http://identifiers.org/exac.variant/15-78557190-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78557190
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78557190
    reference: chr 15
allele count: 1
allele frequency: 1.112198594180977e-5
allele num: 89912
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.85C>A
  hgvsp: ENSP00000378321.3:p.Leu29Met
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.85C>A
  hgvsp: ENSP00000443962.1:p.Leu29Met
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.85C>A
  hgvsp: ENSP00000339581.3:p.Leu29Met
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.85C>A
  hgvsp: ENSP00000395191.2:p.Leu29Met
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000438263
  ensembl transcript: ENST00000489435
  gene symbol: DNAJA4
  hgvsc: ENST00000489435.2:c.172C>A
  hgvsp: ENSP00000438263.1:p.Leu58Met
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.85C>A
  hgvsp: ENSP00000441946.1:p.Leu29Met
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.85C>A
  hgvsp: ENSP00000407136.1:p.Leu29Met
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.172C>A
  hgvsp: ENSP00000378324.3:p.Leu58Met
  variant of: http://identifiers.org/hgnc/14885
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10123
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8518
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20981
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14324
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2469
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2784
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1763
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu58Met
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/15-78557199-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78557199
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78557199
    reference: chr 15
allele count: 6
allele frequency: 6.980315510261064e-5
allele num: 85956
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.94A>C
  hgvsp: ENSP00000441946.1:p.Lys32Gln
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000438263
  ensembl transcript: ENST00000489435
  gene symbol: DNAJA4
  hgvsc: ENST00000489435.2:c.181A>C
  hgvsp: ENSP00000438263.1:p.Lys61Gln
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.94A>C
  hgvsp: ENSP00000443962.1:p.Lys32Gln
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.94A>C
  hgvsp: ENSP00000339581.3:p.Lys32Gln
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.94A>C
  hgvsp: ENSP00000395191.2:p.Lys32Gln
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.94A>C
  hgvsp: ENSP00000407136.1:p.Lys32Gln
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.94A>C
  hgvsp: ENSP00000378321.3:p.Lys32Gln
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.181A>C
  hgvsp: ENSP00000378324.3:p.Lys61Gln
  variant of: http://identifiers.org/hgnc/14885
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2147
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7908
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2522
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16018
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17515
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12213
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2420
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1939
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Lys61Gln
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

15-78557201-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78557201
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78557201
    reference: chr 15
allele count: 2
allele frequency: 2.372985928193446e-5
allele num: 84282
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.96G>A
  hgvsp: ENST00000542636.1:c.96G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.183G>A
  hgvsp: ENST00000394855.3:c.183G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.96G>A
  hgvsp: ENST00000483802.2:c.96G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000438263
  ensembl transcript: ENST00000489435
  gene symbol: DNAJA4
  hgvsc: ENST00000489435.2:c.183G>A
  hgvsp: ENST00000489435.2:c.183G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.96G>A
  hgvsp: ENST00000423642.1:c.96G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.96G>A
  hgvsp: ENST00000343789.3:c.96G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.96G>A
  hgvsp: ENST00000394852.3:c.96G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.96G>A
  hgvsp: ENST00000440911.2:c.96G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14885
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7598
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16007
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2699
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16666
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13071
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1586
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20437
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Lys61Lys
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

15-78557203-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78557203
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78557203
    reference: chr 15
allele count: 15
allele frequency: 1.802537973466641e-4
allele num: 83216
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.98A>G
  hgvsp: ENSP00000339581.3:p.Tyr33Cys
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.98A>G
  hgvsp: ENSP00000378321.3:p.Tyr33Cys
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.185A>G
  hgvsp: ENSP00000378324.3:p.Tyr62Cys
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000438263
  ensembl transcript: ENST00000489435
  gene symbol: DNAJA4
  hgvsc: ENST00000489435.2:c.185A>G
  hgvsp: ENSP00000438263.1:p.Tyr62Cys
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.98A>G
  hgvsp: ENSP00000443962.1:p.Tyr33Cys
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.98A>G
  hgvsp: ENSP00000395191.2:p.Tyr33Cys
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.98A>G
  hgvsp: ENSP00000407136.1:p.Tyr33Cys
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.98A>G
  hgvsp: ENSP00000441946.1:p.Tyr33Cys
  variant of: http://identifiers.org/hgnc/14885
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13587
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15073
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17025
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2806
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7444
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1074
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19044
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25470
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Tyr62Cys
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ

15-78557204-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78557204
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78557204
    reference: chr 15
allele count: 2
allele frequency: 2.407839926801666e-5
allele num: 83062
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.99C>T
  hgvsp: ENST00000483802.2:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.99C>T
  hgvsp: ENST00000423642.1:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.99C>T
  hgvsp: ENST00000440911.2:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000438263
  ensembl transcript: ENST00000489435
  gene symbol: DNAJA4
  hgvsc: ENST00000489435.2:c.186C>T
  hgvsp: ENST00000489435.2:c.186C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.99C>T
  hgvsp: ENST00000394852.3:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.99C>T
  hgvsp: ENST00000343789.3:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.99C>T
  hgvsp: ENST00000542636.1:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.186C>T
  hgvsp: ENST00000394855.3:c.186C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14885
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2725
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13566
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15119
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17076
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2143
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7450
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19577
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2529
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2632
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Tyr62Tyr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

15-78557209-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78557209
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78557209
    reference: chr 15
allele count: 4
allele frequency: 5.009518084360284e-5
allele num: 79848
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.104C>T
  hgvsp: ENSP00000441946.1:p.Pro35Leu
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.191C>T
  hgvsp: ENSP00000378324.3:p.Pro64Leu
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.104C>T
  hgvsp: ENSP00000395191.2:p.Pro35Leu
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.104C>T
  hgvsp: ENSP00000339581.3:p.Pro35Leu
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000438263
  ensembl transcript: ENST00000489435
  gene symbol: DNAJA4
  hgvsc: ENST00000489435.2:c.191C>T
  hgvsp: ENSP00000438263.1:p.Pro64Leu
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.104C>T
  hgvsp: ENSP00000443962.1:p.Pro35Leu
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.104C>T
  hgvsp: ENSP00000407136.1:p.Pro35Leu
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.104C>T
  hgvsp: ENSP00000378321.3:p.Pro35Leu
  variant of: http://identifiers.org/hgnc/14885
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14833
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7208
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12634
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2748
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2423
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27729
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro64Leu
num of homozygotes: 1
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

15-78557213-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78557213
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78557213
    reference: chr 15
allele count: 36
allele frequency: 4.614911291149626e-4
allele num: 78008
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.108C>T
  hgvsp: ENST00000440911.2:c.108C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000438263
  ensembl transcript: ENST00000489435
  gene symbol: DNAJA4
  hgvsc: ENST00000489435.2:c.195C>T
  hgvsp: ENST00000489435.2:c.195C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.195C>T
  hgvsp: ENST00000394855.3:c.195C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.108C>T
  hgvsp: ENST00000483802.2:c.108C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.108C>T
  hgvsp: ENST00000542636.1:c.108C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.108C>T
  hgvsp: ENST00000343789.3:c.108C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.108C>T
  hgvsp: ENST00000423642.1:c.108C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.108C>T
  hgvsp: ENST00000394852.3:c.108C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14885
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2219
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11090
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 15818
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2082
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18986
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 6838
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2367
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29313
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp65Asp
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

15-78557245-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78557245
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78557245
    reference: chr 15
allele count: 2
allele frequency: 3.878524609238645e-5
allele num: 51566
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+8G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+8G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+8G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+8G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000438263
  ensembl transcript: ENST00000489435
  gene symbol: DNAJA4
  hgvsc: ENST00000489435.2:c.219+8G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+8G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+8G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+8G>A
  variant of: http://identifiers.org/hgnc/14885
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23814
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3653
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15867
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9792
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3006
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10321
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1196
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 7.75e1
  variant carriers: 0
hgvs: c.219+8G>A
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff

