http://identifiers.org/exac.variant/17-60600570-CAAAA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60600570
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60600566
    reference: chr 17
allele count: 5
allele frequency: 5.002501250625313e-5
allele num: 99950
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.267+33_267+36delAAAA
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.153+2366_153+2369delAAAA
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.267+33_267+36delAAAA
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.267+33_267+36delAAAA
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-85+33_-85+36delAAAA
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.267+33_267+36delAAAA
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.267+33_267+36delAAAA
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-181+33_-181+36delAAAA
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6672
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4999
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3817
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14674
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9779
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7341
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3076
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1080
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4816
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1474
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2579
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: CAAAA
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/17-60600570-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60600570
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60600570
    reference: chr 17
allele count: 6
allele frequency: 6.003001500750375e-5
allele num: 99950
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.267+32C>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-181+32C>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.267+32C>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-85+32C>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.267+32C>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.267+32C>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.153+2365C>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.267+32C>A
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4999
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6672
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3817
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7341
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14674
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9779
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2579
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1821
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1474
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1092
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP

17-60600570-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60600570
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60600570
    reference: chr 17
allele count: 1
allele frequency: 1.000500250125063e-5
allele num: 99950
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-85+32C>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.267+32C>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.267+32C>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.267+32C>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.267+32C>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.153+2365C>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-181+32C>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.267+32C>G
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3817
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9779
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7341
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4999
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14674
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6672
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2579
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1080
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1053
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6563
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1474
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

17-60600571-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60600571
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60600571
    reference: chr 17
allele count: 1
allele frequency: 1.160954769202192e-5
allele num: 86136
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.267+33A>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.267+33A>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.267+33A>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.267+33A>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-85+33A>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-181+33A>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.153+2366A>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.267+33A>G
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7132
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3092
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6483
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14459
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4998
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9607
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3927
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3062
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4682
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1036
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18613
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3247
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/17-60600577-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60600577
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60600577
    reference: chr 17
allele count: 1
allele frequency: 8.569274011105779e-6
allele num: 116696
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.153+2372A>C
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.267+39A>C
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.267+39A>C
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-181+39A>C
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-85+39A>C
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.267+39A>C
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.267+39A>C
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.267+39A>C
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1923
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6811
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14441
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10429
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5686
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3471
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9923
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1800
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1669
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5252
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5767
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/17-60600580-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60600580
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60600579
    reference: chr 17
allele count: 1
allele frequency: 8.623514599610217e-6
allele num: 115962
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.267+49delA
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.267+49delA
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.267+49delA
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-85+49delA
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.267+49delA
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-181+49delA
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.153+2382delA
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.267+49delA
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2045
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15062
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5594
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10313
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9634
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6580
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2141
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5114
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 983
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1496
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4294
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2078
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: CA
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/17-60600580-CAAA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60600580
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60600577
    reference: chr 17
allele count: 9
allele frequency: 7.761163139649196e-5
allele num: 115962
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-85+47_-85+49delAAA
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.153+2380_153+2382delAAA
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-181+47_-181+49delAAA
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.267+47_267+49delAAA
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.267+47_267+49delAAA
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.267+47_267+49delAAA
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.267+47_267+49delAAA
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.267+47_267+49delAAA
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15062
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5594
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9634
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10313
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6580
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2045
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2243
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2078
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2495
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1032
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4294
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: CAAA
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

17-60600587-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60600587
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60600587
    reference: chr 17
allele count: 3
allele frequency: 2.607289982791886e-5
allele num: 115062
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-181+49A>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.267+49A>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-85+49A>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.153+2382A>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.267+49A>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.267+49A>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.267+49A>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.267+49A>G
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3289
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5513
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8916
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17047
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5468
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5256
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2211
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 685
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3986
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5262
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1033
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/17-60600590-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60600590
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60600590
    reference: chr 17
allele count: 1
allele frequency: 8.757947837662679e-6
allele num: 114182
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.153+2385C>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-181+52C>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.267+52C>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.267+52C>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.267+52C>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.267+52C>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.267+52C>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-85+52C>A
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10028
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5572
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9773
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5428
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2376
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16332
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 681
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1530
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5128
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1265
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4552
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2214
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3098
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum

17-60601548-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60601548
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60601548
    reference: chr 17
allele count: 4
allele frequency: 3.604253018561903e-5
allele num: 110980
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-180-49G>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-85+1010G>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.153+3343G>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.267+1010G>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.268-49G>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.267+1010G>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.267+1010G>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.268-49G>A
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 15885
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4598
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15802
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14883
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6226
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18250
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3333
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5525
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1215
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2239
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2779
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum

17-60601553-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60601553
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60601553
    reference: chr 17
allele count: 1
allele frequency: 8.98069151324652e-6
allele num: 111350
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-85+1015G>C
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-180-44G>C
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.267+1015G>C
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.267+1015G>C
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.268-44G>C
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.268-44G>C
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.267+1015G>C
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.153+3348G>C
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24888
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13847
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4576
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6621
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7510
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1409
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2877
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2153
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1379
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6034
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP

17-60601565-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60601565
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60601565
    reference: chr 17
allele count: 1
allele frequency: 8.800492827598345e-6
allele num: 113630
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.153+3360A>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.268-32A>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.267+1027A>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.267+1027A>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.267+1027A>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.268-32A>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-180-32A>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-85+1027A>G
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4630
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40154
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3769
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8266
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1502
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44755
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3286
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1376
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2326
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

17-60601573-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60601573
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60601574
    reference: chr 17
allele count: 3
allele frequency: 2.571134727459719e-5
allele num: 116680
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-85+1036dupA
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.267+1036dupA
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.267+1036dupA
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.267+1036dupA
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-180-23dupA
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.153+3369dupA
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.268-23dupA
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.268-23dupA
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44066
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9364
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2318
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1377
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3623
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

17-60601576-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60601576
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60601576
    reference: chr 17
allele count: 1
allele frequency: 8.515131388477325e-6
allele num: 117438
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.267+1038C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.268-21C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-180-21C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.267+1038C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.268-21C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.267+1038C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-85+1038C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.153+3371C>T
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9696
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1923
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44435
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3621
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1748
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50156
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff

17-60601577-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60601577
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60601577
    reference: chr 17
allele count: 1
allele frequency: 8.47443263673497e-6
allele num: 118002
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.267+1039G>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.268-20G>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-180-20G>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.267+1039G>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.153+3372G>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.267+1039G>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-85+1039G>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.268-20G>A
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44855
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9831
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

17-60601588-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60601588
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60601588
    reference: chr 17
allele count: 2
allele frequency: 1.667667267026883e-5
allele num: 119928
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-85+1050G>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.267+1050G>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-180-9G>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.153+3383G>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.268-9G>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.267+1050G>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.267+1050G>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.268-9G>A
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10610
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45446
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52463
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

17-60601600-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60601600
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60601600
    reference: chr 17
allele count: 1
allele frequency: 8.28775070445881e-6
allele num: 120660
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.267+1062G>C
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-85+1062G>C
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.267+1062G>C
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.271G>C
  hgvsp: ENSP00000316512.9:p.Ala91Pro
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.267+1062G>C
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-177G>C
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.271G>C
  hgvsp: ENSP00000275780.7:p.Ala91Pro
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.153+3395G>C
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10937
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45566
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala91Pro
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

17-60601610-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60601610
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60601610
    reference: chr 17
allele count: 2
allele frequency: 1.655629139072848e-5
allele num: 120800
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.267+1072G>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.281G>A
  hgvsp: ENSP00000275780.7:p.Ser94Asn
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.281G>A
  hgvsp: ENSP00000316512.9:p.Ser94Asn
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.153+3405G>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.267+1072G>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-85+1072G>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-167G>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.267+1072G>A
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 11079
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45368
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1374
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser94Asn
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

17-60601611-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60601611
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60601611
    reference: chr 17
allele count: 4
allele frequency: 3.311258278145695e-5
allele num: 120800
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.282C>T
  hgvsp: ENST00000346027.5:c.282C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.153+3406C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.282C>T
  hgvsp: ENST00000326270.9:c.282C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.267+1073C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-85+1073C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-166C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.267+1073C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.267+1073C>T
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11106
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45345
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1376
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser94Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

17-60601639-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60601639
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60601639
    reference: chr 17
allele count: 5
allele frequency: 4.159456941301744e-5
allele num: 120208
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.267+1101G>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.310G>A
  hgvsp: ENSP00000275780.7:p.Val104Ile
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.267+1101G>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-138G>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-85+1101G>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.310G>A
  hgvsp: ENSP00000316512.9:p.Val104Ile
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.153+3434G>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.267+1101G>A
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 11203
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44384
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1375
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1118
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val104Ile
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-60601644-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60601644
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60601644
    reference: chr 17
allele count: 4
allele frequency: 3.337449521075993e-5
allele num: 119852
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-85+1106A>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-133A>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.315A>G
  hgvsp: ENST00000346027.5:c.315A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.267+1106A>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.315A>G
  hgvsp: ENST00000326270.9:c.315A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.267+1106A>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.153+3439A>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.267+1106A>G
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11162
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1880
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43954
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1483
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51538
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro105Pro
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

17-60601654-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60601654
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60601654
    reference: chr 17
allele count: 1
allele frequency: 8.443093549476529e-6
allele num: 118440
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.267+1116C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.325C>T
  hgvsp: ENSP00000316512.9:p.Arg109Ter
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.153+3449C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.325C>T
  hgvsp: ENSP00000275780.7:p.Arg109Ter
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.267+1116C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-123C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-85+1116C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.267+1116C>T
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: stop gained
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10955
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42386
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2673
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1370
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg109Ter
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD

