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 960
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 744
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12945
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6625
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1358
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 140
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30323
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 302
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15032
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 5.662514156285391e-4
allele num: 1766
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8688
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.114e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.46e-2

VQSLOD
type: SiteQuality
SIO_000300: -7.168e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.56e-1

DP
type: SiteQuality
SIO_000300: 6.61945e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.096e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.22e0

GenotypeDepth
all individuals: 226
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 118
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 168
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 38
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 64
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 63
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2406
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 631
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1035
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 922
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1674
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16598
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 297
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 452
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 132
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25848
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1084
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5627
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1357
bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8440
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1774
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.374948439433521e-4
allele num: 14546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1790
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.56e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

DP
type: SiteQuality
SIO_000300: 6.25152e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.02e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 9.88e-1

QD
type: SiteQuality
SIO_000300: 1.269e1

GenotypeDepth
all individuals: 53
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 32
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 500
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1061
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 63
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 118
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2435
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 808
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1358
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 145
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4947
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18926
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1112
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22515
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1062
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 990
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2365
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 7.139797229758674e-5
allele num: 14006
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1726
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1704
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 286
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8214
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.45e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.019e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.481e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.45e-2

DP
type: SiteQuality
SIO_000300: 5.96431e5

BaseQRankSum
type: SiteQuality
SIO_000300: 3.7e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.95e-1

QD
type: SiteQuality
SIO_000300: 6.34e0

GenotypeDepth
all individuals: 64
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 101
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1070
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 118
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 225
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 32
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1359
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 169
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 668
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1235
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 905
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3413
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1259
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20524
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1184
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17665
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3503
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4013
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12860
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 592
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 6.305170239596469e-4
allele num: 1586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3296
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1410
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7926
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 274
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.905e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.514e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.88e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e0

MQRankSum
type: SiteQuality
SIO_000300: 1.47e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.833e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.58004e5

QD
type: SiteQuality
SIO_000300: 3.058e1

GenotypeDepth
all individuals: 32
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2668
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 225
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4446
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 101
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 99
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3445
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 86
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3783
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16317
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1359
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1339
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 744
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3955
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20917
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 850
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1217
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7818
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3258
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1324
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 7.988496564946476e-5
allele num: 12518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 270
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.952e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.96e-2

DP
type: SiteQuality
SIO_000300: 5.42164e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.85e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.69e0

FS
type: SiteQuality
SIO_000300: 5.782e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeDepth
all individuals: 1013
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 101
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 21489
bin: 7.5e0
variant carriers: 1

GenotypeDepth
all individuals: 63
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2030
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 115
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4255
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1360
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 414
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1223
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 832
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4136
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1429
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3404
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 789
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1375
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20855
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14914
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 7.692307692307692e-4
allele num: 1300
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12306
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7746
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 266
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3226
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 532
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.34e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.47e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.03e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 7.78e0

DP
type: SiteQuality
SIO_000300: 5.35054e5

GenotypeDepth
all individuals: 1743
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1929
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 53
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 64
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 38
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 101
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 63
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 467
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 885
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4681
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2843
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13756
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 547
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1191
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1359
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 404
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1241
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4448
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1420
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 736
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20680
bin: 7.5e0
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 8.278145695364238e-5
allele num: 12080
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 262
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3192
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1454
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1248
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.459e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 8.02e-1

DP
type: SiteQuality
SIO_000300: 5.23254e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.495e0

MQRankSum
type: SiteQuality
SIO_000300: 3.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-2

QD
type: SiteQuality
SIO_000300: 3.108e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.04e-1

GenotypeDepth
all individuals: 101
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 38
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 286
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 21125
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1911
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 99
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 63
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 225
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4759
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 736
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13753
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2847
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1446
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4431
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1359
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 933
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20713
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1256
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 557
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 893
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 264
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12158
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3196
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1254
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1468
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

QD
type: SiteQuality
SIO_000300: 1.825e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-2

DP
type: SiteQuality
SIO_000300: 5.22571e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.141e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