15-78557246-C-CGGCGCGG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78557246
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78557253
    reference: chr 15
allele count: 1
allele frequency: 1.957943376277558e-5
allele num: 51074
alternate allele: CGGCGCGG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+13_132+19dupGCGGGGC
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000438263
  ensembl transcript: ENST00000489435
  gene symbol: DNAJA4
  hgvsc: ENST00000489435.2:c.219+13_219+19dupGCGGGGC
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+13_132+19dupGCGGGGC
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+13_132+19dupGCGGGGC
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+13_132+19dupGCGGGGC
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+13_219+19dupGCGGGGC
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+13_132+19dupGCGGGGC
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+13_132+19dupGCGGGGC
  variant of: http://identifiers.org/hgnc/14885
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23947
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15746
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9849
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3045
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3632
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2233
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 809
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2013
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD

15-78557246-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78557246
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78557246
    reference: chr 15
allele count: 1
allele frequency: 1.957943376277558e-5
allele num: 51074
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+9C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+9C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+9C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+9C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+9C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000438263
  ensembl transcript: ENST00000489435
  gene symbol: DNAJA4
  hgvsc: ENST00000489435.2:c.219+9C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+9C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+9C>T
  variant of: http://identifiers.org/hgnc/14885
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9849
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15746
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23947
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3045
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3632
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2720
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5357
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 809
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10398
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

15-78557248-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78557248
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78557248
    reference: chr 15
allele count: 5
allele frequency: 9.936406995230525e-5
allele num: 50320
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+11G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+11G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000438263
  ensembl transcript: ENST00000489435
  gene symbol: DNAJA4
  hgvsc: ENST00000489435.2:c.219+11G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+11G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+11G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+11G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+11G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+11G>A
  variant of: http://identifiers.org/hgnc/14885
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24130
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3548
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10243
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1907
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15493
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3058
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1819
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1690
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10785
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/15-78557249-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78557249
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78557249
    reference: chr 15
allele count: 5
allele frequency: 1.028045069495847e-4
allele num: 48636
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000438263
  ensembl transcript: ENST00000489435
  gene symbol: DNAJA4
  hgvsc: ENST00000489435.2:c.219+12C>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+12C>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+12C>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+12C>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+12C>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+12C>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+12C>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+12C>A
  variant of: http://identifiers.org/hgnc/14885
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15229
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10915
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24033
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2912
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1923
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3342
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4997
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2290
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30087
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1116
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

15-78557249-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78557249
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78557249
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 48636
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+12C>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000438263
  ensembl transcript: ENST00000489435
  gene symbol: DNAJA4
  hgvsc: ENST00000489435.2:c.219+12C>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+12C>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+12C>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+12C>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+12C>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+12C>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+12C>G
  variant of: http://identifiers.org/hgnc/14885
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1923
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2912
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24033
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10915
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15229
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3342
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1870
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 765
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

15-78557250-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78557250
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78557250
    reference: chr 15
allele count: 2
allele frequency: 4.178505766337958e-5
allele num: 47864
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+13G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+13G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+13G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+13G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000438263
  ensembl transcript: ENST00000489435
  gene symbol: DNAJA4
  hgvsc: ENST00000489435.2:c.219+13G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+13G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+13G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+13G>A
  variant of: http://identifiers.org/hgnc/14885
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11324
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24070
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15020
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3276
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11908
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29729
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1889
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 765
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

15-78557252-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78557252
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78557252
    reference: chr 15
allele count: 2
allele frequency: 4.239443784975411e-5
allele num: 47176
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+15G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000438263
  ensembl transcript: ENST00000489435
  gene symbol: DNAJA4
  hgvsc: ENST00000489435.2:c.219+15G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+15G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+15G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+15G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+15G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+15G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+15G>A
  variant of: http://identifiers.org/hgnc/14885
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3266
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24213
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11684
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2827
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14759
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30280
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1796
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2623
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

15-78557254-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78557254
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78557254
    reference: chr 15
allele count: 2
allele frequency: 4.537616843633724e-5
allele num: 44076
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+17G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+17G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000438263
  ensembl transcript: ENST00000489435
  gene symbol: DNAJA4
  hgvsc: ENST00000489435.2:c.219+17G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+17G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+17G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+17G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+17G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+17G>A
  variant of: http://identifiers.org/hgnc/14885
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2868
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13609
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23553
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2417
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14088
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 971
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2926
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27048
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14220
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP

15-78557258-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78557258
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78557258
    reference: chr 15
allele count: 1
allele frequency: 2.364177975317982e-5
allele num: 42298
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+21C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+21C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+21C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+21C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+21C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+21C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+21C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000438263
  ensembl transcript: ENST00000489435
  gene symbol: DNAJA4
  hgvsc: ENST00000489435.2:c.219+21C>T
  variant of: http://identifiers.org/hgnc/14885
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23559
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2732
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14453
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1744
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13538
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3994
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1833
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15039
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26925
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 735
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

15-78557273-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78557273
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78557272
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 29586
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+40delG
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+40delG
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+40delG
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+40delG
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+40delG
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000438263
  ensembl transcript: ENST00000489435
  gene symbol: DNAJA4
  hgvsc: ENST00000489435.2:c.219+40delG
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+40delG
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+40delG
  variant of: http://identifiers.org/hgnc/14885
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2746
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23842
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8635
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19885
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2085
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1837
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1943
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: AG
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

15-78557275-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78557275
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78557275
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 29638
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+38G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+38G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000438263
  ensembl transcript: ENST00000489435
  gene symbol: DNAJA4
  hgvsc: ENST00000489435.2:c.219+38G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+38G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+38G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+38G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+38G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+38G>A
  variant of: http://identifiers.org/hgnc/14885
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23889
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8547
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19983
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6018
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2071
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1664
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4320
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum

15-78557276-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78557276
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78557276
    reference: chr 15
allele count: 1
allele frequency: 3.4331227684702e-5
allele num: 29128
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+39G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+39G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+39G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+39G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000438263
  ensembl transcript: ENST00000489435
  gene symbol: DNAJA4
  hgvsc: ENST00000489435.2:c.219+39G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+39G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+39G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+39G>A
  variant of: http://identifiers.org/hgnc/14885
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2765
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8325
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24033
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20046
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1945
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6248
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2115
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 4.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

15-78557277-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78557277
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78557277
    reference: chr 15
allele count: 1
allele frequency: 3.50852571749351e-5
allele num: 28502
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000438263
  ensembl transcript: ENST00000489435
  gene symbol: DNAJA4
  hgvsc: ENST00000489435.2:c.219+40G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+40G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+40G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+40G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+40G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+40G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+40G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+40G>A
  variant of: http://identifiers.org/hgnc/14885
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24199
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20077
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2833
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8084
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20623
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2114
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1187
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1818
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum

15-78557278-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78557278
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78557278
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 28094
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+41C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+41C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+41C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+41C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+41C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+41C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+41C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000438263
  ensembl transcript: ENST00000489435
  gene symbol: DNAJA4
  hgvsc: ENST00000489435.2:c.219+41C>T
  variant of: http://identifiers.org/hgnc/14885
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20108
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24333
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7885
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20578
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2057
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2110
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum

15-78557279-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78557279
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78557279
    reference: chr 15
allele count: 16
allele frequency: 5.763688760806917e-4
allele num: 27760
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+42C>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+42C>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+42C>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000438263
  ensembl transcript: ENST00000489435
  gene symbol: DNAJA4
  hgvsc: ENST00000489435.2:c.219+42C>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+42C>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+42C>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+42C>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+42C>G
  variant of: http://identifiers.org/hgnc/14885
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7743
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2924
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24479
  bin: 7.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 20095
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2126
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2264
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1625
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6814
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 1
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: FS

15-78557281-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78557281
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78557281
    reference: chr 15
allele count: 1
allele frequency: 3.84260682446972e-5
allele num: 26024
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+44A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+44A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+44A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000438263
  ensembl transcript: ENST00000489435
  gene symbol: DNAJA4
  hgvsc: ENST00000489435.2:c.219+44A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+44A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+44A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+44A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+44A>G
  variant of: http://identifiers.org/hgnc/14885
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20176
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6955
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25063
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2883
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7444
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7438
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1206
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum

15-78557785-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78557785
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78557785
    reference: chr 15
allele count: 51
allele frequency: 4.793233082706767e-3
allele num: 10640
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000438263
  ensembl transcript: ENST00000489435
  gene symbol: DNAJA4
  hgvsc: ENST00000489435.2:c.220-38G>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+548G>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+548G>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+548G>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+548G>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+548G>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+548G>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+548G>T
  variant of: http://identifiers.org/hgnc/14885
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 2.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2329
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 9.75e1
  variant carriers: 50
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3176
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1748
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ

15-78557791-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78557791
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78557791
    reference: chr 15
allele count: 5
allele frequency: 4.687792987061691e-4
allele num: 10666
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+554T>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000438263
  ensembl transcript: ENST00000489435
  gene symbol: DNAJA4
  hgvsc: ENST00000489435.2:c.220-32T>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+554T>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+554T>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+554T>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+554T>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+554T>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+554T>C
  variant of: http://identifiers.org/hgnc/14885
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2446
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1922
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 9.75e1
  variant carriers: 5
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum

15-78557821-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78557821
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78557821
    reference: chr 15
allele count: 1
allele frequency: 9.302325581395348e-5
allele num: 10750
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+584A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+584A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+584A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+584A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+584A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+584A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000438263
  ensembl transcript: ENST00000489435
  gene symbol: DNAJA4
  hgvsc: ENST00000489435.2:c.220-2A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+584A>G
  variant of: http://identifiers.org/hgnc/14885
canonical: false
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2579
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2138
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4004
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 9.75e1
  variant carriers: 1
hgvs: c.220-2A>G
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ

15-78557828-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78557828
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78557828
    reference: chr 15
allele count: 1
allele frequency: 9.29022668153103e-5
allele num: 10764
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000438263
  ensembl transcript: ENST00000489435
  gene symbol: DNAJA4
  hgvsc: ENST00000489435.2:c.225C>T
  hgvsp: ENST00000489435.2:c.225C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+591C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+591C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+591C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+591C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+591C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+591C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+591C>T
  variant of: http://identifiers.org/hgnc/14885
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2579
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2147
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
hgvs: p.His75His
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: FS

15-78557840-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78557840
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78557840
    reference: chr 15
allele count: 1
allele frequency: 9.28332714444857e-5
allele num: 10772
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+603A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+603A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000438263
  ensembl transcript: ENST00000489435
  gene symbol: DNAJA4
  hgvsc: ENST00000489435.2:c.237A>G
  hgvsp: ENST00000489435.2:c.237A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+603A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+603A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+603A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+603A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+603A>G
  variant of: http://identifiers.org/hgnc/14885
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2574
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2156
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4026
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1822
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 783
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gln79Gln
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ

15-78557846-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78557846
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78557846
    reference: chr 15
allele count: 1
allele frequency: 9.279881217520415e-5
allele num: 10776
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+609C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+609C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+609C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+609C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+609C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+609C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000438263
  ensembl transcript: ENST00000489435
  gene symbol: DNAJA4
  hgvsc: ENST00000489435.2:c.243C>T
  hgvsp: ENST00000489435.2:c.243C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+609C>T
  variant of: http://identifiers.org/hgnc/14885
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2159
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1866
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asp81Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

15-78557920-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78557920
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78557920
    reference: chr 15
allele count: 6
allele frequency: 5.572065378900445e-4
allele num: 10768
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+683T>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+683T>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+683T>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+683T>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+683T>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+683T>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+683T>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000438263
  ensembl transcript: ENST00000489435
  gene symbol: DNAJA4
  hgvsc: ENST00000489435.2:c.317T>G
  hgvsp: ENSP00000438263.1:p.Leu106Arg
  variant of: http://identifiers.org/hgnc/14885
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2156
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4026
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu106Arg
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ

15-78557965-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78557965
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78557965
    reference: chr 15
allele count: 2
allele frequency: 1.857355126300148e-4
allele num: 10768
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+728T>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+728T>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000438263
  ensembl transcript: ENST00000489435
  gene symbol: DNAJA4
  hgvsc: ENST00000489435.2:c.362T>A
  hgvsp: ENSP00000438263.1:p.Ile121Asn
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+728T>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+728T>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+728T>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+728T>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+728T>A
  variant of: http://identifiers.org/hgnc/14885
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2160
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile121Asn
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS

15-78557979-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78557979
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78557979
    reference: chr 15
allele count: 20
allele frequency: 1.857700167193015e-3
allele num: 10766
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+742A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+742A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+742A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+742A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+742A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+742A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000438263
  ensembl transcript: ENST00000489435
  gene symbol: DNAJA4
  hgvsc: ENST00000489435.2:c.376A>G
  hgvsp: ENSP00000438263.1:p.Ser126Gly
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+742A>G
  variant of: http://identifiers.org/hgnc/14885
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2160
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4018
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser126Gly
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/15-78557991-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78557991
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78557991
    reference: chr 15
allele count: 1
allele frequency: 9.29022668153103e-5
allele num: 10764
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+754A>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+754A>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+754A>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+754A>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+754A>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+754A>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+754A>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000438263
  ensembl transcript: ENST00000489435
  gene symbol: DNAJA4
  hgvsc: ENST00000489435.2:c.388A>C
  hgvsp: ENSP00000438263.1:p.Ile130Leu
  variant of: http://identifiers.org/hgnc/14885
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2556
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1604
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ile130Leu
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

15-78557993-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78557993
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78557993
    reference: chr 15
allele count: 2
allele frequency: 1.858045336306206e-4
allele num: 10764
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000438263
  ensembl transcript: ENST00000489435
  gene symbol: DNAJA4
  hgvsc: ENST00000489435.2:c.390C>T
  hgvsp: ENST00000489435.2:c.390C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+756C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+756C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+756C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+756C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+756C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+756C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+756C>T
  variant of: http://identifiers.org/hgnc/14885
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2553
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4024
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ile130Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff

15-78558009-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78558009
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78558009
    reference: chr 15
allele count: 1
allele frequency: 9.307520476545048e-5
allele num: 10744
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+772G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+772G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+772G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+772G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000438263
  ensembl transcript: ENST00000489435
  gene symbol: DNAJA4
  hgvsc: ENST00000489435.2:c.406G>A
  hgvsp: ENSP00000438263.1:p.Asp136Asn
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+772G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+772G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+772G>A
  variant of: http://identifiers.org/hgnc/14885
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2519
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3981
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1728
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp136Asn
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Other
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

15-78558042-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78558042
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78558042
    reference: chr 15
allele count: 1
allele frequency: 9.412650602409639e-5
allele num: 10624
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+805C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+805C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+805C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+805C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+805C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+805C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000438263
  ensembl transcript: ENST00000489435
  gene symbol: DNAJA4
  hgvsc: ENST00000489435.2:c.*19C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+805C>T
  variant of: http://identifiers.org/hgnc/14885
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2071
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2099
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

15-78558046-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78558046
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78558046
    reference: chr 15
allele count: 6
allele frequency: 5.65078169146732e-4
allele num: 10618
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+809G>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+809G>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+809G>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000438263
  ensembl transcript: ENST00000489435
  gene symbol: DNAJA4
  hgvsc: ENST00000489435.2:c.*23G>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+809G>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+809G>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+809G>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+809G>C
  variant of: http://identifiers.org/hgnc/14885
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2214
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1984
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1865
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3135
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD

15-78558067-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78558067
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78558066
    reference: chr 15
allele count: 1
allele frequency: 9.582215408202377e-5
allele num: 10436
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+833delC
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+833delC
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+833delC
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+833delC
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+833delC
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000438263
  ensembl transcript: ENST00000489435
  gene symbol: DNAJA4
  hgvsc: ENST00000489435.2:c.*47delC
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+833delC
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+833delC
  variant of: http://identifiers.org/hgnc/14885
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2496
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1786
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
reference allele: TC
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

15-78558071-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78558071
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78558071
    reference: chr 15
allele count: 1
allele frequency: 9.67305088024763e-5
allele num: 10338
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+834G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+834G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+834G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000438263
  ensembl transcript: ENST00000489435
  gene symbol: DNAJA4
  hgvsc: ENST00000489435.2:c.*48G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+834G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+834G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+834G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+834G>A
  variant of: http://identifiers.org/hgnc/14885
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2585
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