17-60601663-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60601663
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60601663
    reference: chr 17
allele count: 1
allele frequency: 8.577359202648689e-6
allele num: 116586
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.267+1125C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.334C>T
  hgvsp: ENSP00000316512.9:p.Pro112Ser
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.153+3458C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.267+1125C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-114C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.334C>T
  hgvsp: ENSP00000275780.7:p.Pro112Ser
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-85+1125C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.267+1125C>T
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 40324
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2306
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10684
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1890
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47143
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4324
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro112Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/17-60601664-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60601664
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60601664
    reference: chr 17
allele count: 1
allele frequency: 8.579714123925391e-6
allele num: 116554
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.153+3459C>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.267+1126C>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.335C>A
  hgvsp: ENSP00000316512.9:p.Pro112Gln
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-85+1126C>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.267+1126C>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-113C>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.267+1126C>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.335C>A
  hgvsp: ENSP00000275780.7:p.Pro112Gln
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10714
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2880
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40270
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1371
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro112Gln
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

17-60601664-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60601664
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60601664
    reference: chr 17
allele count: 1
allele frequency: 8.579714123925391e-6
allele num: 116554
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.267+1126C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-113C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.335C>T
  hgvsp: ENSP00000316512.9:p.Pro112Leu
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.153+3459C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.267+1126C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-85+1126C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.335C>T
  hgvsp: ENSP00000275780.7:p.Pro112Leu
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.267+1126C>T
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40270
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2880
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10714
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro112Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP

17-60601665-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60601665
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60601665
    reference: chr 17
allele count: 1
allele frequency: 8.584575235217362e-6
allele num: 116488
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-85+1127G>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.336G>A
  hgvsp: ENST00000346027.5:c.336G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.153+3460G>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.267+1127G>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.267+1127G>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-112G>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.336G>A
  hgvsp: ENST00000326270.9:c.336G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.267+1127G>A
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2887
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10845
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40062
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4398
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3467
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro112Pro
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/17-60601668-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60601668
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60601668
    reference: chr 17
allele count: 1
allele frequency: 8.665961835104079e-6
allele num: 115394
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.267+1130A>C
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.339A>C
  hgvsp: ENSP00000316512.9:p.Gln113His
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-109A>C
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.267+1130A>C
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.267+1130A>C
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-85+1130A>C
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.339A>C
  hgvsp: ENSP00000275780.7:p.Gln113His
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.153+3463A>C
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38785
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3732
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10639
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1369
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5495
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gln113His
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

17-60601674-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60601674
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60601674
    reference: chr 17
allele count: 1
allele frequency: 8.896797153024911e-6
allele num: 112400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-103C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.345C>T
  hgvsp: ENST00000326270.9:c.345C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.345C>T
  hgvsp: ENST00000346027.5:c.345C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.153+3469C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.267+1136C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-85+1136C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.267+1136C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.267+1136C>T
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35207
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5929
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4273
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10041
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3126
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8191
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser115Ser
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

17-60601676-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60601676
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60601676
    reference: chr 17
allele count: 1
allele frequency: 8.942144326209424e-6
allele num: 111830
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-85+1138T>C
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.153+3471T>C
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.267+1138T>C
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.347T>C
  hgvsp: ENSP00000316512.9:p.Leu116Ser
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.267+1138T>C
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.347T>C
  hgvsp: ENSP00000275780.7:p.Leu116Ser
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-101T>C
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.267+1138T>C
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34458
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9918
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6466
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4562
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1332
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40808
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu116Ser
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

17-60601685-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60601685
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60601685
    reference: chr 17
allele count: 1
allele frequency: 9.443405669820765e-6
allele num: 105894
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.267+1147C>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.356C>G
  hgvsp: ENSP00000316512.9:p.Pro119Arg
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.153+3480C>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-85+1147C>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.267+1147C>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.356C>G
  hgvsp: ENSP00000275780.7:p.Pro119Arg
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-92C>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.267+1147C>G
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 10787
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2849
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7230
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27505
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8741
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 853
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2339
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro119Arg
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

17-60601691-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60601691
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60601691
    reference: chr 17
allele count: 1
allele frequency: 9.769822970807769e-6
allele num: 102356
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-86C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.267+1153C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-85+1153C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.153+3486C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.362C>T
  hgvsp: ENSP00000275780.7:p.Pro121Leu
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.362C>T
  hgvsp: ENSP00000316512.9:p.Pro121Leu
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.267+1153C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.267+1153C>T
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 23741
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8712
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13733
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3366
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7630
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1367
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 645
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2234
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro121Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-60601715-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60601715
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60601715
    reference: chr 17
allele count: 5
allele frequency: 5.625309392016561e-5
allele num: 88884
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.267+1177T>C
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.363+23T>C
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.267+1177T>C
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.363+23T>C
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.153+3510T>C
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-85+1177T>C
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.267+1177T>C
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-85+23T>C
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3188
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6852
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5807
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26575
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2588
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13117
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 792
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 796
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6636
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3011
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1364
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 8.25e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: T
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

17-60601715-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60601715
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60601715
    reference: chr 17
allele count: 1
allele frequency: 1.125061878403312e-5
allele num: 88884
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.267+1177T>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.267+1177T>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.363+23T>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.153+3510T>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.363+23T>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-85+1177T>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-85+23T>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.267+1177T>G
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 26575
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13117
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5807
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2588
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6852
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3188
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 622
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5789
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 792
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6950
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1196
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

17-60601721-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60601721
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60601721
    reference: chr 17
allele count: 2
allele frequency: 2.32110113037625e-5
allele num: 86166
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.267+1183C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.363+29C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.153+3516C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.267+1183C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.267+1183C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-85+29C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-85+1183C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.363+29C>T
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4658
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26670
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13864
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7170
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3062
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1089
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5876
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3225
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 710
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

17-60601722-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60601722
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60601722
    reference: chr 17
allele count: 1
allele frequency: 1.172195522213105e-5
allele num: 85310
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.363+30C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-85+30C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.363+30C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.267+1184C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.267+1184C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.267+1184C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.153+3517C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-85+1184C>T
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3182
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4365
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26609
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14049
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2657
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7341
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6866
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5864
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1358
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5917
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27634
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

17-60601727-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60601727
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60601727
    reference: chr 17
allele count: 1
allele frequency: 1.213032824668236e-5
allele num: 82438
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.267+1189G>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.363+35G>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-85+35G>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.363+35G>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.267+1189G>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.153+3522G>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-85+1189G>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.267+1189G>A
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25923
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8488
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3020
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15085
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2009
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3703
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26585
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3684
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7307
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6122
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1476
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

17-60601728-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60601728
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60601728
    reference: chr 17
allele count: 127
allele frequency: 1.551656729547454e-3
allele num: 81848
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.267+1190T>C
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.153+3523T>C
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.363+36T>C
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-85+1190T>C
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.363+36T>C
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.267+1190T>C
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.267+1190T>C
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-85+36T>C
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25725
  bin: 1.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15315
  bin: 7.5e0
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 2787
  bin: 2.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3786
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8715
  bin: 1.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1471
  bin: 9.75e1
  variant carriers: 116
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3739
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 7.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 7354
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1565
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-60601737-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60601737
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60601737
    reference: chr 17
allele count: 1
allele frequency: 1.344592050771796e-5
allele num: 74372
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.267+1199A>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-85+45A>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.363+45A>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.267+1199A>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.267+1199A>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-85+1199A>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.153+3532A>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.363+45A>G
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4034
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22822
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18541
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9379
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6137
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3990
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3547
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1274
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1278
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21241
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ

17-60601738-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60601738
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60601738
    reference: chr 17
allele count: 2
allele frequency: 2.690124552766793e-5
allele num: 74346
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.267+1200G>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-85+46G>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.363+46G>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.267+1200G>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.267+1200G>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.153+3533G>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.363+46G>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-85+1200G>T
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4041
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22827
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18579
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2328
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9336
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6041
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3822
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3550
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21437
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1648
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum

17-60613480-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60613480
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60613480
    reference: chr 17
allele count: 12
allele frequency: 1.011719079335638e-4
allele num: 118610
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.364-51T>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.268-51T>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-84-51T>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-84-51T>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.268-51T>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.268-51T>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.154-51T>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.364-51T>G
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3842
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19021
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6907
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4369
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21497
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1842
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3202
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6478
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2605
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1817
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

17-60613485-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60613485
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60613485
    reference: chr 17
allele count: 1
allele frequency: 8.427439743805831e-6
allele num: 118660
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.268-46G>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.364-46G>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-84-46G>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.154-46G>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.268-46G>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-84-46G>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.364-46G>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.268-46G>T
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4689
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21695
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21104
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4380
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3790
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1641
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1250
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35680
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1364
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum

17-60613501-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60613501
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60613501
    reference: chr 17
allele count: 1
allele frequency: 8.404773911581778e-6
allele num: 118980
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.268-30T>C
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.268-30T>C
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.268-30T>C
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.154-30T>C
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-84-30T>C
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.364-30T>C
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.364-30T>C
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-84-30T>C
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25374
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22557
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4378
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3126
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 931
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1312
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1070
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

17-60613507-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60613507
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60613507
    reference: chr 17
allele count: 1
allele frequency: 8.38321345338095e-6
allele num: 119286
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.364-24G>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.268-24G>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-84-24G>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.364-24G>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.268-24G>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.268-24G>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-84-24G>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.154-24G>T
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22871
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4433
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26254
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3125
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1712
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1591
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff

17-60613511-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60613511
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60613511
    reference: chr 17
allele count: 1
allele frequency: 8.369321415419637e-6
allele num: 119484
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.268-20G>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.364-20G>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.268-20G>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-84-20G>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.268-20G>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-84-20G>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.364-20G>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.154-20G>A
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23042
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26698
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4428
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43289
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/17-60613515-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60613515
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60613515
    reference: chr 17
allele count: 1
allele frequency: 8.359107247345984e-6
allele num: 119630
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.268-16C>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.364-16C>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.364-16C>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.268-16C>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-84-16C>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-84-16C>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.268-16C>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.154-16C>A
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23178
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4461
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26998
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1593
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3126
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43666
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD

17-60613527-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60613527
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60613527
    reference: chr 17
allele count: 1
allele frequency: 8.311999202048076e-6
allele num: 120308
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-84-4C>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.364-4C>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.268-4C>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.268-4C>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-84-4C>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.364-4C>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.268-4C>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.154-4C>G
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23574
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4513
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27708
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44717
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3126
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
hgvs: c.364-4C>G
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/17-60613534-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60613534
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60613534
    reference: chr 17
allele count: 2
allele frequency: 1.659117681217129e-5
allele num: 120546
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.157C>A
  hgvsp: ENST00000580705.1:c.157C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.271C>A
  hgvsp: ENST00000581041.1:c.271C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-81C>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.367C>A
  hgvsp: ENST00000326270.9:c.367C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.367C>A
  hgvsp: ENST00000346027.5:c.367C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-81C>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.271C>A
  hgvsp: ENST00000343388.7:c.271C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.271C>A
  hgvsp: ENST00000542523.1:c.271C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23878
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4568
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27611
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44830
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg123Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

17-60613545-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60613545
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60613545
    reference: chr 17
allele count: 1
allele frequency: 8.282122210995345e-6
allele num: 120742
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.282G>T
  hgvsp: ENSP00000442311.1:p.Gln94His
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.378G>T
  hgvsp: ENSP00000275780.7:p.Gln126His
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.168G>T
  hgvsp: ENSP00000464516.1:p.Gln56His
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.282G>T
  hgvsp: ENSP00000462036.1:p.Gln94His
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-70G>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.282G>T
  hgvsp: ENSP00000340800.7:p.Gln94His
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.378G>T
  hgvsp: ENSP00000316512.9:p.Gln126His
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-70G>T
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24082
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4590
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27502
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6971
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1783
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44866
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gln126His
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum

17-60613547-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60613547
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60613547
    reference: chr 17
allele count: 1
allele frequency: 8.279790686891435e-6
allele num: 120776
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.380C>T
  hgvsp: ENSP00000275780.7:p.Pro127Leu
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.284C>T
  hgvsp: ENSP00000442311.1:p.Pro95Leu
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.284C>T
  hgvsp: ENSP00000462036.1:p.Pro95Leu
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.380C>T
  hgvsp: ENSP00000316512.9:p.Pro127Leu
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.170C>T
  hgvsp: ENSP00000464516.1:p.Pro57Leu
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-68C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-68C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.284C>T
  hgvsp: ENSP00000340800.7:p.Pro95Leu
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27456
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24171
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4592
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1778
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3123
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro127Leu
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

17-60613548-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60613548
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60613548
    reference: chr 17
allele count: 2
allele frequency: 1.65576620581174e-5
allele num: 120790
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-67C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.171C>T
  hgvsp: ENST00000580705.1:c.171C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.381C>T
  hgvsp: ENST00000326270.9:c.381C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.285C>T
  hgvsp: ENST00000343388.7:c.285C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.285C>T
  hgvsp: ENST00000581041.1:c.285C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-67C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.381C>T
  hgvsp: ENST00000346027.5:c.381C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.285C>T
  hgvsp: ENST00000542523.1:c.285C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4585
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27444
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24191
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1779
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3123
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Pro127Pro
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD

17-60613565-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60613565
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60613565
    reference: chr 17
allele count: 1
allele frequency: 8.268836409340477e-6
allele num: 120936
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.398G>T
  hgvsp: ENSP00000316512.9:p.Gly133Val
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.398G>T
  hgvsp: ENSP00000275780.7:p.Gly133Val
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.302G>T
  hgvsp: ENSP00000340800.7:p.Gly101Val
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-50G>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.302G>T
  hgvsp: ENSP00000462036.1:p.Gly101Val
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.188G>T
  hgvsp: ENSP00000464516.1:p.Gly63Val
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.302G>T
  hgvsp: ENSP00000442311.1:p.Gly101Val
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-50G>T
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27296
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4641
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24382
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6987
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1765
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly133Val
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ

17-60613566-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60613566
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60613566
    reference: chr 17
allele count: 2
allele frequency: 1.653821982601793e-5
allele num: 120932
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.303C>T
  hgvsp: ENST00000542523.1:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.399C>T
  hgvsp: ENST00000326270.9:c.399C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.399C>T
  hgvsp: ENST00000346027.5:c.399C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.303C>T
  hgvsp: ENST00000581041.1:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.303C>T
  hgvsp: ENST00000343388.7:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.189C>T
  hgvsp: ENST00000580705.1:c.189C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-49C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-49C>T
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24417
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4655
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27243
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6987
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly133Gly
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

17-60613582-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60613582
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60613582
    reference: chr 17
allele count: 1
allele frequency: 8.287475966319697e-6
allele num: 120664
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.205G>T
  hgvsp: ENSP00000464516.1:p.Ala69Ser
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.415G>T
  hgvsp: ENSP00000275780.7:p.Ala139Ser
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.319G>T
  hgvsp: ENSP00000442311.1:p.Ala107Ser
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.319G>T
  hgvsp: ENSP00000462036.1:p.Ala107Ser
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.319G>T
  hgvsp: ENSP00000340800.7:p.Ala107Ser
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-33G>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.415G>T
  hgvsp: ENSP00000316512.9:p.Ala139Ser
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-33G>T
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24609
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26544
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4629
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala139Ser
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

17-60613585-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60613585
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60613585
    reference: chr 17
allele count: 1
allele frequency: 8.29462508294625e-6
allele num: 120560
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.418A>G
  hgvsp: ENSP00000316512.9:p.Thr140Ala
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.322A>G
  hgvsp: ENSP00000340800.7:p.Thr108Ala
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-30A>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.208A>G
  hgvsp: ENSP00000464516.1:p.Thr70Ala
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.322A>G
  hgvsp: ENSP00000442311.1:p.Thr108Ala
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.418A>G
  hgvsp: ENSP00000275780.7:p.Thr140Ala
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-30A>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.322A>G
  hgvsp: ENSP00000462036.1:p.Thr108Ala
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24586
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26303
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4594
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1732
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3117
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr140Ala
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff

17-60613586-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60613586
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60613586
    reference: chr 17
allele count: 1
allele frequency: 8.295037908323241e-6
allele num: 120554
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.323C>T
  hgvsp: ENSP00000340800.7:p.Thr108Met
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.323C>T
  hgvsp: ENSP00000462036.1:p.Thr108Met
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-29C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-29C>T
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.419C>T
  hgvsp: ENSP00000316512.9:p.Thr140Met
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.323C>T
  hgvsp: ENSP00000442311.1:p.Thr108Met
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.419C>T
  hgvsp: ENSP00000275780.7:p.Thr140Met
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.209C>T
  hgvsp: ENSP00000464516.1:p.Thr70Met
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24595
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4621
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26258
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6805
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1580
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Thr140Met
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP

17-60613587-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60613587
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60613587
    reference: chr 17
allele count: 2
allele frequency: 1.659255326209597e-5
allele num: 120536
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.420G>A
  hgvsp: ENST00000346027.5:c.420G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.210G>A
  hgvsp: ENST00000580705.1:c.210G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-28G>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.324G>A
  hgvsp: ENST00000343388.7:c.324G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.324G>A
  hgvsp: ENST00000581041.1:c.324G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.324G>A
  hgvsp: ENST00000542523.1:c.324G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.420G>A
  hgvsp: ENST00000326270.9:c.420G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-28G>A
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4609
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26201
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24570
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr140Thr
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

17-60613593-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60613593
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60613593
    reference: chr 17
allele count: 1
allele frequency: 8.31849867735871e-6
allele num: 120214
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.426G>A
  hgvsp: ENST00000346027.5:c.426G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.426G>A
  hgvsp: ENST00000326270.9:c.426G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.216G>A
  hgvsp: ENST00000580705.1:c.216G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.330G>A
  hgvsp: ENST00000581041.1:c.330G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.330G>A
  hgvsp: ENST00000542523.1:c.330G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.330G>A
  hgvsp: ENST00000343388.7:c.330G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-22G>A
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-22G>A
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25774
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4556
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24334
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3109
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1147
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu142Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ

17-60613599-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60613599
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60613599
    reference: chr 17
allele count: 1
allele frequency: 8.3462700519138e-6
allele num: 119814
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.336T>C
  hgvsp: ENST00000343388.7:c.336T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.432T>C
  hgvsp: ENST00000326270.9:c.432T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.432T>C
  hgvsp: ENST00000346027.5:c.432T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.222T>C
  hgvsp: ENST00000580705.1:c.222T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.-16T>C
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.-16T>C
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.336T>C
  hgvsp: ENST00000581041.1:c.336T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.336T>C
  hgvsp: ENST00000542523.1:c.336T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4485
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23999
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25438
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1485
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3106
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser144Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
reference allele: T
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff

17-60613617-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60613617
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60613617
    reference: chr 17
allele count: 3
allele frequency: 2.533826584908529e-5
allele num: 118398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.240G>A
  hgvsp: ENSP00000464516.1:p.Met80Ile
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.354G>A
  hgvsp: ENSP00000442311.1:p.Met118Ile
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.450G>A
  hgvsp: ENSP00000316512.9:p.Met150Ile
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.3G>A
  hgvsp: ENSP00000463595.1:p.Met1?
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.354G>A
  hgvsp: ENSP00000340800.7:p.Met118Ile
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.3G>A
  hgvsp: ENSP00000463814.1:p.Met1?
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.450G>A
  hgvsp: ENSP00000275780.7:p.Met150Ile
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.354G>A
  hgvsp: ENSP00000462036.1:p.Met118Ile
  variant of: http://identifiers.org/hgnc/11842
canonical: false
consequence: start lost
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23013
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24768
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4163
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3092
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1374
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41040
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