GenotypeDepth
all individuals: 1444
bin: 2.75e1
variant carriers: 873

GenotypeDepth
all individuals: 20438
bin: 7.5e0
variant carriers: 11765

GenotypeDepth
all individuals: 264
bin: 5.25e1
variant carriers: 210

GenotypeDepth
all individuals: 140
bin: 9.75e1
variant carriers: 127

GenotypeDepth
all individuals: 200
bin: 6.25e1
variant carriers: 173

GenotypeDepth
all individuals: 71
bin: 8.25e1
variant carriers: 59

GenotypeDepth
all individuals: 51
bin: 8.75e1
variant carriers: 46

GenotypeDepth
all individuals: 103
bin: 7.25e1
variant carriers: 91

GenotypeQuality
all individuals: 1799
bin: 6.25e1
variant carriers: 732

GenotypeQuality
all individuals: 831
bin: 6.75e1
variant carriers: 623

GenotypeQuality
all individuals: 691
bin: 8.75e1
variant carriers: 655

GenotypeQuality
all individuals: 1394
bin: 3.25e1
variant carriers: 1220

GenotypeQuality
all individuals: 768
bin: 5.25e1
variant carriers: 729

GenotypeQuality
all individuals: 720
bin: 5.75e1
variant carriers: 706

GenotypeQuality
all individuals: 349
bin: 4.25e1
variant carriers: 317

GenotypeQuality
all individuals: 7042
bin: 2.25e1
variant carriers: 2511

GenotypeQuality
all individuals: 7161
bin: 2.5e0
variant carriers: 69

GenotypeQuality
all individuals: 3892
bin: 1.75e1
variant carriers: 3401

GenotypeQuality
all individuals: 10549
bin: 7.5e0
variant carriers: 2070

GenotypeQuality
all individuals: 642
bin: 4.75e1
variant carriers: 614

GenotypeQuality
all individuals: 1219
bin: 2.75e1
variant carriers: 1037

GenotypeQuality
all individuals: 2336
bin: 1.25e1
variant carriers: 1976

GenotypeQuality
all individuals: 701
bin: 3.75e1
variant carriers: 623

GenotypeQuality
all individuals: 517
bin: 7.75e1
variant carriers: 442

GenotypeQuality
all individuals: 557
bin: 8.25e1
variant carriers: 492

GenotypeQuality
all individuals: 9216
bin: 9.75e1
variant carriers: 8896

GenotypeQuality
all individuals: 497
bin: 7.25e1
variant carriers: 441

GenotypeQuality
all individuals: 721
bin: 9.25e1
variant carriers: 689

European (Non-Finnish)
type: Population
allele count: 7035
allele frequency: 5.080155979202773e-1
allele num: 13848
num of homozygotes: 1577

Latino
type: Population
allele count: 1504
allele frequency: 6.163934426229508e-1
allele num: 2440
num of homozygotes: 404

East Asian
type: Population
allele count: 1420
allele frequency: 7.915273132664437e-1
allele num: 1794
num of homozygotes: 548

European (Finnish)
type: Population
allele count: 435
allele frequency: 5.464824120603015e-1
allele num: 796
num of homozygotes: 94

African
type: Population
allele count: 992
allele frequency: 2.980769230769231e-1
allele num: 3328
num of homozygotes: 125

South Asian
type: Population
allele count: 4445
allele frequency: 5.731046931407943e-1
allele num: 7756
num of homozygotes: 1197

Other
type: Population
allele count: 148
allele frequency: 5.24822695035461e-1
allele num: 282
num of homozygotes: 38

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.049e1

MQRankSum
type: SiteQuality
SIO_000300: 1.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.533e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.1e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.33e-1

FS
type: SiteQuality
SIO_000300: 5.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

DP
type: SiteQuality
SIO_000300: 5.69138e5

GenotypeDepth
all individuals: 6444
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 103
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 400
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 51
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 71
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 340
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2000
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 200
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10549
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1219
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 701
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 831
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7161
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7042
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 721
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3892
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 720
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2336
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 691
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1799
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1394
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9216
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 768
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 557
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2440
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1794
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3328
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 7.221259387637204e-5
allele num: 13848
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 282
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7756
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.33e-1

QD
type: SiteQuality
SIO_000300: 2.049e1

MQRankSum
type: SiteQuality
SIO_000300: 1.53e-1

DP
type: SiteQuality
SIO_000300: 5.69138e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.533e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.1e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

GenotypeDepth
all individuals: 198
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 614
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 329
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 44
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 40
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 652
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29045
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 167
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13874
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1427
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1367
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 704
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1325
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1462
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2504
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 220
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10198
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1002
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4912
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1154
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3030
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 378
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.34251e5

QD
type: SiteQuality
SIO_000300: 2.662e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.63e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.54e-2

GenotypeDepth
all individuals: 1083
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 54
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1166
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 104
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 237
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 309
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2702
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 648
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1817
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30229
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9770
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1460
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1284
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 670
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 4.25e1
variant carriers: 0