15-78558536-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78558536
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78558536
    reference: chr 15
allele count: 3
allele frequency: 2.553582676495123e-5
allele num: 117482
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+1299G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+1299G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+1299G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+1299G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+1299G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000413499
  ensembl transcript: ENST00000446172
  gene symbol: DNAJA4
  hgvsc: ENST00000446172.2:c.-49G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+1299G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+1299G>A
  variant of: http://identifiers.org/hgnc/14885
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2913
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5173
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13963
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6787
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10161
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14047
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2184
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2982
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1578
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1305
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4230
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum

15-78558544-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78558544
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78558544
    reference: chr 15
allele count: 1
allele frequency: 8.502389171357152e-6
allele num: 117614
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+1307G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+1307G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+1307G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+1307G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+1307G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+1307G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000413499
  ensembl transcript: ENST00000446172
  gene symbol: DNAJA4
  hgvsc: ENST00000446172.2:c.-41G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+1307G>A
  variant of: http://identifiers.org/hgnc/14885
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18433
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6944
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4889
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14416
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5474
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2917
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2667
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1484
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2039
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 866
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1863
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5281
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

15-78558548-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78558548
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78558548
    reference: chr 15
allele count: 1
allele frequency: 8.488531993277082e-6
allele num: 117806
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+1311G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000413499
  ensembl transcript: ENST00000446172
  gene symbol: DNAJA4
  hgvsc: ENST00000446172.2:c.-37G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+1311G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+1311G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+1311G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+1311G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+1311G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+1311G>A
  variant of: http://identifiers.org/hgnc/14885
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3423
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7072
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20523
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2918
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14930
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4242
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2151
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5983
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1366
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1047
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1582
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2207
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum

15-78558554-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78558554
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78558554
    reference: chr 15
allele count: 1
allele frequency: 8.470699849221542e-6
allele num: 118054
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+1317A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+1317A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+1317A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000413499
  ensembl transcript: ENST00000446172
  gene symbol: DNAJA4
  hgvsc: ENST00000446172.2:c.-31A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+1317A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+1317A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+1317A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+1317A>G
  variant of: http://identifiers.org/hgnc/14885
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7191
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22635
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3094
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2926
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15540
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 865
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1370
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

15-78558557-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78558557
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78558557
    reference: chr 15
allele count: 2
allele frequency: 1.691818366380186e-5
allele num: 118216
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000413499
  ensembl transcript: ENST00000446172
  gene symbol: DNAJA4
  hgvsc: ENST00000446172.2:c.-28T>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+1320T>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+1320T>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+1320T>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+1320T>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+1320T>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+1320T>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+1320T>A
  variant of: http://identifiers.org/hgnc/14885
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15793
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7244
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2682
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2932
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23210
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35539
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1403
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 864
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

15-78558567-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78558567
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78558567
    reference: chr 15
allele count: 1
allele frequency: 8.421619982819896e-6
allele num: 118742
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+1330A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+1330A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000413499
  ensembl transcript: ENST00000446172
  gene symbol: DNAJA4
  hgvsc: ENST00000446172.2:c.-18A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+1330A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+1330A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+1330A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+1330A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+1330A>G
  variant of: http://identifiers.org/hgnc/14885
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16573
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2995
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24143
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7528
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6174
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1106
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

15-78558572-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78558572
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78558572
    reference: chr 15
allele count: 3
allele frequency: 2.52215290972374e-5
allele num: 118946
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+1335G>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000413499
  ensembl transcript: ENST00000446172
  gene symbol: DNAJA4
  hgvsc: ENST00000446172.2:c.-13G>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+1335G>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+1335G>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+1335G>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+1335G>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+1335G>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+1335G>C
  variant of: http://identifiers.org/hgnc/14885
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16855
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24260
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7692
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3110
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6212
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2251
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP

15-78558572-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78558572
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78558572
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 118946
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+1335G>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+1335G>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+1335G>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000413499
  ensembl transcript: ENST00000446172
  gene symbol: DNAJA4
  hgvsc: ENST00000446172.2:c.-13G>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+1335G>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+1335G>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+1335G>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+1335G>T
  variant of: http://identifiers.org/hgnc/14885
canonical: false
consequence: 5' UTR
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24260
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16855
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3110
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7692
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 873
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2251
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1505
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD

15-78558579-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78558579
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78558579
    reference: chr 15
allele count: 2
allele frequency: 1.679232926399221e-5
allele num: 119102
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+1342A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+1342A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+1342A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+1342A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+1342A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000413499
  ensembl transcript: ENST00000446172
  gene symbol: DNAJA4
  hgvsc: ENST00000446172.2:c.-6A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+1342A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+1342A>G
  variant of: http://identifiers.org/hgnc/14885
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24293
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3217
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17051
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7688
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1502
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 871
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

15-78558584-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78558584
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78558584
    reference: chr 15
allele count: 1
allele frequency: 8.364980844193866e-6
allele num: 119546
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+1347C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+1347C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+1347C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+1347C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+1347C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000413499
  ensembl transcript: ENST00000446172
  gene symbol: DNAJA4
  hgvsc: ENST00000446172.2:c.-1C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+1347C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+1347C>T
  variant of: http://identifiers.org/hgnc/14885
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23767
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3186
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7433
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16695
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37424
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum

15-78558584-CAT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78558584
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78558582
    reference: chr 15
allele count: 3844
allele frequency: 3.215498636508123e-2
allele num: 119546
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+1348_219+1349delAT
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+1348_132+1349delAT
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+1348_132+1349delAT
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+1348_132+1349delAT
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: start_lost
  consequence: frameshift_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000413499
  ensembl transcript: ENST00000446172
  gene symbol: DNAJA4
  hgvsc: ENST00000446172.2:c.1_2delAT
  hgvsp: ENSP00000413499.2:p.Met1?
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+1348_132+1349delAT
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+1348_132+1349delAT
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+1348_132+1349delAT
  variant of: http://identifiers.org/hgnc/14885
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 6.25e1
  variant carriers: 181
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 1.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 6.75e1
  variant carriers: 130
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 1.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.75e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 16695
  bin: 2.75e1
  variant carriers: 237
genotype depth: GenotypeDepth
  all individuals: 23767
  bin: 2.25e1
  variant carriers: 125
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.25e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 4.25e1
  variant carriers: 492
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 4.75e1
  variant carriers: 473
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 9.75e1
  variant carriers: 257
genotype depth: GenotypeDepth
  all individuals: 7433
  bin: 3.25e1
  variant carriers: 417
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.25e1
  variant carriers: 102
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 5.25e1
  variant carriers: 346
genotype depth: GenotypeDepth
  all individuals: 3186
  bin: 3.75e1
  variant carriers: 463
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 5.75e1
  variant carriers: 268
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1754
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 5979
  bin: 6.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 104
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
reference allele: CAT
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

15-78558586-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78558586
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78558586
    reference: chr 15
allele count: 1
allele frequency: 8.825346394845998e-6
allele num: 113310
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+1349T>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000413499
  ensembl transcript: ENST00000446172
  gene symbol: DNAJA4
  hgvsc: ENST00000446172.2:c.2T>G
  hgvsp: ENSP00000413499.2:p.Met1?
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+1349T>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+1349T>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+1349T>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+1349T>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+1349T>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+1349T>G
  variant of: http://identifiers.org/hgnc/14885
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16537
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7063
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2800
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23685
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2104
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5029
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ

15-78558597-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78558597
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78558597
    reference: chr 15
allele count: 1
allele frequency: 8.349336227769892e-6
allele num: 119770
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+1360C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+1360C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+1360C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+1360C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000413499
  ensembl transcript: ENST00000446172
  gene symbol: DNAJA4
  hgvsc: ENST00000446172.2:c.13C>T
  hgvsp: ENST00000446172.2:c.13C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+1360C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+1360C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+1360C>T
  variant of: http://identifiers.org/hgnc/14885
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24180
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18416
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7849
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2936
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2233
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6521
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu5Leu
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

15-78558612-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78558612
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78558612
    reference: chr 15
allele count: 1
allele frequency: 8.346548702111677e-6
allele num: 119810
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+1375G>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+1375G>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+1375G>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+1375G>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+1375G>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000413499
  ensembl transcript: ENST00000446172
  gene symbol: DNAJA4
  hgvsc: ENST00000446172.2:c.28G>C
  hgvsp: ENSP00000413499.2:p.Gly10Arg
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+1375G>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+1375G>C
  variant of: http://identifiers.org/hgnc/14885
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18691
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24043
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2937
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7857
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1867
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2215
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly10Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum

15-78558620-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78558620
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78558620
    reference: chr 15
allele count: 1
allele frequency: 8.347942232239753e-6
allele num: 119790
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+1383C>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+1383C>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+1383C>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+1383C>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+1383C>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000413499
  ensembl transcript: ENST00000446172
  gene symbol: DNAJA4
  hgvsc: ENST00000446172.2:c.36C>G
  hgvsp: ENSP00000413499.2:p.Ile12Met
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+1383C>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+1383C>G
  variant of: http://identifiers.org/hgnc/14885
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23930
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2928
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7857
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18745
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6498
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2208
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ile12Met
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

15-78558624-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78558624
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78558624
    reference: chr 15
allele count: 1
allele frequency: 8.351009637065121e-6
allele num: 119746
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+1387G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+1387G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000413499
  ensembl transcript: ENST00000446172
  gene symbol: DNAJA4
  hgvsc: ENST00000446172.2:c.40G>A
  hgvsp: ENSP00000413499.2:p.Ala14Thr
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+1387G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+1387G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+1387G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+1387G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+1387G>A
  variant of: http://identifiers.org/hgnc/14885
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23836
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7861
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2929
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18756
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5222
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala14Thr
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

15-78558625-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78558625
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78558625
    reference: chr 15
allele count: 1
allele frequency: 8.350870160670742e-6
allele num: 119748
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+1388C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+1388C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+1388C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+1388C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+1388C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000413499
  ensembl transcript: ENST00000446172
  gene symbol: DNAJA4
  hgvsc: ENST00000446172.2:c.41C>T
  hgvsp: ENSP00000413499.2:p.Ala14Val
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+1388C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+1388C>T
  variant of: http://identifiers.org/hgnc/14885
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2930
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23838
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7856
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18765
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40349
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1846
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala14Val
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

15-78558630-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78558630
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78558630
    reference: chr 15
allele count: 1065
allele frequency: 8.89694579963911e-3
allele num: 119704
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000413499
  ensembl transcript: ENST00000446172
  gene symbol: DNAJA4
  hgvsc: ENST00000446172.2:c.46A>G
  hgvsp: ENSP00000413499.2:p.Thr16Ala
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+1393A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+1393A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+1393A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+1393A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+1393A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+1393A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+1393A>G
  variant of: http://identifiers.org/hgnc/14885
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 2956
  bin: 3.75e1
  variant carriers: 103
genotype depth: GenotypeDepth
  all individuals: 23411
  bin: 2.25e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 5.75e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 7758
  bin: 3.25e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 4.75e1
  variant carriers: 100
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.25e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.25e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 9.75e1
  variant carriers: 125
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 4.25e1
  variant carriers: 106
genotype depth: GenotypeDepth
  all individuals: 18614
  bin: 2.75e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 9.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 5969
  bin: 9.75e1
  variant carriers: 990
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1353
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6348
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Thr16Ala
num of homozygotes: 58
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum

http://identifiers.org/exac.variant/15-78558638-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78558638
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78558638
    reference: chr 15
allele count: 8
allele frequency: 6.693104429161856e-5
allele num: 119526
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+1401A>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+1401A>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+1401A>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+1401A>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+1401A>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+1401A>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000413499
  ensembl transcript: ENST00000446172
  gene symbol: DNAJA4
  hgvsc: ENST00000446172.2:c.51+3A>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+1401A>C
  variant of: http://identifiers.org/hgnc/14885
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2920
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7858
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18940
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22975
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1762
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5121
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: c.51+3A>C
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

15-78558641-TTCATGCC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78558641
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78558634
    reference: chr 15
allele count: 1
allele frequency: 8.372684952610603e-6
allele num: 119436
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000413499
  ensembl transcript: ENST00000446172
  gene symbol: DNAJA4
  hgvsc: ENST00000446172.2:c.51+9_51+15delATGCCTC
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  variant of: http://identifiers.org/hgnc/14885
canonical: false
consequence: splice region
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18878
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7862
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2917
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22655
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1213
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5114
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1368
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2094
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: c.51+9_51+15delATGCCTC
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: TTCATGCC
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

15-78558646-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78558646
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78558646
    reference: chr 15
allele count: 1
allele frequency: 8.37885846432282e-6
allele num: 119348
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+1409G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+1409G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+1409G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+1409G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+1409G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000413499
  ensembl transcript: ENST00000446172
  gene symbol: DNAJA4
  hgvsc: ENST00000446172.2:c.51+11G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+1409G>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+1409G>A
  variant of: http://identifiers.org/hgnc/14885
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22177
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18783
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2920
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1664
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7854
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5110
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1738
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

15-78558648-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78558648
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78558648
    reference: chr 15
allele count: 1
allele frequency: 8.383635144198524e-6
allele num: 119280
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+1411C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+1411C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+1411C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+1411C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+1411C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+1411C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+1411C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000413499
  ensembl transcript: ENST00000446172
  gene symbol: DNAJA4
  hgvsc: ENST00000446172.2:c.51+13C>T
  variant of: http://identifiers.org/hgnc/14885
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 21886
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18758
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2914
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7850
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2061
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1726
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38884
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

15-78558657-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78558657
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78558657
    reference: chr 15
allele count: 1
allele frequency: 8.403361344537815e-6
allele num: 119000
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+1420T>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+1420T>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+1420T>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+1420T>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000413499
  ensembl transcript: ENST00000446172
  gene symbol: DNAJA4
  hgvsc: ENST00000446172.2:c.51+22T>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+1420T>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+1420T>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+1420T>C
  variant of: http://identifiers.org/hgnc/14885
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7717
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18297
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2903
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3718
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19598
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1329
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36246
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

15-78558661-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78558661
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78558661
    reference: chr 15
allele count: 1
allele frequency: 8.411419342899921e-6
allele num: 118886
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+1424G>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+1424G>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+1424G>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+1424G>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+1424G>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000413499
  ensembl transcript: ENST00000446172
  gene symbol: DNAJA4
  hgvsc: ENST00000446172.2:c.51+26G>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+1424G>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+1424G>C
  variant of: http://identifiers.org/hgnc/14885
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2498
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7663
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17764
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17959
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4871
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 938
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3774
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5105
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1953
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP

15-78558676-GC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78558676
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78558675
    reference: chr 15
allele count: 1
allele frequency: 8.477162524159914e-6
allele num: 117964
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+1440delC
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+1440delC
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+1440delC
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+1440delC
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000413499
  ensembl transcript: ENST00000446172
  gene symbol: DNAJA4
  hgvsc: ENST00000446172.2:c.51+42delC
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+1440delC
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+1440delC
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+1440delC
  variant of: http://identifiers.org/hgnc/14885
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6620
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2832
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12061
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6825
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11518
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13456
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5853
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3043
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5382
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2051
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19044
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: African
reference allele: GC
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

15-78558680-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78558680
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78558680
    reference: chr 15
allele count: 1
allele frequency: 8.538542983025377e-6
allele num: 117116
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000413499
  ensembl transcript: ENST00000446172
  gene symbol: DNAJA4
  hgvsc: ENST00000446172.2:c.51+45T>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+1443T>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+1443T>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+1443T>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+1443T>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+1443T>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+1443T>C
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+1443T>C
  variant of: http://identifiers.org/hgnc/14885
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14628
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6765
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2732
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9853
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5772
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13286
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6454
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4076
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3163
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5098
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5460
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

15-78558685-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78558685
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78558685
    reference: chr 15
allele count: 2
allele frequency: 1.750240658090488e-5
allele num: 114270
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.132+1448C>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.132+1448C>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.132+1448C>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.132+1448C>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.219+1448C>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.132+1448C>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000413499
  ensembl transcript: ENST00000446172
  gene symbol: DNAJA4
  hgvsc: ENST00000446172.2:c.51+50C>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.132+1448C>G
  variant of: http://identifiers.org/hgnc/14885
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6851
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5215
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14899
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13041
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10284
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2574
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3637
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2996
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6398
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1610
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1710
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD

15-78562789-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78562789
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78562789
    reference: chr 15
allele count: 1
allele frequency: 8.750437521876094e-6
allele num: 114280
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.220-50C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000413499
  ensembl transcript: ENST00000446172
  gene symbol: DNAJA4
  hgvsc: ENST00000446172.2:c.52-50C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.133-50C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.133-50C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.133-2648C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.133-50C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140403
  ensembl transcript: ENST00000485075
  gene symbol: DNAJA4
  hgvsc: ENST00000485075.1:n.431C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.133-50C>T
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.133-50C>T
  variant of: http://identifiers.org/hgnc/14885
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2275
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2109
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6961
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9548
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7393
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3561
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5639
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4046
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1402
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2423
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/15-78562794-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78562794
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78562794
    reference: chr 15
allele count: 6
allele frequency: 5.297358383952536e-5
allele num: 113264
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.133-45C>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000413499
  ensembl transcript: ENST00000446172
  gene symbol: DNAJA4
  hgvsc: ENST00000446172.2:c.52-45C>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.220-45C>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.133-45C>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140403
  ensembl transcript: ENST00000485075
  gene symbol: DNAJA4
  hgvsc: ENST00000485075.1:n.436C>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.133-45C>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.133-2643C>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.133-45C>A
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.133-45C>A
  variant of: http://identifiers.org/hgnc/14885
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5643
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4078
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7426
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3539
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7120
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2671
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2133
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8490
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9535
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1172
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1385
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2999
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

15-78562796-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78562796
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78562796
    reference: chr 15
allele count: 8
allele frequency: 6.92269084993337e-5
allele num: 115562
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.133-43A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.133-43A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140403
  ensembl transcript: ENST00000485075
  gene symbol: DNAJA4
  hgvsc: ENST00000485075.1:n.438A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000413499
  ensembl transcript: ENST00000446172
  gene symbol: DNAJA4
  hgvsc: ENST00000446172.2:c.52-43A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.133-2641A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.220-43A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.133-43A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.133-43A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.133-43A>G
  variant of: http://identifiers.org/hgnc/14885
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9682
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3440
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7441
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8531
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7307
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2644
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4026
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2693
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5625
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1692
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18946
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1360
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum

15-78562800-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78562800
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 78562800
    reference: chr 15
allele count: 3
allele frequency: 2.590673575129534e-5
allele num: 115800
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140403
  ensembl transcript: ENST00000485075
  gene symbol: DNAJA4
  hgvsc: ENST00000485075.1:n.442A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000443962
  ensembl transcript: ENST00000483802
  gene symbol: DNAJA4
  hgvsc: ENST00000483802.2:c.133-39A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000395191
  ensembl transcript: ENST00000440911
  gene symbol: DNAJA4
  hgvsc: ENST00000440911.2:c.133-39A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378324
  ensembl transcript: ENST00000394855
  gene symbol: DNAJA4
  hgvsc: ENST00000394855.3:c.220-39A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000407136
  ensembl transcript: ENST00000423642
  gene symbol: DNAJA4
  hgvsc: ENST00000423642.1:c.133-39A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000413499
  ensembl transcript: ENST00000446172
  gene symbol: DNAJA4
  hgvsc: ENST00000446172.2:c.52-39A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000339581
  ensembl transcript: ENST00000343789
  gene symbol: DNAJA4
  hgvsc: ENST00000343789.3:c.133-39A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000378321
  ensembl transcript: ENST00000394852
  gene symbol: DNAJA4
  hgvsc: ENST00000394852.3:c.133-39A>G
  variant of: http://identifiers.org/hgnc/14885
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140403
  ensembl protein: ENSP00000441946
  ensembl transcript: ENST00000542636
  gene symbol: DNAJA4
  hgvsc: ENST00000542636.1:c.133-2637A>G
  variant of: http://identifiers.org/hgnc/14885
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9753
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3222
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7432
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7426
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4031
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 400
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20558
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2078
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26142
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1124
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 653
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 103
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 978
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6822
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49052
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3746
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.121076233183857e-4
allele num: 8920
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7274
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

FS
type: SiteQuality
SIO_000300: 9.890000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

VQSLOD
type: SiteQuality
SIO_000300: -1.469e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

QD
type: SiteQuality
SIO_000300: 1.243e1

MQ
type: SiteQuality
SIO_000300: 5.707e1

DP
type: SiteQuality
SIO_000300: 1.065963e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-3

GenotypeQuality
all individuals: 23821
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 691
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1427
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 511
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22595
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2633
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 605
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 981
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.285236912004113e-4
allele num: 46684
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6980
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3554
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13136
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.01105e6

MQRankSum
type: SiteQuality
SIO_000300: 7.66e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.43e-1

MQ
type: SiteQuality
SIO_000300: 5.925e1

QD
type: SiteQuality
SIO_000300: 1.034e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.93e0

FS
type: SiteQuality
SIO_000300: 4.98e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.48e-1

GenotypeQuality
all individuals: 1048
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
all individuals: 2576
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6844
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8258
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.373305344179131e-5
allele num: 45732
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13012
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3444
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6384
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

DP
type: SiteQuality
SIO_000300: 9.87949e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.38e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.34e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.373e0

QD
type: SiteQuality
SIO_000300: 9.529999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.399999999999999e-1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 15

South Asian
type: Population
allele count: 15
allele frequency: 1.159734034328128e-3
allele num: 12934
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6758
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3386
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8082
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6324
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45130
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

QD
type: SiteQuality
SIO_000300: 1.071e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.18e-1

FS
type: SiteQuality
SIO_000300: 8.708e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.71e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.9e-2

DP
type: SiteQuality
SIO_000300: 9.74004e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1065
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 2.477700693756194e-4
allele num: 8072
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6746
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6308
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45028
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12922
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

VQSLOD
type: SiteQuality
SIO_000300: -5.914e-1

DP
type: SiteQuality
SIO_000300: 9.73485e5

QD
type: SiteQuality
SIO_000300: 1.007e1

FS
type: SiteQuality
SIO_000300: 4.716e0

MQRankSum
type: SiteQuality
SIO_000300: 2.01e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 6.69e-1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6010
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43142
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7704
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 3.154574132492114e-4
allele num: 12680
num of homozygotes: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3168
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.372e5

FS
type: SiteQuality
SIO_000300: 7.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.47e-1

QD
type: SiteQuality
SIO_000300: 2.202e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.434e0

VQSLOD
type: SiteQuality
SIO_000300: -1.554e0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 99
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GenotypeQuality
all individuals: 387
bin: 9.75e1
variant carriers: 37

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7430
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42030
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6444
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5886
num of homozygotes: 0

South Asian
type: Population
allele count: 36
allele frequency: 2.861230329041488e-3
allele num: 12582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3078
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.912e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.28e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.98e-1

FS
type: SiteQuality
SIO_000300: 2.169e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

DP
type: SiteQuality
SIO_000300: 9.07845e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-3

QD
type: SiteQuality
SIO_000300: 1.018e1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26632
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 4.432624113475177e-4
allele num: 4512
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10420
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.26e-1

DP
type: SiteQuality
SIO_000300: 6.55825e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.37e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 5.71e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.84e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.14e-2

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26382
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.243158366980709e-4
allele num: 4458
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 392
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.44e-1

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 6.54315e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.89e-2

FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.094e1

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4426
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 392
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.910360884749709e-4
allele num: 3436
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 4458
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26382
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.43e0

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 6.54315e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.89e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -9.55e-1

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.094e1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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African
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allele frequency: 1.132246376811594e-3
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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FS
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BaseQRankSum
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DP
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ReadPosRankSum
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VQSLOD
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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African
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allele frequency: 1.173158141717504e-3
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
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VQSLOD
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MQRankSum
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MQ
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QD
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InbreedingCoeff
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DP
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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MQ
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QD
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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South Asian
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Latino
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allele frequency: 4.972650422675286e-4
allele num: 4022
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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BaseQRankSum
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MQ
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MQRankSum
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DP
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InbreedingCoeff
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FS
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VQSLOD
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QD
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 3924
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African
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allele frequency: 0.0e0
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East Asian
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Other
type: Population
allele count: 0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 8.265829062654984e-5
allele num: 24196
num of homozygotes: 0

South Asian
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MQRankSum
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QD
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ReadPosRankSum
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DP
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FS
type: SiteQuality
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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South Asian
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allele num: 9804
num of homozygotes: 0