17-60613631-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60613631
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60613631
    reference: chr 17
allele count: 30
allele frequency: 2.572678157962439e-4
allele num: 116610
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.17C>G
  hgvsp: ENSP00000463595.1:p.Ala6Gly
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.254C>G
  hgvsp: ENSP00000464516.1:p.Ala85Gly
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.17C>G
  hgvsp: ENSP00000463814.1:p.Ala6Gly
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.464C>G
  hgvsp: ENSP00000275780.7:p.Ala155Gly
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.464C>G
  hgvsp: ENSP00000316512.9:p.Ala155Gly
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.368C>G
  hgvsp: ENSP00000340800.7:p.Ala123Gly
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.368C>G
  hgvsp: ENSP00000442311.1:p.Ala123Gly
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.368C>G
  hgvsp: ENSP00000462036.1:p.Ala123Gly
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 24350
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2730
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21596
  bin: 2.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3806
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2274
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1009
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1172
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38974
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala155Gly
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: VQSLOD

17-60613632-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60613632
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60613632
    reference: chr 17
allele count: 2
allele frequency: 1.716207867096863e-5
allele num: 116536
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.18A>G
  hgvsp: ENST00000582809.1:c.18A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.465A>G
  hgvsp: ENST00000326270.9:c.465A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.18A>G
  hgvsp: ENST00000583843.1:c.18A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.369A>G
  hgvsp: ENST00000581041.1:c.369A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.465A>G
  hgvsp: ENST00000346027.5:c.465A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.369A>G
  hgvsp: ENST00000343388.7:c.369A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.255A>G
  hgvsp: ENST00000580705.1:c.255A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.369A>G
  hgvsp: ENST00000542523.1:c.369A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2268
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3694
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24456
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2787
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21510
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2370
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39190
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1292
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3082
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1170
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 818
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala155Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

17-60613640-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60613640
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60613640
    reference: chr 17
allele count: 1
allele frequency: 8.661758336942399e-6
allele num: 115450
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.377G>A
  hgvsp: ENSP00000462036.1:p.Arg126Gln
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.263G>A
  hgvsp: ENSP00000464516.1:p.Arg88Gln
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.26G>A
  hgvsp: ENSP00000463595.1:p.Arg9Gln
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.377G>A
  hgvsp: ENSP00000442311.1:p.Arg126Gln
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.473G>A
  hgvsp: ENSP00000275780.7:p.Arg158Gln
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.473G>A
  hgvsp: ENSP00000316512.9:p.Arg158Gln
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.377G>A
  hgvsp: ENSP00000340800.7:p.Arg126Gln
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.26G>A
  hgvsp: ENSP00000463814.1:p.Arg9Gln
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3525
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3266
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2871
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20492
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24678
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5088
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1087
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38776
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg158Gln
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP

17-60613641-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60613641
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60613641
    reference: chr 17
allele count: 1
allele frequency: 8.679651425198764e-6
allele num: 115212
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.27G>C
  hgvsp: ENST00000583843.1:c.27G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.378G>C
  hgvsp: ENST00000542523.1:c.378G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.27G>C
  hgvsp: ENST00000582809.1:c.27G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.378G>C
  hgvsp: ENST00000343388.7:c.378G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.474G>C
  hgvsp: ENST00000326270.9:c.474G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.264G>C
  hgvsp: ENST00000580705.1:c.264G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.474G>C
  hgvsp: ENST00000346027.5:c.474G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.378G>C
  hgvsp: ENST00000581041.1:c.378G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3009
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3416
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20293
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3464
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24612
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2308
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 919
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1073
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3074
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5312
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg158Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum

17-60613661-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60613661
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60613661
    reference: chr 17
allele count: 30
allele frequency: 2.728165581463024e-4
allele num: 109964
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.398C>T
  hgvsp: ENSP00000462036.1:p.Ala133Val
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.398C>T
  hgvsp: ENSP00000442311.1:p.Ala133Val
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.398C>T
  hgvsp: ENSP00000340800.7:p.Ala133Val
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.284C>T
  hgvsp: ENSP00000464516.1:p.Ala95Val
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.494C>T
  hgvsp: ENSP00000316512.9:p.Ala165Val
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.47C>T
  hgvsp: ENSP00000463814.1:p.Ala16Val
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.47C>T
  hgvsp: ENSP00000463595.1:p.Ala16Val
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.494C>T
  hgvsp: ENSP00000275780.7:p.Ala165Val
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2948
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17554
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22770
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5449
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2458
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5914
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3093
  bin: 9.75e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1286
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala165Val
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ

17-60613662-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60613662
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60613662
    reference: chr 17
allele count: 3
allele frequency: 2.750628060073717e-5
allele num: 109066
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.48G>A
  hgvsp: ENST00000583843.1:c.48G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.399G>A
  hgvsp: ENST00000343388.7:c.399G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.399G>A
  hgvsp: ENST00000542523.1:c.399G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.48G>A
  hgvsp: ENST00000582809.1:c.48G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.285G>A
  hgvsp: ENST00000580705.1:c.285G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.495G>A
  hgvsp: ENST00000326270.9:c.495G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.495G>A
  hgvsp: ENST00000346027.5:c.495G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.399G>A
  hgvsp: ENST00000581041.1:c.399G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 22258
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2559
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6443
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5872
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2862
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17104
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 851
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3893
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1331
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10222
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala165Ala
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: MQRankSum

17-60613666-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60613666
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60613665
    reference: chr 17
allele count: 1
allele frequency: 9.251549634563789e-6
allele num: 108090
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.407delG
  hgvsp: ENSP00000340800.7:p.Gly136GlufsTer47
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.293delG
  hgvsp: ENSP00000464516.1:p.Gly98GlufsTer47
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.407delG
  hgvsp: ENSP00000442311.1:p.Gly136GlufsTer47
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.407delG
  hgvsp: ENSP00000462036.1:p.Gly136GlufsTer15
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.56delG
  hgvsp: ENSP00000463595.1:p.Gly19GlufsTer47
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.56delG
  hgvsp: ENSP00000463814.1:p.Gly19GlufsTer?
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.503delG
  hgvsp: ENSP00000316512.9:p.Gly168GlufsTer47
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.503delG
  hgvsp: ENSP00000275780.7:p.Gly168GlufsTer47
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2657
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21606
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6472
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7151
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16657
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2566
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 702
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly168GlufsTer47
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: AG
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

17-60613672-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60613672
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60613672
    reference: chr 17
allele count: 1
allele frequency: 9.598034322570738e-6
allele num: 104188
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.409G>A
  hgvsp: ENSP00000442311.1:p.Ala137Thr
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.58G>A
  hgvsp: ENSP00000463814.1:p.Ala20Thr
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.409G>A
  hgvsp: ENSP00000462036.1:p.Ala137Thr
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.409G>A
  hgvsp: ENSP00000340800.7:p.Ala137Thr
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.58G>A
  hgvsp: ENSP00000463595.1:p.Ala20Thr
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.505G>A
  hgvsp: ENSP00000316512.9:p.Ala169Thr
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.505G>A
  hgvsp: ENSP00000275780.7:p.Ala169Thr
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.295G>A
  hgvsp: ENSP00000464516.1:p.Ala99Thr
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14589
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8300
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19175
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9528
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3046
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2423
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2154
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1142
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3079
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14597
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1705
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala169Thr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

17-60613676-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60613676
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60613676
    reference: chr 17
allele count: 1
allele frequency: 9.656983930778738e-6
allele num: 103552
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.509G>A
  hgvsp: ENSP00000316512.9:p.Gly170Asp
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.413G>A
  hgvsp: ENSP00000442311.1:p.Gly138Asp
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.413G>A
  hgvsp: ENSP00000462036.1:p.Gly138Asp
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.299G>A
  hgvsp: ENSP00000464516.1:p.Gly100Asp
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.509G>A
  hgvsp: ENSP00000275780.7:p.Gly170Asp
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.62G>A
  hgvsp: ENSP00000463595.1:p.Gly21Asp
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.413G>A
  hgvsp: ENSP00000340800.7:p.Gly138Asp
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.62G>A
  hgvsp: ENSP00000463814.1:p.Gly21Asp
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2890
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8582
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2269
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19474
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9740
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14112
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1746
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1046
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly170Asp
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

17-60613677-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60613677
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60613677
    reference: chr 17
allele count: 1
allele frequency: 9.70402717127608e-6
allele num: 103050
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.414C>T
  hgvsp: ENST00000343388.7:c.414C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.510C>T
  hgvsp: ENST00000326270.9:c.510C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.414C>T
  hgvsp: ENST00000542523.1:c.414C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.300C>T
  hgvsp: ENST00000580705.1:c.300C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.63C>T
  hgvsp: ENST00000583843.1:c.63C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.510C>T
  hgvsp: ENST00000346027.5:c.510C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.63C>T
  hgvsp: ENST00000582809.1:c.63C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.414C>T
  hgvsp: ENST00000581041.1:c.414C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13812
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2264
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9968
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19377
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8790
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1113
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3062
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly170Gly
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

17-60613705-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60613705
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60613705
    reference: chr 17
allele count: 1
allele frequency: 1.125644431436998e-5
allele num: 88838
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.435+7A>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.531+7A>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.531+7A>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.435+7A>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.84+7A>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.435+7A>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.321+7A>G
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.84+7A>G
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6679
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21804
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3196
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8168
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15026
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1346
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12657
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 5.25e1
  variant carriers: 0
hgvs: c.531+7A>G
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum

http://identifiers.org/exac.variant/17-60613706-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 60613706
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 60613705
    reference: chr 17
allele count: 4
allele frequency: 4.52028477794101e-5
allele num: 88490
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463595
  ensembl transcript: ENST00000582809
  gene symbol: TLK2
  hgvsc: ENST00000582809.1:c.84+11delA
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000442311
  ensembl transcript: ENST00000542523
  gene symbol: TLK2
  hgvsc: ENST00000542523.1:c.435+11delA
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000340800
  ensembl transcript: ENST00000343388
  gene symbol: TLK2
  hgvsc: ENST00000343388.7:c.435+11delA
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000464516
  ensembl transcript: ENST00000580705
  gene symbol: TLK2
  hgvsc: ENST00000580705.1:c.321+11delA
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000316512
  ensembl transcript: ENST00000326270
  gene symbol: TLK2
  hgvsc: ENST00000326270.9:c.531+11delA
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000275780
  ensembl transcript: ENST00000346027
  gene symbol: TLK2
  hgvsc: ENST00000346027.5:c.531+11delA
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000462036
  ensembl transcript: ENST00000581041
  gene symbol: TLK2
  hgvsc: ENST00000581041.1:c.435+11delA
  variant of: http://identifiers.org/hgnc/11842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146872
  ensembl protein: ENSP00000463814
  ensembl transcript: ENST00000583843
  gene symbol: TLK2
  hgvsc: ENST00000583843.1:c.84+11delA
  variant of: http://identifiers.org/hgnc/11842
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6677
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15082
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21810
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 1
reference allele: CA

GenotypeQuality
all individuals: 1305
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1092
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1053
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18632
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3632
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1139
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1821
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 814
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6563
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1210
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1735
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5294
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53402
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7750
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 6.405329233922624e-4
allele num: 7806
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14958
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9998
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.5e-2

MQ
type: SiteQuality
SIO_000300: 3.943e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.66e-2

FS
type: SiteQuality
SIO_000300: 2.546e0

MQRankSum
type: SiteQuality
SIO_000300: -7.14e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.348e0

QD
type: SiteQuality
SIO_000300: 7.25e0

VQSLOD
type: SiteQuality
SIO_000300: 1.4e0

DP
type: SiteQuality
SIO_000300: 1.549623e6

GenotypeQuality
all individuals: 3632
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1053
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4816
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1139
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 18632
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1305
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1735
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 814
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1210
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6563
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 3076
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1080
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7750
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.617767124826785e-5
allele num: 53402
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.281065846784525e-4
allele num: 7806
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5294
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.337077149351518e-4
allele num: 14958
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9998
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.4e0

MQ
type: SiteQuality
SIO_000300: 3.943e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.66e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.348e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.24e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.5e-2

FS
type: SiteQuality
SIO_000300: 2.546e0

QD
type: SiteQuality
SIO_000300: 7.25e0

MQRankSum
type: SiteQuality
SIO_000300: -7.14e-1

DP
type: SiteQuality
SIO_000300: 1.549623e6

GenotypeQuality
all individuals: 1139
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3076
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1735
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1210
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1092
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3632
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1821
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 814
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4816
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18632
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1305
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7750
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.872589041608928e-5
allele num: 53402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14958
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5294
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9998
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7806
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.25e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.5e-2

MQRankSum
type: SiteQuality
SIO_000300: -7.14e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.4e0

FS
type: SiteQuality
SIO_000300: 2.546e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.66e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -6.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.348e0

DP
type: SiteQuality
SIO_000300: 1.549623e6

MQ
type: SiteQuality
SIO_000300: 3.943e1

GenotypeQuality
all individuals: 818
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 985
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 639
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1223
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 988
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3340
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 14756
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1784
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2570
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 762
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6664
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13810
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44240
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4850
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.16795141322121e-4
allele num: 8562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.305e1

MQ
type: SiteQuality
SIO_000300: 3.928e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.63e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.850000000000001e-2

FS
type: SiteQuality
SIO_000300: 6.013e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.3e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.976e0

DP
type: SiteQuality
SIO_000300: 2.02506e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.85e-1

GenotypeQuality
all individuals: 483
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1512
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2120
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21471
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3933
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4089
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4936
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2286
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1038
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1685
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 803
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11290
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15938
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.559332605644784e-5
allele num: 64130
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8146
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9788
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.387e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.33e-1

MQ
type: SiteQuality
SIO_000300: 4.065e1

MQRankSum
type: SiteQuality
SIO_000300: 5.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.88e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -9.64e-1

DP
type: SiteQuality
SIO_000300: 1.817118e6

QD
type: SiteQuality
SIO_000300: 1.322e1

GenotypeQuality
all individuals: 2243
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5768
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 290
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 685
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4672
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4440
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19595
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1032
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1602
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2495
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 572
bin: 7.5e0
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11242
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15842
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.568479829349395e-5
allele num: 63756
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9654
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8074
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.721e0

MQRankSum
type: SiteQuality
SIO_000300: 3.33e-1

DP
type: SiteQuality
SIO_000300: 1.807014e6

QD
type: SiteQuality
SIO_000300: 9.880000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.75e0

MQ
type: SiteQuality
SIO_000300: 4.242e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.67e-1

GenotypeQuality
all individuals: 5114
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2141
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4440
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 685
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 983
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1496
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 687
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1602
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4672
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19595
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5768
bin: 9.75e1
variant carriers: 9

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.568479829349395e-5
allele num: 63756
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.668564312399929e-4
allele num: 11242
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 5.179200331468821e-4
allele num: 9654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8074
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15842
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.75e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

MQ
type: SiteQuality
SIO_000300: 4.242e1

QD
type: SiteQuality
SIO_000300: 9.880000000000001e0

DP
type: SiteQuality
SIO_000300: 1.807014e6

FS
type: SiteQuality
SIO_000300: 4.721e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.67e-1

GenotypeQuality
all individuals: 593
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3589
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5764
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 4574
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 710
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4388
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12910
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1541
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3039
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2218
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1492
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15826
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7964
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.75224939804841e-5
allele num: 63128
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9578
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.54e0

VQSLOD
type: SiteQuality
SIO_000300: -3.419e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

MQ
type: SiteQuality
SIO_000300: 3.814e1

MQRankSum
type: SiteQuality
SIO_000300: 3.2e-1

QD
type: SiteQuality
SIO_000300: 5.22e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e-1

DP
type: SiteQuality
SIO_000300: 1.786618e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.22e-1

GenotypeQuality
all individuals: 3912
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5269
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5762
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1775
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5613
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2191
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1034
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1495
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10185
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3680
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6484
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.056189269117026e-4
allele num: 9468
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15754
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11150
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62570
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.16e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 3.917e1

VQSLOD
type: SiteQuality
SIO_000300: -2.492e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.01e-1

QD
type: SiteQuality
SIO_000300: 1.474e1

DP
type: SiteQuality
SIO_000300: 1.788429e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -5.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.489e0

GenotypeQuality
all individuals: 1383
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 767
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5216
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3766
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6543
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 632
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 611
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7299
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9436
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8032
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14936
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10326
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.507027589796981e-5
allele num: 61472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5972
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.212e0

VQSLOD
type: SiteQuality
SIO_000300: -3.312e0

QD
type: SiteQuality
SIO_000300: 9.84e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.46e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

DP
type: SiteQuality
SIO_000300: 1.136907e6

MQ
type: SiteQuality
SIO_000300: 3.626e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.655e0

GenotypeQuality
all individuals: 3714
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5030
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4387
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27982
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3092
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8046
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5982
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.056412423410099e-4
allele num: 9466
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14998
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61678
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.019e0

VQSLOD
type: SiteQuality
SIO_000300: -3.39e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.408e0

MQ
type: SiteQuality
SIO_000300: 3.846e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.777e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.666e1

DP
type: SiteQuality
SIO_000300: 1.179727e6

GenotypeQuality
all individuals: 142
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3170
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1265
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.036269430051813e-4
allele num: 9650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15278
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62926
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10630
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8244
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6074
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.688e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.745e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.29e-1

DP
type: SiteQuality
SIO_000300: 1.314708e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.79e0

MQRankSum
type: SiteQuality
SIO_000300: -1.557e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

MQ
type: SiteQuality
SIO_000300: 4.337e1

QD
type: SiteQuality
SIO_000300: 1.357e1

GenotypeQuality
all individuals: 551
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 738
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49560
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2053
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 572
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9882
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15738
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.651162790697674e-5
allele num: 64500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11002
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6194
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.289e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.39e0

QD
type: SiteQuality
SIO_000300: 1.288e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.51e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.03e0

MQ
type: SiteQuality
SIO_000300: 3.802e1

MQRankSum
type: SiteQuality
SIO_000300: 4.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

DP
type: SiteQuality
SIO_000300: 1.376778e6

GenotypeQuality
all individuals: 402
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 685
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1375
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 109
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6208
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.541117001602762e-5
allele num: 64888
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9974
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11084
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.06e0

DP
type: SiteQuality
SIO_000300: 1.390581e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.558e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.618e0

QD
type: SiteQuality
SIO_000300: 1.081e1

VQSLOD
type: SiteQuality
SIO_000300: -2.245e0

MQRankSum
type: SiteQuality
SIO_000300: 1.46e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 4.973e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

GenotypeQuality
all individuals: 1533
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3717
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51001
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1375
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 693
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10034
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11164
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6226
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15966
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.534636751480924e-5
allele num: 65162
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.396947e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 4.23e1