European (Finnish)
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Other
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European (Non-Finnish)
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allele frequency: 0.0e0
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MQ
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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QD
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FS
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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African
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European (Non-Finnish)
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Latino
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East Asian
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MQRankSum
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BaseQRankSum
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FS
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ReadPosRankSum
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MQ
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InbreedingCoeff
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ClippingRankSum
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DP
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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East Asian
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Latino
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European (Finnish)
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Other
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South Asian
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QD
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ReadPosRankSum
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MQRankSum
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DP
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InbreedingCoeff
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FS
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MQ
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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East Asian
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Latino
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European (Non-Finnish)
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African
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Other
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MQRankSum
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FS
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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DP
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QD
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MQ
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 7.222302470027445e-5
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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Latino
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Other
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South Asian
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ClippingRankSum
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ReadPosRankSum
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DP
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InbreedingCoeff
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BaseQRankSum
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FS
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QD
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VQSLOD
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MQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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African
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Other
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European (Non-Finnish)
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allele frequency: 7.407407407407407e-5
allele num: 13500
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East Asian
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VQSLOD
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QD
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MQ
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InbreedingCoeff
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ReadPosRankSum
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FS
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BaseQRankSum
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DP
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MQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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East Asian
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
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African
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European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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ClippingRankSum
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DP
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MQRankSum
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QD
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ReadPosRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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FS
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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African
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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Other
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allele num: 268
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Latino
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allele num: 1482
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MQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

MQ
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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DP
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ReadPosRankSum
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QD
type: SiteQuality
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FS
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SIO_000300: 1.604e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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Other
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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ReadPosRankSum
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VQSLOD
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MQRankSum
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DP
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ClippingRankSum
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InbreedingCoeff
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QD
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FS
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MQ
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele num: 118
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European (Finnish)
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Latino
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East Asian
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African
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allele frequency: 5.263157894736842e-3
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European (Non-Finnish)
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allele frequency: 1.497005988023952e-3
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South Asian
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FS
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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QD
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DP
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MQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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East Asian
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Other
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European (Non-Finnish)
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European (Finnish)
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South Asian
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BaseQRankSum
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QD
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MQRankSum
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InbreedingCoeff
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VQSLOD
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MQ
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ReadPosRankSum
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FS
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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Other
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East Asian
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African
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European (Non-Finnish)
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European (Finnish)
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ClippingRankSum
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QD
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VQSLOD
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FS
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Finnish)
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South Asian
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European (Non-Finnish)
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Latino
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Other
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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MQ
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MQRankSum
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BaseQRankSum
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DP
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QD
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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Latino
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East Asian
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European (Non-Finnish)
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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QD
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VQSLOD
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DP
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FS
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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African
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European (Finnish)
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Latino
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MQ
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ReadPosRankSum
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MQRankSum
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DP
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InbreedingCoeff
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QD
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FS
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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European (Finnish)
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African
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East Asian
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Latino
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InbreedingCoeff
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MQRankSum
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DP
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BaseQRankSum
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ReadPosRankSum
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QD
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FS
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VQSLOD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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African
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European (Non-Finnish)
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East Asian
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QD
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BaseQRankSum
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DP
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ClippingRankSum
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InbreedingCoeff
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MQ
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VQSLOD
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MQRankSum
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ReadPosRankSum
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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East Asian
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European (Non-Finnish)
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DP
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FS
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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European (Finnish)
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Latino
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European (Non-Finnish)
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Other
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QD
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VQSLOD
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ClippingRankSum
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FS
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MQRankSum
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MQ
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DP
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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African
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European (Finnish)
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East Asian
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Latino
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South Asian
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VQSLOD
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BaseQRankSum
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QD
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MQ
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DP
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FS
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ReadPosRankSum
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InbreedingCoeff
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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African
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MQRankSum
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MQ
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VQSLOD
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FS
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DP
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ReadPosRankSum
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InbreedingCoeff
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African
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DP
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MQRankSum
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VQSLOD
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 112
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 8.092797410304828e-4
allele num: 7414
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2678
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.37e-1

DP
type: SiteQuality
SIO_000300: 1.32936e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.096e0

FS
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SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.507e1

MQRankSum
type: SiteQuality
SIO_000300: 5.92e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.24e0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 110
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2626
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 1.371365880416895e-4
allele num: 7292
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.18955e5

MQ
type: SiteQuality
SIO_000300: 6.194e1

VQSLOD
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.28e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.214e0

QD
type: SiteQuality
SIO_000300: 1.571e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.384657989476599e-4
allele num: 7222
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 128
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 88
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 108
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.414e0

MQRankSum
type: SiteQuality
SIO_000300: 4.01e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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DP
type: SiteQuality
SIO_000300: 1.18463e5

InbreedingCoeff
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SIO_000300: -4.48e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.87e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.54e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11268
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64942
num of homozygotes: 0

African
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allele count: 3
allele frequency: 3.184037359371683e-4
allele num: 9422
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8350
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16078
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.56e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.3e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

DP
type: SiteQuality
SIO_000300: 1.654073e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.307e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.5e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11272
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.538461538461538e-5
allele num: 65000
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9434
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16118
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8368
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.176e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.013e0

MQRankSum
type: SiteQuality
SIO_000300: -2.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.381e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.67e0

QD
type: SiteQuality
SIO_000300: 1.085e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8380
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9454
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16162
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.536759282026063e-5
allele num: 65072
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.79e-1

DP
type: SiteQuality
SIO_000300: 1.700707e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.8e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.417e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.796e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.532379171902295e-5
allele num: 65258
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11318
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9468
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.367e1

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -9.0e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16176
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65344
num of homozygotes: 0

African
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allele count: 2
allele frequency: 2.111040743086342e-4
allele num: 9474
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11332
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

FS
type: SiteQuality
SIO_000300: 2.237e0

DP
type: SiteQuality
SIO_000300: 1.734812e6

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 6.81e-1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.524064986131009e-5
allele num: 65614
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
SIO_000300: -7.235e-1

DP
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.08e0

GenotypeQuality
all individuals: 909
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 671
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1505
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1866
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37945
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 873
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5282
bin: 9.75e1
variant carriers: 3

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16260
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.566905160602831e-5
allele num: 65690
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.455e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.24e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.21e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.98e-1

QD
type: SiteQuality
SIO_000300: 1.096e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.24e-1

DP
type: SiteQuality
SIO_000300: 1.774863e6

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6212
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1866
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 671
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 909
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5282
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37945
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16260
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65690
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9560
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.455e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

QD
type: SiteQuality
SIO_000300: 1.096e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.24e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.24e-1

DP
type: SiteQuality
SIO_000300: 1.774863e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.21e0

VQSLOD
type: SiteQuality
SIO_000300: 4.98e-1

GenotypeQuality
all individuals: 6256
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1883
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 672
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5280
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 467
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38277
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2256
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9594
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65710
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.226692836113837e-4
allele num: 16304
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.149e0

QD
type: SiteQuality
SIO_000300: 1.428e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.9e0

DP
type: SiteQuality
SIO_000300: 1.790416e6

VQSLOD
type: SiteQuality
SIO_000300: 6.18e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.9e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.3e-2

GenotypeQuality
all individuals: 154
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5979
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2061
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 607
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1364
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1754
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8592
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514600751241973e-5
allele num: 66024
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16322
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.014e0

DP
type: SiteQuality
SIO_000300: 1.865427e6

VQSLOD
type: SiteQuality
SIO_000300: 5.09e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.47e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.99e-1

FS
type: SiteQuality
SIO_000300: 5.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.9e-2

MQ
type: SiteQuality
SIO_000300: 6.037e1

QD
type: SiteQuality
SIO_000300: 1.786e1

MQRankSum
type: SiteQuality
SIO_000300: 4.76e-1

GenotypeQuality
all individuals: 107
bin: 5.75e1
variant carriers: 3

GenotypeQuality
all individuals: 205
bin: 5.25e1
variant carriers: 4

GenotypeQuality
all individuals: 65
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1364
bin: 8.25e1
variant carriers: 4

GenotypeQuality
all individuals: 138
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8592
bin: 9.75e1
variant carriers: 3709

GenotypeQuality
all individuals: 607
bin: 8.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2061
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 37424
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 154
bin: 3.75e1
variant carriers: 3