MQRankSum
type: SiteQuality
SIO_000300: -2.074e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.6e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.9e-2

QD
type: SiteQuality
SIO_000300: 8.33e0

VQSLOD
type: SiteQuality
SIO_000300: -2.614e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.54e-1

GenotypeQuality
all individuals: 705
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3833
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1377
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 108
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 724
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11404
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.957713390759593e-4
allele num: 10216
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66080
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16344
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.207e0

MQ
type: SiteQuality
SIO_000300: 4.234e1

VQSLOD
type: SiteQuality
SIO_000300: -2.167e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.945e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.361e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e0

DP
type: SiteQuality
SIO_000300: 1.423585e6

QD
type: SiteQuality
SIO_000300: 1.327e1

GenotypeQuality
all individuals: 727
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52881
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1376
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3897
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.718395815170009e-5
allele num: 11470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10326
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6446
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.432571e6

QD
type: SiteQuality
SIO_000300: 1.102e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.268e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.053e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.217e0

MQ
type: SiteQuality
SIO_000300: 4.227e1

MQRankSum
type: SiteQuality
SIO_000300: 3.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

GenotypeQuality
all individuals: 597
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52910
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3905
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.071645415907711e-5
allele num: 16470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6484
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504755025881786e-5
allele num: 66456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.45e0

DP
type: SiteQuality
SIO_000300: 1.436468e6

MQRankSum
type: SiteQuality
SIO_000300: 8.3e-2

QD
type: SiteQuality
SIO_000300: 1.188e1

VQSLOD
type: SiteQuality
SIO_000300: -2.765e0

FS
type: SiteQuality
SIO_000300: 9.134e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.327e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.15e-1

MQ
type: SiteQuality
SIO_000300: 4.108e1

GenotypeQuality
all individuals: 595
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3909
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52908
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.071645415907711e-5
allele num: 16470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6480
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.513993379476377e-5
allele num: 66460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.436133e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.244e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.819e0

MQRankSum
type: SiteQuality
SIO_000300: 8.72e-1

MQ
type: SiteQuality
SIO_000300: 3.966e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.089e1

GenotypeQuality
all individuals: 139
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 704
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52038
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3855
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10212
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.0480370641307e-4
allele num: 16404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66192
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.06e-1

DP
type: SiteQuality
SIO_000300: 1.425386e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

QD
type: SiteQuality
SIO_000300: 1.022e1

MQ
type: SiteQuality
SIO_000300: 3.557e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.874e0

VQSLOD
type: SiteQuality
SIO_000300: -3.127e0

FS
type: SiteQuality
SIO_000300: 3.774e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.58e-1

GenotypeQuality
all individuals: 42
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1374
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 570
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3797
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10124
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.028559314334171e-5
allele num: 66038
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.748251748251748e-4
allele num: 11440
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6364
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16362
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.298e0

MQRankSum
type: SiteQuality
SIO_000300: -7.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.0e-1

FS
type: SiteQuality
SIO_000300: 2.77e0

DP
type: SiteQuality
SIO_000300: 1.420482e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQ
type: SiteQuality
SIO_000300: 3.564e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.18e-1

QD
type: SiteQuality
SIO_000300: 9.58e0

GenotypeQuality
all individuals: 552
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49631
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3645
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11332
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9874
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.529472943623627e-5
allele num: 65382
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16128
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6232
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.86e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e-1

DP
type: SiteQuality
SIO_000300: 1.402234e6

VQSLOD
type: SiteQuality
SIO_000300: -3.567e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQ
type: SiteQuality
SIO_000300: 3.437e1

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.7e-1

FS
type: SiteQuality
SIO_000300: 1.008e0

QD
type: SiteQuality
SIO_000300: 1.356e1

GenotypeQuality
all individuals: 347
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1370
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 287
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 649
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 580
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3503
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6090
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9656
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11118
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64540
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.350012700025399e-5
allele num: 15748
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 1.012e1

DP
type: SiteQuality
SIO_000300: 1.374848e6

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.144e0

MQ
type: SiteQuality
SIO_000300: 3.521e1

FS
type: SiteQuality
SIO_000300: 2.581e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.562e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

GenotypeQuality
all individuals: 331
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47311
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4342
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3485
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.350012700025399e-5
allele num: 15748
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11120
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9656
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6094
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.95e-1

FS
type: SiteQuality
SIO_000300: 3.428e0

VQSLOD
type: SiteQuality
SIO_000300: -3.834e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

DP
type: SiteQuality
SIO_000300: 1.375476e6

QD
type: SiteQuality
SIO_000300: 9.23e0

MQ
type: SiteQuality
SIO_000300: 3.451e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.47e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.69e0

GenotypeQuality
all individuals: 136
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1371
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 159
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4342
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47311
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3485
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.550243388211949e-5
allele num: 64506
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15748
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11120
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9656
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6094
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.69e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.47e0

FS
type: SiteQuality
SIO_000300: 3.428e0

QD
type: SiteQuality
SIO_000300: 9.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -3.834e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.04e-1

MQ
type: SiteQuality
SIO_000300: 3.451e1

MQRankSum
type: SiteQuality
SIO_000300: 3.95e-1

DP
type: SiteQuality
SIO_000300: 1.375476e6

GenotypeQuality
all individuals: 1369
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 542
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 47477
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6088
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11114
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.55115716324378e-5
allele num: 64468
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

MQ
type: SiteQuality
SIO_000300: 3.286e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.435e0

MQRankSum
type: SiteQuality
SIO_000300: -4.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.0e-2

QD
type: SiteQuality
SIO_000300: 7.75e0

FS
type: SiteQuality
SIO_000300: 8.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.0e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.963e0

DP
type: SiteQuality
SIO_000300: 1.376851e6

GenotypeQuality
all individuals: 105
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3385
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45878
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.047120418848168e-4
allele num: 9550
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15538
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10994
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6010
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63956
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.227e0

DP
type: SiteQuality
SIO_000300: 1.357002e6

MQ
type: SiteQuality
SIO_000300: 3.47e1

MQRankSum
type: SiteQuality
SIO_000300: -6.0e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.992e0

FS
type: SiteQuality
SIO_000300: 4.704e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.12e0

QD
type: SiteQuality
SIO_000300: 1.259e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.32e0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41256
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1222
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 667
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1369
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1287
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 597
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 7.5e0
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9330
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15022
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5824
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.603386351975372e-5
allele num: 62368
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.81e0

QD
type: SiteQuality
SIO_000300: 2.404e1

MQRankSum
type: SiteQuality
SIO_000300: 2.5e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.092e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

FS
type: SiteQuality
SIO_000300: 1.909e0

DP
type: SiteQuality
SIO_000300: 1.310942e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.47e-1

MQ
type: SiteQuality
SIO_000300: 3.502e1

GenotypeQuality
all individuals: 1391
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1368
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 200
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 592
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3109
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8816
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 692
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 487
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14930
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8346
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9298
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.611967244825585e-5
allele num: 62036
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5802
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.2e-1

DP
type: SiteQuality
SIO_000300: 1.299607e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

FS
type: SiteQuality
SIO_000300: 2.139e0

VQSLOD
type: SiteQuality
SIO_000300: -4.126e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.91e-1

MQ
type: SiteQuality
SIO_000300: 3.06e1

QD
type: SiteQuality
SIO_000300: 1.059e1

GenotypeQuality
all individuals: 100
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1368
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1182
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14064
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2441
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32322
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2187
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 627
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13942
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.147052076164258e-4
allele num: 8718
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9988
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8020
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58896
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.206911e6

FS
type: SiteQuality
SIO_000300: 2.102e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.32e-1

MQ
type: SiteQuality
SIO_000300: 3.092e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.44e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

QD
type: SiteQuality
SIO_000300: 6.15e0

VQSLOD
type: SiteQuality
SIO_000300: -4.527e0

GenotypeQuality
all individuals: 777
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2790
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17459
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2882
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27445
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1460
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.753278631040045e-5
allele num: 57036
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5366
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7788
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.238e0

FS
type: SiteQuality
SIO_000300: 6.879e0

QD
type: SiteQuality
SIO_000300: 1.222e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

MQ
type: SiteQuality
SIO_000300: 2.854e1

MQRankSum
type: SiteQuality
SIO_000300: -1.06e-1

DP
type: SiteQuality
SIO_000300: 1.146315e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.89e-1

GenotypeQuality
all individuals: 535
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3150
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6950
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 694
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1196
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5789
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27314
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 622
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 727
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6854
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4878
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7036
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11756
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 6.205013651030033e-4
allele num: 8058
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 676
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.179e1

DP
type: SiteQuality
SIO_000300: 8.76243e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.500000000000001e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.58e0

MQRankSum
type: SiteQuality
SIO_000300: -3.11e-1

MQ
type: SiteQuality
SIO_000300: 2.876e1

FS
type: SiteQuality
SIO_000300: 4.224e0

VQSLOD
type: SiteQuality
SIO_000300: -3.936e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.4e-2

GenotypeQuality
all individuals: 3011
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27314
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3150
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1364
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 535
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6636
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 727
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6854
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 676
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8058
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.015072744126063e-5
allele num: 49626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7036
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4878
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11756
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.11e-1

FS
type: SiteQuality
SIO_000300: 4.224e0

VQSLOD
type: SiteQuality
SIO_000300: -3.936e0

MQ
type: SiteQuality
SIO_000300: 2.876e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.500000000000001e-3

DP
type: SiteQuality
SIO_000300: 8.76243e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.58e0

QD
type: SiteQuality
SIO_000300: 1.179e1

GenotypeQuality
all individuals: 1019
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 655
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1359
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 27752
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6211
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3699
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6806
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11330
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4738
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.14696856597827e-5
allele num: 48228
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7776
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6806
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.86e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.67e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.4e-3

DP
type: SiteQuality
SIO_000300: 8.50604e5

VQSLOD
type: SiteQuality
SIO_000300: -4.68e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.48e-1

MQ
type: SiteQuality
SIO_000300: 3.112e1

QD
type: SiteQuality
SIO_000300: 1.008e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.33e-1

GenotypeQuality
all individuals: 3870
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1151
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1112
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 720
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 632
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 561
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3246
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4674
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7702
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11194
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.478415138971023e-4
allele num: 6764
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47744
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.01e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.44e0

VQSLOD
type: SiteQuality
SIO_000300: -5.024e0

MQ
type: SiteQuality
SIO_000300: 3.084e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.356e0

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

DP
type: SiteQuality
SIO_000300: 8.44327e5

QD
type: SiteQuality
SIO_000300: 1.142e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.224e0

GenotypeQuality
all individuals: 89
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4726
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1632
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 668
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 868
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4093
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1358
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7342
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46168
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.216589861751152e-5
allele num: 10850
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4534
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.9e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 3.057e1

DP
type: SiteQuality
SIO_000300: 8.14013e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.161e0

QD
type: SiteQuality
SIO_000300: 5.25e0

VQSLOD
type: SiteQuality
SIO_000300: -4.327e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.12e-2

GenotypeQuality
all individuals: 4913
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 690
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 320
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 26225
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1767
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 907
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3792
bin: 6.25e1
variant carriers: 4

GenotypeQuality
all individuals: 6135
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 130
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 549
bin: 6.75e1
variant carriers: 2

Other
type: Population
allele count: 1
allele frequency: 1.618122977346278e-3
allele num: 618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 8
allele frequency: 1.772264067346035e-3
allele num: 4514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6358
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 4.654626698938745e-4
allele num: 10742
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 6.856829402084476e-4
allele num: 7292
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.535155050660117e-4
allele num: 6514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 107
allele frequency: 2.335734555773849e-3
allele num: 45810
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.17e-2

DP
type: SiteQuality
SIO_000300: 8.08706e5

MQ
type: SiteQuality
SIO_000300: 2.835e1

MQRankSum
type: SiteQuality
SIO_000300: 8.400000000000001e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.986e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.095e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.71e-1

GenotypeQuality
all individuals: 127
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4211
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1356
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 126
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1587
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6057
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7509
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4156
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6418
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.402229268761411e-5
allele num: 41628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5826
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6018
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9760
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.491e0

DP
type: SiteQuality
SIO_000300: 7.70599e5

QD
type: SiteQuality
SIO_000300: 9.82e0

VQSLOD
type: SiteQuality
SIO_000300: -5.497e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.39e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

MQRankSum
type: SiteQuality
SIO_000300: 1.59e0

MQ
type: SiteQuality
SIO_000300: 2.717e1

GenotypeQuality
all individuals: 7488
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1270
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6169
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4204
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1357
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 55
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1276
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4148
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.403152936652888e-5
allele num: 41612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6020
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6412
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.023122570083896e-4
allele num: 9774
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5810
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.657e0

QD
type: SiteQuality
SIO_000300: 5.39e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.43e-2

MQ
type: SiteQuality
SIO_000300: 2.931e1

VQSLOD
type: SiteQuality
SIO_000300: -4.657e0

MQRankSum
type: SiteQuality
SIO_000300: -1.294e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.70151e5

ClippingRankSum
type: SiteQuality
SIO_000300: -4.88e-1

GenotypeQuality
all individuals: 1837
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 755
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 893
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2007
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3144
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 1234
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1266
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31032
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1508
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14888
num of homozygotes: 0

African
type: Population
allele count: 12
allele frequency: 1.164596273291925e-3
allele num: 10304
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.54e0

QD
type: SiteQuality
SIO_000300: 1.557e1

MQRankSum
type: SiteQuality
SIO_000300: -2.6e-2

MQ
type: SiteQuality
SIO_000300: 5.029e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.28e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -8.690000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.3e-1

DP
type: SiteQuality
SIO_000300: 1.603805e6

GenotypeQuality
all individuals: 1746
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 893
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1947
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2097
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1196
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 653
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1498
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6467
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3127
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65870
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.706008583690987e-5
allele num: 14912
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.51e0

VQSLOD
type: SiteQuality
SIO_000300: -1.124e0

MQ
type: SiteQuality
SIO_000300: 5.151e1

MQRankSum
type: SiteQuality
SIO_000300: 1.9e0

DP
type: SiteQuality
SIO_000300: 1.613824e6

QD
type: SiteQuality
SIO_000300: 1.216e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.22e-1

FS
type: SiteQuality
SIO_000300: 3.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.248e0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1700
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6598
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41457
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1586
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515289268721399e-5
allele num: 65994
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15078
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.4e-2

QD
type: SiteQuality
SIO_000300: 9.91e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

MQ
type: SiteQuality
SIO_000300: 4.428e1

VQSLOD
type: SiteQuality
SIO_000300: -3.735e0

FS
type: SiteQuality
SIO_000300: 4.058e0

DP
type: SiteQuality
SIO_000300: 1.649701e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.74e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.65e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.43e0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 773
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1147
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6659
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42676
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513134003147319e-5
allele num: 66088
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15268
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.825e0

MQ
type: SiteQuality
SIO_000300: 5.009e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.29e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.49e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.15e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.938e0

QD
type: SiteQuality
SIO_000300: 2.126e1

VQSLOD
type: SiteQuality
SIO_000300: -1.869e0

DP
type: SiteQuality
SIO_000300: 1.663132e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
all individuals: 132
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1047
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1722
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6710
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 612
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1598
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3126
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 9.658103148541626e-5
allele num: 10354
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66144
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.776e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.55e-1

DP
type: SiteQuality
SIO_000300: 1.669435e6

FS
type: SiteQuality
SIO_000300: 1.526e0

MQRankSum
type: SiteQuality
SIO_000300: 3.47e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.666e0

QD
type: SiteQuality
SIO_000300: 7.4e0

MQ
type: SiteQuality
SIO_000300: 4.743e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.6e-3

GenotypeQuality
all individuals: 176
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6729
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1732
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 614
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66180
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.460783046905285e-5
allele num: 15478
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

DP
type: SiteQuality
SIO_000300: 1.675193e6

VQSLOD
type: SiteQuality
SIO_000300: -1.042e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.443e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.996e0

FS
type: SiteQuality
SIO_000300: 2.985e0

QD
type: SiteQuality
SIO_000300: 1.549e1

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6865
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1750
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1616
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 629
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506614035616356e-5
allele num: 66374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.205e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.708e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.43e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.37e0

MQRankSum
type: SiteQuality
SIO_000300: -1.927e0

FS
type: SiteQuality
SIO_000300: 1.5623e1

DP
type: SiteQuality
SIO_000300: 1.690179e6

VQSLOD
type: SiteQuality
SIO_000300: -3.96e0

MQ
type: SiteQuality
SIO_000300: 4.969e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

GenotypeQuality
all individuals: 108
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1643
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1770
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6924
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3127
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 56
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66440
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.244555071561916e-4
allele num: 16070
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.5538e1

VQSLOD
type: SiteQuality
SIO_000300: -4.608e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.26e-2

MQ
type: SiteQuality
SIO_000300: 4.889e1

QD
type: SiteQuality
SIO_000300: 1.024e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.03e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.01e-1

DP
type: SiteQuality
SIO_000300: 1.69577e6

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 117
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3126
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 125
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1641
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 619
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157943492357573e-4
allele num: 8636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16208
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.644e0

FS
type: SiteQuality
SIO_000300: 5.027e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.68e-1

DP
type: SiteQuality
SIO_000300: 1.69902e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.203e0

QD
type: SiteQuality
SIO_000300: 6.04e0

MQ
type: SiteQuality
SIO_000300: 4.909e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -7.69e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.71e-1

GenotypeQuality
all individuals: 247
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6993
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44970
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1635
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16238
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.677542519958348e-5
allele num: 11524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66498
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.699817e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.931e0

MQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

MQ
type: SiteQuality
SIO_000300: 5.134e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.753e0

QD
type: SiteQuality
SIO_000300: 9.59e0

VQSLOD
type: SiteQuality
SIO_000300: -1.394e0

GenotypeQuality
all individuals: 246
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 622
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6997
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1635
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45004
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.153846153846154e-5
allele num: 16250
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.632055480639569e-5
allele num: 10382
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66498
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.259e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.94e-1

DP
type: SiteQuality
SIO_000300: 1.700045e6

MQ
type: SiteQuality
SIO_000300: 4.987e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.79e-1

FS
type: SiteQuality
SIO_000300: 1.739e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.277e0

QD
type: SiteQuality
SIO_000300: 1.138e1

GenotypeQuality
all individuals: 267
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45170
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 615
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3123
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1631
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.683570684265369e-5
allele num: 11516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.157e0

DP
type: SiteQuality
SIO_000300: 1.702937e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.556e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.69e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.562e0

FS
type: SiteQuality
SIO_000300: 1.007e0

QD
type: SiteQuality
SIO_000300: 1.794e1

MQ
type: SiteQuality
SIO_000300: 4.566e1

GenotypeQuality
all individuals: 91
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3123
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 614
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1761
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45183
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1624
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503262078710802e-5
allele num: 66522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.685079034219212e-5
allele num: 11514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.703593e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.216e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e0

QD
type: SiteQuality
SIO_000300: 1.262e1

MQRankSum
type: SiteQuality
SIO_000300: 2.95e-1

MQ
type: SiteQuality
SIO_000300: 4.888e1

FS
type: SiteQuality
SIO_000300: 1.836e0

VQSLOD
type: SiteQuality
SIO_000300: -1.613e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.38e-1