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 471
bin: 2.25e1
variant carriers: 2

Other
type: Population
allele count: 28
allele frequency: 3.125e-2
allele num: 896
num of homozygotes: 1

East Asian
type: Population
allele count: 2
allele frequency: 2.323420074349442e-4
allele num: 8608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 239
allele frequency: 3.61682808716707e-2
allele num: 6608
num of homozygotes: 4

European (Non-Finnish)
type: Population
allele count: 3114
allele frequency: 4.716466739367503e-2
allele num: 66024
num of homozygotes: 88

African
type: Population
allele count: 62
allele frequency: 6.44624662091911e-3
allele num: 9618
num of homozygotes: 1

South Asian
type: Population
allele count: 154
allele frequency: 9.435118245313075e-3
allele num: 16322
num of homozygotes: 2

Latino
type: Population
allele count: 245
allele frequency: 2.136006974716652e-2
allele num: 11470
num of homozygotes: 8

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.47e-2

QD
type: SiteQuality
SIO_000300: 1.786e1

FS
type: SiteQuality
SIO_000300: 5.52e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.09e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.014e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.99e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.9e-2

DP
type: SiteQuality
SIO_000300: 1.865427e6

MQ
type: SiteQuality
SIO_000300: 6.037e1

GenotypeQuality
all individuals: 36
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6026
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1402
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1785
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37549
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11086
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6202
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60956
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.218132073125233e-5
allele num: 16082
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.905e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.88e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

FS
type: SiteQuality
SIO_000300: 5.52e-1

QD
type: SiteQuality
SIO_000300: 1.72e1

MQRankSum
type: SiteQuality
SIO_000300: 4.82e-1

DP
type: SiteQuality
SIO_000300: 1.704299e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40134
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5228
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 30
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
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variant carriers: 0

GenotypeQuality
all individuals: 1884
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1451
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 849
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16366
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66120
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.035840066293764e-4
allele num: 9654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.219e0

DP
type: SiteQuality
SIO_000300: 1.797544e6

QD
type: SiteQuality
SIO_000300: 1.445e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.95e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.54e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.447e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -5.313e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.75e-1

GenotypeQuality
all individuals: 112
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 848
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6517
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5227
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1439
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40407
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 622
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66142
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9662
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.104260774020266e-5
allele num: 16382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.584e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.24e-1

QD
type: SiteQuality
SIO_000300: 1.338e1

MQRankSum
type: SiteQuality
SIO_000300: -4.26e-1

DP
type: SiteQuality
SIO_000300: 1.800464e6

VQSLOD
type: SiteQuality
SIO_000300: 1.46e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.514e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.71e-1

GenotypeQuality
all individuals: 623
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
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GenotypeQuality
all individuals: 97
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 846
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1435
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variant carriers: 0

GenotypeQuality
all individuals: 40341
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5223
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1855
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9666
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.105751618024179e-5
allele num: 16378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66132
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.54e0

QD
type: SiteQuality
SIO_000300: 8.949999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 3.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.821e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.57e-1

DP
type: SiteQuality
SIO_000300: 1.79978e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1850
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66106
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.109481915933529e-5
allele num: 16368
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9660
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.286e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.272e0

MQRankSum
type: SiteQuality
SIO_000300: 3.2e-2

QD
type: SiteQuality
SIO_000300: 2.117e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.63e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

DP
type: SiteQuality
SIO_000300: 1.798978e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.110228522546743e-5
allele num: 16366
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66110
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9658
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 6.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.229e0

QD
type: SiteQuality
SIO_000300: 1.27e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.374e0

MQRankSum
type: SiteQuality
SIO_000300: -7.24e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.799067e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

Other
type: Population
allele count: 4
allele frequency: 4.464285714285714e-3
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 29
allele frequency: 4.38861985472155e-4
allele num: 66080
num of homozygotes: 0

Latino
type: Population
allele count: 57
allele frequency: 4.961699164345404e-3
allele num: 11488
num of homozygotes: 0

African
type: Population
allele count: 970
allele frequency: 1.00330988829127e-1
allele num: 9668
num of homozygotes: 58

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.057355998532469e-4
allele num: 16354
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.27e0

FS
type: SiteQuality
SIO_000300: 5.620000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.98e-1

QD
type: SiteQuality
SIO_000300: 1.41e1

DP
type: SiteQuality
SIO_000300: 1.822329e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.43e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.45e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.11e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.578053955744165e-5
allele num: 65980
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.615518744551002e-4
allele num: 11470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16326
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.29e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.85e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.86e-1

FS
type: SiteQuality
SIO_000300: 6.26e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 1.792912e6

QD
type: SiteQuality
SIO_000300: 1.355e1

GenotypeQuality
all individuals: 7
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65934
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.131207847946045e-5
allele num: 16310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.788861e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.72e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 8.56e-1

InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.037e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.599999999999999e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16290
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517634917744187e-5
allele num: 65892
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.919e1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 4.65e-1

DP
type: SiteQuality
SIO_000300: 1.783009e6

BaseQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16280
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51846452866861e-5
allele num: 65856
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.09e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.93e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.928e1

DP
type: SiteQuality
SIO_000300: 1.780051e6

MQRankSum
type: SiteQuality
SIO_000300: -1.07e0

QD
type: SiteQuality
SIO_000300: 2.803e1

VQSLOD
type: SiteQuality
SIO_000300: -2.755e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1996
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9600
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11408
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5220700152207e-5
allele num: 65700
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16248
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.349e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.85e-1

QD
type: SiteQuality
SIO_000300: 1.197e1

FS
type: SiteQuality
SIO_000300: 1.354e0

MQ
type: SiteQuality
SIO_000300: 6.067e1

DP
type: SiteQuality
SIO_000300: 1.75143e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.86e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1272
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11392
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.169864295741694e-4
allele num: 8548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16238
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65644
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.083e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.9e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 5.825e0

MQRankSum
type: SiteQuality
SIO_000300: -1.84e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.9e-2

DP
type: SiteQuality
SIO_000300: 1.731586e6

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1292
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1443
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.53477807109092e-5
allele num: 65156
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8450
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16126
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9502
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.971e1

VQSLOD
type: SiteQuality
SIO_000300: 2.84e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

QD
type: SiteQuality
SIO_000300: 1.202e1

MQRankSum
type: SiteQuality
SIO_000300: -1.157e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.26e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.106e0

DP
type: SiteQuality
SIO_000300: 1.614468e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9424
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.911067545891998e-5
allele num: 11222
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8322
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16034
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64698
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.13e0

VQSLOD
type: SiteQuality
SIO_000300: 5.11e-1

FS
type: SiteQuality
SIO_000300: 3.468e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

DP
type: SiteQuality
SIO_000300: 1.589092e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.52e-1

QD
type: SiteQuality
SIO_000300: 1.128e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 808
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8000
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63074
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9214
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10930
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.271455816910362e-4
allele num: 15730
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.01e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.17e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.359e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.573e0

DP
type: SiteQuality
SIO_000300: 1.578951e6

QD
type: SiteQuality
SIO_000300: 1.484e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2010
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.560744162816831e-5
allele num: 64072
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13820
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8432
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11382
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9182
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.048e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.26e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.734e0

VQSLOD
type: SiteQuality
SIO_000300: 2.17e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.265886e6

MQRankSum
type: SiteQuality
SIO_000300: 1.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.43e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6370
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.400384061449832e-4
allele num: 8332
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.216803369541122e-4
allele num: 9022
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11274
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.142085087664174e-5
allele num: 63652
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 814
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e0

MQRankSum
type: SiteQuality
SIO_000300: -5.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.817e0

MQ
type: SiteQuality
SIO_000300: 5.884e1

DP
type: SiteQuality
SIO_000300: 2.277349e6

FS
type: SiteQuality
SIO_000300: 1.7967e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.41e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.842e0

QD
type: SiteQuality
SIO_000300: 3.5e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11404
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9302
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.238735251308414e-4
allele num: 64582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14378
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.272615e6

FS
type: SiteQuality
SIO_000300: 4.071e0

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

QD
type: SiteQuality
SIO_000300: 1.262e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

MQ
type: SiteQuality
SIO_000300: 5.981e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.38e-1