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44729
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 631
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1727
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1587
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3117
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 599
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6843
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66376
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.109481915933529e-5
allele num: 16368
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

FS
type: SiteQuality
SIO_000300: 1.922e0

MQ
type: SiteQuality
SIO_000300: 4.253e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.045e0

DP
type: SiteQuality
SIO_000300: 1.699489e6

VQSLOD
type: SiteQuality
SIO_000300: -2.707e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.042e0

MQRankSum
type: SiteQuality
SIO_000300: -1.119e0

QD
type: SiteQuality
SIO_000300: 1.373e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.64e-1

GenotypeQuality
all individuals: 772
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44300
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6822
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1582
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 595
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160362032954282e-4
allele num: 8618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16368
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66300
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.113e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.677e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.91e0

MQRankSum
type: SiteQuality
SIO_000300: -1.493e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.5e0

MQ
type: SiteQuality
SIO_000300: 4.127e1

VQSLOD
type: SiteQuality
SIO_000300: -3.898e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.696057e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

GenotypeQuality
all individuals: 115
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44383
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1726
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3116
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 117
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 774
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.658103148541626e-5
allele num: 10354
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66298
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16368
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.258e0

MQRankSum
type: SiteQuality
SIO_000300: 4.1e-1

QD
type: SiteQuality
SIO_000300: 1.135e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.3e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.273e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.12e0

MQ
type: SiteQuality
SIO_000300: 4.166e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.47e-1

DP
type: SiteQuality
SIO_000300: 1.696599e6

GenotypeQuality
all individuals: 178
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1715
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1578
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6792
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44302
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3111
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 237
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.108735491753207e-5
allele num: 16370
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160631383472609e-4
allele num: 8616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66284
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.4e-2

DP
type: SiteQuality
SIO_000300: 1.695912e6

FS
type: SiteQuality
SIO_000300: 1.0912e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

QD
type: SiteQuality
SIO_000300: 1.278e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.09e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.19e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.369e0

MQ
type: SiteQuality
SIO_000300: 4.096e1

GenotypeQuality
all individuals: 337
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1562
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43344
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1701
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6699
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66122
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.126700159294204e-5
allele num: 16322
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.315e0

VQSLOD
type: SiteQuality
SIO_000300: -3.467e0

DP
type: SiteQuality
SIO_000300: 1.687839e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.694e0

QD
type: SiteQuality
SIO_000300: 6.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.19e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.578e0

MQRankSum
type: SiteQuality
SIO_000300: 4.35e-1

MQ
type: SiteQuality
SIO_000300: 3.446e1

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 579
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6633
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42153
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1685
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1548
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10280
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.150061500615006e-5
allele num: 16260
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65930
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11366
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.222e0

MQ
type: SiteQuality
SIO_000300: 3.287e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.09e-1

QD
type: SiteQuality
SIO_000300: 8.41e0

MQRankSum
type: SiteQuality
SIO_000300: -5.84e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.535e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.82e-1

DP
type: SiteQuality
SIO_000300: 1.679469e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.23e-2

GenotypeQuality
all individuals: 1493
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 606
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6092
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 766
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2688
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.859988168014199e-5
allele num: 10142
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.786033220217896e-4
allele num: 11198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6472
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16052
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65206
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.082e0

DP
type: SiteQuality
SIO_000300: 1.650863e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.813e0

FS
type: SiteQuality
SIO_000300: 3.41e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.0e-3

MQ
type: SiteQuality
SIO_000300: 3.281e1

QD
type: SiteQuality
SIO_000300: 1.271e1

GenotypeQuality
all individuals: 723
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1292
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4176
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5351
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1224
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3111
bin: 9.75e1
variant carriers: 30

GenotypeQuality
all individuals: 233
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10026
num of homozygotes: 0

Latino
type: Population
allele count: 30
allele frequency: 2.738225629791895e-3
allele num: 10956
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6366
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64202
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15848
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.013e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.3e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.76e-1

MQ
type: SiteQuality
SIO_000300: 3.453e1

FS
type: SiteQuality
SIO_000300: 5.649999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

DP
type: SiteQuality
SIO_000300: 1.61563e6

QD
type: SiteQuality
SIO_000300: 1.232e1

VQSLOD
type: SiteQuality
SIO_000300: -2.404e0

GenotypeQuality
all individuals: 5348
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 745
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 990
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1092
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4282
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 717
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64148
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15854
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.997203914519672e-4
allele num: 10014
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10952
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8336
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.836e0

QD
type: SiteQuality
SIO_000300: 1.388e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.57e-1

MQ
type: SiteQuality
SIO_000300: 3.699e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.204e0

FS
type: SiteQuality
SIO_000300: 1.4425e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.71e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

DP
type: SiteQuality
SIO_000300: 1.612418e6

GenotypeQuality
all individuals: 413
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 872
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 912
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 803
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5080
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1084
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3074
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1213
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 813
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15686
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.005631536604988e-4
allele num: 9944
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8274
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10830
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6326
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.120000000000001e-1

MQ
type: SiteQuality
SIO_000300: 3.873e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.104e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.07e-1

FS
type: SiteQuality
SIO_000300: 3.07e0

QD
type: SiteQuality
SIO_000300: 1.083e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.75e-1

DP
type: SiteQuality
SIO_000300: 1.593207e6

GenotypeQuality
all individuals: 229
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 802
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 843
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1148
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1197
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5050
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38105
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 809
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 912
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63412
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9918
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8264
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10796
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15660
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.586294416243655e-4
allele num: 6304
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.22e-1

DP
type: SiteQuality
SIO_000300: 1.58757e6

VQSLOD
type: SiteQuality
SIO_000300: -3.427e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.83e0

FS
type: SiteQuality
SIO_000300: 3.891e0

MQ
type: SiteQuality
SIO_000300: 3.865e1

QD
type: SiteQuality
SIO_000300: 9.869999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.59e-1

GenotypeQuality
all individuals: 34659
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 900
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 944
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4079
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 519
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1283
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 841
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1135
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9450
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15018
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.044277360066834e-4
allele num: 9576
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10162
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.219512195121951e-3
allele num: 820
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 28
allele frequency: 4.628405183813806e-4
allele num: 60496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5976
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7916
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.126e1

DP
type: SiteQuality
SIO_000300: 1.506515e6

VQSLOD
type: SiteQuality
SIO_000300: -1.275e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.58e0

MQ
type: SiteQuality
SIO_000300: 4.231e1

GenotypeQuality
all individuals: 56
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1406
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 549
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 799
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 990
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 916
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1373
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1120
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33034
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3069
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 217
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.340842048806651e-4
allele num: 14916
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5924
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.952229299363058e-5
allele num: 10048
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59974
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.2e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.84e0

FS
type: SiteQuality
SIO_000300: 1.087e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 4.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.39e-1

QD
type: SiteQuality
SIO_000300: 1.031e1

MQ
type: SiteQuality
SIO_000300: 3.962e1

DP
type: SiteQuality
SIO_000300: 1.490628e6

MQRankSum
type: SiteQuality
SIO_000300: 9.51e-1

GenotypeQuality
all individuals: 11304
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3066
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 779
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1082
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1511
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1445
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3865
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32917
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 933
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7812
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5848
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9914
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.682255568265931e-5
allele num: 59444
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14794
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9474
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.469747e6

QD
type: SiteQuality
SIO_000300: 1.015e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e-1

MQ
type: SiteQuality
SIO_000300: 3.711e1

VQSLOD
type: SiteQuality
SIO_000300: 4.61e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.357e0

MQRankSum
type: SiteQuality
SIO_000300: -8.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.53e-1

GenotypeQuality
all individuals: 661
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1923
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2009
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1112
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26836
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 665
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 560
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3064
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 168
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5622
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.747457449411107e-5
allele num: 57226
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9236
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

QD
type: SiteQuality
SIO_000300: 1.078e1

DP
type: SiteQuality
SIO_000300: 1.402377e6

VQSLOD
type: SiteQuality
SIO_000300: -3.195e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 3.693e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.091e0

MQRankSum
type: SiteQuality
SIO_000300: -1.464e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.63e-1

GenotypeQuality
all individuals: 776
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1899
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1116
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15065
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28081
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 632
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2917
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3064
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 292
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2024
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 529
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9186
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5588
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.758581879572313e-5
allele num: 56864
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14300
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.019e0

MQRankSum
type: SiteQuality
SIO_000300: -6.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.154e0

DP
type: SiteQuality
SIO_000300: 1.392712e6

FS
type: SiteQuality
SIO_000300: 1.6406e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.47e0

MQ
type: SiteQuality
SIO_000300: 4.234e1

QD
type: SiteQuality
SIO_000300: 8.640000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.466e0

GenotypeQuality
all individuals: 1901
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2857
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15441
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2048
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28008
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1008
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 612
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1611
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14208
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9270
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9154
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.767096660187312e-5
allele num: 56590
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.85e-1

MQ
type: SiteQuality
SIO_000300: 4.429e1

QD
type: SiteQuality
SIO_000300: 1.119e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.38e-1

DP
type: SiteQuality
SIO_000300: 1.385799e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.018e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.303e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.82e-1

GenotypeQuality
all individuals: 215
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1590
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3984
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4260
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1077
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28651
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3058
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 350
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 674
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8242
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4820
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48634
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.559575795383656e-4
allele num: 6412
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.06e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.586e0

FS
type: SiteQuality
SIO_000300: 4.771e0

QD
type: SiteQuality
SIO_000300: 6.51e0

MQRankSum
type: SiteQuality
SIO_000300: 1.84e-1

DP
type: SiteQuality
SIO_000300: 1.111933e6

MQ
type: SiteQuality
SIO_000300: 5.203e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.0e0